Query 047518
Match_columns 256
No_of_seqs 422 out of 1207
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 11:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.1E-45 1.1E-49 306.8 30.3 247 8-255 480-749 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.1E-44 2.4E-49 304.8 30.3 249 7-256 444-715 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2E-40 4.3E-45 275.4 23.6 241 8-253 166-454 (697)
4 PLN03081 pentatricopeptide (PP 100.0 3.9E-40 8.4E-45 273.6 23.5 225 7-239 266-508 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 7.4E-39 1.6E-43 271.6 24.3 206 7-217 229-451 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 6.5E-39 1.4E-43 272.0 23.5 240 8-256 129-385 (857)
7 PRK11788 tetratricopeptide rep 99.9 2.5E-20 5.4E-25 146.1 22.5 244 7-255 76-348 (389)
8 PRK11788 tetratricopeptide rep 99.9 2.1E-19 4.5E-24 141.0 24.1 242 7-254 42-311 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 2.2E-17 4.8E-22 142.2 27.0 236 11-253 646-899 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 5.8E-17 1.3E-21 139.7 27.1 236 10-253 543-798 (899)
11 PRK15174 Vi polysaccharide exp 99.8 2E-15 4.2E-20 124.9 26.6 243 6-254 82-347 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 2.4E-15 5.2E-20 124.3 25.6 224 10-253 341-570 (615)
13 PRK15174 Vi polysaccharide exp 99.7 4.2E-15 9.2E-20 123.0 25.5 240 7-254 117-381 (656)
14 PF13429 TPR_15: Tetratricopep 99.7 1.3E-16 2.8E-21 119.4 12.5 240 6-252 14-275 (280)
15 PF13429 TPR_15: Tetratricopep 99.7 1.6E-16 3.6E-21 118.9 10.4 211 41-254 13-243 (280)
16 TIGR00990 3a0801s09 mitochondr 99.7 4.5E-14 9.8E-19 116.8 25.7 243 3-252 130-460 (615)
17 PRK10747 putative protoheme IX 99.7 1.6E-13 3.5E-18 107.4 26.8 233 11-252 129-388 (398)
18 COG2956 Predicted N-acetylgluc 99.7 6.3E-14 1.4E-18 101.2 21.1 230 7-254 42-278 (389)
19 PRK11447 cellulose synthase su 99.7 7.7E-14 1.7E-18 122.7 24.5 241 7-252 468-738 (1157)
20 TIGR00540 hemY_coli hemY prote 99.7 7.7E-13 1.7E-17 104.1 27.4 242 8-252 126-397 (409)
21 TIGR02521 type_IV_pilW type IV 99.7 6.4E-13 1.4E-17 96.7 24.6 201 36-254 31-232 (234)
22 PRK12370 invasion protein regu 99.6 4E-13 8.7E-18 109.5 24.9 218 13-253 274-501 (553)
23 PRK09782 bacteriophage N4 rece 99.6 1.9E-12 4E-17 110.6 27.9 216 14-253 490-705 (987)
24 TIGR02521 type_IV_pilW type IV 99.6 5.2E-13 1.1E-17 97.2 20.9 195 7-219 38-232 (234)
25 KOG4626 O-linked N-acetylgluco 99.6 8E-14 1.7E-18 108.9 16.2 235 9-253 227-484 (966)
26 PRK11447 cellulose synthase su 99.6 1.3E-12 2.9E-17 115.1 25.7 225 7-251 276-555 (1157)
27 KOG1126 DNA-binding cell divis 99.6 5.7E-14 1.2E-18 110.1 14.8 229 5-253 358-619 (638)
28 KOG4626 O-linked N-acetylgluco 99.6 1.3E-12 2.9E-17 102.3 21.8 213 9-243 295-508 (966)
29 PRK12370 invasion protein regu 99.6 2E-12 4.4E-17 105.5 23.6 220 12-255 316-536 (553)
30 COG3071 HemY Uncharacterized e 99.5 5.4E-11 1.2E-15 88.5 25.8 223 11-252 95-388 (400)
31 PRK09782 bacteriophage N4 rece 99.5 1.9E-11 4.1E-16 104.5 26.7 219 13-254 451-672 (987)
32 PF13041 PPR_2: PPR repeat fam 99.5 3.3E-14 7.1E-19 76.8 6.6 50 118-167 1-50 (50)
33 KOG1129 TPR repeat-containing 99.5 3.9E-13 8.4E-18 97.5 13.8 227 6-254 229-458 (478)
34 PRK10747 putative protoheme IX 99.5 4.5E-11 9.8E-16 93.8 25.9 220 11-254 95-357 (398)
35 COG2956 Predicted N-acetylgluc 99.5 4.1E-12 8.9E-17 92.0 18.2 242 7-253 76-346 (389)
36 KOG4422 Uncharacterized conser 99.5 5.1E-12 1.1E-16 94.9 19.3 205 11-220 218-463 (625)
37 PF13041 PPR_2: PPR repeat fam 99.5 5.2E-14 1.1E-18 76.0 6.5 49 188-236 1-49 (50)
38 KOG1126 DNA-binding cell divis 99.5 1.8E-12 3.9E-17 101.9 17.3 220 14-253 333-585 (638)
39 PRK10049 pgaA outer membrane p 99.5 5.4E-11 1.2E-15 100.8 27.0 224 17-254 213-456 (765)
40 KOG4422 Uncharacterized conser 99.5 1.5E-11 3.2E-16 92.6 20.3 212 36-252 116-340 (625)
41 KOG1155 Anaphase-promoting com 99.5 3.3E-11 7.2E-16 91.3 20.9 164 72-253 331-494 (559)
42 PRK14574 hmsH outer membrane p 99.5 1.1E-10 2.3E-15 98.1 26.3 241 8-254 110-445 (822)
43 TIGR00540 hemY_coli hemY prote 99.5 2.1E-10 4.6E-15 90.4 26.2 219 10-250 94-360 (409)
44 PRK10049 pgaA outer membrane p 99.5 2.3E-10 4.9E-15 97.1 27.2 235 13-253 28-338 (765)
45 PRK11189 lipoprotein NlpI; Pro 99.5 2.6E-10 5.6E-15 85.9 24.2 224 9-255 35-266 (296)
46 KOG1840 Kinesin light chain [C 99.5 3.6E-11 7.7E-16 94.9 20.1 239 6-252 205-477 (508)
47 KOG0547 Translocase of outer m 99.4 9.4E-11 2E-15 89.5 18.2 229 3-251 329-563 (606)
48 KOG1155 Anaphase-promoting com 99.4 2.5E-10 5.4E-15 86.7 20.0 189 9-216 339-533 (559)
49 COG3063 PilF Tfp pilus assembl 99.4 6.7E-10 1.4E-14 77.1 19.9 190 40-247 39-229 (250)
50 PRK11189 lipoprotein NlpI; Pro 99.4 4.6E-10 1E-14 84.6 20.1 202 7-233 71-279 (296)
51 KOG0547 Translocase of outer m 99.3 1.1E-09 2.5E-14 83.8 21.1 244 3-253 118-490 (606)
52 PRK14574 hmsH outer membrane p 99.3 5.7E-09 1.2E-13 88.0 27.2 226 17-253 268-512 (822)
53 COG3063 PilF Tfp pilus assembl 99.3 6.1E-09 1.3E-13 72.4 22.3 202 7-228 42-243 (250)
54 KOG2003 TPR repeat-containing 99.3 1.1E-09 2.3E-14 83.5 20.3 213 6-240 496-709 (840)
55 KOG2076 RNA polymerase III tra 99.3 1.1E-09 2.4E-14 89.4 21.6 241 7-251 146-509 (895)
56 PF12569 NARP1: NMDA receptor- 99.3 6.6E-09 1.4E-13 83.1 25.1 237 10-252 14-332 (517)
57 KOG1129 TPR repeat-containing 99.3 2.4E-10 5.1E-15 83.4 14.7 194 40-252 227-422 (478)
58 KOG2003 TPR repeat-containing 99.3 1.3E-09 2.8E-14 83.1 18.2 242 7-253 426-688 (840)
59 COG3071 HemY Uncharacterized e 99.2 2.7E-08 5.9E-13 74.5 22.8 203 12-218 130-389 (400)
60 KOG4318 Bicoid mRNA stability 99.2 2.5E-09 5.5E-14 87.4 17.3 214 21-240 11-286 (1088)
61 KOG1125 TPR repeat-containing 99.2 1E-08 2.2E-13 80.1 19.0 234 7-246 292-563 (579)
62 cd05804 StaR_like StaR_like; a 99.2 1.1E-07 2.3E-12 74.0 24.3 226 9-253 52-292 (355)
63 KOG1070 rRNA processing protei 99.1 6.9E-08 1.5E-12 82.7 22.8 217 20-256 1444-1665(1710)
64 KOG1840 Kinesin light chain [C 99.1 3.8E-08 8.2E-13 78.1 20.3 206 37-252 200-436 (508)
65 KOG0495 HAT repeat protein [RN 99.1 1.6E-07 3.5E-12 74.9 23.3 233 11-251 595-877 (913)
66 KOG1173 Anaphase-promoting com 99.1 2.5E-08 5.5E-13 77.8 18.1 242 6-252 250-516 (611)
67 KOG4318 Bicoid mRNA stability 99.1 1.9E-08 4.1E-13 82.5 18.0 193 57-256 11-267 (1088)
68 KOG2002 TPR-containing nuclear 99.1 1.8E-07 3.9E-12 77.6 22.8 230 16-252 146-407 (1018)
69 TIGR03302 OM_YfiO outer membra 99.1 9.3E-08 2E-12 69.9 19.3 171 71-254 33-232 (235)
70 PF12854 PPR_1: PPR repeat 99.1 2.8E-10 6E-15 55.4 3.9 32 220-251 2-33 (34)
71 PLN02789 farnesyltranstransfer 99.1 5.5E-07 1.2E-11 68.2 23.3 221 11-252 48-300 (320)
72 KOG2002 TPR-containing nuclear 99.1 3.7E-08 7.9E-13 81.5 18.0 223 13-253 509-744 (1018)
73 KOG1174 Anaphase-promoting com 99.0 2E-07 4.4E-12 70.5 20.1 126 126-254 340-500 (564)
74 PF04733 Coatomer_E: Coatomer 99.0 6.7E-08 1.4E-12 72.2 17.7 130 119-253 130-264 (290)
75 TIGR03302 OM_YfiO outer membra 99.0 1.7E-08 3.7E-13 73.8 13.3 182 5-219 38-232 (235)
76 KOG2076 RNA polymerase III tra 99.0 3.3E-07 7.1E-12 75.4 21.1 245 7-253 248-554 (895)
77 KOG1128 Uncharacterized conser 99.0 2.1E-08 4.5E-13 80.5 13.7 196 8-217 406-614 (777)
78 PF12854 PPR_1: PPR repeat 99.0 1.2E-09 2.5E-14 53.2 3.8 32 185-216 2-33 (34)
79 PF12569 NARP1: NMDA receptor- 99.0 1.7E-06 3.7E-11 69.6 23.7 207 43-255 11-292 (517)
80 PRK10370 formate-dependent nit 99.0 4.2E-07 9.1E-12 64.2 18.1 156 43-228 23-181 (198)
81 KOG0495 HAT repeat protein [RN 99.0 2E-06 4.3E-11 69.0 23.3 237 9-252 525-780 (913)
82 PRK10370 formate-dependent nit 98.9 1.6E-07 3.4E-12 66.4 15.6 120 49-185 52-174 (198)
83 KOG4162 Predicted calmodulin-b 98.9 6E-06 1.3E-10 67.3 25.4 232 16-252 460-781 (799)
84 KOG1915 Cell cycle control pro 98.9 1.7E-06 3.8E-11 66.8 21.4 234 13-254 154-536 (677)
85 KOG1173 Anaphase-promoting com 98.9 2.9E-07 6.4E-12 72.1 17.4 217 13-236 291-533 (611)
86 cd05804 StaR_like StaR_like; a 98.9 1.7E-06 3.6E-11 67.4 22.1 196 10-219 16-215 (355)
87 COG5010 TadD Flp pilus assembl 98.9 1.6E-07 3.5E-12 66.7 14.2 165 35-218 66-230 (257)
88 COG5010 TadD Flp pilus assembl 98.9 3.4E-06 7.3E-11 60.2 20.7 161 70-249 66-226 (257)
89 PRK14720 transcript cleavage f 98.9 1.2E-06 2.5E-11 74.1 21.2 215 31-253 26-251 (906)
90 PRK15179 Vi polysaccharide bio 98.9 2.6E-06 5.6E-11 71.1 23.0 147 68-232 83-229 (694)
91 KOG0548 Molecular co-chaperone 98.8 3.4E-06 7.4E-11 65.9 20.6 93 4-100 6-99 (539)
92 PRK15359 type III secretion sy 98.8 6.4E-07 1.4E-11 60.0 14.4 109 20-149 13-121 (144)
93 PRK15359 type III secretion sy 98.8 2E-06 4.4E-11 57.6 16.6 106 122-230 26-131 (144)
94 TIGR02552 LcrH_SycD type III s 98.8 1.2E-06 2.7E-11 58.1 14.5 111 117-231 14-124 (135)
95 KOG1070 rRNA processing protei 98.8 1E-05 2.2E-10 70.1 22.6 218 10-245 1468-1691(1710)
96 PF04733 Coatomer_E: Coatomer 98.8 2.1E-07 4.6E-12 69.5 11.6 156 43-219 109-265 (290)
97 PRK15179 Vi polysaccharide bio 98.8 8.5E-06 1.8E-10 68.1 21.9 143 35-196 85-228 (694)
98 KOG1125 TPR repeat-containing 98.7 3.2E-06 7E-11 66.6 18.0 191 43-252 292-525 (579)
99 KOG1915 Cell cycle control pro 98.7 1.8E-05 3.9E-10 61.4 21.2 234 12-253 85-350 (677)
100 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1.6E-06 3.4E-11 67.3 15.8 126 121-252 170-295 (395)
101 KOG4340 Uncharacterized conser 98.7 2E-06 4.3E-11 62.7 15.1 236 9-249 19-334 (459)
102 PLN02789 farnesyltranstransfer 98.7 2.8E-05 6.1E-10 59.1 22.0 196 39-253 40-249 (320)
103 KOG2376 Signal recognition par 98.7 4.9E-06 1.1E-10 65.8 17.4 224 3-255 15-254 (652)
104 KOG1156 N-terminal acetyltrans 98.7 2.6E-05 5.6E-10 62.6 21.4 226 3-250 44-279 (700)
105 TIGR02552 LcrH_SycD type III s 98.7 1.8E-06 3.9E-11 57.3 13.3 110 142-254 5-114 (135)
106 KOG1156 N-terminal acetyltrans 98.7 6E-06 1.3E-10 66.0 17.0 93 160-255 376-469 (700)
107 PF09976 TPR_21: Tetratricopep 98.6 6.8E-06 1.5E-10 55.2 15.3 127 122-251 14-144 (145)
108 KOG3060 Uncharacterized conser 98.6 5.1E-05 1.1E-09 54.1 21.1 189 13-219 25-220 (289)
109 KOG2047 mRNA splicing factor [ 98.6 0.00011 2.3E-09 59.3 23.1 136 10-149 112-277 (835)
110 KOG1914 mRNA cleavage and poly 98.6 0.00014 2.9E-09 57.5 23.2 129 122-252 368-499 (656)
111 KOG3081 Vesicle coat complex C 98.6 2.8E-05 6.1E-10 55.8 17.7 50 134-184 187-236 (299)
112 COG4783 Putative Zn-dependent 98.6 0.00013 2.9E-09 56.8 22.0 119 81-216 316-434 (484)
113 KOG1174 Anaphase-promoting com 98.6 2.6E-05 5.7E-10 59.5 17.9 188 11-219 311-500 (564)
114 KOG0624 dsRNA-activated protei 98.6 1.7E-05 3.7E-10 59.1 16.4 175 5-184 43-252 (504)
115 KOG2053 Mitochondrial inherita 98.6 3.5E-05 7.7E-10 64.0 19.8 229 7-255 16-256 (932)
116 TIGR00756 PPR pentatricopeptid 98.6 1.4E-07 3E-12 46.4 4.1 33 38-70 2-34 (35)
117 KOG3081 Vesicle coat complex C 98.5 3.2E-05 7E-10 55.5 16.7 154 74-252 111-269 (299)
118 TIGR00756 PPR pentatricopeptid 98.5 1.9E-07 4E-12 46.0 4.2 33 122-154 2-34 (35)
119 PF13812 PPR_3: Pentatricopept 98.5 1.9E-07 4.1E-12 45.6 4.1 32 122-153 3-34 (34)
120 COG4783 Putative Zn-dependent 98.5 0.00019 4.1E-09 56.0 21.9 123 125-251 311-434 (484)
121 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.6E-05 3.5E-10 61.7 16.4 125 73-217 171-295 (395)
122 KOG4340 Uncharacterized conser 98.5 1.1E-05 2.4E-10 58.9 14.4 196 38-256 12-209 (459)
123 PF13812 PPR_3: Pentatricopept 98.5 2E-07 4.2E-12 45.6 4.0 33 37-69 2-34 (34)
124 KOG1128 Uncharacterized conser 98.5 2E-05 4.4E-10 64.0 16.8 200 40-254 402-616 (777)
125 PF01535 PPR: PPR repeat; Int 98.5 2.1E-07 4.5E-12 44.4 3.5 30 227-256 2-31 (31)
126 PF10037 MRP-S27: Mitochondria 98.5 4.9E-06 1.1E-10 64.9 12.2 121 118-238 64-186 (429)
127 PF09976 TPR_21: Tetratricopep 98.5 3.3E-05 7.2E-10 51.9 14.7 130 72-216 13-144 (145)
128 PRK14720 transcript cleavage f 98.5 8.8E-05 1.9E-09 63.2 19.9 207 7-236 38-268 (906)
129 KOG0553 TPR repeat-containing 98.4 5.3E-07 1.2E-11 65.5 5.9 104 1-109 82-185 (304)
130 KOG3060 Uncharacterized conser 98.4 0.00021 4.6E-09 51.1 21.3 187 49-253 25-219 (289)
131 KOG0548 Molecular co-chaperone 98.4 7.6E-05 1.6E-09 58.7 17.3 209 6-220 230-456 (539)
132 PF08579 RPM2: Mitochondrial r 98.4 9.3E-06 2E-10 50.3 10.0 77 125-201 30-115 (120)
133 PF12895 Apc3: Anaphase-promot 98.4 3.4E-07 7.3E-12 55.3 3.7 82 13-96 2-83 (84)
134 PF08579 RPM2: Mitochondrial r 98.4 1.3E-05 2.8E-10 49.7 10.3 79 159-237 29-116 (120)
135 PRK04841 transcriptional regul 98.4 0.00015 3.2E-09 63.8 21.1 232 10-252 462-718 (903)
136 PRK04841 transcriptional regul 98.4 0.00018 3.9E-09 63.3 21.5 234 10-253 501-759 (903)
137 KOG3785 Uncharacterized conser 98.4 0.00015 3.2E-09 54.5 17.1 54 7-62 64-117 (557)
138 KOG0985 Vesicle coat protein c 98.4 0.00011 2.3E-09 62.4 18.1 150 37-207 1105-1266(1666)
139 TIGR02795 tol_pal_ybgF tol-pal 98.4 5.5E-05 1.2E-09 48.7 13.6 98 122-219 4-105 (119)
140 PF05843 Suf: Suppressor of fo 98.4 3.5E-05 7.7E-10 57.7 14.1 130 121-253 2-135 (280)
141 cd00189 TPR Tetratricopeptide 98.4 1.9E-05 4.1E-10 48.3 11.0 93 123-217 3-95 (100)
142 PRK15363 pathogenicity island 98.3 1.4E-06 3.1E-11 57.8 5.5 93 5-100 40-132 (157)
143 PLN03088 SGT1, suppressor of 98.3 3.9E-06 8.5E-11 65.0 8.7 95 3-100 5-99 (356)
144 PRK02603 photosystem I assembl 98.3 5.2E-05 1.1E-09 52.5 13.5 106 22-142 21-128 (172)
145 KOG2047 mRNA splicing factor [ 98.3 0.001 2.2E-08 54.0 22.0 240 11-252 358-613 (835)
146 CHL00033 ycf3 photosystem I as 98.3 2E-05 4.2E-10 54.4 11.2 96 5-100 4-101 (168)
147 TIGR02795 tol_pal_ybgF tol-pal 98.3 5E-05 1.1E-09 48.9 12.2 99 156-254 3-105 (119)
148 PF12895 Apc3: Anaphase-promot 98.3 2.5E-06 5.4E-11 51.4 5.6 81 168-250 2-83 (84)
149 cd00189 TPR Tetratricopeptide 98.3 4E-05 8.6E-10 46.8 11.2 95 158-254 3-97 (100)
150 PF10037 MRP-S27: Mitochondria 98.3 3.1E-05 6.7E-10 60.6 12.6 125 67-203 62-186 (429)
151 PRK10866 outer membrane biogen 98.3 0.00039 8.4E-09 51.0 17.6 58 195-252 180-239 (243)
152 KOG3617 WD40 and TPR repeat-co 98.3 0.00014 3.1E-09 60.4 16.3 176 11-218 811-995 (1416)
153 KOG3617 WD40 and TPR repeat-co 98.3 0.00014 3.1E-09 60.4 16.2 211 8-252 736-994 (1416)
154 PF01535 PPR: PPR repeat; Int 98.3 1.9E-06 4.1E-11 40.9 3.6 29 38-66 2-30 (31)
155 KOG3785 Uncharacterized conser 98.2 0.00012 2.7E-09 54.9 14.2 100 123-228 396-497 (557)
156 PF14938 SNAP: Soluble NSF att 98.2 0.00048 1E-08 51.8 17.2 197 39-248 38-257 (282)
157 PF14559 TPR_19: Tetratricopep 98.2 3.4E-06 7.4E-11 48.5 4.4 64 11-78 2-65 (68)
158 PRK02603 photosystem I assembl 98.2 0.00027 5.9E-09 48.9 14.6 86 119-205 34-121 (172)
159 KOG2376 Signal recognition par 98.2 0.00028 6E-09 56.4 15.9 181 42-252 18-202 (652)
160 PLN03088 SGT1, suppressor of 98.2 0.00016 3.4E-09 56.2 14.7 91 127-219 9-99 (356)
161 KOG0985 Vesicle coat protein c 98.2 0.00034 7.3E-09 59.6 17.0 161 10-214 1058-1218(1666)
162 PF12688 TPR_5: Tetratrico pep 98.1 0.00056 1.2E-08 43.9 14.2 109 125-237 6-118 (120)
163 KOG4162 Predicted calmodulin-b 98.1 0.0022 4.8E-08 53.0 20.5 182 34-217 321-540 (799)
164 KOG1127 TPR repeat-containing 98.1 0.00043 9.3E-09 58.7 16.7 185 14-217 472-657 (1238)
165 KOG0624 dsRNA-activated protei 98.1 0.00035 7.5E-09 52.4 14.3 208 5-219 160-370 (504)
166 CHL00033 ycf3 photosystem I as 98.1 0.00026 5.6E-09 48.9 13.2 96 120-216 35-139 (168)
167 PRK15363 pathogenicity island 98.1 0.00029 6.3E-09 47.0 12.6 99 119-219 34-132 (157)
168 PF05843 Suf: Suppressor of fo 98.1 0.00033 7.1E-09 52.6 14.4 131 37-184 2-136 (280)
169 PF06239 ECSIT: Evolutionarily 98.1 0.00018 3.8E-09 50.5 11.8 104 34-170 45-153 (228)
170 PF06239 ECSIT: Evolutionarily 98.0 0.00019 4.1E-09 50.3 11.0 87 117-203 44-151 (228)
171 KOG3616 Selective LIM binding 98.0 0.00014 3E-09 59.9 11.6 52 42-95 738-789 (1636)
172 PRK10866 outer membrane biogen 98.0 0.0026 5.5E-08 46.7 20.1 63 77-151 38-100 (243)
173 KOG0553 TPR repeat-containing 98.0 0.00022 4.8E-09 52.3 11.3 104 128-235 89-192 (304)
174 PF14938 SNAP: Soluble NSF att 98.0 0.00046 1E-08 51.9 13.6 209 10-231 45-274 (282)
175 PRK10153 DNA-binding transcrip 97.9 0.0055 1.2E-07 50.1 19.6 137 115-254 332-482 (517)
176 PF13525 YfiO: Outer membrane 97.9 0.00041 8.9E-09 49.5 11.6 58 8-65 13-71 (203)
177 COG4235 Cytochrome c biogenesi 97.9 0.0029 6.3E-08 46.7 15.6 118 15-150 137-257 (287)
178 KOG3616 Selective LIM binding 97.9 0.00046 1E-08 57.0 12.5 108 127-247 739-846 (1636)
179 KOG2053 Mitochondrial inherita 97.9 0.0032 7E-08 53.0 17.4 192 10-220 53-256 (932)
180 PF03704 BTAD: Bacterial trans 97.9 0.00059 1.3E-08 45.9 11.3 57 125-182 67-123 (146)
181 COG4235 Cytochrome c biogenesi 97.9 0.0026 5.6E-08 47.0 14.9 103 115-219 151-256 (287)
182 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.0079 1.7E-07 47.1 20.9 78 20-101 29-106 (660)
183 PF13432 TPR_16: Tetratricopep 97.8 0.00018 3.8E-09 40.9 7.2 56 128-184 5-60 (65)
184 PF12688 TPR_5: Tetratrico pep 97.8 0.0026 5.6E-08 40.9 13.7 58 42-99 7-66 (120)
185 PF13432 TPR_16: Tetratricopep 97.8 0.00014 3E-09 41.3 6.5 55 163-218 5-59 (65)
186 PRK10153 DNA-binding transcrip 97.8 0.0053 1.1E-07 50.2 17.6 143 67-228 333-489 (517)
187 PF14559 TPR_19: Tetratricopep 97.8 0.0001 2.3E-09 42.2 6.0 51 168-219 4-54 (68)
188 PF13414 TPR_11: TPR repeat; P 97.8 0.00025 5.4E-09 40.8 7.3 63 120-183 3-66 (69)
189 PF13414 TPR_11: TPR repeat; P 97.8 0.00018 3.8E-09 41.4 6.6 63 190-253 3-66 (69)
190 KOG1127 TPR repeat-containing 97.8 0.00033 7.1E-09 59.4 10.3 155 9-183 501-658 (1238)
191 PRK10803 tol-pal system protei 97.7 0.0013 2.7E-08 48.8 12.0 99 121-219 144-246 (263)
192 KOG0550 Molecular chaperone (D 97.7 0.0013 2.7E-08 50.6 11.8 244 3-253 52-349 (486)
193 PF03704 BTAD: Bacterial trans 97.7 0.0032 7E-08 42.3 12.6 98 130-228 16-139 (146)
194 KOG2796 Uncharacterized conser 97.7 0.0024 5.3E-08 46.2 11.9 134 41-184 182-315 (366)
195 PRK10803 tol-pal system protei 97.7 0.0032 6.9E-08 46.7 13.1 98 155-254 143-246 (263)
196 KOG1914 mRNA cleavage and poly 97.6 0.021 4.7E-07 45.8 19.3 176 52-242 347-527 (656)
197 PRK15331 chaperone protein Sic 97.6 8.2E-05 1.8E-09 49.9 3.9 92 6-100 43-134 (165)
198 PF13371 TPR_9: Tetratricopept 97.6 0.0005 1.1E-08 40.0 6.5 56 9-66 4-59 (73)
199 COG3118 Thioredoxin domain-con 97.6 0.017 3.6E-07 42.8 15.3 147 7-172 141-289 (304)
200 KOG2796 Uncharacterized conser 97.5 0.017 3.7E-07 42.1 17.3 174 39-229 139-323 (366)
201 PF12921 ATP13: Mitochondrial 97.5 0.0062 1.4E-07 39.6 11.4 98 119-236 1-99 (126)
202 COG4700 Uncharacterized protei 97.5 0.015 3.1E-07 40.1 18.1 128 117-248 86-216 (251)
203 PF13371 TPR_9: Tetratricopept 97.5 0.00078 1.7E-08 39.2 6.4 56 163-219 3-58 (73)
204 PF12921 ATP13: Mitochondrial 97.4 0.0097 2.1E-07 38.7 11.0 56 149-204 46-102 (126)
205 PF13424 TPR_12: Tetratricopep 97.4 0.00098 2.1E-08 39.3 6.0 61 192-252 7-73 (78)
206 PRK15331 chaperone protein Sic 97.4 0.02 4.4E-07 38.7 12.6 84 167-252 49-132 (165)
207 COG3898 Uncharacterized membra 97.3 0.048 1E-06 42.2 23.0 230 9-252 129-390 (531)
208 PF13525 YfiO: Outer membrane 97.3 0.032 6.9E-07 39.8 17.5 182 39-245 8-198 (203)
209 COG4105 ComL DNA uptake lipopr 97.3 0.04 8.6E-07 40.1 17.0 59 7-65 41-100 (254)
210 PF13281 DUF4071: Domain of un 97.2 0.062 1.3E-06 41.8 19.2 171 71-254 141-334 (374)
211 KOG1130 Predicted G-alpha GTPa 97.2 0.002 4.3E-08 49.7 7.5 248 3-252 20-342 (639)
212 PF13424 TPR_12: Tetratricopep 97.2 0.0019 4.1E-08 38.1 6.1 62 121-182 6-73 (78)
213 KOG1585 Protein required for f 97.2 0.042 9E-07 39.7 13.3 116 132-248 122-250 (308)
214 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.036 7.9E-07 43.8 13.9 68 117-184 72-141 (453)
215 PF10300 DUF3808: Protein of u 97.1 0.12 2.6E-06 42.0 16.8 166 77-253 194-375 (468)
216 PF04184 ST7: ST7 protein; In 97.1 0.11 2.5E-06 41.5 16.7 60 159-218 263-323 (539)
217 PF04053 Coatomer_WDAD: Coatom 97.0 0.035 7.6E-07 44.5 13.1 47 45-94 270-318 (443)
218 KOG0543 FKBP-type peptidyl-pro 97.0 0.037 8.1E-07 42.8 12.2 124 127-253 215-354 (397)
219 KOG0543 FKBP-type peptidyl-pro 97.0 0.011 2.4E-07 45.6 9.2 97 3-100 211-320 (397)
220 COG4700 Uncharacterized protei 97.0 0.065 1.4E-06 37.1 18.1 132 68-217 86-220 (251)
221 KOG4555 TPR repeat-containing 96.9 0.013 2.8E-07 37.8 8.0 95 6-102 49-146 (175)
222 PF09205 DUF1955: Domain of un 96.9 0.051 1.1E-06 35.2 12.4 65 156-221 87-151 (161)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.046 9.9E-07 43.3 11.9 65 153-219 73-141 (453)
224 PF04840 Vps16_C: Vps16, C-ter 96.8 0.16 3.5E-06 38.9 16.8 101 127-247 184-284 (319)
225 KOG3941 Intermediate in Toll s 96.8 0.027 5.7E-07 41.6 9.4 89 118-206 65-174 (406)
226 COG1729 Uncharacterized protei 96.7 0.14 3E-06 37.7 12.7 97 122-219 144-244 (262)
227 PF13512 TPR_18: Tetratricopep 96.7 0.0054 1.2E-07 40.4 5.0 79 4-82 14-93 (142)
228 KOG1538 Uncharacterized conser 96.6 0.1 2.2E-06 43.2 12.7 88 156-254 748-846 (1081)
229 PF04840 Vps16_C: Vps16, C-ter 96.6 0.22 4.7E-06 38.3 18.9 86 156-251 178-263 (319)
230 PF13512 TPR_18: Tetratricopep 96.6 0.1 2.2E-06 34.5 11.6 76 126-201 16-93 (142)
231 PF09205 DUF1955: Domain of un 96.5 0.1 2.3E-06 33.9 13.9 123 130-256 12-151 (161)
232 KOG3941 Intermediate in Toll s 96.5 0.046 9.9E-07 40.4 9.3 88 154-241 66-174 (406)
233 KOG0550 Molecular chaperone (D 96.5 0.29 6.2E-06 38.4 16.3 177 9-201 178-368 (486)
234 KOG2041 WD40 repeat protein [G 96.5 0.25 5.5E-06 41.4 14.2 182 14-218 748-951 (1189)
235 COG1729 Uncharacterized protei 96.5 0.044 9.5E-07 40.2 9.1 93 8-100 149-244 (262)
236 PF04053 Coatomer_WDAD: Coatom 96.5 0.3 6.5E-06 39.4 14.4 156 12-216 273-428 (443)
237 smart00299 CLH Clathrin heavy 96.4 0.15 3.2E-06 33.9 12.8 85 124-216 11-95 (140)
238 PF13428 TPR_14: Tetratricopep 96.3 0.021 4.6E-07 29.3 5.2 29 122-150 3-31 (44)
239 PF13281 DUF4071: Domain of un 96.2 0.43 9.3E-06 37.3 19.6 166 38-219 143-334 (374)
240 KOG2041 WD40 repeat protein [G 96.1 0.24 5.2E-06 41.5 12.3 65 34-100 690-763 (1189)
241 PF09613 HrpB1_HrpK: Bacterial 96.0 0.23 5E-06 33.6 10.0 69 11-83 21-89 (160)
242 PF13428 TPR_14: Tetratricopep 96.0 0.038 8.2E-07 28.3 5.2 28 192-219 3-30 (44)
243 PF13431 TPR_17: Tetratricopep 96.0 0.0076 1.6E-07 29.0 2.2 32 23-56 2-33 (34)
244 COG3629 DnrI DNA-binding trans 95.9 0.21 4.6E-06 37.3 10.4 78 121-199 154-236 (280)
245 KOG2114 Vacuolar assembly/sort 95.9 0.4 8.6E-06 41.0 12.7 118 40-181 338-457 (933)
246 PF08631 SPO22: Meiosis protei 95.9 0.52 1.1E-05 35.6 23.6 225 10-251 3-272 (278)
247 PF10602 RPN7: 26S proteasome 95.9 0.28 6E-06 34.2 10.4 97 121-217 37-140 (177)
248 KOG2610 Uncharacterized conser 95.8 0.6 1.3E-05 35.7 12.8 151 84-250 116-272 (491)
249 KOG4648 Uncharacterized conser 95.8 0.02 4.4E-07 43.4 4.8 94 3-99 100-193 (536)
250 cd00923 Cyt_c_Oxidase_Va Cytoc 95.8 0.15 3.3E-06 31.0 7.4 48 170-217 22-69 (103)
251 COG3629 DnrI DNA-binding trans 95.7 0.3 6.5E-06 36.5 10.4 79 156-235 154-237 (280)
252 PF10300 DUF3808: Protein of u 95.7 0.97 2.1E-05 37.0 17.8 163 39-218 191-375 (468)
253 KOG4234 TPR repeat-containing 95.6 0.092 2E-06 36.8 7.0 98 2-100 97-197 (271)
254 KOG2280 Vacuolar assembly/sort 95.6 1.2 2.6E-05 37.8 16.8 63 35-97 506-572 (829)
255 PF07079 DUF1347: Protein of u 95.6 0.91 2E-05 36.2 19.1 150 10-165 16-177 (549)
256 PF13176 TPR_7: Tetratricopept 95.6 0.04 8.7E-07 26.8 3.9 23 228-250 2-24 (36)
257 COG0457 NrfG FOG: TPR repeat [ 95.5 0.57 1.2E-05 33.4 24.6 222 14-253 37-264 (291)
258 KOG1920 IkappaB kinase complex 95.5 0.44 9.6E-06 42.3 11.9 115 68-214 932-1050(1265)
259 PF13176 TPR_7: Tetratricopept 95.4 0.052 1.1E-06 26.4 4.1 24 123-146 2-25 (36)
260 smart00299 CLH Clathrin heavy 95.4 0.45 9.7E-06 31.6 13.2 130 37-202 8-137 (140)
261 PF02284 COX5A: Cytochrome c o 95.4 0.13 2.7E-06 31.7 6.3 45 173-217 28-72 (108)
262 KOG2610 Uncharacterized conser 95.4 0.57 1.2E-05 35.8 10.9 118 130-250 113-234 (491)
263 COG5107 RNA14 Pre-mRNA 3'-end 95.3 1.2 2.6E-05 35.6 14.6 144 38-200 399-545 (660)
264 KOG4570 Uncharacterized conser 95.2 0.43 9.3E-06 36.1 9.7 102 150-253 59-163 (418)
265 KOG4570 Uncharacterized conser 95.2 0.74 1.6E-05 34.9 10.9 100 118-219 62-164 (418)
266 KOG1538 Uncharacterized conser 95.1 1.7 3.7E-05 36.5 14.4 88 121-219 748-846 (1081)
267 PF13170 DUF4003: Protein of u 95.1 1.1 2.3E-05 34.2 14.5 131 16-161 78-223 (297)
268 PRK11906 transcriptional regul 94.9 1.6 3.5E-05 35.1 15.7 64 119-183 337-400 (458)
269 COG3898 Uncharacterized membra 94.9 1.5 3.1E-05 34.5 20.0 195 11-229 95-300 (531)
270 PF10602 RPN7: 26S proteasome 94.8 0.87 1.9E-05 31.7 10.2 95 156-250 37-138 (177)
271 PF04184 ST7: ST7 protein; In 94.8 1.8 4E-05 35.1 12.5 63 190-252 259-322 (539)
272 COG4649 Uncharacterized protei 94.6 0.97 2.1E-05 31.1 13.4 124 130-253 68-195 (221)
273 KOG4555 TPR repeat-containing 94.6 0.77 1.7E-05 30.0 10.2 93 127-220 50-145 (175)
274 PF13431 TPR_17: Tetratricopep 94.5 0.076 1.6E-06 25.5 3.1 25 116-140 9-33 (34)
275 PF11207 DUF2989: Protein of u 94.4 1.2 2.5E-05 31.6 9.7 83 45-140 116-198 (203)
276 TIGR02561 HrpB1_HrpK type III 94.4 0.96 2.1E-05 30.2 10.4 52 13-66 23-74 (153)
277 COG3118 Thioredoxin domain-con 94.3 1.7 3.7E-05 32.7 17.3 149 80-245 143-292 (304)
278 KOG1941 Acetylcholine receptor 94.1 2.1 4.6E-05 33.3 12.5 234 7-251 13-272 (518)
279 KOG1130 Predicted G-alpha GTPa 94.0 0.23 5E-06 38.9 6.2 138 37-183 196-343 (639)
280 KOG2114 Vacuolar assembly/sort 94.0 0.88 1.9E-05 39.1 9.8 81 8-96 376-456 (933)
281 PF13170 DUF4003: Protein of u 94.0 2.1 4.7E-05 32.6 18.2 133 52-197 78-224 (297)
282 PF02259 FAT: FAT domain; Int 93.9 2.4 5.2E-05 33.1 17.1 67 187-253 143-212 (352)
283 KOG1585 Protein required for f 93.9 1.8 3.9E-05 31.7 12.0 195 8-214 39-251 (308)
284 COG4785 NlpI Lipoprotein NlpI, 93.8 1.8 3.9E-05 31.1 15.8 191 5-221 70-268 (297)
285 PF13374 TPR_10: Tetratricopep 93.8 0.22 4.7E-06 24.8 4.2 26 227-252 4-29 (42)
286 KOG4642 Chaperone-dependent E3 93.8 1.9 4.2E-05 31.4 10.6 94 2-99 12-106 (284)
287 PF00637 Clathrin: Region in C 93.4 0.037 7.9E-07 37.0 1.1 85 126-217 13-97 (143)
288 PF00515 TPR_1: Tetratricopept 93.4 0.32 6.9E-06 23.0 4.2 28 226-253 2-29 (34)
289 PF13374 TPR_10: Tetratricopep 93.4 0.3 6.6E-06 24.2 4.4 26 122-147 4-29 (42)
290 PRK15180 Vi polysaccharide bio 93.3 3.8 8.2E-05 33.3 11.9 121 128-252 297-418 (831)
291 TIGR03504 FimV_Cterm FimV C-te 93.2 0.21 4.5E-06 25.6 3.4 23 231-253 5-27 (44)
292 PF07035 Mic1: Colon cancer-as 93.2 1.9 4.1E-05 29.6 14.2 33 56-88 14-46 (167)
293 KOG1550 Extracellular protein 93.0 4.8 0.0001 33.9 19.9 179 15-220 227-427 (552)
294 PF00515 TPR_1: Tetratricopept 93.0 0.41 8.9E-06 22.6 4.3 27 122-148 3-29 (34)
295 PF11207 DUF2989: Protein of u 93.0 2.1 4.6E-05 30.3 9.0 79 165-245 117-198 (203)
296 KOG1920 IkappaB kinase complex 92.9 5.9 0.00013 35.9 13.3 179 43-248 858-1049(1265)
297 PF07719 TPR_2: Tetratricopept 92.9 0.42 9E-06 22.4 4.2 27 227-253 3-29 (34)
298 PF07163 Pex26: Pex26 protein; 92.8 2.6 5.7E-05 31.5 9.6 88 126-213 89-181 (309)
299 PF13929 mRNA_stabil: mRNA sta 92.8 3.2 7E-05 31.2 11.9 86 150-235 197-288 (292)
300 KOG1586 Protein required for f 92.7 2.9 6.3E-05 30.5 11.6 29 193-221 157-185 (288)
301 KOG2280 Vacuolar assembly/sort 92.7 2.5 5.3E-05 36.1 10.4 130 53-215 665-795 (829)
302 KOG1464 COP9 signalosome, subu 92.5 3.4 7.4E-05 30.8 13.8 189 11-210 38-251 (440)
303 COG4105 ComL DNA uptake lipopr 92.4 3.3 7.2E-05 30.5 20.0 165 73-251 37-230 (254)
304 COG4455 ImpE Protein of avirul 92.4 0.32 6.9E-06 34.7 4.4 75 5-81 6-82 (273)
305 PF02284 COX5A: Cytochrome c o 92.3 1.7 3.7E-05 26.9 8.9 61 137-198 27-87 (108)
306 PF07719 TPR_2: Tetratricopept 92.3 0.63 1.4E-05 21.8 4.4 28 122-149 3-30 (34)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 92.1 1.7 3.8E-05 26.6 9.0 63 135-198 22-84 (103)
308 PF13174 TPR_6: Tetratricopept 92.0 0.3 6.4E-06 22.7 3.0 25 229-253 4-28 (33)
309 PF13929 mRNA_stabil: mRNA sta 92.0 4.2 9.2E-05 30.6 15.6 119 133-255 141-264 (292)
310 COG4785 NlpI Lipoprotein NlpI, 91.9 3.5 7.7E-05 29.7 12.2 135 117-255 96-267 (297)
311 PF02259 FAT: FAT domain; Int 91.9 4.9 0.00011 31.3 18.6 167 11-183 9-212 (352)
312 PRK11906 transcriptional regul 91.7 6.2 0.00013 31.9 16.4 114 136-252 274-399 (458)
313 KOG4077 Cytochrome c oxidase, 91.6 2.4 5.1E-05 27.5 7.2 45 174-218 68-112 (149)
314 PF13181 TPR_8: Tetratricopept 91.5 0.75 1.6E-05 21.6 4.1 27 227-253 3-29 (34)
315 COG3947 Response regulator con 91.4 4.9 0.00011 30.4 14.9 149 88-253 150-341 (361)
316 PF00637 Clathrin: Region in C 91.4 0.055 1.2E-06 36.1 -0.1 102 117-240 39-140 (143)
317 PF07035 Mic1: Colon cancer-as 91.1 3.6 7.9E-05 28.3 14.5 135 20-183 14-148 (167)
318 PF07721 TPR_4: Tetratricopept 91.1 0.37 8E-06 21.3 2.5 21 229-249 5-25 (26)
319 PF14689 SPOB_a: Sensor_kinase 90.9 0.68 1.5E-05 25.8 4.0 29 224-252 22-50 (62)
320 TIGR03504 FimV_Cterm FimV C-te 90.7 0.81 1.8E-05 23.5 3.8 24 196-219 5-28 (44)
321 KOG0276 Vesicle coat complex C 90.6 7.5 0.00016 32.6 10.8 132 38-216 616-747 (794)
322 KOG4077 Cytochrome c oxidase, 90.3 1.7 3.6E-05 28.2 5.7 47 208-254 67-113 (149)
323 PF13181 TPR_8: Tetratricopept 90.2 1.1 2.5E-05 20.9 4.3 27 122-148 3-29 (34)
324 PF08424 NRDE-2: NRDE-2, neces 90.1 7.4 0.00016 30.2 15.7 138 116-255 15-184 (321)
325 PF09613 HrpB1_HrpK: Bacterial 89.9 4.6 0.0001 27.5 13.8 90 127-220 17-107 (160)
326 KOG0890 Protein kinase of the 89.8 22 0.00048 35.1 19.6 237 10-254 1459-1731(2382)
327 COG4455 ImpE Protein of avirul 89.7 5.3 0.00011 28.9 8.3 74 125-199 6-81 (273)
328 COG0457 NrfG FOG: TPR repeat [ 89.7 5.6 0.00012 28.1 24.0 190 49-253 36-230 (291)
329 KOG0276 Vesicle coat complex C 89.5 12 0.00025 31.6 11.4 100 130-250 647-746 (794)
330 PF07079 DUF1347: Protein of u 89.5 10 0.00022 30.7 20.9 224 20-251 245-521 (549)
331 KOG1550 Extracellular protein 89.4 12 0.00026 31.6 18.3 189 52-255 228-427 (552)
332 PF08631 SPO22: Meiosis protei 89.3 7.8 0.00017 29.3 21.2 171 46-226 3-193 (278)
333 KOG4234 TPR repeat-containing 88.9 6.7 0.00015 28.0 9.4 97 127-226 102-202 (271)
334 PF10579 Rapsyn_N: Rapsyn N-te 88.3 2.3 5.1E-05 24.9 4.9 46 167-212 18-65 (80)
335 COG4649 Uncharacterized protei 88.2 6.8 0.00015 27.2 15.5 139 71-223 59-200 (221)
336 TIGR02508 type_III_yscG type I 88.1 4.5 9.8E-05 25.1 8.2 86 135-228 20-105 (115)
337 COG1747 Uncharacterized N-term 88.0 14 0.0003 30.5 20.9 179 34-234 64-248 (711)
338 PF06552 TOM20_plant: Plant sp 87.7 6.7 0.00015 27.3 7.6 78 15-102 50-138 (186)
339 PF10579 Rapsyn_N: Rapsyn N-te 86.3 4.2 9.1E-05 23.9 5.2 46 202-247 18-65 (80)
340 COG3947 Response regulator con 86.1 4.8 0.0001 30.4 6.6 60 39-99 282-341 (361)
341 KOG1941 Acetylcholine receptor 86.0 15 0.00033 28.9 11.8 170 39-217 86-273 (518)
342 PF06552 TOM20_plant: Plant sp 85.8 9.9 0.00021 26.6 10.7 59 120-186 69-138 (186)
343 KOG0376 Serine-threonine phosp 85.7 2.1 4.6E-05 34.4 5.0 93 3-99 7-100 (476)
344 TIGR02508 type_III_yscG type I 85.6 6.5 0.00014 24.4 7.4 79 170-255 20-98 (115)
345 PRK11619 lytic murein transgly 85.1 24 0.00052 30.5 21.4 213 35-252 128-373 (644)
346 KOG1586 Protein required for f 84.9 13 0.00029 27.3 12.6 26 228-253 157-182 (288)
347 KOG4648 Uncharacterized conser 84.4 18 0.00038 28.3 9.1 79 127-214 104-182 (536)
348 KOG2066 Vacuolar assembly/sort 84.1 28 0.0006 30.4 16.9 133 10-148 366-533 (846)
349 PF11846 DUF3366: Domain of un 84.1 9.1 0.0002 27.1 7.4 53 167-219 120-173 (193)
350 KOG2297 Predicted translation 83.5 18 0.00039 27.7 13.3 72 132-209 267-340 (412)
351 TIGR02561 HrpB1_HrpK type III 83.4 11 0.00025 25.3 12.5 53 131-185 21-74 (153)
352 KOG1308 Hsp70-interacting prot 82.8 0.82 1.8E-05 35.0 1.7 96 9-108 123-219 (377)
353 COG0735 Fur Fe2+/Zn2+ uptake r 82.7 12 0.00026 25.1 8.0 60 144-204 10-69 (145)
354 PF14689 SPOB_a: Sensor_kinase 82.5 6.5 0.00014 21.9 5.1 29 189-217 22-50 (62)
355 smart00386 HAT HAT (Half-A-TPR 82.5 3.4 7.5E-05 18.7 3.7 29 14-44 1-29 (33)
356 COG0735 Fur Fe2+/Zn2+ uptake r 82.4 12 0.00027 25.1 7.3 65 176-241 7-71 (145)
357 PF14561 TPR_20: Tetratricopep 82.2 8.9 0.00019 23.3 7.8 57 115-171 17-74 (90)
358 cd00280 TRFH Telomeric Repeat 82.2 15 0.00032 25.8 8.8 49 52-100 85-140 (200)
359 KOG3364 Membrane protein invol 82.0 3.9 8.6E-05 26.9 4.3 67 34-100 30-100 (149)
360 PF09986 DUF2225: Uncharacteri 81.7 17 0.00038 26.3 10.3 22 198-219 173-194 (214)
361 smart00028 TPR Tetratricopepti 81.6 3.4 7.4E-05 18.0 3.6 26 123-148 4-29 (34)
362 COG5159 RPN6 26S proteasome re 81.5 21 0.00046 27.1 10.7 127 126-252 9-152 (421)
363 PF11846 DUF3366: Domain of un 81.4 15 0.00032 26.0 7.6 53 132-184 120-173 (193)
364 PRK15180 Vi polysaccharide bio 81.3 29 0.00063 28.6 12.2 121 12-150 301-421 (831)
365 PF04910 Tcf25: Transcriptiona 80.7 26 0.00057 27.8 18.6 129 87-218 10-167 (360)
366 PF11817 Foie-gras_1: Foie gra 80.6 17 0.00037 27.0 7.9 62 191-252 179-245 (247)
367 PRK13342 recombination factor 80.5 29 0.00063 28.1 18.1 133 53-187 154-302 (413)
368 PF09477 Type_III_YscG: Bacter 80.5 12 0.00026 23.6 8.5 82 132-220 18-99 (116)
369 PF09477 Type_III_YscG: Bacter 80.1 12 0.00027 23.5 7.9 81 168-255 19-99 (116)
370 PF11848 DUF3368: Domain of un 80.0 6.8 0.00015 20.5 5.2 32 201-232 13-44 (48)
371 COG1747 Uncharacterized N-term 79.7 34 0.00075 28.4 20.0 165 68-253 63-233 (711)
372 KOG4507 Uncharacterized conser 79.2 8.9 0.00019 32.2 6.3 88 166-254 618-705 (886)
373 PF08311 Mad3_BUB1_I: Mad3/BUB 79.0 9.3 0.0002 24.9 5.4 82 13-97 39-125 (126)
374 PF11848 DUF3368: Domain of un 78.6 7.6 0.00016 20.3 4.7 34 46-79 12-45 (48)
375 PF13762 MNE1: Mitochondrial s 78.3 18 0.00038 24.3 10.5 94 146-239 28-129 (145)
376 PF10345 Cohesin_load: Cohesin 78.0 44 0.00096 28.7 19.9 200 35-253 29-253 (608)
377 COG2976 Uncharacterized protei 77.5 23 0.0005 25.2 13.7 91 125-220 94-189 (207)
378 KOG4567 GTPase-activating prot 77.1 28 0.0006 26.8 7.8 70 175-249 263-342 (370)
379 COG0790 FOG: TPR repeat, SEL1 76.8 30 0.00065 26.2 21.1 195 7-229 48-276 (292)
380 KOG1258 mRNA processing protei 75.9 47 0.001 28.0 21.6 84 13-98 92-178 (577)
381 PRK10564 maltose regulon perip 75.7 8 0.00017 29.4 4.9 36 193-228 260-295 (303)
382 PRK10564 maltose regulon perip 75.6 8.3 0.00018 29.3 4.9 36 158-193 260-295 (303)
383 KOG2471 TPR repeat-containing 75.3 46 0.001 27.6 10.9 109 128-238 248-382 (696)
384 smart00777 Mad3_BUB1_I Mad3/BU 75.1 14 0.0003 24.1 5.3 43 53-95 80-123 (125)
385 COG2976 Uncharacterized protei 74.9 28 0.0006 24.8 15.0 89 163-253 97-187 (207)
386 KOG0890 Protein kinase of the 74.5 76 0.0017 31.9 11.4 119 41-182 1388-1510(2382)
387 PF07575 Nucleopor_Nup85: Nup8 74.4 15 0.00033 31.1 6.8 32 202-233 507-538 (566)
388 PF11663 Toxin_YhaV: Toxin wit 74.0 4.7 0.0001 26.5 2.9 29 169-199 109-137 (140)
389 PF11663 Toxin_YhaV: Toxin wit 73.3 4.6 9.9E-05 26.6 2.7 33 131-165 106-138 (140)
390 cd00280 TRFH Telomeric Repeat 73.2 30 0.00064 24.4 8.0 48 136-183 85-139 (200)
391 cd07153 Fur_like Ferric uptake 72.8 18 0.0004 22.9 5.6 48 161-208 6-53 (116)
392 cd08819 CARD_MDA5_2 Caspase ac 72.8 18 0.00039 21.8 7.4 66 139-210 21-86 (88)
393 PF01475 FUR: Ferric uptake re 72.4 15 0.00032 23.6 5.1 45 195-239 12-56 (120)
394 PF12862 Apc5: Anaphase-promot 71.9 20 0.00043 21.9 6.5 54 166-219 9-70 (94)
395 COG5187 RPN7 26S proteasome re 71.7 43 0.00093 25.6 10.0 96 154-251 114-218 (412)
396 PF09670 Cas_Cas02710: CRISPR- 71.6 51 0.0011 26.4 11.0 57 127-184 138-198 (379)
397 COG5159 RPN6 26S proteasome re 71.6 43 0.00093 25.6 11.4 133 78-217 10-152 (421)
398 KOG2908 26S proteasome regulat 71.5 47 0.001 26.0 9.3 60 124-183 79-143 (380)
399 PRK09687 putative lyase; Provi 71.0 44 0.00095 25.4 20.3 200 17-253 53-262 (280)
400 PRK09857 putative transposase; 70.7 46 0.00099 25.6 9.6 63 193-256 209-271 (292)
401 PF03745 DUF309: Domain of unk 70.6 16 0.00035 20.3 5.7 48 130-177 9-61 (62)
402 KOG2063 Vacuolar assembly/sort 69.8 84 0.0018 28.4 10.1 117 121-237 505-638 (877)
403 COG5108 RPO41 Mitochondrial DN 69.6 61 0.0013 28.1 8.8 75 125-202 33-115 (1117)
404 KOG4814 Uncharacterized conser 69.2 35 0.00076 29.2 7.4 95 5-100 359-457 (872)
405 PF07163 Pex26: Pex26 protein; 68.9 49 0.0011 25.2 9.9 90 40-143 87-181 (309)
406 PF02847 MA3: MA3 domain; Int 68.7 26 0.00057 22.0 7.8 61 124-186 6-68 (113)
407 PF12926 MOZART2: Mitotic-spin 67.4 25 0.00054 21.2 7.1 44 57-100 29-72 (88)
408 PF03745 DUF309: Domain of unk 67.3 20 0.00043 20.0 5.0 49 45-93 8-61 (62)
409 cd07153 Fur_like Ferric uptake 67.3 22 0.00048 22.5 5.1 48 41-88 5-52 (116)
410 PF04090 RNA_pol_I_TF: RNA pol 67.2 44 0.00095 23.9 7.2 60 39-99 44-104 (199)
411 PRK11639 zinc uptake transcrip 67.1 39 0.00085 23.4 8.2 65 144-209 15-79 (169)
412 PRK11639 zinc uptake transcrip 67.0 40 0.00086 23.4 7.2 55 35-89 24-78 (169)
413 PF09454 Vps23_core: Vps23 cor 67.0 21 0.00045 20.2 4.6 49 34-83 6-54 (65)
414 PF08424 NRDE-2: NRDE-2, neces 66.9 59 0.0013 25.3 16.3 146 23-186 8-185 (321)
415 PF12862 Apc5: Anaphase-promot 66.2 27 0.00059 21.2 6.7 54 130-183 8-69 (94)
416 PF10366 Vps39_1: Vacuolar sor 66.2 31 0.00067 21.8 7.7 27 192-218 41-67 (108)
417 KOG4507 Uncharacterized conser 66.1 85 0.0018 26.9 9.1 98 133-232 620-717 (886)
418 KOG1839 Uncharacterized protei 65.8 1E+02 0.0023 28.9 10.0 165 6-180 938-1124(1236)
419 PF01475 FUR: Ferric uptake re 65.5 19 0.00042 23.1 4.6 50 39-88 10-59 (120)
420 PF11768 DUF3312: Protein of u 65.4 83 0.0018 26.5 11.1 62 123-184 411-473 (545)
421 PF10345 Cohesin_load: Cohesin 63.6 98 0.0021 26.7 19.1 190 17-217 38-252 (608)
422 KOG0551 Hsp90 co-chaperone CNS 63.4 14 0.00029 28.7 3.9 93 3-97 84-179 (390)
423 PRK09462 fur ferric uptake reg 62.4 45 0.00097 22.4 7.9 64 144-208 6-70 (148)
424 PF11817 Foie-gras_1: Foie gra 61.6 64 0.0014 24.0 8.0 61 157-217 180-245 (247)
425 PRK09462 fur ferric uptake reg 60.9 48 0.001 22.3 7.4 36 135-170 32-67 (148)
426 PF09454 Vps23_core: Vps23 cor 60.5 29 0.00063 19.6 4.4 27 158-184 11-37 (65)
427 PF10255 Paf67: RNA polymerase 59.7 28 0.00061 28.0 5.2 59 124-182 126-191 (404)
428 KOG1258 mRNA processing protei 59.6 1.1E+02 0.0024 26.0 17.7 185 35-239 296-489 (577)
429 PF10255 Paf67: RNA polymerase 59.4 62 0.0014 26.2 7.0 59 159-217 126-191 (404)
430 PF11838 ERAP1_C: ERAP1-like C 59.4 80 0.0017 24.3 13.2 109 136-248 146-260 (324)
431 COG4003 Uncharacterized protei 59.1 21 0.00047 21.1 3.3 24 232-255 38-61 (98)
432 PRK10941 hypothetical protein; 59.0 77 0.0017 24.0 10.9 79 158-237 184-263 (269)
433 KOG0687 26S proteasome regulat 58.9 86 0.0019 24.5 11.3 25 192-216 106-130 (393)
434 PF09986 DUF2225: Uncharacteri 58.5 69 0.0015 23.3 11.2 97 7-103 84-197 (214)
435 PF12926 MOZART2: Mitotic-spin 57.5 40 0.00087 20.3 7.7 43 176-218 29-71 (88)
436 PF04097 Nic96: Nup93/Nic96; 57.3 1.3E+02 0.0028 26.1 15.5 45 38-84 114-158 (613)
437 KOG0292 Vesicle coat complex C 56.9 62 0.0013 29.1 6.9 112 119-254 671-782 (1202)
438 PF07575 Nucleopor_Nup85: Nup8 56.4 1.3E+02 0.0028 25.8 12.8 76 140-217 390-465 (566)
439 PF14853 Fis1_TPR_C: Fis1 C-te 56.4 30 0.00066 18.5 5.3 16 167-182 13-28 (53)
440 KOG4642 Chaperone-dependent E3 55.8 84 0.0018 23.5 11.2 101 130-234 20-126 (284)
441 COG2909 MalT ATP-dependent tra 55.8 1.6E+02 0.0034 26.6 19.9 225 11-250 426-684 (894)
442 PF04190 DUF410: Protein of un 55.5 87 0.0019 23.6 18.9 107 12-143 2-113 (260)
443 PRK08691 DNA polymerase III su 55.2 1.5E+02 0.0032 26.2 10.9 45 137-183 181-226 (709)
444 COG0790 FOG: TPR repeat, SEL1 55.1 91 0.002 23.6 22.6 181 48-255 53-267 (292)
445 KOG4567 GTPase-activating prot 54.9 99 0.0021 24.0 7.5 70 140-214 263-342 (370)
446 PF09670 Cas_Cas02710: CRISPR- 54.9 89 0.0019 25.1 7.3 55 164-219 140-198 (379)
447 PF14561 TPR_20: Tetratricopep 54.7 46 0.001 20.2 8.3 65 21-87 9-74 (90)
448 PF09868 DUF2095: Uncharacteri 54.1 56 0.0012 20.9 5.5 35 196-231 67-101 (128)
449 KOG4814 Uncharacterized conser 54.0 1.5E+02 0.0032 25.8 10.0 85 167-253 366-456 (872)
450 KOG2066 Vacuolar assembly/sort 53.7 1.6E+02 0.0035 26.1 12.4 56 42-99 362-420 (846)
451 cd08819 CARD_MDA5_2 Caspase ac 52.4 51 0.0011 20.0 6.5 68 173-246 20-87 (88)
452 PF05944 Phage_term_smal: Phag 51.9 64 0.0014 21.4 5.1 28 160-187 53-80 (132)
453 smart00804 TAP_C C-terminal do 51.9 19 0.00041 20.2 2.3 21 15-35 40-60 (63)
454 PF10366 Vps39_1: Vacuolar sor 51.7 60 0.0013 20.5 8.4 26 123-148 42-67 (108)
455 PF04762 IKI3: IKI3 family; I 51.5 1.2E+02 0.0027 27.8 8.3 28 157-184 814-843 (928)
456 KOG3364 Membrane protein invol 51.5 71 0.0015 21.4 8.9 68 152-219 29-100 (149)
457 PF02607 B12-binding_2: B12 bi 51.1 35 0.00075 19.8 3.6 27 203-229 14-40 (79)
458 KOG1308 Hsp70-interacting prot 50.8 38 0.00082 26.5 4.4 94 130-226 124-218 (377)
459 PF04097 Nic96: Nup93/Nic96; 50.6 1.7E+02 0.0037 25.4 11.8 19 129-147 423-441 (613)
460 KOG0376 Serine-threonine phosp 50.4 63 0.0014 26.5 5.8 104 128-237 12-117 (476)
461 COG2909 MalT ATP-dependent tra 49.6 2E+02 0.0044 26.0 19.7 95 82-183 426-525 (894)
462 KOG2659 LisH motif-containing 49.5 1E+02 0.0022 22.6 8.7 100 115-216 21-129 (228)
463 PF01335 DED: Death effector d 49.5 54 0.0012 19.4 4.3 39 19-59 39-77 (84)
464 PF10475 DUF2450: Protein of u 48.9 1.2E+02 0.0026 23.3 11.8 25 153-177 195-219 (291)
465 smart00777 Mad3_BUB1_I Mad3/BU 48.5 76 0.0016 20.8 9.4 43 207-249 80-123 (125)
466 PF02847 MA3: MA3 domain; Int 48.0 68 0.0015 20.1 6.0 63 159-223 6-70 (113)
467 KOG0686 COP9 signalosome, subu 47.9 1.5E+02 0.0033 24.1 15.1 188 37-233 151-352 (466)
468 KOG0403 Neoplastic transformat 47.6 1.6E+02 0.0035 24.3 14.9 25 40-64 349-373 (645)
469 PF04090 RNA_pol_I_TF: RNA pol 46.6 1.1E+02 0.0023 22.0 7.4 30 120-149 41-70 (199)
470 PF13762 MNE1: Mitochondrial s 46.5 90 0.002 21.1 11.2 84 122-205 41-130 (145)
471 PRK07003 DNA polymerase III su 45.9 2.3E+02 0.0049 25.6 11.0 85 136-223 180-278 (830)
472 COG1466 HolA DNA polymerase II 45.4 1.5E+02 0.0032 23.3 8.1 88 60-153 151-241 (334)
473 COG5116 RPN2 26S proteasome re 44.7 1.6E+02 0.0036 25.2 7.3 28 228-255 211-238 (926)
474 PF08311 Mad3_BUB1_I: Mad3/BUB 44.4 88 0.0019 20.4 9.8 43 173-215 81-124 (126)
475 PF09868 DUF2095: Uncharacteri 44.1 85 0.0018 20.1 5.3 32 41-73 66-97 (128)
476 PRK09687 putative lyase; Provi 44.1 1.4E+02 0.0031 22.7 23.5 187 34-251 35-231 (280)
477 PF15469 Sec5: Exocyst complex 43.8 1.1E+02 0.0024 21.4 8.6 24 76-99 91-114 (182)
478 TIGR03362 VI_chp_7 type VI sec 43.8 1.4E+02 0.003 23.2 6.6 57 197-253 220-278 (301)
479 KOG2034 Vacuolar sorting prote 43.7 2.5E+02 0.0055 25.5 19.5 20 43-62 396-415 (911)
480 COG4976 Predicted methyltransf 42.9 1.2E+02 0.0025 22.6 5.6 57 8-66 3-59 (287)
481 KOG0686 COP9 signalosome, subu 41.9 1.9E+02 0.0041 23.6 10.7 94 121-216 151-255 (466)
482 cd08318 Death_NMPP84 Death dom 40.9 71 0.0015 19.1 3.9 40 171-212 46-85 (86)
483 PF10475 DUF2450: Protein of u 40.7 1.7E+02 0.0036 22.5 9.7 52 126-183 104-155 (291)
484 COG4003 Uncharacterized protei 40.5 80 0.0017 18.8 5.1 25 196-220 37-61 (98)
485 PF04190 DUF410: Protein of un 40.2 1.6E+02 0.0035 22.2 13.0 124 130-253 20-169 (260)
486 PF07678 A2M_comp: A-macroglob 40.1 1.5E+02 0.0033 22.0 7.9 22 198-219 200-221 (246)
487 PF08542 Rep_fac_C: Replicatio 40.1 81 0.0018 18.7 4.4 49 188-238 3-51 (89)
488 cd08790 DED_DEDD Death Effecto 40.0 73 0.0016 19.7 3.7 58 47-106 35-92 (97)
489 PF04034 DUF367: Domain of unk 40.0 1.1E+02 0.0023 20.1 6.1 60 190-252 66-126 (127)
490 PF02184 HAT: HAT (Half-A-TPR) 39.9 45 0.00098 15.8 3.2 23 206-230 3-25 (32)
491 KOG0991 Replication factor C, 39.6 1.6E+02 0.0035 22.0 12.5 100 132-235 171-282 (333)
492 PRK14951 DNA polymerase III su 39.6 2.6E+02 0.0056 24.4 11.3 84 137-223 186-283 (618)
493 cd08812 CARD_RIG-I_like Caspas 39.3 88 0.0019 18.9 4.2 49 38-90 36-85 (88)
494 PF06957 COPI_C: Coatomer (COP 39.3 2.2E+02 0.0047 23.4 10.0 29 125-153 305-333 (422)
495 PRK10941 hypothetical protein; 39.1 1.7E+02 0.0037 22.2 10.8 58 125-183 186-243 (269)
496 PF10155 DUF2363: Uncharacteri 38.9 1.1E+02 0.0024 20.0 12.6 111 135-252 4-125 (126)
497 KOG4521 Nuclear pore complex, 38.8 3.5E+02 0.0076 25.7 15.7 167 78-248 927-1125(1480)
498 KOG0292 Vesicle coat complex C 38.6 2.4E+02 0.0052 25.8 7.7 30 70-99 671-700 (1202)
499 PF00244 14-3-3: 14-3-3 protei 38.3 1.6E+02 0.0036 21.8 9.3 40 42-81 7-46 (236)
500 KOG3807 Predicted membrane pro 38.2 2E+02 0.0044 22.7 12.6 15 86-100 231-245 (556)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-45 Score=306.77 Aligned_cols=247 Identities=21% Similarity=0.320 Sum_probs=152.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
.+|++.|++++|.++|++|.+.+.. ||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 3455556666666666666555554 566666666666666666666666666666666666666666666666666666
Q ss_pred chHHHHHHHHHh--cCCCCchhhHHhhhh---------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 88 SHGFVVLGRILR--SCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 88 ~~a~~~~~~~~~--~~~~~~~~~~~~ll~---------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
++|.++|++|.. .|+.|+..+|+.++. ++.|+..+|+.++.+|++.|++++|..+|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666666654 355566666665554 335555666666666666666666666666
Q ss_pred HHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047518 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 224 (256)
+|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 6666666666666666666666666666555
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-44 Score=304.79 Aligned_cols=249 Identities=22% Similarity=0.386 Sum_probs=240.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
..+|++.|+++.|.++|+.|.+.|.. ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 34678899999999999999999887 99999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhh-----------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------------VCKPDAITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
+++|.++|++|.+.|+.||..+|+.++. ++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999987 24789999999999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
+.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
+..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999988764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-40 Score=275.37 Aligned_cols=241 Identities=20% Similarity=0.346 Sum_probs=174.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..|.+.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|..
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 456667777777777777632 577777777777777777777777777777777777777777777777777777
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhh-----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
+.+.+++..+.+.|+.|+..+++.++. ...+|..+|+.++.+|++.|++++|..+|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 777777777777777777777777665 346788999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH-------------------------------HHHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN-------------------------------VIMDE 199 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------------~ll~~ 199 (256)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++ .+|.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999998888888887666555554 44444
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=273.62 Aligned_cols=225 Identities=24% Similarity=0.399 Sum_probs=200.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..|.+.|++++|.++|+.|.. +|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4578899999999999999842 68999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhh-----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+++|.+++..|.+.|+.|+..+++.++. ...+|..+||.||.+|++.|+.++|.++|++|.+.
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887 34689999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~ 497 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMW 497 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHH
Confidence 9999999999999999999999999999999985 588999999999999999999999998888765 344555555
Q ss_pred HHHHHHHHhcC
Q 047518 229 NTLLDGFCLTG 239 (256)
Q Consensus 229 ~~l~~~~~~~g 239 (256)
+.++.+|...|
T Consensus 498 ~~Ll~a~~~~g 508 (697)
T PLN03081 498 AALLTACRIHK 508 (697)
T ss_pred HHHHHHHHHcC
Confidence 44444443333
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.4e-39 Score=271.58 Aligned_cols=206 Identities=25% Similarity=0.304 Sum_probs=182.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
...|.+.|++++|.++|++|. . ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----R-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----C-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 456889999999999999984 3 78899999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhh-----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+.|.+++..+.+.|+.|+..+++.++. ...||..+|+.++.+|.+.|++++|..+|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 34688999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999988888888888888888888888888777777777777777777777776666666654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-39 Score=271.95 Aligned_cols=240 Identities=24% Similarity=0.361 Sum_probs=220.2
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..|.+.|+++.|.++|++|. . ||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|...+++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----E-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----C-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 45688999999999999994 3 799999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhh-----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..+.+++..+.+.|+.|+..+++.++. ...+|..+||.++.+|++.|++++|..+|.+|...|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999987 346899999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (256)
+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999999999999999999999999998888888888875 467778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 231 LLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 231 l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
++.+|++.|++++|.++|++|.+.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888877764
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.5e-20 Score=146.14 Aligned_cols=244 Identities=14% Similarity=0.063 Sum_probs=175.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCC--CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPP--PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
+..+...|++++|..+++.+......++ ....+..+...|.+.|+++.|..+|+++.+.. +++..++..++..+...
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 154 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE 154 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh
Confidence 4455677888888888887776543211 12456777777788888888888888877653 34566777777788888
Q ss_pred CCcchHHHHHHHHHhcCCCCchh----hHHhhh--------------------hhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVV----TFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
|++++|.+.++.+.+.+-.+... .+..+. ...+.+...+..+...+.+.|++++|.
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888887777654222110 111110 022334567777888899999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
..|+++...+......++..+..+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+.
T Consensus 235 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~- 311 (389)
T PRK11788 235 EALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR- 311 (389)
T ss_pred HHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 99999887644333566788888899999999999999998876 456666688888899999999999999888775
Q ss_pred CCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHhcC
Q 047518 221 VRPDAFTYNTLLDGFCL---TGRVNHAKELFVSMESMG 255 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g 255 (256)
.|+...+..++..+.. .|+.+++..++++|.+++
T Consensus 312 -~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 312 -HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred -CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 5788888877777664 558888999998888765
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.1e-19 Score=141.00 Aligned_cols=242 Identities=15% Similarity=0.099 Sum_probs=174.9
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHh
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTHSILINCFCK 83 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 83 (256)
|..+...|++++|+..|+++.+.+|. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999997664 677899999999999999999999999987643222 2567888999999
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhh--------------------hcCCC-----HHHHHHHHHHHHhcCCHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPD-----AITYNTIIDGLCKQGFVDK 138 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--------------------~~~~~-----~~~~~~l~~~~~~~~~~~~ 138 (256)
.|++++|..+|+++.+.. .++..++..+.. ..+.+ ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998752 222333332221 11111 1234556667777788888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
|...|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887776542 245566677777778888888888888877653332345677777888888888888888888776
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
. .|+...+..++..+.+.|++++|.++++++.+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5 455566677777888888888888888776653
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=2.2e-17 Score=142.25 Aligned_cols=236 Identities=14% Similarity=0.095 Sum_probs=156.6
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
...|++++|...|+++.+..|. +..++..++..+...|+++.|.++++.+.+.+ +++...+..+...+...|++++|
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPD--NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 3445555555555555443332 34445555555555555555555555554443 23445566666666677777777
Q ss_pred HHHHHHHHhcCCCCchh------------------hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047518 91 FVVLGRILRSCFTPDVV------------------TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (256)
...|+++.+.+..+... .+...+...+.+...+..+...|...|++++|...|+++.+..+
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 801 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP- 801 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-
Confidence 77777666643222110 01111223455677777777888888888888888888877653
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 232 (256)
.+..+++.+...+...|+ .+|+..++++.... +-+..++..+...+...|++++|...++++.+.+ +.+..++..+.
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 878 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLA 878 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHH
Confidence 366777777888888888 77888888877653 3345667778888889999999999999998875 34888899999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 047518 233 DGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.++.+.|++++|.+++++|++
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999998864
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=5.8e-17 Score=139.68 Aligned_cols=236 Identities=10% Similarity=0.111 Sum_probs=121.3
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
+...|++++|...|+++.+.++. +...+..++..+.+.|++++|..+++.+.+.. +.+..+|..+..++...|++++
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQ--EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455555555555555554432 34445555555555555555555555554432 2344455555555555555555
Q ss_pred HHHHHHHHHhcCCCCchhhHHhh--------------------hhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSL--------------------IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~l--------------------l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
|...|+++.+..- .+...+..+ +...+.+..++..++..+...|++++|..+++.+...
T Consensus 620 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555544310 111111111 1122334455555555666666666666666655554
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
+. .+...+..+...+...|++++|...++.+...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+.
T Consensus 699 ~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 699 HP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred Cc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 32 244455555555556666666666666655542 333445555555555666666665555555442 33455555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+...|...|++++|.+.|+++.+
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 555555556666666666555544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=2e-15 Score=124.92 Aligned_cols=243 Identities=14% Similarity=0.133 Sum_probs=184.4
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.+......|++++|+..|+++....|. +...+..+...+.+.|+++.|...++++.+.. +.+...+..+..++...|
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMD 158 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 345567789999999999999987775 66778888999999999999999999998763 335668888889999999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHh------------------hhhh-cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTS------------------LIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~------------------ll~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
++++|...++.+....-.+....... ++.. ..++...+..+..++...|++++|...++..
T Consensus 159 ~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 159 KELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988766432221111111 1111 1123334455567788889999999999988
Q ss_pred HhCCCCCchHHHHHHHHHHhccCCHHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047518 147 KDKNVKPNVVTYTSVIRGFCYANDWNE----AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222 (256)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (256)
...... +...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..... +
T Consensus 239 l~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P 315 (656)
T PRK15174 239 LARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-P 315 (656)
T ss_pred HhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 876533 56677778888888898885 788888888764 3356788888999999999999999999988763 3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 223 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+...+..+..++.+.|++++|.+.++++.+.
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45667778888899999999999999888754
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=2.4e-15 Score=124.33 Aligned_cols=224 Identities=13% Similarity=0.005 Sum_probs=157.9
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
+...|++++|+..|++.....|. +...|..+...+...|++++|...|+...+.. +.+..+|..+...+...|++++
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPR--VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 44566777777777776665443 44556666666666777777777777665553 2345566666666777777777
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 169 (256)
|...|++.++. .+.+...+..+..++.+.|++++|+..|+....... .+...++.+...+...|
T Consensus 418 A~~~~~kal~l---------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 418 AGKDYQKSIDL---------------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHc---------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcc
Confidence 77777666653 133456677788889999999999999998887632 35678888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNV------VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (256)
++++|...++.........+. ..++..+..+...|++++|..++++..... +.+...+..+...+.+.|++++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 999999999998875322111 112222333445789999999999988763 3345578889999999999999
Q ss_pred HHHHHHHHHh
Q 047518 244 AKELFVSMES 253 (256)
Q Consensus 244 a~~~~~~m~~ 253 (256)
|+++|++..+
T Consensus 561 Ai~~~e~A~~ 570 (615)
T TIGR00990 561 ALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=4.2e-15 Score=122.96 Aligned_cols=240 Identities=11% Similarity=-0.016 Sum_probs=186.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..+...|++++|+..|+++....|. +...+..+...+...|++++|...++.+...... +...+..+ ..+...|+
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~--~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSG--NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCC
Confidence 45567889999999999999887664 6778888999999999999999999988665322 33333333 34778899
Q ss_pred cchHHHHHHHHHhcCCCCchhhH--------------------HhhhhhcCCCHHHHHHHHHHHHhcCCHHH----HHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTF--------------------TSLIKVCKPDAITYNTIIDGLCKQGFVDK----AKEL 142 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~--------------------~~ll~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~ 142 (256)
+++|...++.+.+..-.++.... ...+...+.+...+..+...+...|++++ |...
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 99999999888775322222111 11112335567888899999999999986 8999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047518 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222 (256)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (256)
|++.....+. +...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...++.+... .
T Consensus 273 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~ 348 (656)
T PRK15174 273 WRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--K 348 (656)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 9999887543 67789999999999999999999999999874 335667888899999999999999999999875 3
Q ss_pred CCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 223 PDA-FTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 223 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
|+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 443 34444567889999999999999988754
No 14
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=1.3e-16 Score=119.43 Aligned_cols=240 Identities=13% Similarity=0.103 Sum_probs=88.5
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.+..+...|++++|+++++.......++.+...|..+...+...++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 466777888888888888654443312145556666666777778888888888888766422 44556666655 5677
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhh----------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
++++|.+++....+.. +++..+...+. ..+.+...|..+...+.+.|++++|+..+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777766655432 12221111111 22456777888888888888888888888
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
++..+..+. +......++..+...|+.+++..+++...+.. +.|...+..+..++...|+.++|...|++..+.. +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 888876433 56677788888888888888888888877663 4455677888888888899999999998888752 45
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
|+.....+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 77888888888888999998888877654
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.6e-16 Score=118.86 Aligned_cols=211 Identities=16% Similarity=0.167 Sum_probs=100.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh-----
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----- 114 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----- 114 (256)
.+...+.+.|+++.|++++....... .+.+...|..+...+...++++.|+..++++...+.. ++..+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 56888899999999999997655443 2345566677777888899999999999999876432 2222222222
Q ss_pred -------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHhccCCHHHHHHHHHH
Q 047518 115 -------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180 (256)
Q Consensus 115 -------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 180 (256)
...+++..+..++..+.+.++++++..++..+.... .+.+...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 123566777888899999999999999999977543 345778888899999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 181 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+.. +.|......++..+...|+.+++..+++...+.. +.++..+..+..+|...|+.++|+.++++..+.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99874 2357788899999999999999999998887753 556677889999999999999999999987763
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=4.5e-14 Score=116.84 Aligned_cols=243 Identities=13% Similarity=0.067 Sum_probs=151.2
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
+...|..+.+.|++++|+..|++.....| +...|..+..+|.+.|+++.|+..++...+.. +.+...|..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34567788899999999999999988554 55678899999999999999999999998874 335668888999999
Q ss_pred hcCCcchHHHHHHHHHhcCC----------------------------CCc----h------------------------
Q 047518 83 KMGRVSHGFVVLGRILRSCF----------------------------TPD----V------------------------ 106 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~----------------------------~~~----~------------------------ 106 (256)
..|++++|+..|..+....- .|. .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999765543321100 000 0
Q ss_pred -----------------------------hhHHhhhhh---cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 047518 107 -----------------------------VTFTSLIKV---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 107 -----------------------------~~~~~ll~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
..+...+.. .+.....|..+...+...|++++|+..|+........ +
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 000000000 0122334555566666677777777777766654321 3
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
...|..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 4455555666666666666666666665542 2234555555556666666666666666555542 2234444455555
Q ss_pred HHhcCChhHHHHHHHHHH
Q 047518 235 FCLTGRVNHAKELFVSME 252 (256)
Q Consensus 235 ~~~~g~~~~a~~~~~~m~ 252 (256)
+.+.|++++|+..+++..
T Consensus 443 ~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555544
No 17
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.6e-13 Score=107.45 Aligned_cols=233 Identities=11% Similarity=0.081 Sum_probs=184.4
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
.+.|+++.|.+.|.++.+..+. +...........+...|+++.|...++.+.+.. +-+...+..+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~-~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADN-DQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHH
Confidence 5789999999999999774433 111222233678889999999999999998875 34677888999999999999999
Q ss_pred HHHHHHHHhcCCCCchh-------hHHhhh--------------------hhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 91 FVVLGRILRSCFTPDVV-------TFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-------~~~~ll--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
..++..+.+.+..++.. ++..++ ...+.++.....+...+...|+.++|..++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999876553221 111111 123457788889999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
.+..+. +|+.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+...+. .|
T Consensus 287 ~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P 359 (398)
T PRK10747 287 LDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP 359 (398)
T ss_pred HHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 999885 3444322 3444456699999999999999874 346667889999999999999999999999985 79
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+...+..+...+.+.|+.++|.+++++-.
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999998754
No 18
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=6.3e-14 Score=101.16 Aligned_cols=230 Identities=10% Similarity=0.093 Sum_probs=186.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHh
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTHSILINCFCK 83 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 83 (256)
|-.+.-.+++++|.+.|-+|.+..+. +..+.-.|.+.|.+.|..++|+++.+.+.++.-.+. ......|..-|..
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 34456678999999999999996654 677788899999999999999999999987632211 2245566777888
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch----HHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV----VTYT 159 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 159 (256)
.|-++.|+.+|..+.+.+. .-..+...|+..|....+|++|+++-.++.+.+..+.. ..|.
T Consensus 120 aGl~DRAE~~f~~L~de~e---------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGE---------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred hhhhhHHHHHHHHHhcchh---------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 9999999999999988532 22345677899999999999999999999887655442 4567
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
-+...+....+.+.|..++.+..+.+ +..+..--.+.+.....|+++.|.+.++...+++...-+.+...|..+|.+.|
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 77777778889999999999998875 33555666778889999999999999999999876666778899999999999
Q ss_pred ChhHHHHHHHHHHhc
Q 047518 240 RVNHAKELFVSMESM 254 (256)
Q Consensus 240 ~~~~a~~~~~~m~~~ 254 (256)
+.++...++.++.+.
T Consensus 264 ~~~~~~~fL~~~~~~ 278 (389)
T COG2956 264 KPAEGLNFLRRAMET 278 (389)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999887653
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=7.7e-14 Score=122.71 Aligned_cols=241 Identities=14% Similarity=0.079 Sum_probs=185.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..+...|++++|+..|++..+..|. +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~--~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCC
Confidence 34456789999999999999998775 66778889999999999999999999998753 2344555555556677889
Q ss_pred cchHHHHHHHHHhcCCCCchhhH-------------------------HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTF-------------------------TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (256)
.++|...++.+......++.... ..++...+.+...+..+...+.+.|++++|+.
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 99998888776443222221110 11122345667778889999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.|+...+..+. +...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|.++++.+.....
T Consensus 625 ~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 625 AYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999987543 67888999999999999999999999887653 23456677788889999999999999999986432
Q ss_pred --CC---CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 222 --RP---DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 222 --~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+| +...+..+...+...|++++|++.|++..
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 22456666788899999999999998875
No 20
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=7.7e-13 Score=104.12 Aligned_cols=242 Identities=10% Similarity=-0.004 Sum_probs=181.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
....+.|+++.|.+.+++..+..+. +.....-.....+.+.|+++.|...++.+.+.. +-+..++..+...+...|++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 3345679999999999998765543 222233445778888999999999999998885 33667888999999999999
Q ss_pred chHHHHHHHHHhcCCCCchhh-------HHhhhh----------------hc----CCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 88 SHGFVVLGRILRSCFTPDVVT-------FTSLIK----------------VC----KPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~-------~~~ll~----------------~~----~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
+.|.+.+..+.+.+..+.... +...+. .. +.++..+..+...+...|++++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 999999999998865433321 111111 11 137889999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 141 ELFLKMKDKNVKPNVVTY-TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV--VTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.++++..+.........+ ..........++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+...
T Consensus 284 ~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 284 EIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 999999987433221111 112222244578889999998888762 2234 567788999999999999999999644
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
.....|+...+..+...+.+.|+.++|.+++++-.
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44457899999999999999999999999998753
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=6.4e-13 Score=96.71 Aligned_cols=201 Identities=11% Similarity=0.065 Sum_probs=167.0
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 4567888999999999999999999998764 3356788889999999999999999999998752
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+...+..+...+...|++++|...+........ ......+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 96 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 173 (234)
T TIGR02521 96 -PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLL 173 (234)
T ss_pred -CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHH
Confidence 23455677888999999999999999999987532 2234567778888999999999999999998864 33566788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8999999999999999999998876 3556677778888899999999999998887654
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=99.64 E-value=4e-13 Score=109.54 Aligned_cols=218 Identities=13% Similarity=0.079 Sum_probs=163.5
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHH---------ccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLA---------KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
.+++++|+..|++..+..|. +...|..+..++. ..+++++|...+++..+.. +.+...+..+...+..
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 45678999999999987765 5566766665544 2345789999999998875 3366788888888999
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (256)
.|++++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+..+. +...+..++.
T Consensus 351 ~g~~~~A~~~~~~Al~l~---------------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~ 414 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS---------------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLW 414 (553)
T ss_pred ccCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 999999999999998852 335667888899999999999999999999887554 2223333444
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChh
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 242 (256)
.+...|++++|...+++......+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| +
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~ 490 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--E 490 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--H
Confidence 56678999999999999887642224555777888889999999999999987664 344 334455556667766 4
Q ss_pred HHHHHHHHHHh
Q 047518 243 HAKELFVSMES 253 (256)
Q Consensus 243 ~a~~~~~~m~~ 253 (256)
+|...++++.+
T Consensus 491 ~a~~~l~~ll~ 501 (553)
T PRK12370 491 RALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=1.9e-12 Score=110.55 Aligned_cols=216 Identities=11% Similarity=-0.016 Sum_probs=168.3
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 93 (256)
+++++|+..|.+.....| +......+...+.+.|++++|...|+++... +|+...+..+..++.+.|++++|..+
T Consensus 490 ~~~~eAi~a~~~Al~~~P---d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQP---DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CCcHHHHHHHHHHHHhCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 678888888888777553 3222333344556889999999999987654 44555566777788889999999999
Q ss_pred HHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHH
Q 047518 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 173 (256)
+++..+.. |+ +...+..+.....+.|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 565 l~qAL~l~--P~-------------~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 565 LQQAEQRG--LG-------------DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHHhcC--Cc-------------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 98888752 22 22233334445556799999999999998764 467888999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
|+..+++..... +.+...++.+..++...|++++|...++...+.. +-+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999874 3456788888889999999999999999998863 45677889999999999999999999998765
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=5.2e-13 Score=97.18 Aligned_cols=195 Identities=9% Similarity=0.047 Sum_probs=161.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..+...|++++|...|++..+..|. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDPD--DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc
Confidence 45567889999999999999887654 67788899999999999999999999998775 3456778888999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...+++..+.... ......+..+...+...|++++|...+.+....... +...+..+...+.
T Consensus 115 ~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 180 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHHHhcccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHH
Confidence 99999999999874211 123445677888999999999999999999876433 5667888899999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999877 3446677778888889999999999998887653
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.61 E-value=8e-14 Score=108.94 Aligned_cols=235 Identities=14% Similarity=0.164 Sum_probs=130.7
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
-+-..|+...|++.|++..+..|.- ...|-.|...|...+.+++|+..|.+..... +.....|..+...|...|.++
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkldP~f--~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLDPNF--LDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCCCcc--hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHH
Confidence 3445677777777777777665542 3346667777777777777777666665442 223345555555566666666
Q ss_pred hHHHHHHHHHhcCCCCc---------------------hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 89 HGFVVLGRILRSCFTPD---------------------VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~---------------------~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
.|+..|++.++. .|+ ...|+..+..++....+.+.|..+|...|.++.|..+|....
T Consensus 304 lAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 304 LAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 666666655543 111 111222222333444555555666666666666666665555
Q ss_pred hCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H
Q 047518 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-A 225 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 225 (256)
.-... -....+.|...|-+.|++++|+..+++.++- .|+ ...|+.+...|-..|+.+.|.+.+.+.... .|+ .
T Consensus 382 ~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~A 456 (966)
T KOG4626|consen 382 EVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFA 456 (966)
T ss_pred hhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHH
Confidence 43221 2344555666666666666666666666553 333 345555666666666666666666665543 232 3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..++.|...|...|++.+|++-+++..+
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 4556666666666666666666655443
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.60 E-value=1.3e-12 Score=115.06 Aligned_cols=225 Identities=10% Similarity=0.060 Sum_probs=152.2
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC-CHhhH-----------
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTH----------- 74 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~----------- 74 (256)
|..+...|++++|+..|++..+..|. +...+..+...+.+.|++++|+..|++..+..... ....|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45567889999999999999987765 77789999999999999999999999988764221 11112
Q ss_pred -HHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 75 -SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 75 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
......+.+.|++++|+..|+++.+. . +.+...+..+..++...|++++|++.|++..+....
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~--~-------------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~- 417 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV--D-------------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG- 417 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--C-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 12244677889999999999999885 2 234556777888888999999999999888775432
Q ss_pred chHHHHHHHH------------------------------------------HHhccCCHHHHHHHHHHHHHcCCCCcHH
Q 047518 154 NVVTYTSVIR------------------------------------------GFCYANDWNEAKRLFIEMMDQGVQPNVV 191 (256)
Q Consensus 154 ~~~~~~~li~------------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 191 (256)
+...+..+.. .+...|++++|...+++..+.. +-+..
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~ 496 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVW 496 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 3333333333 3344566666666666666553 12344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
.+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|++++|+..++++
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 55666666677777777777777666532 224444444444555666666666666543
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=5.7e-14 Score=110.11 Aligned_cols=229 Identities=18% Similarity=0.128 Sum_probs=159.2
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCC-CCc-------------------------------ccHHHHHHHHHccCCh
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSP-PPV-------------------------------SSFNIMLGCLAKNKHY 52 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-------------------------------~~~~~l~~~~~~~~~~ 52 (256)
..|.+|...+++++|..+|+.+.+..|.. .+. .+|-++..+|.-+++.
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh 437 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDH 437 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHH
Confidence 34677888899999999999888766531 223 3344444444444444
Q ss_pred HHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH
Q 047518 53 DTVLSLFKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~ 131 (256)
+.|++.|++..+. .| ...+|+.+..-+....+++.|...|+..+.. + +.+-.+|-.|...|.
T Consensus 438 ~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~-----------~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 438 DTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----D-----------PRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----C-----------chhhHHHHhhhhhee
Confidence 4555544444443 22 3344444444444444444444444444331 1 222335556788999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
+.++++.|+-.|+...+.++. +.+....+...+.+.|+.++|+++++++.....+ |...--.-+..+...+++++|..
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred ccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHH
Confidence 999999999999999988765 6667777888889999999999999999987543 55555555677788999999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.++++.+. ++-+..+|..+...|.+.|+.+.|+.-|--+.+
T Consensus 579 ~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 579 ELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 99999985 344566788888999999999999987766654
No 28
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.59 E-value=1.3e-12 Score=102.29 Aligned_cols=213 Identities=12% Similarity=0.098 Sum_probs=166.7
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
-|..+|.++-|++.|++.+...|..| ..|+.|..++...|+..+|.+.|.+..... +......+.|...|...|.++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~--~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFP--DAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCch--HHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccch
Confidence 35677888888888888887766533 458888888888888888888888877663 224567778888888888888
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
.|..+|....+. .+.-...++.|...|-..|++++|+..|++.....+. -..+|+.+-..|-..
T Consensus 372 ~A~~ly~~al~v---------------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 372 EATRLYLKALEV---------------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHHhh---------------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHh
Confidence 888888877763 2334567899999999999999999999999875322 457899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhH
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 243 (256)
|+.+.|.+.+.+.+..+ +.-...++.|...|-.+|++.+|++-++...+. +|| +..|..++.+..-..+|.+
T Consensus 436 g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999864 224678899999999999999999999999875 555 3466666666544444433
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=2e-12 Score=105.46 Aligned_cols=220 Identities=12% Similarity=0.044 Sum_probs=162.7
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
..+++++|...+++..+..|. +..++..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|+
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHN--NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 557789999999999998775 77889899999999999999999999998875 335678888999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 171 (256)
..++++.+.. |+ +...+..++..+...|++++|...+++......+-+...+..+..++...|+.
T Consensus 393 ~~~~~Al~l~--P~-------------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 393 QTINECLKLD--PT-------------RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHHHhcC--CC-------------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 9999998852 22 22223334445667899999999999987664332455577778888899999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
++|...++++.... +.+....+.+...+...| ++|...++.+.+.. -.+.. ...+...|.-.|+.+.+..+ ++
T Consensus 458 ~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~ 531 (553)
T PRK12370 458 ELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NK 531 (553)
T ss_pred HHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HH
Confidence 99999999987652 223444555666677777 47888787776531 11211 22244556667777777766 87
Q ss_pred HHhcC
Q 047518 251 MESMG 255 (256)
Q Consensus 251 m~~~g 255 (256)
+.+.|
T Consensus 532 ~~~~~ 536 (553)
T PRK12370 532 FKNED 536 (553)
T ss_pred hhccc
Confidence 77654
No 30
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=5.4e-11 Score=88.51 Aligned_cols=223 Identities=11% Similarity=0.069 Sum_probs=162.9
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
.-.|+|..|++...+-.+.+.. ....|..-+.+.-+.|+.+.+-.++.+.-+..-.++...+-.........|+++.|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 4578999999998887776665 44566677778888899999999998887764455666777777778888888888
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP----------------- 153 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 153 (256)
..-+.++.+.+ +.++........+|.+.|++.+...++..+.+.|.--
T Consensus 173 ~~~v~~ll~~~---------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 173 RENVDQLLEMT---------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHHHHHhC---------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 88888877742 3445556666777777777777777777766655421
Q ss_pred ------------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC----------------------
Q 047518 154 ------------------------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ---------------------- 187 (256)
Q Consensus 154 ------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---------------------- 187 (256)
++..-..++.-+...|+.++|.++.++..+.+..
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHH
Confidence 1222233344455666677777766665544322
Q ss_pred --------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 188 --------PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 188 --------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
-+.-.+.++...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.++.++-.
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 23466788899999999999999999988775 7899999999999999999999999887643
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.55 E-value=1.9e-11 Score=104.51 Aligned_cols=219 Identities=9% Similarity=0.050 Sum_probs=167.3
Q ss_pred cCChhhHHHHHHHHHHhCCC-CC--CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 13 TITPNEALCIFDYMLRMHPS-PP--PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
.|+..++....+...+.-+. |+ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHH
Confidence 45555555555555554433 34 56678888888776 8899999988887765 3665444445555678999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 169 (256)
|...++++... +|+...+..+..++.+.|++++|...++...+.... +...+..+.......|
T Consensus 528 Ai~~~rka~~~----------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~G 590 (987)
T PRK09782 528 ALAAWQKISLH----------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHhcc----------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCC
Confidence 99999987653 233344566778889999999999999999887532 3334444444555669
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (256)
++++|...+++..+. .|+...+..+..++.+.|++++|...+++..... +.+...+..+..++...|+.++|++.++
T Consensus 591 r~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999986 4678889999999999999999999999999873 4567788888889999999999999999
Q ss_pred HHHhc
Q 047518 250 SMESM 254 (256)
Q Consensus 250 ~m~~~ 254 (256)
+..+.
T Consensus 668 ~AL~l 672 (987)
T PRK09782 668 RAHKG 672 (987)
T ss_pred HHHHh
Confidence 87653
No 32
>PF13041 PPR_2: PPR repeat family
Probab=99.54 E-value=3.3e-14 Score=76.78 Aligned_cols=50 Identities=46% Similarity=0.917 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (256)
||..+||.++.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666777777777777777777777777777777777777777776653
No 33
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=3.9e-13 Score=97.50 Aligned_cols=227 Identities=13% Similarity=0.086 Sum_probs=187.7
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhh-HHHHHHHHHhc
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-HSILINCFCKM 84 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 84 (256)
.|..|.+.|.+.+|.+-|+..++..+ -+.+|..|-..|.+.+++..|+.+|.+-.+. .|-..| ..-+.+.+-..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~---~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFP---HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCC---chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 35667889999999999999887554 4567999999999999999999999988765 454444 44566777888
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (256)
++.++|.++|+...+. .+.++.....+...|.-.++++-|++.|+++.+.|+. +...|+.+--+
T Consensus 304 ~~~~~a~~lYk~vlk~---------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLC 367 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL---------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLC 367 (478)
T ss_pred HhHHHHHHHHHHHHhc---------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHH
Confidence 9999999999998885 1334555666677888999999999999999999987 88899999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 047518 165 FCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 242 (256)
|...++++-++..|++....--.|+ ...|..+.......|++..|.+.|+-....+ .-+...++.|.-.-.+.|+++
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchH
Confidence 9999999999999999886543344 4578888888899999999999999988764 446678888888888999999
Q ss_pred HHHHHHHHHHhc
Q 047518 243 HAKELFVSMESM 254 (256)
Q Consensus 243 ~a~~~~~~m~~~ 254 (256)
+|..+++...+.
T Consensus 447 ~Arsll~~A~s~ 458 (478)
T KOG1129|consen 447 GARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHhhhh
Confidence 999999877653
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=4.5e-11 Score=93.78 Aligned_cols=220 Identities=9% Similarity=0.049 Sum_probs=162.1
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHH--HHHHHHHhcCCcc
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS--ILINCFCKMGRVS 88 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 88 (256)
.-.|+++.|++.+....+.... ....|........+.|+++.|...++++.+. .|+..... .....+...|+++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 4479999999888876553222 2223444455558999999999999999875 45554333 3366888999999
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP--------------- 153 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 153 (256)
.|...++++.+.. +.++.....+...|.+.|+|++|..++..+.+.+..+
T Consensus 171 ~Al~~l~~~~~~~---------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 171 AARHGVDKLLEVA---------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999998852 3456677888999999999999999988887654432
Q ss_pred --------------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 154 --------------------------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 154 --------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
+......+...+...|+.++|...+++..+. .|+.... ++.+....++.+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChH
Confidence 2223334456677888889999988888874 4454322 233334568888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
++.+..+...+.. +-|+..+..+...|.+.|+|++|.+.|+...+.
T Consensus 312 ~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 312 QLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999998888763 556777889999999999999999999988764
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=4.1e-12 Score=91.96 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=142.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPV--SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
|+.|.+.|.+|+|+++.+.+......+-+. ...-.|..-|...|-+++|+.+|..+.+.| .--......|+..|-..
T Consensus 76 GnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~t 154 (389)
T COG2956 76 GNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQAT 154 (389)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHh
Confidence 444555566666666665555433221111 123345555555566666666665555543 12334455555555555
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhh------------------------hhhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSL------------------------IKVCKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
.+|++|+.+-+++.+.+-.+...-...+ +...+.++.+--.+.+.+...|+++.|.
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV 234 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAV 234 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHH
Confidence 5566655555555554322211100000 0011223334445667788888888888
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
+.++.+.+.++..-..+...|..+|.+.|+.++...++..+.+... ....-..+...-....-.+.|...+.+-...
T Consensus 235 ~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r- 311 (389)
T COG2956 235 EALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR- 311 (389)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh-
Confidence 8888888887666667778888888888888888888888887633 3334444444444555566666666555554
Q ss_pred CCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHh
Q 047518 221 VRPDAFTYNTLLDGFCL---TGRVNHAKELFVSMES 253 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 253 (256)
+|+...+..++..-.. .|.+.+.+.+++.|..
T Consensus 312 -~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 312 -KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred -CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 6899999999886543 3556777777777764
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=5.1e-12 Score=94.95 Aligned_cols=205 Identities=14% Similarity=0.233 Sum_probs=118.1
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch-
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH- 89 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 89 (256)
++--..++|..++++....... .+..+||.+|.+-.-.. -.++..+|....+.||..|+|.++++..+.|+++.
T Consensus 218 ~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~a 292 (625)
T KOG4422|consen 218 CKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDA 292 (625)
T ss_pred HHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHH
Confidence 3334455555555554443333 34455555554332221 14555666666677777777777777777776654
Q ss_pred ---HHHHHHHHHhcCCCCchhhHHhhhh------------------------------hcCCCHHHHHHHHHHHHhcCCH
Q 047518 90 ---GFVVLGRILRSCFTPDVVTFTSLIK------------------------------VCKPDAITYNTIIDGLCKQGFV 136 (256)
Q Consensus 90 ---a~~~~~~~~~~~~~~~~~~~~~ll~------------------------------~~~~~~~~~~~l~~~~~~~~~~ 136 (256)
|.+++.+|.+.|+.|...+|.-+|. ..+.|...|...+..|.+..+.
T Consensus 293 r~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~ 372 (625)
T KOG4422|consen 293 RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDL 372 (625)
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhH
Confidence 3455666777777777777766664 1123445566667777777777
Q ss_pred HHHHHHHHHHHhCC----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHH
Q 047518 137 DKAKELFLKMKDKN----VKPN---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 137 ~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 209 (256)
+.|.++-..+.... +.|+ ..-|..+....++....+.....|+.|+-.-.-|+..+...++++..-.|.++-.
T Consensus 373 ~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~i 452 (625)
T KOG4422|consen 373 ELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVI 452 (625)
T ss_pred HHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhH
Confidence 77777665554321 1222 1234455555566666666666666666555556666666666666666666666
Q ss_pred HHHHHHHHHCC
Q 047518 210 SSLLDLMIQHG 220 (256)
Q Consensus 210 ~~~~~~~~~~~ 220 (256)
-++|.++...|
T Consensus 453 pRiw~D~~~~g 463 (625)
T KOG4422|consen 453 PRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHhh
Confidence 66665555433
No 37
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=5.2e-14 Score=75.99 Aligned_cols=49 Identities=45% Similarity=0.999 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666666554
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.8e-12 Score=101.87 Aligned_cols=220 Identities=15% Similarity=0.076 Sum_probs=167.3
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC---------------------------
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--------------------------- 66 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------- 66 (256)
=+..+|+..|.++..+... +......+..+|...+++++|.++|+.+++..
T Consensus 333 y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 3567899999996554443 44566788999999999999999999887652
Q ss_pred ------CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 67 ------LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 67 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
-+..+.+|..+..+|.-+++.+.|++.|++..+.. +....+|+.+..-+.....+|.|.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---------------p~faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---------------PRFAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---------------CccchhhhhcCChhhhhHHHHhHH
Confidence 01245678888888888888888888888887741 224567777777778888888888
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
..|+........ +-.+|-.+...|.++++++.|+-.|+...+-+ +-+.+....+...+-+.|+.++|+++++++...+
T Consensus 476 ~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 476 KSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 888877765332 34455556677889999999999999998875 3367777888888899999999999999988764
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+-|+..-..-+..+...++.++|+..++++++
T Consensus 554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 554 -PKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 33555555566777888999999999998875
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.52 E-value=5.4e-11 Score=100.79 Aligned_cols=224 Identities=14% Similarity=0.087 Sum_probs=168.0
Q ss_pred hhHHHHHHHHHHhCCCCCCccc-HH----HHHHHHHccCChHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCcchH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSS-FN----IMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~-~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 90 (256)
++|+..++.+.+..+..|+... +. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 7789999998865333233321 11 1134456779999999999999887632 332 223357789999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCc---hH
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-----------KPN---VV 156 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~ 156 (256)
+.+|+++.+.. |.. ..........+..++...|++++|..+++.+..... .|+ ..
T Consensus 292 ~~~l~~~l~~~--p~~---------~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 292 QSILTELFYHP--ETI---------ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHHHHHhhcC--CCC---------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 99999988642 211 001123455667788999999999999999987532 123 23
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
.+..+...+...|+.++|+..++++.... +.+...+..+...+...|++++|++.+++..... +.+...+...+..+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHH
Confidence 45667778889999999999999998874 4567889999999999999999999999999863 345677778888899
Q ss_pred hcCChhHHHHHHHHHHhc
Q 047518 237 LTGRVNHAKELFVSMESM 254 (256)
Q Consensus 237 ~~g~~~~a~~~~~~m~~~ 254 (256)
+.|++++|.++++++++.
T Consensus 439 ~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 40
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.5e-11 Score=92.56 Aligned_cols=212 Identities=20% Similarity=0.292 Sum_probs=160.3
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHhcCCcchH-HHHHHHHHhcCCCCc-----hh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC--FCKMGRVSHG-FVVLGRILRSCFTPD-----VV 107 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a-~~~~~~~~~~~~~~~-----~~ 107 (256)
+.+=|.|+.. ...|...++.-+|+.|.+.|++.+...-..|+.. |....+..-+ .+.|-.|.+.|-... -.
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455666654 5678899999999999999988777665555543 3333333322 334445555443221 11
Q ss_pred hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.-..+....+.+..++.+||.+.++-...+.|..+|++......+.+..+||.+|.+-+... ..+++.+|....++
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 12223345577889999999999999999999999999998888889999999998754433 37889999999999
Q ss_pred CcHHHHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH-HHHHHHHHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDE----ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH-AKELFVSME 252 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~ 252 (256)
||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|.-+.+.++..+ |..++.++.
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 999999999999999998765 56778889999999999999999999999888755 444555543
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.3e-11 Score=91.35 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=138.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
.|..++.+-|+-.++.++|..+|++.++.+ +....+|+.+..-|....+...|...|+...+..+
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---------------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN---------------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC---------------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 344455556666778889999999988852 34566888899999999999999999999998865
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
. |-..|-.+-++|.-.+...-|+-.|++..... +-|.+.|.+|..+|.+.++.++|++.|......| ..+...+..+
T Consensus 396 ~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~L 472 (559)
T KOG1155|consen 396 R-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRL 472 (559)
T ss_pred h-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHH
Confidence 4 88899999999999999999999999999874 4578999999999999999999999999998876 3366789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 047518 232 LDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
...|.+.++.++|...+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999998877554
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.49 E-value=1.1e-10 Score=98.13 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=165.2
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..+...|++++|+++|+++.+..|. +...+..++..+.+.++.++|++.++++... .|+...+..++..+...++.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 3556779999999999999988776 5566777788888999999999999998776 45555554444444445566
Q ss_pred chHHHHHHHHHhcCCCCc-hhhHHhhhh----------------------------------------------------
Q 047518 88 SHGFVVLGRILRSCFTPD-VVTFTSLIK---------------------------------------------------- 114 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~-~~~~~~ll~---------------------------------------------------- 114 (256)
.+|++.++++.+.. |+ ...+..+..
T Consensus 186 ~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 56888888888752 32 111111111
Q ss_pred ------------------hcCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH
Q 047518 115 ------------------VCKPDA-ITY----NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 115 ------------------~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 171 (256)
...|.. ..| -=.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 011211 111 123456777888888888888888887665666778888888888888
Q ss_pred HHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCCH---HhHHHHH
Q 047518 172 NEAKRLFIEMMDQG-----VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-----------RPDA---FTYNTLL 232 (256)
Q Consensus 172 ~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~ 232 (256)
++|+.+++.+.... ..++......|..++...+++++|..+++.+.+... .|+. ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 88888888886542 122344456788888888888888888888876311 1222 2345566
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 047518 233 DGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+...|+..+|.+.++++...
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6778888888888888887654
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=2.1e-10 Score=90.45 Aligned_cols=219 Identities=7% Similarity=0.017 Sum_probs=153.4
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhcCCc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTHSILINCFCKMGRV 87 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 87 (256)
....|+++.|.+.+.+..+..+. +...+-.....+.+.|+++.|.+.+++..+.. |+. .........+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 45689999999999988775443 33344556678888999999999999987653 443 3444457788899999
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------------
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-------------- 153 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------- 153 (256)
+.|...++.+.+.. +.++.++..+...+...|++++|...+..+.+.++.+
T Consensus 170 ~~Al~~l~~l~~~~---------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 170 HAARHGVDKLLEMA---------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999863 3355667777888888888888888888777654321
Q ss_pred ---------------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHH---HHHHHHHHHhc
Q 047518 154 ---------------------------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT---FNVIMDELCKN 203 (256)
Q Consensus 154 ---------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~ 203 (256)
+...+..+...+...|+.++|.+.+++..+.. ||... ...........
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCC
Confidence 23334444455667778888888888877753 33321 11111222334
Q ss_pred CChhHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 204 GKMDEASSLLDLMIQHGVRPDA--FTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
++.+.+.+.++...+. .+-++ ....++...+.+.|++++|.+.|+.
T Consensus 313 ~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred CChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6677777777777664 23344 5667888889999999999999983
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.47 E-value=2.3e-10 Score=97.07 Aligned_cols=235 Identities=11% Similarity=0.110 Sum_probs=115.2
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.|+.++|++++.+.....+ .+...+..+...+...|++++|..+|++..+.. +.+...+..+..++...|++++|..
T Consensus 28 ~g~~~~A~~~~~~~~~~~~--~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQ--LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555566655555544222 233445555555666666666666666555442 2233444455555555666666666
Q ss_pred HHHHHHhcCCCCchhhHHhhh--------------------hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 047518 93 VLGRILRSCFTPDVVTFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD---- 148 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 148 (256)
.++++.+. .|+...+..+- ...+.+...+..+..++...+..++|+..++....
T Consensus 105 ~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 105 KAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 66555543 11111010000 01233455555666666666766655544442211
Q ss_pred ------------------------------------------C-CCCCchH-HHH----HHHHHHhccCCHHHHHHHHHH
Q 047518 149 ------------------------------------------K-NVKPNVV-TYT----SVIRGFCYANDWNEAKRLFIE 180 (256)
Q Consensus 149 ------------------------------------------~-~~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~ 180 (256)
. ...|+.. .+. ..+..+...|++++|...|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 0 0001110 010 002233455666677777776
Q ss_pred HHHcCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 181 MMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP---DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 181 ~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++|.++++++.+
T Consensus 263 ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 263 LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 6655421 221 11223556666777777777777665432110 123445555566677777777777766654
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=2.6e-10 Score=85.90 Aligned_cols=224 Identities=12% Similarity=-0.023 Sum_probs=160.3
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPP--VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
.....+..+.++..+.+++...+..|+ ...|..+...+...|+++.|...|++..+.. +.+...|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 334456778888888888865443222 3568888889999999999999999998874 3467899999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...|++..+. . +.+..+|..+..++...|++++|...|+...+..+ +..........+.
T Consensus 114 ~~~A~~~~~~Al~l--~-------------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~ 176 (296)
T PRK11189 114 FDAAYEAFDSVLEL--D-------------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAE 176 (296)
T ss_pred HHHHHHHHHHHHHh--C-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 99999999999874 2 23456788888999999999999999999988643 3221222222345
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CC---CCCHHhHHHHHHHHHhcCC
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH---GV---RPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~ 240 (256)
..++.++|...+.+..... .|+...+ .......|+...+ ..+..+.+. .. +.....|..+...+.+.|+
T Consensus 177 ~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 177 SKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred ccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 6688999999997765432 3332222 2233345666554 355555431 11 1133578899999999999
Q ss_pred hhHHHHHHHHHHhcC
Q 047518 241 VNHAKELFVSMESMG 255 (256)
Q Consensus 241 ~~~a~~~~~~m~~~g 255 (256)
+++|...|++..+.+
T Consensus 252 ~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 252 LDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887654
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=3.6e-11 Score=94.87 Aligned_cols=239 Identities=18% Similarity=0.153 Sum_probs=175.6
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHh-----CCCCCCccc-HHHHHHHHHccCChHHHHHHHHHHhhC-----CC--CCCHh
Q 047518 6 SGEGDITTITPNEALCIFDYMLRM-----HPSPPPVSS-FNIMLGCLAKNKHYDTVLSLFKRLNST-----GL--FPDLY 72 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~ 72 (256)
.+..|...|+++.|+..+++..+. |...|.+.+ .+.+...|...+++.+|..+|+++... |- +.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 456788899999999999998775 211134333 345778899999999999999998542 21 11235
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA-ITYNTIIDGLCKQGFVDKAKELFLKMKDK-- 149 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 149 (256)
+++.|..+|.+.|++++|..+++.+.+.- ........+.+ ..++.+...+...+++++|..+++...+.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~--------~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIY--------EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHH--------HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 78888889999999999999998887631 11111112222 34567788899999999999999876432
Q ss_pred -CCCC----chHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 150 -NVKP----NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----G--VQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 150 -~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
-+.+ -..+++.+...|...|++++|.+++++++.. | ..-....++.+...|.+.+++++|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1122 2467899999999999999999999998743 1 11224567888899999999999999998754
Q ss_pred H----CC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 218 Q----HG--VRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 218 ~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
. .| .+-...+|..|...|.+.|++++|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 22 22234689999999999999999999987765
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=9.4e-11 Score=89.54 Aligned_cols=229 Identities=14% Similarity=0.106 Sum_probs=179.4
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|.-.|.-++-.|++-.|.+-|+..+...+. +...|--+...|.+..+.++.+..|+...+.+ +-++.+|..-.+.+.
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRF 405 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHH
Confidence 334456677789999999999999998776 33348888899999999999999999998875 346778888888888
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
-.+++++|..-|++.+.. . +.+...|-.+.-+..+.+.++++...|++.+.+ ++-.+..|+...
T Consensus 406 lL~q~e~A~aDF~Kai~L--~-------------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA 469 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISL--D-------------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFA 469 (606)
T ss_pred HHHHHHHHHHHHHHHhhc--C-------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHH
Confidence 889999999999998874 2 235556777778888899999999999999887 445778999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCC-----CcHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQ-----PNVVTF-NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
..+...+++++|.+.|+..++.... .+...+ +..+-.+.-.+++..|..++++..+.+ +.....|..|.+.-.
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFEL 548 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHH
Confidence 9999999999999999998875221 111111 111112223489999999999998763 334567899999999
Q ss_pred hcCChhHHHHHHHHH
Q 047518 237 LTGRVNHAKELFVSM 251 (256)
Q Consensus 237 ~~g~~~~a~~~~~~m 251 (256)
+.|+.++|+++|++-
T Consensus 549 Q~~~i~eAielFEks 563 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKS 563 (606)
T ss_pred HHhhHHHHHHHHHHH
Confidence 999999999999864
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.5e-10 Score=86.73 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=106.5
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
-|.-.++-+.|...|++.++.+|. ....|+.+..-|...++...|.+.++...+.. +.|-..|..+.++|.-.+...
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~--~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPK--YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcc--hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchH
Confidence 344455556666666666665553 45556666666666666666666666666553 335556666666666666666
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
-|+-+|++..+. -+-|...|.+|..+|.+.++.++|++.|......|-. +...+..+.+.|.+.
T Consensus 416 YaLyYfqkA~~~---------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l 479 (559)
T KOG1155|consen 416 YALYYFQKALEL---------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHHHHHhc---------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHH
Confidence 666666666552 1235556666666666666666666666666555432 445566666666666
Q ss_pred CCHHHHHHHHHHHHHc----C-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 169 NDWNEAKRLFIEMMDQ----G-VQP-NVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~----~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
++..+|.+.++..++. | ..| .......|...+.+.+++++|.......
T Consensus 480 ~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 6666666666555432 1 111 1122222444445555555555444333
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=6.7e-10 Score=77.08 Aligned_cols=190 Identities=13% Similarity=0.033 Sum_probs=91.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCC
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 119 (256)
..+.-.|.+.|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+-|++.++. .+.+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---------------~p~~ 102 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL---------------APNN 102 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---------------CCCc
Confidence 334445555555555555555555442 223345555555555555555555555555542 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
..+.|.....+|..|.+++|...|++....- ..-...+|..+.-+..+.|+.+.|...+++..+.. +-...+...+..
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~ 181 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELAR 181 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHH
Confidence 3444555555555555555555555544331 11122344444444455555555555555555442 112334444445
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
...+.|++-.|...++.....+. ++.......|+.-...|+.+.+-++
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 55555555555555555544432 4555444445554555555544443
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=4.6e-10 Score=84.57 Aligned_cols=202 Identities=15% Similarity=0.089 Sum_probs=142.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|...|++..+..|. +...|+.+...+...|+++.|...|+...+.. +-+..+|..+..++...|+
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 44566789999999999999997765 77889999999999999999999999998764 2246788889999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|.+.+++..+. .|+ +. ........+...+++++|...|.+..... .|+...+ .+.. .
T Consensus 148 ~~eA~~~~~~al~~--~P~-------------~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~ 207 (296)
T PRK11189 148 YELAQDDLLAFYQD--DPN-------------DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--F 207 (296)
T ss_pred HHHHHHHHHHHHHh--CCC-------------CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--H
Confidence 99999999999885 222 11 11112223456788999999997765432 2232222 2222 3
Q ss_pred ccCCHHHHHHHHHHHHHc---CC--C-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH-HHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQ---GV--Q-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY-NTLLD 233 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 233 (256)
..|+...+ ..++.+.+. .. . .....|..+...+...|++++|...|+...+.+ +|+..-+ ..++.
T Consensus 208 ~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~~e 279 (296)
T PRK11189 208 YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYALLE 279 (296)
T ss_pred HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 35665544 344444422 11 1 124578899999999999999999999999875 3344433 33443
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.1e-09 Score=83.80 Aligned_cols=244 Identities=14% Similarity=0.133 Sum_probs=172.1
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH-hhHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINCF 81 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 81 (256)
|+..|+.+.++|++++|++.|.+.+...|. .+.-|.....+|...|+|+.+.+.-....+. .|+- ..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 456789999999999999999999987654 2667899999999999999999988877765 4442 2444444445
Q ss_pred HhcCCcchHHH----------------------HHHHH--------Hh---cCCCCchhhHHhhhh--------------
Q 047518 82 CKMGRVSHGFV----------------------VLGRI--------LR---SCFTPDVVTFTSLIK-------------- 114 (256)
Q Consensus 82 ~~~~~~~~a~~----------------------~~~~~--------~~---~~~~~~~~~~~~ll~-------------- 114 (256)
-..|++++|+. ++... .+ ....|+.....+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 45555444422 11111 11 112344333333332
Q ss_pred --------------------------------------------------------------------------------
Q 047518 115 -------------------------------------------------------------------------------- 114 (256)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (256)
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence
Q ss_pred -hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 115 -VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 115 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
..+.+...|-.+..+|....+.++....|+...+.+.. +..+|..-.+.+.-.+++++|..=|++.+... +-+...|
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 11222333666666777777777777777777776554 66677777777777788888888888887763 2345666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+..+.-+.++++++...|++..+. .+..+.+|+.....+...+++++|.+.|+..++
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 66767777889999999999999876 677788999999999999999999999987764
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.34 E-value=5.7e-09 Score=88.00 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=172.1
Q ss_pred hhHHHHHHHHHHhCCCCCCc-ccH----HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 17 NEALCIFDYMLRMHPSPPPV-SSF----NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
+.|+.-++.+...-+..|.. ..| .-.+-++...++..++++.|+.+...|.+....+-..+.++|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 44555566655532221322 222 2455677888999999999999999987766678889999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CC--ch-HH
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-----------KP--NV-VT 157 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~--~~-~~ 157 (256)
.+|+++....-.+. ...++......|.-+|...+++++|..+++.+.+..+ .| |- ..
T Consensus 348 ~l~~~~~~~~~~~~---------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 348 PILSSLYYSDGKTF---------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred HHHHHHhhcccccc---------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 99999977521110 1123444457788899999999999999999987321 12 22 23
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|+..++..... -+-+..+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHh
Confidence 4556777889999999999999998874 568899999999999999999999999887765 24456778888889999
Q ss_pred cCChhHHHHHHHHHHh
Q 047518 238 TGRVNHAKELFVSMES 253 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~ 253 (256)
.|++++|.++.+.+.+
T Consensus 497 l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 497 LQEWHQMELLTDDVIS 512 (822)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 9999999998877654
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=6.1e-09 Score=72.43 Aligned_cols=202 Identities=14% Similarity=0.073 Sum_probs=170.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|-+|+..|++..|..-+++.+++.|. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|.....++..|+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 45788999999999999999998876 77889999999999999999999999998874 3356788999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...|++.... |. ...-..+|..+.-+..+.|+.+.|...|.+..+.... ...+.-.+.+...
T Consensus 119 ~~eA~q~F~~Al~~---P~----------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~ 184 (250)
T COG3063 119 PEEAMQQFERALAD---PA----------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHY 184 (250)
T ss_pred hHHHHHHHHHHHhC---CC----------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHH
Confidence 99999999999885 21 2345678999999999999999999999999887544 4456677888888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
..|++..|...++.....+. ++....-..|..-.+.|+-+.+.+.=..+.+. -|...-|
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred hcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 99999999999999988764 88888888899999999999888877777654 3444433
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.1e-09 Score=83.50 Aligned_cols=213 Identities=13% Similarity=0.063 Sum_probs=168.5
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|+-...+|+++.|...|++.+..... -+...-.+.-.+-..|+.++|++.|-++..- +..+..+...+...|-...
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndas--c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDAS--CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLE 572 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchH--HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhh
Confidence 455567789999999999999774332 2223333444667889999999999887543 2346677778888898889
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
+...|++++-+.... ++.|+.+.+.|...|-+.|+-..|.+.+-.--.- ++-+..+...|..-|
T Consensus 573 d~aqaie~~~q~~sl---------------ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 573 DPAQAIELLMQANSL---------------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred CHHHHHHHHHHhccc---------------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 999999998777653 4567888999999999999999999887654433 455778888888888
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL-CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
....-+++++..|++..- +.|+..-|..++..| .+.|++++|.+++++.... ++.+..+...|++.+...|-
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 888899999999998765 489999998887665 5789999999999998765 67789999999998877764
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.33 E-value=1.1e-09 Score=89.38 Aligned_cols=241 Identities=14% Similarity=0.131 Sum_probs=148.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
++-....|++++|.+++.++.+..|. +...|..|...|-+.|+.+++...+-..-... +-|...|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 34445569999999999999998875 77889999999999999988887765543332 3355677777766667777
Q ss_pred cchHHHHHHHHHhcCCCCc-------------------hhhHHhhhh---------------------------------
Q 047518 87 VSHGFVVLGRILRSCFTPD-------------------VVTFTSLIK--------------------------------- 114 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~-------------------~~~~~~ll~--------------------------------- 114 (256)
+..|.-.|.++++..-..- ..++..++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777766666665421110 001111111
Q ss_pred --------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------------------------
Q 047518 115 --------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD-------------------------------------- 148 (256)
Q Consensus 115 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------------------------- 148 (256)
.-..+...+++++..|.+...++.|......+..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 1112334455666666666666666666555543
Q ss_pred -----------------------CC--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 149 -----------------------KN--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 149 -----------------------~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
.. +.-+...|.-+..++...|.+.+|+.++..+......-+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 11 11123344555566667777777777777776654444556677777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
|..++|.+.|+..+... +-+...-..|...+.+.|+.++|.+.+..|
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 77777777777766542 223444555666666777777777766654
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=6.6e-09 Score=83.08 Aligned_cols=237 Identities=16% Similarity=0.104 Sum_probs=137.7
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHH-HHHHHHHhc----
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS-ILINCFCKM---- 84 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~---- 84 (256)
+...|++++|++.++.-...-. ............+.+.|+.++|..+|..+++.+ |+...|. .+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 3567999999999987655332 234556778889999999999999999999885 5555444 444444222
Q ss_pred -CCcchHHHHHHHHHhc----------------------------------CCCCchhhHHhhhh---------------
Q 047518 85 -GRVSHGFVVLGRILRS----------------------------------CFTPDVVTFTSLIK--------------- 114 (256)
Q Consensus 85 -~~~~~a~~~~~~~~~~----------------------------------~~~~~~~~~~~ll~--------------- 114 (256)
...+....+|+++... |+++--.....+..
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 2344455666665442 22111111111100
Q ss_pred -----------------hcCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHH
Q 047518 115 -----------------VCKPDAITY--NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175 (256)
Q Consensus 115 -----------------~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 175 (256)
.-+|+...| .-+...|...|++++|+.+++...+..+. .+..|..-.+.+-+.|++.+|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 001233223 33455666677777777777766665322 3556666666666777777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------hH--HHHHHHHHhcCChhHHHHH
Q 047518 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF------TY--NTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~a~~~ 247 (256)
..++...... .-|...-+..+..+.++|++++|.+++..+-+.+..|... .| .....+|.+.|++..|++-
T Consensus 249 ~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 249 EAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777766654 2355555556666667777777777776665544332221 11 3344566677777777666
Q ss_pred HHHHH
Q 047518 248 FVSME 252 (256)
Q Consensus 248 ~~~m~ 252 (256)
|..+.
T Consensus 328 ~~~v~ 332 (517)
T PF12569_consen 328 FHAVL 332 (517)
T ss_pred HHHHH
Confidence 55543
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=2.4e-10 Score=83.36 Aligned_cols=194 Identities=17% Similarity=0.119 Sum_probs=162.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCC
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 119 (256)
+.+..+|.+.|-+.+|.+.++.-.+. .|-+.||-.|-+.|.+..++..|+.++.+-++. .+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---------------fP~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---------------FPFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---------------CCch
Confidence 57889999999999999999998876 678889999999999999999999999888874 2344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
+....-+...+...++.++|.++|+...+... .++.....+...|...++++-|+.+++++...|+. +...|+.+.-+
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLC 367 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLC 367 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHH
Confidence 55556677888999999999999999988743 37777777888888999999999999999999965 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
|.-.++++-++.-|.+....--.|+ ..+|..+.......||+..|.+.|+-..
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 9999999999999998886533344 3467777777778888888888776544
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.3e-09 Score=83.06 Aligned_cols=242 Identities=9% Similarity=0.030 Sum_probs=155.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
+..+.++|+++.|+++++-+.+......+...-|..+--|.+ .+++..|.++-+...... .-+......-.......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 345788999999999998887655442333333322222222 234555555555443321 112222222222223345
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhh-------------------hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll-------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
++++|...|.+.+...-......|+.-+ .....+..+...+.+.|....++..|+.++.+.
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 6666666666655432111111111111 122345666677778888888888888888776
Q ss_pred HhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
... ++.|+...+.|...|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....-+++++..|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 654 4557778888888999999999998887665554 456788888888889999999999999988754 589999
Q ss_pred hHHHHHHHH-HhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGF-CLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 253 (256)
-|..++..| .+.|++.+|.++++..-.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999888755 678999999999987643
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=2.7e-08 Score=74.47 Aligned_cols=203 Identities=11% Similarity=0.124 Sum_probs=153.3
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
+.|+.+.+=..+.+..+..+. ++....-.........|+++.|..-..++.+.+ +-++.......++|.+.|++....
T Consensus 130 qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred hcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHH
Confidence 467777777777777664333 455556667777777888888888888877765 335667777888888888888888
Q ss_pred HHHHHHHhcCCCCchh-------hHHhhhh--------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 92 VVLGRILRSCFTPDVV-------TFTSLIK--------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~-------~~~~ll~--------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
.+...+.+.|...+.. ++..++. ..+.++..-..++.-+.++|+.++|.++..
T Consensus 208 ~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 208 AILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 8888887776655432 2333332 334566777778888899999999999888
Q ss_pred HHHhCCC------------------------------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 145 KMKDKNV------------------------------KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 145 ~~~~~~~------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+..+.+. +.++..+..+-..|.+.+.|.+|...++...+. .|+..+|+
T Consensus 288 ~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~ 365 (400)
T COG3071 288 DALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYA 365 (400)
T ss_pred HHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHH
Confidence 7665433 224456777888899999999999999988776 78999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+..++.+.|+..+|.++.++...
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999988764
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.21 E-value=2.5e-09 Score=87.36 Aligned_cols=214 Identities=16% Similarity=0.130 Sum_probs=134.5
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC------------------------CCCCHhhHHH
Q 047518 21 CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG------------------------LFPDLYTHSI 76 (256)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~~~ 76 (256)
.++..+...|.. |+.++|..+|..|+..|+.+.|- +|.-|.-.. -.|...||..
T Consensus 11 nfla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~ 88 (1088)
T KOG4318|consen 11 NFLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTN 88 (1088)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHH
Confidence 345566667777 88899999999999999998887 766664321 1356789999
Q ss_pred HHHHHHhcCCcchHHHHHHH-HH-------hcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHH--------
Q 047518 77 LINCFCKMGRVSHGFVVLGR-IL-------RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK-------- 140 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~-~~-------~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~-------- 140 (256)
|..+|...|++.. ++..++ +. ..|+.....-+...+..++.....-...+......|.|+.++
T Consensus 89 Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999999765 222222 22 123222111111111111110000011111111122222222
Q ss_pred ----------------------HHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 141 ----------------------ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 141 ----------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
++........-.|+..+|..++.+-...|+.+.|..++.+|.+.|++.+.+-|-.++-
T Consensus 168 sa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 168 SAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred ccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 2222221111147888888888888888999999999999999988888877777765
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
+ .++..-++.+++.|...|+.|+..|+.-.+..+..+|.
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 5 78888888888888888999998888877776666443
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1e-08 Score=80.08 Aligned_cols=234 Identities=15% Similarity=0.100 Sum_probs=181.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+++.|++.+|.-.|+......|. ++..|-.|.......++-..|+..+++..+.. +-+....-.|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 45568899999999999999998876 88999999999999999999999999998874 3356788888889999999
Q ss_pred cchHHHHHHHHHhcCC-------------------CCchhhHHhhhh---------hcCCCHHHHHHHHHHHHhcCCHHH
Q 047518 87 VSHGFVVLGRILRSCF-------------------TPDVVTFTSLIK---------VCKPDAITYNTIIDGLCKQGFVDK 138 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~-------------------~~~~~~~~~ll~---------~~~~~~~~~~~l~~~~~~~~~~~~ 138 (256)
-..|.+.++..+.... .++...+..+.. ....|+.+...|...|.-.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999999888754310 011111111111 224788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
|.+.|+......+. |...||.|-..++...+..+|+..|++.++. .|+ ++....|.-+|...|.+++|.+.|-..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999887543 7789999999999999999999999999986 454 4566677788999999999999987665
Q ss_pred H---C------CCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 218 Q---H------GVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 218 ~---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
. . +..++...|..|=.++.-.++.|.+.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 3 1 112234567666666666777664443
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.16 E-value=1.1e-07 Score=74.03 Aligned_cols=226 Identities=14% Similarity=0.111 Sum_probs=132.8
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHH---HHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNI---MLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKM 84 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 84 (256)
.+...|++++|...+++..+..|. +...+.. ........+....+.+.++.. .+..|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPR--DLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 345678888888888888776654 4444442 111122234445555555441 111233 33444566677888
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cch--HHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-PNV--VTYTSV 161 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l 161 (256)
|++++|...+++..+.. +.+...+..+..++...|++++|...++........ |+. ..|..+
T Consensus 128 G~~~~A~~~~~~al~~~---------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 128 GQYDRAEEAARRALELN---------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred CCHHHHHHHHHHHHhhC---------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 88888888888888752 234556777888888999999999999887765321 222 345567
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCC-CCcHHHH-H--HHHHHHHhcCChhHHHHH--HHHH-HHC-CCCCCHHhHHHHHH
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTF-N--VIMDELCKNGKMDEASSL--LDLM-IQH-GVRPDAFTYNTLLD 233 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~-~~~-~~~~~~~~~~~l~~ 233 (256)
...+...|++++|..++++...... .+..... + .++.-+...|....+.+. +... ... ..............
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 7788888999999999988864322 1112111 1 233334444543333333 2111 111 00111122234566
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
++...|+.++|..+++.+..
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHH
Confidence 77788899999998887764
No 63
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.13 E-value=6.9e-08 Score=82.74 Aligned_cols=217 Identities=13% Similarity=0.089 Sum_probs=170.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CCCC---CHhhHHHHHHHHHhcCCcchHHHHHH
Q 047518 20 LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFP---DLYTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
.+=|+++.+..|. +...|-..|....+.++.+.|.+++++.... ++.- -...|.++++.-..-|.-+...++|+
T Consensus 1444 aeDferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred HHHHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3445566565553 6778999999999999999999999998654 1111 23467777777777787788899999
Q ss_pred HHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHH
Q 047518 96 RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175 (256)
Q Consensus 96 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 175 (256)
++.+.. ..-..|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-+.|.
T Consensus 1522 RAcqyc----------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1522 RACQYC----------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHhc----------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHH
Confidence 998851 2234688899999999999999999999987622 36778999999999999999999
Q ss_pred HHHHHHHHcCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 176 RLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.++.+..+.-.+ -........+..-.+.|+.+.+..+|+..... .+-....|+..++.=.++|+.+.++.+|++..+.
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 999999875211 12344556666677999999999999999876 3446778999999999999999999999999876
Q ss_pred CC
Q 047518 255 GC 256 (256)
Q Consensus 255 g~ 256 (256)
++
T Consensus 1664 ~l 1665 (1710)
T KOG1070|consen 1664 KL 1665 (1710)
T ss_pred CC
Confidence 63
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=3.8e-08 Score=78.13 Aligned_cols=206 Identities=19% Similarity=0.214 Sum_probs=152.3
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhC-----CC-CCCHh-hHHHHHHHHHhcCCcchHHHHHHHHHhc---CCCCch
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNST-----GL-FPDLY-THSILINCFCKMGRVSHGFVVLGRILRS---CFTPDV 106 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 106 (256)
.+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|++++.. .+-++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~- 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED- 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-
Confidence 45666899999999999999999987654 21 23333 3445777899999999999999998863 11111
Q ss_pred hhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCch-HHHHHHHHHHhccCCHHHHHHHHH
Q 047518 107 VTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-----NV-KPNV-VTYTSVIRGFCYANDWNEAKRLFI 179 (256)
Q Consensus 107 ~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~ 179 (256)
.+.-..+++.|..+|.+.|++++|...++...+. |. .|.. ..++.+...|...+++++|..+++
T Consensus 279 ---------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 279 ---------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred ---------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 1123457888999999999999999998876431 21 1222 346777788899999999999998
Q ss_pred HHHHc---CCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCCCHHhHHHHHHHHHhcCChhHHH
Q 047518 180 EMMDQ---GVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQH-----G--VRPDAFTYNTLLDGFCLTGRVNHAK 245 (256)
Q Consensus 180 ~~~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~ 245 (256)
...+. -+.++ ..+++.+...|...|++++|.+++++.... | ..-....++.+...|.+.++..+|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 87642 12222 467899999999999999999999988742 1 1222456788889999999999999
Q ss_pred HHHHHHH
Q 047518 246 ELFVSME 252 (256)
Q Consensus 246 ~~~~~m~ 252 (256)
++|.+-+
T Consensus 430 ~l~~~~~ 436 (508)
T KOG1840|consen 430 QLFEEAK 436 (508)
T ss_pred HHHHHHH
Confidence 9987754
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.12 E-value=1.6e-07 Score=74.92 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=163.6
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
-..|++..|..++.+..+..|. +...|-.-+..-..+.++++|..+|.+.... .|+...|.--+....-.+..++|
T Consensus 595 w~agdv~~ar~il~~af~~~pn--seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN--SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 3458888888888888887665 6777888888888888888888888887765 46667776666666667788888
Q ss_pred HHHHHHHHhcCCCCchh---------------------hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 91 FVVLGRILRSCFTPDVV---------------------TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---------------------~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+++++.++. -|+-. +|..-++.|+...-.|-.|...=-+.|.+-.|..++++...+
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 8888777764 23222 222222256666777888888888888999999999998888
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----------------------------CCCcHHHHHHHHHHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-----------------------------VQPNVVTFNVIMDEL 200 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~ll~~~ 200 (256)
+++ +...|-..|+.=.+.|..+.|..++.+..+.- +.-|.+....+...+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 765 78888889998889999999988887766531 112333444444555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
-...++++|.+.|.+..+.+ +.+..+|..+...+.++|.-++-.+++++.
T Consensus 828 w~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55556677777777766653 334456666666777777666666666554
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.5e-08 Score=77.84 Aligned_cols=242 Identities=13% Similarity=0.090 Sum_probs=153.8
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.++.+...+++.+..++++.+....|. ....+-.-|.++...|+..+-..+-.++.+.- +....+|-.+..-|...|
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpf--h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPF--HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCC--CcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 345566778888888888888886664 55566667778888888777777777776652 334567877877777778
Q ss_pred CcchHHHHHHHHHhcC--CCCch-----------------hhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSC--FTPDV-----------------VTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~--~~~~~-----------------~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
..++|.++|.+..... +.|.- ..|...-+.++.....+--+..-|.+.++++.|.+.|.+.
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8888888887765431 11110 0111111111112122222334456666677777777666
Q ss_pred HhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCC----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQ----PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
...- +-|+...+-+--.....+.+.+|..+|+..+.. .+. .-..+++.|..+|.+.+.+++|+..+++.....
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 5542 224555555555555667778888877776621 001 123457777888888888888888888877653
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+-+..++.++.-.|...|+++.|.+.|.+..
T Consensus 486 -~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 486 -PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred -CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5577788888888888888888888877654
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.11 E-value=1.9e-08 Score=82.46 Aligned_cols=193 Identities=18% Similarity=0.251 Sum_probs=136.3
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh----------cCCCHHHHHHH
Q 047518 57 SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------CKPDAITYNTI 126 (256)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~~~~~~~l 126 (256)
.++..+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-+....+...++.++.+ -.|.+.+|+.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 45677888999999999999999999999999988 88888887777777888888764 25678899999
Q ss_pred HHHHHhcCCHHH---HHHHHHHHH----hCCC-----------------CCchHHHHHHHHHHhccCCHHHHHHHH----
Q 047518 127 IDGLCKQGFVDK---AKELFLKMK----DKNV-----------------KPNVVTYTSVIRGFCYANDWNEAKRLF---- 178 (256)
Q Consensus 127 ~~~~~~~~~~~~---a~~~~~~~~----~~~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~---- 178 (256)
..+|...|++.. +.+-+..+. ..|+ -||..+ .+.-....|-|+.+++++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999754 333222221 1222 122211 111112223333333332
Q ss_pred --------------------------HHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047518 179 --------------------------IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 179 --------------------------~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 232 (256)
.......-.|+..+|..++.+-..+|+.+.|..++.+|.+.|++.+..-|..|+
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 111111114788888889988889999999999999999999888888777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC
Q 047518 233 DGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
-+ .++..-+..+++.|.+.||
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv 267 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGV 267 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcC
Confidence 66 7777788888888888875
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.08 E-value=1.8e-07 Score=77.58 Aligned_cols=230 Identities=13% Similarity=0.198 Sum_probs=160.7
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 047518 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTHSILINCFCKMGRVSHGFVV 93 (256)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 93 (256)
++.|...|....+..|. |+..+--=.......+++..|+.+|...... ..+||+. ..+..++.+.++.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~--Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD--NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCc--chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 58899999998886653 5533332233334567899999999996544 3345543 2344677888999999999
Q ss_pred HHHHHhcCCCCchhhHHhhhh------------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 94 LGRILRSCFTPDVVTFTSLIK------------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ll~------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
|.++.+. .|+...-...+. ....++.+.+.|.+.|.-.|+++.+..+...+...
T Consensus 222 ~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 9988874 443221111111 23568888999999999999999999999888765
Q ss_pred CCC--CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh
Q 047518 150 NVK--PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227 (256)
Q Consensus 150 ~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 227 (256)
... .-...|-.+.++|...|++++|...|.+..+....-....+.-+...+.+.|+.+.+...|+.+.+. .+.+..+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHH
Confidence 311 1234577888999999999999999988887632222344566788899999999999999998876 3556677
Q ss_pred HHHHHHHHHhcC----ChhHHHHHHHHHH
Q 047518 228 YNTLLDGFCLTG----RVNHAKELFVSME 252 (256)
Q Consensus 228 ~~~l~~~~~~~g----~~~~a~~~~~~m~ 252 (256)
...|...|+..+ ..+.|..++.+..
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 777777777665 3455555555443
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=9.3e-08 Score=69.88 Aligned_cols=171 Identities=9% Similarity=-0.039 Sum_probs=102.6
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|+++.|...++++.+.. |+. +....++..+..++...|++++|...++.+.+..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~----------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY--PFS----------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc----------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 3455555556666666666666666665531 110 0011244555666666666666666666665543
Q ss_pred CCCch--HHHHHHHHHHhcc--------CCHHHHHHHHHHHHHcCCCCcHHH-----------------HHHHHHHHHhc
Q 047518 151 VKPNV--VTYTSVIRGFCYA--------NDWNEAKRLFIEMMDQGVQPNVVT-----------------FNVIMDELCKN 203 (256)
Q Consensus 151 ~~~~~--~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~~ll~~~~~~ 203 (256)
..... .++..+..++... |+.++|...++.+.+.... +... ...+...+.+.
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 21111 1233333333332 5566666666666654211 1111 12455678899
Q ss_pred CChhHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 204 GKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
|++++|...++...+.. .+.....+..+..++.+.|++++|..+++.+..+
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999998752 1224568889999999999999999999888764
No 70
>PF12854 PPR_1: PPR repeat
Probab=99.07 E-value=2.8e-10 Score=55.43 Aligned_cols=32 Identities=59% Similarity=1.060 Sum_probs=22.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777776666
No 71
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=5.5e-07 Score=68.22 Aligned_cols=221 Identities=13% Similarity=0.101 Sum_probs=162.0
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC-ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc--
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV-- 87 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 87 (256)
...++.++|+.+++++++..|. +..+|+.-...+...| .+++++..++.+.+... .+..+|+.....+.+.+..
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 4567888999999999987775 6677887777777777 57999999999988753 3556777666666666653
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (256)
+++..+++++++. -+.+..+|+...-++.+.|++++++..++++.+.++. +..+|+.....+.+
T Consensus 125 ~~el~~~~kal~~---------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 125 NKELEFTRKILSL---------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 5667777777764 2456778888888999999999999999999998765 66677766655544
Q ss_pred c---CC----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 168 A---ND----WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN----GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 168 ~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
. |. .++......+++... +-|...|+.+...+... +...+|.+++.+....+ +.+......|+..|+
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 4 22 246777777777664 34677888888888773 34566888888877653 446778888888887
Q ss_pred hcC------------------ChhHHHHHHHHHH
Q 047518 237 LTG------------------RVNHAKELFVSME 252 (256)
Q Consensus 237 ~~g------------------~~~~a~~~~~~m~ 252 (256)
... ..++|.+++..+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 267 EGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 632 2367888887774
No 72
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.06 E-value=3.7e-08 Score=81.47 Aligned_cols=223 Identities=14% Similarity=0.134 Sum_probs=155.1
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.++++.|.++|..+.+..|. =+..|-.++......+...+|...+....... ..++..+..+...+.....+..|.+
T Consensus 509 l~~~~~A~e~Yk~Ilkehp~--YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEHPG--YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred hhhhhHHHHHHHHHHHHCch--hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccccc
Confidence 34666777777777775543 33345555544445566677777777765543 3355566666667777777777777
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK------------QGFVDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
-|....+.-.. .+|+.+.-+|.+.|.. .+..++|+++|.+..+..++ |...-|.
T Consensus 586 ~f~~i~~~~~~-------------~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 586 KFETILKKTST-------------KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHHHHhhhcc-------------CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 66655553111 1333344444444332 34578899999988887654 7777788
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcC
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 239 (256)
+...++..|++..|..+|.+..+... -+..+|..+..+|...|++..|.++|+...+ ..-..+..+...|..++.+.|
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 88888999999999999999988743 3556788999999999999999999987764 333457778899999999999
Q ss_pred ChhHHHHHHHHHHh
Q 047518 240 RVNHAKELFVSMES 253 (256)
Q Consensus 240 ~~~~a~~~~~~m~~ 253 (256)
.+.+|.+.+...+.
T Consensus 731 ~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 731 KLQEAKEALLKARH 744 (1018)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999887766543
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2e-07 Score=70.46 Aligned_cols=126 Identities=17% Similarity=0.093 Sum_probs=86.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----------C---------
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----------G--------- 185 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~--------- 185 (256)
-...+...+++++|.-.|+......+ -+...|..++.+|...|.+.+|...-+...+. |
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch
Confidence 34556666667777666666655421 25566666776666666666665554443221 0
Q ss_pred --------------CCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 186 --------------VQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 186 --------------~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
+.|+ ....+.+...|...|....+..+++..... .||....+.|.+.+...+.+.+|++.|..
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1233 234566777888999999999999988874 78999999999999999999999998877
Q ss_pred HHhc
Q 047518 251 MESM 254 (256)
Q Consensus 251 m~~~ 254 (256)
....
T Consensus 497 ALr~ 500 (564)
T KOG1174|consen 497 ALRQ 500 (564)
T ss_pred HHhc
Confidence 6543
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=6.7e-08 Score=72.21 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.......+.+|.+.++++.|.+.++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~ln 205 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLN 205 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHH
Confidence 45566677889999999999999999998763 33444555555432 34689999999998765 567888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV-NHAKELFVSMES 253 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 253 (256)
.+..++...|++++|.+++.+....+ +-++.+...++.+....|+. +.+.+++.+++.
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999999999987654 44667777888888888888 567778777664
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=1.7e-08 Score=73.77 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=114.1
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHhhCCCC-CC-HhhHHHHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPP-VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PD-LYTHSILINCF 81 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~ 81 (256)
..|..+...|++++|...|+++....|..+. ..++..+..++...|+++.|...++.+.+.... |. ..++..+..++
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 3456677899999999999999887765232 246778889999999999999999999876321 11 12455555666
Q ss_pred Hhc--------CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 82 CKM--------GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 82 ~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
... |++++|.+.++.+.+. .|+ +...+..+... ..+...
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~-------------~~~~~~a~~~~--------------~~~~~~---- 164 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRR--YPN-------------SEYAPDAKKRM--------------DYLRNR---- 164 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHH--CCC-------------ChhHHHHHHHH--------------HHHHHH----
Confidence 554 6778888888888764 222 11111111100 000000
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.......+...+.+.|++.+|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 165 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 000112344556777788888877777776521 123456777777777888888888777776654
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.00 E-value=3.3e-07 Score=75.45 Aligned_cols=245 Identities=13% Similarity=0.105 Sum_probs=184.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHH----HHHHHHccCChHHHHHHHHHHhhC-CCCCCHhhHHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNI----MLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCF 81 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 81 (256)
...|-+.|+...|.+.|.++.+..|+ .|..-+.. .+..+...++-+.|++.++..... +-..+...+++++..+
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 34566789999999999999998884 66554443 455667777779999998887663 2234566788888888
Q ss_pred HhcCCcchHHHHHHHHHhcCC---------------------------CCchhhHHhhhh--------------------
Q 047518 82 CKMGRVSHGFVVLGRILRSCF---------------------------TPDVVTFTSLIK-------------------- 114 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~ll~-------------------- 114 (256)
.....++.+............ .++..++..++.
T Consensus 327 l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~ 406 (895)
T KOG2076|consen 327 LKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED 406 (895)
T ss_pred HHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh
Confidence 888889888888777766222 222222111111
Q ss_pred --hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHH
Q 047518 115 --VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192 (256)
Q Consensus 115 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 192 (256)
.+..++..|.-+..+|...|.+.+|+.+|..+.....--+...|-.+..+|...|..+.|.+.++..+... +.+...
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~ 485 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDA 485 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhh
Confidence 13345678888999999999999999999999887555567889999999999999999999999999863 334556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH--------HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMI--------QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
-..|...+-+.|+.++|.+++..+. ..+..|...........+.+.|+.++-+.....|..
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6677788899999999999999854 233566666667777888899999987777666654
No 77
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=2.1e-08 Score=80.54 Aligned_cols=196 Identities=11% Similarity=0.049 Sum_probs=107.1
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..+.+.|-...|..+|+++. .|...+.+|...|+..+|..+..+..+. +||...|..+.+.....--+
T Consensus 406 ell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHH
Confidence 44566777888888888763 3777888888889888888888887774 67888888888887777777
Q ss_pred chHHHHHHHHHhc-----CCCC----c----hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 047518 88 SHGFVVLGRILRS-----CFTP----D----VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 88 ~~a~~~~~~~~~~-----~~~~----~----~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
++|.++.+....+ |..+ + ...+..-+...+....+|-.+..+..+.++++.|.+.|.......+ -+
T Consensus 474 EkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P-d~ 552 (777)
T KOG1128|consen 474 EKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP-DN 552 (777)
T ss_pred HHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC-Cc
Confidence 7888777664432 0000 0 0001111111222333444444444444444444444444443321 13
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
...||.+-.+|.+.++..+|...+++..+.+ .-+-..|...+....+.|.+++|.+.+.++.
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 3344444444444444444544444444443 2233344444444444444444444444443
No 78
>PF12854 PPR_1: PPR repeat
Probab=98.96 E-value=1.2e-09 Score=53.21 Aligned_cols=32 Identities=50% Similarity=0.948 Sum_probs=17.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=1.7e-06 Score=69.55 Aligned_cols=207 Identities=13% Similarity=0.166 Sum_probs=137.1
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh--------
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------- 114 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-------- 114 (256)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++++ |+...|-..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567899999999999875544 33345567778889999999999999999999873 44333322221
Q ss_pred --------------------------------------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 115 --------------------------------------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 115 --------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
..+.-+.+|+.|-..|......+-...++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 001122344444444443333334444444
Q ss_pred HHHhC----C----------CCCch--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChh
Q 047518 145 KMKDK----N----------VKPNV--VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 145 ~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~ 207 (256)
..... + -+|+. .++..+.+.|...|++++|+.++++.++. +|+ ...|..-...+-+.|++.
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHH
Confidence 43321 1 12333 34466677788888888888888888877 344 667777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
+|.+.++..+..+ .-|-..-+-.+..+.++|+.++|.+++....+.+
T Consensus 246 ~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 246 EAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 8888888888764 2355566667777788888888888877765544
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=4.2e-07 Score=64.25 Aligned_cols=156 Identities=11% Similarity=0.140 Sum_probs=113.0
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (256)
+..|...|+++.+....+.+. ... ..+...++.+++...+++.++. -+.+...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~-----~~~-------~~~~~~~~~~~~i~~l~~~L~~---------------~P~~~~~ 75 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA-----DPL-------HQFASQQTPEAQLQALQDKIRA---------------NPQNSEQ 75 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh-----Ccc-------ccccCchhHHHHHHHHHHHHHH---------------CCCCHHH
Confidence 346677787777543331110 011 1222345555666666665553 3567889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HhccCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG-FCYAND--WNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
|..+...|...|++++|...|++....... +...+..+..+ +...|+ .++|.+++++..+.+. -+...+..+...
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~ 153 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASD 153 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHH
Confidence 999999999999999999999999887654 77777777776 467677 5999999999998853 367888999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
+...|++++|...|+.+.+.. +|+..-+
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 999999999999999998863 5555443
No 81
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.96 E-value=2e-06 Score=68.95 Aligned_cols=237 Identities=11% Similarity=0.020 Sum_probs=123.3
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
.+.+.+.++-|..+|...++..|. +...|......=-..|..+....++++....- +-....|-.....+...|+..
T Consensus 525 ~~~k~~~~~carAVya~alqvfp~--k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQVFPC--KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcH
Confidence 345666677777777777765554 55566666666666677777777777776652 223334444555566667777
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhh-------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIK-------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~-------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.|..++.++.+..-. +...+-..++ ...++..+|..-+..-.-.++.++|.+++++..+.
T Consensus 602 ~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 602 AARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 777777666654110 1111000000 11233333333333333344444444444444332
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
.+.-...|..+-+.+.+.++.+.|...|..-.+. ++-....|..+...=.+.|.+-.|..+|+..+-.+ +-+...|.
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 1112223333334444444444444444333322 22234455555555556666667777776666543 44666777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 047518 230 TLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
..|+.=.+.|..+.|..++.+..
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777777776655443
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=1.6e-07 Score=66.41 Aligned_cols=120 Identities=11% Similarity=0.135 Sum_probs=79.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHH
Q 047518 49 NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~ 128 (256)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---------------P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---------------GENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHH
Confidence 455566666666665553 4466677777777777777777777777777642 234555666666
Q ss_pred H-HHhcCC--HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 129 G-LCKQGF--VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 129 ~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
+ +...|+ .++|..++++..+.+.. +..++..+...+...|++++|...|+++.+..
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5 355565 47777777777776544 55666667777777777777777777777653
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=6e-06 Score=67.29 Aligned_cols=232 Identities=15% Similarity=0.114 Sum_probs=172.0
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHH
Q 047518 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
-.++++.+++..+.++..|+ +...+.--|+..++.+.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~--~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPL--VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34577888888887776443 3444555667788899999999998888666788888888888888889888888877
Q ss_pred HHHhc-CCC------------------CchhhHHhhhh------------------------------------------
Q 047518 96 RILRS-CFT------------------PDVVTFTSLIK------------------------------------------ 114 (256)
Q Consensus 96 ~~~~~-~~~------------------~~~~~~~~ll~------------------------------------------ 114 (256)
..... |.. ....|...++.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 76543 110 00111111110
Q ss_pred ---------------------hcCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 047518 115 ---------------------VCKPD------AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167 (256)
Q Consensus 115 ---------------------~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (256)
...|+ ...|......+.+.+..++|...+.+..... +.....|...-..+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 01112 2355566778888999999998888887764 3366677777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH--HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047518 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS--LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 245 (256)
.|.+.+|.+.|......+ +-+.....++..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|.
T Consensus 697 ~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHH
Confidence 999999999999988764 2246688899999999999888888 999999875 568899999999999999999999
Q ss_pred HHHHHHH
Q 047518 246 ELFVSME 252 (256)
Q Consensus 246 ~~~~~m~ 252 (256)
+.|....
T Consensus 775 ecf~aa~ 781 (799)
T KOG4162|consen 775 ECFQAAL 781 (799)
T ss_pred HHHHHHH
Confidence 9987654
No 84
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1.7e-06 Score=66.76 Aligned_cols=234 Identities=13% Similarity=0.139 Sum_probs=150.4
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.|++.-|.++|+.... .. |+...|++.|..=.+-+.++.|..++++..-. .|+..+|.-....-.+.|....+..
T Consensus 154 LgNi~gaRqiferW~~--w~-P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WE-PDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 5788899999999876 33 78899999999999999999999999998765 4788888777777777777777777
Q ss_pred HHHHHHhc-CCC-CchhhHHhhhh--------------------------------------------------------
Q 047518 93 VLGRILRS-CFT-PDVVTFTSLIK-------------------------------------------------------- 114 (256)
Q Consensus 93 ~~~~~~~~-~~~-~~~~~~~~ll~-------------------------------------------------------- 114 (256)
+|..+.+. |-. .+...+.++..
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 77766542 100 00011111110
Q ss_pred ------------------------------------------hcC-----------------------------------
Q 047518 115 ------------------------------------------VCK----------------------------------- 117 (256)
Q Consensus 115 ------------------------------------------~~~----------------------------------- 117 (256)
.++
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 000
Q ss_pred ---------CCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 118 ---------PDAITY----NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 118 ---------~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
....+| -.....-.++.++..|.+++.... |.-|-..+|...|..=.+.++++.+..+++..++.
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 011111 111112223344444444444332 44567777777777777888888888888888877
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+ +-|..+|......=...|+.+.|..+|.-..++. +......|.+.|+.=...|.+++|..+++++.+.
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 5 3466777777777777788888888888777642 1222335555666556777888888887777653
No 85
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.9e-07 Score=72.09 Aligned_cols=217 Identities=13% Similarity=0.073 Sum_probs=150.5
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 91 (256)
.|+..+-..+=.++.+..|. .+.+|-.+.--|.-.|+..+|.+.|.+..... |. ...|-.....|+-.+..++|+
T Consensus 291 l~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAm 366 (611)
T KOG1173|consen 291 LGKSNKLFLLSHKLVDLYPS--KALSWFAVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAM 366 (611)
T ss_pred hcccchHHHHHHHHHHhCCC--CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHH
Confidence 34444444444556565554 56677777777777777777777777654432 22 246666677777777777777
Q ss_pred HHHHHHHhc--C-CCCchhhH----------------HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 047518 92 VVLGRILRS--C-FTPDVVTF----------------TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--- 149 (256)
Q Consensus 92 ~~~~~~~~~--~-~~~~~~~~----------------~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 149 (256)
..|..+.+. | ..|...+- ...+...+.|+...+-+.......+.+.+|..+|......
T Consensus 367 aaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 367 AAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 766665542 1 12221111 1111145678888888888888899999999999987621
Q ss_pred -CC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 150 -NV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 150 -~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
+. ..-..+++.|-.+|.+.+.+++|+..++...... +-+..++..+.-.|...|+++.|.+.|.+... +.|+-.
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~ 523 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNI 523 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccH
Confidence 11 1134568888999999999999999999999874 56889999999999999999999999999886 467776
Q ss_pred hHHHHHHHHH
Q 047518 227 TYNTLLDGFC 236 (256)
Q Consensus 227 ~~~~l~~~~~ 236 (256)
+...++..+.
T Consensus 524 ~~~~lL~~ai 533 (611)
T KOG1173|consen 524 FISELLKLAI 533 (611)
T ss_pred HHHHHHHHHH
Confidence 6666665443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=1.7e-06 Score=67.40 Aligned_cols=196 Identities=13% Similarity=0.021 Sum_probs=129.9
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
+...|+++.+...+....+..+...+.. ........+...|++++|.+.+++..+.. +.+...+.. ...+...+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~ 93 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFS 93 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccc
Confidence 3445778888888887776655423321 22233445677899999999999988763 333334443 22333334333
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
.+.....+.... ..+ ..+........+...+...|++++|...+++..+.... +...+..+...+...
T Consensus 94 ~~~~~~~~~l~~-~~~----------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 94 GMRDHVARVLPL-WAP----------ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred cCchhHHHHHhc-cCc----------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 333333333332 111 12334445566777889999999999999999887543 566778888899999
Q ss_pred CCHHHHHHHHHHHHHcCC-CCcH--HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 169 NDWNEAKRLFIEMMDQGV-QPNV--VTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
|++++|...+++...... .|+. ..|..+...+...|++++|..++++....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999887532 1232 34557888899999999999999998654
No 87
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.91 E-value=1.6e-07 Score=66.71 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=133.9
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
|... ..+-..+...|+-+....+........ +.|.......+....+.|++..|+..+++....
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-------------- 129 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-------------- 129 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------------
Confidence 4444 667778888888888888877754332 345667777889999999999999999999874
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
-++|..+|+.+.-+|.+.|+.++|..-|.+..+.-.. +...++.+.-.+.-.|+.+.|..++......+ .-|...-.
T Consensus 130 -~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~ 206 (257)
T COG5010 130 -APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQ 206 (257)
T ss_pred -CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHH
Confidence 2578889999999999999999999999998876433 55667888888888999999999999998875 34777888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+.......|++++|.++...-..
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHhhcCChHHHHhhcccccc
Confidence 888889999999999999876553
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=3.4e-06 Score=60.18 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=131.3
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
|..+ ..+-..+...|+-+....+..+.... .+.|.......+....+.|++.+|...+++....
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---------------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA---------------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc---------------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3444 55666777778888777777665432 2345566777899999999999999999999887
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
. ++|..+|+.+--+|.+.|+.+.|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ .-+..+-.
T Consensus 130 ~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~ 206 (257)
T COG5010 130 A-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQ 206 (257)
T ss_pred C-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHH
Confidence 5 4699999999999999999999999999999873 3356788999999999999999999999998764 33677778
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 047518 230 TLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~ 249 (256)
.+.......|++++|.++..
T Consensus 207 NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHhhcCChHHHHhhcc
Confidence 88888899999999988653
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.89 E-value=1.2e-06 Score=74.14 Aligned_cols=215 Identities=8% Similarity=0.019 Sum_probs=134.9
Q ss_pred CCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCc----
Q 047518 31 PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD---- 105 (256)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 105 (256)
..+.+...|..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++...+..+ .+...-....
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 34467788999999999999999999999977766 344 34555555577888888777766 4433211111
Q ss_pred hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
+.-+...+.....+..++..+..+|-+.|+.++|..+|+++.+..+. |..+.|.+...|+.. ++++|.+++.+.+..-
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 11122222234455568888999999999999999999999998744 888999999999888 9999999988876541
Q ss_pred CCCcHHHHHHHHHHH-----HhcCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 186 VQPNVVTFNVIMDEL-----CKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 186 ~~~~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+ +..-|+.+...+ ....+.+.-.++.+.+... |..--+.++..+-..|...++|+++..+++.+.+
T Consensus 180 i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 180 I--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred H--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 1 111111111110 1122233333333333322 2222333444555566666666666666666554
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.89 E-value=2.6e-06 Score=71.06 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=104.3
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
..+...+..|.....+.|.+++|..+++.+.+. .+.+......+...+.+.+++++|...+++..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 345667777777777888888888888877764 13345567777778888888888888888887
Q ss_pred hCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh
Q 047518 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 227 (256)
...+. +......+..++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.- .|...-
T Consensus 148 ~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~ 224 (694)
T PRK15179 148 SGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARK 224 (694)
T ss_pred hcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHH
Confidence 76543 55666777777788888888888888887743 2346777777788888888888888888777642 344455
Q ss_pred HHHHH
Q 047518 228 YNTLL 232 (256)
Q Consensus 228 ~~~l~ 232 (256)
|+..+
T Consensus 225 ~~~~~ 229 (694)
T PRK15179 225 LTRRL 229 (694)
T ss_pred HHHHH
Confidence 55443
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.4e-06 Score=65.90 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=79.5
Q ss_pred ccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHH
Q 047518 4 KSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINCFC 82 (256)
Q Consensus 4 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 82 (256)
...|++.++.|+++.|+..|.+.+...| +|...|..-..+|...|++++|++=-.+-.+. .|+. ..|.....++.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALF 81 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHH
Confidence 4567888999999999999999988766 49999999999999999999998877777665 5664 58999999999
Q ss_pred hcCCcchHHHHHHHHHhc
Q 047518 83 KMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~ 100 (256)
-.|++++|+..|.+-++.
T Consensus 82 ~lg~~~eA~~ay~~GL~~ 99 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEK 99 (539)
T ss_pred hcccHHHHHHHHHHHhhc
Confidence 999999999998876653
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=6.4e-07 Score=59.97 Aligned_cols=109 Identities=14% Similarity=0.021 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 20 LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
..+|++..+..|. .+......+.+.|++++|...|+...... +.+...|..+..++...|++++|...|++...
T Consensus 13 ~~~~~~al~~~p~-----~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPE-----TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455555553322 24445666677777777777777776653 33556667777777777777777777777766
Q ss_pred cCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 100 ~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.. +.+...+..+..++...|++++|...|+.....
T Consensus 87 l~---------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 LD---------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cC---------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 31 235556666677777777777777777776665
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=2e-06 Score=57.57 Aligned_cols=106 Identities=10% Similarity=-0.063 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (256)
.+..+...+...|++++|...|+......+. +...|..+..++...|++++|...|+...... +.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 4556778889999999999999999887543 78889999999999999999999999999874 457888999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 047518 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNT 230 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (256)
..|++++|...|+...+.. +.+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~-p~~~~~~~~ 131 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS-YADASWSEI 131 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 9999999999999998853 223444433
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.77 E-value=1.2e-06 Score=58.06 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
+.+......+...+...|++++|...|+.+...+. .+...+..+...+...|++++|...++...+.+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 33455667778889999999999999999988654 377888888999999999999999999988775 4467788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
..++...|++++|...|+...+. .|+...+..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 88999999999999999998875 4555444433
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=1e-05 Score=70.12 Aligned_cols=218 Identities=14% Similarity=0.106 Sum_probs=168.8
Q ss_pred CCCcCChhhHHHHHHHHHHhC-CCC--CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 10 DITTITPNEALCIFDYMLRMH-PSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
.++.++.+.|++++++.+..- +.. --...|.++++.-..-|.-+...++|+++.+. -.....|..|...|.+.+.
T Consensus 1468 ~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek 1545 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEK 1545 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhc
Confidence 466788999999999987642 221 11245888888777778888999999999876 2334678899999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGF 165 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 165 (256)
+++|.++++.|.+. +.....+|...+..+.+.++-++|..++.+..+.=++- ........++.-
T Consensus 1546 ~~~A~ell~~m~KK---------------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKK---------------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred chhHHHHHHHHHHH---------------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 99999999999985 34567789999999999999999999999987752221 233445555555
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCChhH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF--TYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 243 (256)
.+.|+.+.+..+|+...... +-....|+.+++.=.+.|+.+.+..+|++....++.|... .|...+..=-..|+-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 78899999999999999774 3356789999999999999999999999999988877543 45555555455566554
Q ss_pred HH
Q 047518 244 AK 245 (256)
Q Consensus 244 a~ 245 (256)
+.
T Consensus 1690 vE 1691 (1710)
T KOG1070|consen 1690 VE 1691 (1710)
T ss_pred HH
Confidence 43
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=2.1e-07 Score=69.54 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=113.3
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (256)
...+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.. .|.... ..
T Consensus 109 A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~-----------qL 169 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILT-----------QL 169 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHH-----------HH
T ss_pred HHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHH-----------HH
Confidence 34566678899888887542 356777788899999999999999999998742 221111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
..+.+..+.-.+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+ +-+..+...++.+...
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHH
Confidence 223333344445799999999998776 45688889999999999999999999999988765 3366778888888888
Q ss_pred cCCh-hHHHHHHHHHHHC
Q 047518 203 NGKM-DEASSLLDLMIQH 219 (256)
Q Consensus 203 ~g~~-~~a~~~~~~~~~~ 219 (256)
.|+. +.+.+.+.++...
T Consensus 248 ~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp TT-TCHHHHHHHHHCHHH
T ss_pred hCCChhHHHHHHHHHHHh
Confidence 8888 6678888888764
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=8.5e-06 Score=68.08 Aligned_cols=143 Identities=10% Similarity=0.080 Sum_probs=95.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
++..+-.|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++.....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------------ 150 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------------ 150 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------------
Confidence 5666777777777777777777777777765 343 4466666777777777777777777777641
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
+.+......+..++...|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.. .|....|
T Consensus 151 ---p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~ 225 (694)
T PRK15179 151 ---SSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKL 225 (694)
T ss_pred ---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHH
Confidence 33556666677777777777777777777776432 246667777777777777777777777777652 3344444
Q ss_pred HHH
Q 047518 194 NVI 196 (256)
Q Consensus 194 ~~l 196 (256)
+..
T Consensus 226 ~~~ 228 (694)
T PRK15179 226 TRR 228 (694)
T ss_pred HHH
Confidence 443
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3.2e-06 Score=66.61 Aligned_cols=191 Identities=13% Similarity=0.074 Sum_probs=143.8
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (256)
..-+.+.|++..|.-.|+...+.. +-+...|..|.......++-..|+..+++.++. +|+ +..+
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~-------------Nlea 355 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPT-------------NLEA 355 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCc-------------cHHH
Confidence 344567889999999999988774 346789999999999999989999999998874 333 3344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH------------------------------------------hCCCCCchHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMK------------------------------------------DKNVKPNVVTYTS 160 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~------------------------------------------~~~~~~~~~~~~~ 160 (256)
.-.|...|...|.-..|++.++.-. ..+..+|..+...
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG 435 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence 4455555555555555555554432 2222356666777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTG 239 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 239 (256)
|--.|.-.|++++|.+.|+.++... +-|..+||.|...++...+.++|+..|.+.++. .|+ +++...|.-+|...|
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhh
Confidence 7777888899999999999999874 346789999999999999999999999999875 565 456777888899999
Q ss_pred ChhHHHHHHHHHH
Q 047518 240 RVNHAKELFVSME 252 (256)
Q Consensus 240 ~~~~a~~~~~~m~ 252 (256)
.+++|.+.|=..+
T Consensus 513 ~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 513 AYKEAVKHLLEAL 525 (579)
T ss_pred hHHHHHHHHHHHH
Confidence 9999998775544
No 99
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.8e-05 Score=61.38 Aligned_cols=234 Identities=12% Similarity=0.120 Sum_probs=140.1
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCcchH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 90 (256)
+.++++.|.++|+..+.... .+...|-..+.+=.+++....|..+|++.... -|-+ ..|.-.+..--..|+...|
T Consensus 85 sq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHH
Confidence 45778899999999987554 47888888888888999999999999988765 3332 3444444455567888889
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhh-------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIK-------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-N 150 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~-------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 150 (256)
.++|++..+- .|+...|.+.+. .+.|++..|-.....=.++|+...|..+|....+. |
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 9999888763 555555555443 34455555555555555566666666666554432 1
Q ss_pred C-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHH--------HHHHHC
Q 047518 151 V-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLL--------DLMIQH 219 (256)
Q Consensus 151 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~--------~~~~~~ 219 (256)
- ..+...+.++..-=.++..++.|..+++-.++. ++.+ ...|..+...=-+-|+.....+.. +.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 011222333333333445555555555555544 1112 233443333333444433333222 222222
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+ +.|..+|.-.+..-...|+.+...+++++.+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 2 45666777777777778888888888887764
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=1.6e-06 Score=67.26 Aligned_cols=126 Identities=19% Similarity=0.214 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
.....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++.+..+.. +-+...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345567778888999999999999999874 44 44557888888899999999999999763 44677778888889
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
...++++.|..+.+++.... +-+..+|..|..+|.+.|++++|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999862 4456699999999999999999999887653
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2e-06 Score=62.69 Aligned_cols=236 Identities=15% Similarity=0.176 Sum_probs=158.1
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHH-HHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI-LINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~ 87 (256)
..++..++++|++++..-.+..+. +......+..+|.+..++..|-..++++-.. -|...-|.. -.+.+.+.+.+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhccc
Confidence 346778899999998887776553 7777889999999999999999999999775 455544432 24566677888
Q ss_pred chHHHHHHHHHhc-CC--------------CCchhhHHhhhhhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 88 SHGFVVLGRILRS-CF--------------TPDVVTFTSLIKVCK--PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 88 ~~a~~~~~~~~~~-~~--------------~~~~~~~~~ll~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..|+.+...|... .+ ..|..-..+++...+ .+..+.+...-...+.|++++|.+-|+...+-+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 8888888777652 00 111111122222222 344555555566778999999999999887764
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-------------CcH---------------HHHHHHHHHHHh
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-------------PNV---------------VTFNVIMDELCK 202 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~---------------~~~~~ll~~~~~ 202 (256)
---+...|+..+..| +.++.+.|++...++++.|++ ||. ..+|.-...+.+
T Consensus 175 GyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred CCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 444667788777655 678999999999999887653 221 112222233456
Q ss_pred cCChhHHHHHHHHHHHC---------------------------------CC-CCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 203 NGKMDEASSLLDLMIQH---------------------------------GV-RPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~---------------------------------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
.|+++.|.+.+-+|.-+ ++ +....||..++-.|+++.-++.|-+++
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 77888777777665421 11 123467888888888888888777765
Q ss_pred H
Q 047518 249 V 249 (256)
Q Consensus 249 ~ 249 (256)
-
T Consensus 334 A 334 (459)
T KOG4340|consen 334 A 334 (459)
T ss_pred h
Confidence 4
No 102
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=2.8e-05 Score=59.11 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=140.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-CcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG-RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
+..+-..+...+..++|+.+.+++++.. +-+..+|+....++...+ .+++++..++++.+.. +
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---------------p 103 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---------------P 103 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---------------C
Confidence 4445556667788999999999998863 224457777766777777 5789999999888752 3
Q ss_pred CCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFV--DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
.+..+|+.....+.+.|.. ++++.+++.+.+...+ +..+|+...-++...|+++++++.++++++.+.. |...|+.
T Consensus 104 knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~ 181 (320)
T PLN02789 104 KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQ 181 (320)
T ss_pred cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHH
Confidence 4455677665556666653 7789999899887765 8889998888999999999999999999988644 6677777
Q ss_pred HHHHHHhc---CCh----hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----CChhHHHHHHHHHHh
Q 047518 196 IMDELCKN---GKM----DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT----GRVNHAKELFVSMES 253 (256)
Q Consensus 196 ll~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 253 (256)
....+.+. |.. ++......++.... +-+...|+.+...+... +...+|.+.+.+..+
T Consensus 182 R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 182 RYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 66666554 323 45666666666653 45677788777777663 344567777766554
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.9e-06 Score=65.84 Aligned_cols=224 Identities=15% Similarity=0.113 Sum_probs=137.5
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|.+..+.+.+.|++++|.+...+++..+|. +...+..=+-++.+.+++++|+.+.+.-... ..+...+-.-.-+..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 344566778899999999999999987765 5566777777889999999999766543321 111111122334556
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
+.+..++|+..++ |..+ .+..+...-...+.+.|++++|.++|+.+.+.+.. + +...+
T Consensus 91 rlnk~Dealk~~~-----~~~~-------------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~ 148 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDR-------------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEER 148 (652)
T ss_pred HcccHHHHHHHHh-----cccc-------------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHH
Confidence 8899999998887 2222 22334445567889999999999999999877543 2 22222
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCH------H-
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQH-------GVRPDA------F- 226 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~------~- 226 (256)
.+-+.. ...+... +.+......| +...+-.....+...|++.+|+++++...+. +-.-+. .
T Consensus 149 r~nl~a--~~a~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 149 RANLLA--VAAALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHH--HHHhhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 211100 0011111 1122222233 2233333445677899999999999988321 111111 1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
.-..+.-.+...|+-++|..++...++..
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 12234445678899999999998887654
No 104
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.69 E-value=2.6e-05 Score=62.58 Aligned_cols=226 Identities=15% Similarity=0.112 Sum_probs=132.7
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|.-.|-.+..-|+-++|.+....-.+..+ .+.+.|+.+.-.+...+++++|++.|......+ +.|...|.-+.-.-+
T Consensus 44 lAmkGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 44 LAMKGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQI 120 (700)
T ss_pred HHhccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 33444455555666666666655555333 355666666666666666666666666665553 334455555554445
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSV 161 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 161 (256)
+.++++.....-.++.+ ..+.....|..+..++.-.|++..|..+.+...+.. -.|+...|...
T Consensus 121 QmRd~~~~~~tr~~LLq---------------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQ---------------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred HHHhhhhHHHHHHHHHH---------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 55555555544444444 234455678888889999999999999999887664 24555555333
Q ss_pred H------HHHhccCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH-HHHH
Q 047518 162 I------RGFCYANDWNEAKRLFIEMMDQGVQPNVV-TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN-TLLD 233 (256)
Q Consensus 162 i------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 233 (256)
. ......|..+.|.+.+..-... ..|.. .-..-...+.+.+++++|..++..+... .||-.-|. .+..
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH
Confidence 3 2234567777777766655443 12222 2234455677888899999999888876 35544444 4444
Q ss_pred HHHhcCChhHHH-HHHHH
Q 047518 234 GFCLTGRVNHAK-ELFVS 250 (256)
Q Consensus 234 ~~~~~g~~~~a~-~~~~~ 250 (256)
++.+-.+.-++. .+|..
T Consensus 262 ~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHhhhHHHHHHHHHH
Confidence 443333333333 34443
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=1.8e-06 Score=57.26 Aligned_cols=110 Identities=11% Similarity=0.036 Sum_probs=89.5
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.++........ +......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34455544322 34556667788889999999999999998865 4477889999999999999999999999988764
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 222 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+.+...+..+..+|...|++++|.+.+++..+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556788888899999999999999999987764
No 106
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.65 E-value=6e-06 Score=66.02 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=47.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
.++..+-+.|+++.|...++..+.+ +|+ ...|..=.+.+...|+++.|..++++..+.+ .+|...-.--..-..++
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 3445555556666666666655554 333 2233344455555666666666666555542 33333333344444455
Q ss_pred CChhHHHHHHHHHHhcC
Q 047518 239 GRVNHAKELFVSMESMG 255 (256)
Q Consensus 239 g~~~~a~~~~~~m~~~g 255 (256)
++.++|.++.....+.|
T Consensus 453 n~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREG 469 (700)
T ss_pred cccHHHHHHHHHhhhcc
Confidence 55555555555554443
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=6.8e-06 Score=55.22 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV--VTFNVIM 197 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll 197 (256)
.|..++..+ ..++...+...++.+......- .....-.+...+...|++++|...|+.+......|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 455555555 4889999999999998864321 1233344557788999999999999999987533332 3455578
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
..+...|++++|...++..... ......+......|.+.|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8889999999999999775433 334556778888999999999999999864
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=5.1e-05 Score=54.15 Aligned_cols=189 Identities=12% Similarity=0.077 Sum_probs=96.3
Q ss_pred cCChhhHHHHHHHHHHhCCC---CCCc-ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 13 TITPNEALCIFDYMLRMHPS---PPPV-SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
..++++..+++.++....+. .++. ..|..++-+....|+.+.|...++.+...= +-+..+-..-...+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 44566666666665442221 1122 123444445555666666666666665542 111122111122233456666
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
+|+++|+.+++.. +.|.+++-.-+.+.-..|..-+|++-+....+. +..|...|.-+...|...
T Consensus 104 ~A~e~y~~lL~dd---------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 104 EAIEYYESLLEDD---------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE 167 (289)
T ss_pred hHHHHHHHHhccC---------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH
Confidence 6666666666542 234445555455555555555666666555554 334666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG---KMDEASSLLDLMIQH 219 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~ 219 (256)
|++++|.-.++++.-.. +.+...+..+...+-..| +...+.+.|.+..+.
T Consensus 168 ~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred hHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 66666666666666542 234444444444443333 344556666665554
No 109
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.62 E-value=0.00011 Score=59.33 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=98.9
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
.+.+|++..-...|+..+..-|...-..+|...+......+-++-+.+++++..+. ++..-..-+..+...+++++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence 45678888889999998887766555678999999999999999999999998865 34446777888888899999
Q ss_pred HHHHHHHHHhcCC------CCchhhHHhhh-------------------h-h--cCC--CHHHHHHHHHHHHhcCCHHHH
Q 047518 90 GFVVLGRILRSCF------TPDVVTFTSLI-------------------K-V--CKP--DAITYNTIIDGLCKQGFVDKA 139 (256)
Q Consensus 90 a~~~~~~~~~~~~------~~~~~~~~~ll-------------------~-~--~~~--~~~~~~~l~~~~~~~~~~~~a 139 (256)
|.+.+...+.... +.+...|..+. + + .-+ -...|+.|.+.|.+.|.+++|
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9888887764311 11111111111 1 0 112 235789999999999999999
Q ss_pred HHHHHHHHhC
Q 047518 140 KELFLKMKDK 149 (256)
Q Consensus 140 ~~~~~~~~~~ 149 (256)
.++|++....
T Consensus 268 rDvyeeai~~ 277 (835)
T KOG2047|consen 268 RDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.00014 Score=57.55 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
+|..+++.-.+...++.|..+|.+..+.+..+ .+..+++++.-|| .++..-|.++|+--.+. ..-+..-....++.+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 45556666666777777777887777766655 5566666666654 46777788887775554 223444556667777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
...++-..+..+|++....++.|+ ...|..++.-=..-|+...++++-+++.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 778888888888888877755544 3578888877777888888877766654
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.8e-05 Score=55.82 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+.+..|.-+|++|.++ .+|+..+.+....++...|++++|..++++....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455555555555543 2345555555555555555555555555555544
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=0.00013 Score=56.80 Aligned_cols=119 Identities=11% Similarity=0.047 Sum_probs=76.9
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
+...|+++.|+..++.++.. .+.|+..+......+.+.++.++|.+.++.+....+. .....-.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~ 379 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---------------QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLN 379 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHH
Confidence 34556666666666665553 2344555566667777777777777777777766322 2445555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
+.+++.+.|++.+|..+++...... +-|...|..|..+|...|+..++.....+.
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6677777777777777777777653 446677777777777777766665555443
No 113
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.6e-05 Score=59.48 Aligned_cols=188 Identities=11% Similarity=0.011 Sum_probs=126.8
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
....++..|+.+-++.++..+. +...+-.=...+...++.+.|.-.|+...... +-+...|.-|+.+|...|.+.+|
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r--~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPR--NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcc--cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHH
Confidence 3455667777777776665443 55555555566667777777777777766542 23556777777777777777777
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHH-HH-HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII-DG-LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
...-....+. .+.+..+.+.+. .. +.....-++|.++++.-....+. -....+.+...|...
T Consensus 388 ~~~An~~~~~---------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 388 NALANWTIRL---------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHHHHHH---------------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhh
Confidence 6655554432 122333333321 11 11222346777777766654321 344567778888999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
|..+.+..++++.... .||....+.+.+.+...+.+++|...|......
T Consensus 452 g~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999998876 689999999999999999999999999988875
No 114
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=1.7e-05 Score=59.07 Aligned_cols=175 Identities=11% Similarity=0.040 Sum_probs=109.9
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhh-HHHHHHHHHh
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-HSILINCFCK 83 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 83 (256)
..|+.++..|++.+|+..|....+.+|. +-.++-.-...|...|+...|+.-+....+. +||-.. -..-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3466677889999999999998875543 4445555566777888888888888887775 566432 2223345678
Q ss_pred cCCcchHHHHHHHHHhcCCCCc--hhhHHh--------------------------------hhhhcCCCHHHHHHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPD--VVTFTS--------------------------------LIKVCKPDAITYNTIIDG 129 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~--------------------------------ll~~~~~~~~~~~~l~~~ 129 (256)
.|.++.|..-|+.+++..-... ...... ++...+-|...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 8888888888888887532111 111111 111334455666666777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
|...|++..|+.=+....+..-. +..++--+-..+...|+.+.++..+++..+.
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 88888888887766666554322 4444444555555666666666666666554
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.57 E-value=3.5e-05 Score=64.01 Aligned_cols=229 Identities=17% Similarity=0.157 Sum_probs=141.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+.+.+..+++..|+.-..++.+..|..+-+.++..+ ...+.|+.++|..+++.....+.. |..|...+-.+|.+.++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 345677889999999999999977663333333333 235789999999999988777644 88899999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
.++|..+|++..+. -|+......+..+|.+.+.+.+-.++--++-+. .+-+...+=.+++...
T Consensus 93 ~d~~~~~Ye~~~~~----------------~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 93 LDEAVHLYERANQK----------------YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLIL 155 (932)
T ss_pred hhHHHHHHHHHHhh----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHH
Confidence 99999999999885 244555566677888887776555554444432 1112222222222221
Q ss_pred c----cCC------HHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHhHHHHHHH
Q 047518 167 Y----AND------WNEAKRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 167 ~----~~~------~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~ 234 (256)
+ ... ..-|...++.+.+.+ .--+..-....+..+...|++++|..++ ....+.-..-+...-+.-+..
T Consensus 156 qs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dl 235 (932)
T KOG2053|consen 156 QSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDL 235 (932)
T ss_pred HhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 1 111 223555555555443 1122222333344556778888888888 344333222233333445556
Q ss_pred HHhcCChhHHHHHHHHHHhcC
Q 047518 235 FCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 235 ~~~~g~~~~a~~~~~~m~~~g 255 (256)
+...++|.+-.++..++..+|
T Consensus 236 lk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 236 LKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcChHHHHHHHHHHHHhC
Confidence 666777777777666666554
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.57 E-value=1.4e-07 Score=46.44 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=27.3
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 70 (256)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888776
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=3.2e-05 Score=55.52 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 74 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
...-...|...+++++|++....... ......=+..+.+..+.+.|.+.++.|.+..
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~--------------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--- 167 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGEN--------------------LEAAALNVQILLKMHRFDLAEKELKKMQQID--- 167 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccch--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence 33344567788888888887765211 1122222456778888999999999998863
Q ss_pred chHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 154 NVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 154 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
+..|.+.|..++.+ .+....|.-+|+++-+. ..|+..+.+..+.++...|++++|..+++...... .-++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHH
Confidence 66677777777643 35688999999999875 47888999999999999999999999999998764 44677777
Q ss_pred HHHHHHHhcCChhHHH-HHHHHHH
Q 047518 230 TLLDGFCLTGRVNHAK-ELFVSME 252 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~-~~~~~m~ 252 (256)
.++-+-...|...++. +.+.+++
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Confidence 7777766777765543 3444443
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.55 E-value=1.9e-07 Score=45.96 Aligned_cols=33 Identities=55% Similarity=1.009 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777765
No 119
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.54 E-value=1.9e-07 Score=45.64 Aligned_cols=32 Identities=44% Similarity=0.663 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
+|+.++.+|.+.|+++.|..+|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 56666666666666666666666666666655
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=0.00019 Score=56.02 Aligned_cols=123 Identities=18% Similarity=0.074 Sum_probs=101.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhc
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKN 203 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 203 (256)
.....+...|++++|+..++.+....+ -|..........+...++..+|.+.++++... .|+ ......+..++.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 344566788999999999999887633 36666677778899999999999999999987 455 66778889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
|++.+|.++++..... .+-++..|..|.++|...|+..++.....+.
T Consensus 388 g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 388 GKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred CChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9999999999998876 4678899999999999988877776655443
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=1.6e-05 Score=61.75 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=98.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (256)
....++..+...++++.|+.+++++.+.. | .....++..+...++-.+|.+++++......
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p----------------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p- 231 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--P----------------EVAVLLARVYLLMNEEVEAIRLLNEALKENP- 231 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--C----------------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-
Confidence 34455666677889999999999998852 2 2344577888888888999999998886643
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
-+..........+...++++.|+.+.+++.+.. +-+-.+|..|..+|...|+++.|+..++.+.
T Consensus 232 ~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 232 QDSELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 366677777778889999999999999999872 3345599999999999999999998888764
No 122
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.1e-05 Score=58.95 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=137.2
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
-+...+..+.+..++++|++++..-.+.. +.+......+..+|....++..|...|+++... .|...-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl------ 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL------ 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH------
Confidence 36677777888899999999999887774 237778889999999999999999999998874 333222211
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH--HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR--GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
| -...+.+.+.+..|+++...|.+. |+...-..-+. .....+++..+..++++....| +..+.+.
T Consensus 83 -----Y--~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in 149 (459)
T KOG4340|consen 83 -----Y--QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQIN 149 (459)
T ss_pred -----H--HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhcc
Confidence 1 245667788899999999888764 22222111222 2245677777877777665332 4445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
......+.|+++.|.+-|+...+-+---....|+..+..| +.|+.+.|+++..+++++|+
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 5555678899999999998887654333445676665544 56889999999999998885
No 123
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.53 E-value=2e-07 Score=45.57 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP 69 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 69 (256)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888777766
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=2e-05 Score=64.03 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=148.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCC
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 119 (256)
..+...+...|-...|..+|+++. .|..++.+|...|+..+|..+..+..+. +|++..|..+. .+..|
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG-Dv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG-DVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh-hhccC
Confidence 467778888899999999998764 4677888999999999999999888873 45555444432 22233
Q ss_pred HHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 120 AITYNTI---------------IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 120 ~~~~~~l---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...|... .....+.++++++.+.|+.-..... ....+|-..-.+..+.+++..|.+.|......
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 3322221 1112335677777777776555432 25566766777778889999999999998876
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
. +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+.
T Consensus 549 ~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 549 E-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred C-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 3 2346789999999999999999999999999877 445667777777888999999999999988753
No 125
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.49 E-value=2.1e-07 Score=44.40 Aligned_cols=30 Identities=40% Similarity=0.795 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
+|+.++++|++.|++++|.+++++|.+.||
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888888775
No 126
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.47 E-value=4.9e-06 Score=64.93 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
.+......+++.+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 44555666777888888899999999988765 2222334557999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
+++.+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998877777777776666666554
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=3.3e-05 Score=51.87 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..|..++..+ ..++...+...++.+.+.. |+. .| .....-.+...+...|++++|...|+.+.....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s-~y---------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSS-PY---------AALAALQLAKAAYEQGDYDEAKAALEKALANAP 79 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCC-hH---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 3455555555 4788888888888888752 111 00 122344566889999999999999999998763
Q ss_pred CCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 152 KPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 152 ~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
.|+ ......+...+...|++++|+..++..... ......+.....++.+.|++++|...|+..
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333 234455778889999999999999775443 344567778899999999999999999864
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=8.8e-05 Score=63.25 Aligned_cols=207 Identities=12% Similarity=0.080 Sum_probs=136.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CC-----------------C
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GL-----------------F 68 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-----------------~ 68 (256)
+..+...+++++|.++.+...+..|. ....|-.+...+.+.++..++..+ .+... .- .
T Consensus 38 i~~~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~ 113 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYG 113 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhh
Confidence 34556889999999999988876665 444455555567777776666555 22211 10 1
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
-+...+..+..+|-+.|+.+++..+|+++++.. +.|+.+.|.+.-.|... ++++|..++.+...
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---------------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---------------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 122566778888889999999999999999863 34677888888899988 99999999988765
Q ss_pred CCCCCchHHHHHHHHH-----HhccCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047518 149 KNVKPNVVTYTSVIRG-----FCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (256)
.-+ +..-|+.+... .....+.+.-..+.+.+... |..--..++..+-..|....+|+++..+++.+.+.. +
T Consensus 178 ~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~ 254 (906)
T PRK14720 178 RFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-N 254 (906)
T ss_pred HHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-C
Confidence 411 11111111110 11223344444444444433 333345566667788888999999999999999864 4
Q ss_pred CCHHhHHHHHHHHH
Q 047518 223 PDAFTYNTLLDGFC 236 (256)
Q Consensus 223 ~~~~~~~~l~~~~~ 236 (256)
-|.....-++.+|.
T Consensus 255 ~n~~a~~~l~~~y~ 268 (906)
T PRK14720 255 KNNKAREELIRFYK 268 (906)
T ss_pred cchhhHHHHHHHHH
Confidence 46667777888776
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=5.3e-07 Score=65.47 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=88.8
Q ss_pred CccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 047518 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80 (256)
Q Consensus 1 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (256)
|+|+-.|+...+.++|++|+..|.+.+...|. |++.|..-..+|.+.|.++.|++-.+..+... +-...+|..|..+
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A 158 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 45677788899999999999999999998775 88889999999999999999999999988763 2234699999999
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCchhhH
Q 047518 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTF 109 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (256)
|...|++++|++.|++.++. .|+..+|
T Consensus 159 ~~~~gk~~~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHccCcHHHHHHHHHhhhcc--CCCcHHH
Confidence 99999999999999998873 5554443
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00021 Score=51.12 Aligned_cols=187 Identities=12% Similarity=0.122 Sum_probs=112.5
Q ss_pred cCChHHHHHHHHHHhhC---C-CCCCHh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHH
Q 047518 49 NKHYDTVLSLFKRLNST---G-LFPDLY-THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 123 (256)
..+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++..+- |. +..+-
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~-------------S~RV~ 89 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PG-------------SKRVG 89 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CC-------------ChhHH
Confidence 34556666666665332 2 344443 45555556666777777777777776641 11 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
-.-...+-..|++++|.++|+.+.+.++ .|..++-.-+...-..|+.-+|++-+.+..+. +..|...|..+...|...
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH
Confidence 1112234556777788888887777653 35556665555666667777777777777665 456777788888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHh
Q 047518 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKELFVSMES 253 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 253 (256)
|++++|.-.++++.=.. |.++..+..+...+.-.| +.+-|.+++.+..+
T Consensus 168 ~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred hHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888887777776542 345555566666543333 34456666655544
No 131
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7.6e-05 Score=58.69 Aligned_cols=209 Identities=11% Similarity=0.097 Sum_probs=152.0
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHH-------HH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI-------LI 78 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~ 78 (256)
.|+...+..+++.|++.+....... . +..-++....+|...|.+.+....-+...+.|-. ...-|+. +.
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~-~--~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA-T--DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh-h--hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 3555667788999999999998866 4 6667888889999999999888888887776632 2233333 33
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh----------hcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------VCKPDA-ITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----------~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
.+|.+.++++.++.+|.+.+..-..|+...-..... ...|.. .-...-...+.+.|++..|+..|.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 456667888999999999877655555443333222 112222 112223667889999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
...+ -|...|+...-+|.+.|.+..|+.-.+...+.. ++....|.-=..++....++++|.+.|.+.++.+
T Consensus 386 kr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 386 KRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8874 488999999999999999999999888888763 3344555555666667778999999999888763
No 132
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.42 E-value=9.3e-06 Score=50.34 Aligned_cols=77 Identities=16% Similarity=0.357 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYAN--------DWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
..|.-+...+++.....+|+.++..|+ .|+..+|+.++.+..+.. +....+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 777777777777655432 23345555666666666666666666
Q ss_pred HHHHHH
Q 047518 196 IMDELC 201 (256)
Q Consensus 196 ll~~~~ 201 (256)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665544
No 133
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.41 E-value=3.4e-07 Score=55.25 Aligned_cols=82 Identities=16% Similarity=0.376 Sum_probs=63.7
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.|+++.|+.+|+++....+..++...+..+..++.+.|++++|..+++. .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 6899999999999999877423455666689999999999999999988 33321 233555566899999999999999
Q ss_pred HHHH
Q 047518 93 VLGR 96 (256)
Q Consensus 93 ~~~~ 96 (256)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9876
No 134
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.40 E-value=1.3e-05 Score=49.74 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=67.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVIMDELCKNG--------KMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.++++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455556667999999999999999999 899999999999987654 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 047518 230 TLLDGFCL 237 (256)
Q Consensus 230 ~l~~~~~~ 237 (256)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99998765
No 135
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.40 E-value=0.00015 Score=63.76 Aligned_cols=232 Identities=10% Similarity=0.047 Sum_probs=129.8
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhCCC---CCC--HhhHHHHHHH
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL---FPD--LYTHSILINC 80 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~ 80 (256)
+...|++++|...+++.....+. .+. ...+.+...+...|+++.|...+++.....- .+. ..++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 45688999999999998764332 221 2345666777889999999999988754311 111 2345566777
Q ss_pred HHhcCCcchHHHHHHHHHhcCC---CCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 047518 81 FCKMGRVSHGFVVLGRILRSCF---TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVKP 153 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 153 (256)
+...|+++.|...+++.....- .++. ......+..+...+...|++++|...+.+.... +...
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQL----------PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccc----------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 8899999999999988765310 0000 001223344555666778888888877766432 1111
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCcHH--HH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQPNVV--TF--NVIMDELCKNGKMDEASSLLDLMIQHGVRPD--- 224 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 224 (256)
....+..+...+...|+.++|...++...... ...... .. ...+..+...|+.+.|...+...........
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23334445556677788888887777764321 010000 00 0111233445666666666554432111100
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 225 AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
...+..+..++...|++++|...+++..
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0112334445556666666666665543
No 136
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=0.00018 Score=63.27 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=151.4
Q ss_pred CCCcCChhhHHHHHHHHHHhCCC----CCCcccHHHHHHHHHccCChHHHHHHHHHHhhC----CCC--C-CHhhHHHHH
Q 047518 10 DITTITPNEALCIFDYMLRMHPS----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLF--P-DLYTHSILI 78 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~ 78 (256)
+...|++++|...+++....... .....++..+...+...|+++.|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 45689999999999987654221 011234456677888999999999998876442 221 1 223445566
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVKPN 154 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 154 (256)
..+...|++++|...+++.......... ......+..+...+...|++++|...+...... +....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQP----------QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCc----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 6777889999999999887663211000 011234555677888999999999999887542 11101
Q ss_pred hHHH--HHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-
Q 047518 155 VVTY--TSVIRGFCYANDWNEAKRLFIEMMDQGVQPN---VVTFNVIMDELCKNGKMDEASSLLDLMIQH----GVRPD- 224 (256)
Q Consensus 155 ~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~- 224 (256)
.... ...+..+...|+.+.|..++........... ...+..+..++...|++++|...+++.... |..++
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1010 1122444567899999998877654211111 112456777888999999999999987642 32222
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 225 AFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+...+..++.+.|+.++|...+.+..+
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566677788999999999999988765
No 137
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00015 Score=54.52 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=34.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 62 (256)
+..+...|++++|+..|..+..... ++...+..+.-++.-.|.+.+|..+-...
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 3345667788888888777765332 45666666666666667777776655543
No 138
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00011 Score=62.36 Aligned_cols=150 Identities=10% Similarity=0.119 Sum_probs=93.7
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh--
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-- 114 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-- 114 (256)
..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.|++-.+++....+..-.|...+-..+--
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 45777777777777777776665332 3677899999999999999999999988888777776553221110
Q ss_pred ----------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 115 ----------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 115 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...|+......+.+-|...+.++.|.-+|. +...|..+...+...|++..|...-++.
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 123455555555555666666666555554 3334566666777777777766554433
Q ss_pred CCCCcHHHHHHHHHHHHhcCChh
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
.+..+|..+-.+|...+.+.
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhh
Confidence 23445555555555544443
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.36 E-value=5.5e-05 Score=48.75 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CcHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--PNVVTFNVIM 197 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 197 (256)
++..++..+.+.|++++|...|..+...... .....+..+..++...|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556777888999999999999998875321 12346667888899999999999999998875322 1245677888
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047518 198 DELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.++...|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 8889999999999999999876
No 140
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.36 E-value=3.5e-05 Score=57.71 Aligned_cols=130 Identities=11% Similarity=0.177 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG-FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
.+|..++...-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688889999999999999999999986532 245555555544 33467788899999999977 46678889999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999875 33333 4889999888899999999999988765
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.36 E-value=1.9e-05 Score=48.31 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
+..+...+...|++++|...+....+.... +...+..+...+...+++++|...++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 334445555555555555555555544221 22344445555555555555555555555442 2222344445555555
Q ss_pred cCChhHHHHHHHHHH
Q 047518 203 NGKMDEASSLLDLMI 217 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~ 217 (256)
.|++++|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555555444
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.34 E-value=1.4e-06 Score=57.82 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=82.2
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
..+..+...|++++|..+|+.+....|. +..-|-.|..++...|++++|+..|....... +.|+..+-.+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 3455667899999999999999998776 78889999999999999999999999998886 35778888899999999
Q ss_pred CCcchHHHHHHHHHhc
Q 047518 85 GRVSHGFVVLGRILRS 100 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~ 100 (256)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988774
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.33 E-value=3.9e-06 Score=65.00 Aligned_cols=95 Identities=6% Similarity=-0.051 Sum_probs=83.5
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|...|......|++++|++.|++.++..+. +...|..+..++.+.|++++|+..++++.+.. +.+...|..+..+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 344567778899999999999999998875 77789999999999999999999999998874 336678889999999
Q ss_pred hcCCcchHHHHHHHHHhc
Q 047518 83 KMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~ 100 (256)
..|++++|+..|++.++.
T Consensus 82 ~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 82 KLEEYQTAKAALEKGASL 99 (356)
T ss_pred HhCCHHHHHHHHHHHHHh
Confidence 999999999999999885
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.33 E-value=5.2e-05 Score=52.54 Aligned_cols=106 Identities=10% Similarity=0.024 Sum_probs=75.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 22 IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
++..+....+.+.....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334433333334455678888899999999999999999986543322 46788899999999999999999999887
Q ss_pred cCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047518 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142 (256)
Q Consensus 100 ~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (256)
. . +.+...+..+..++...|+...+..-
T Consensus 101 ~--~-------------p~~~~~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 101 L--N-------------PKQPSALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred h--C-------------cccHHHHHHHHHHHHHcCChHhHhhC
Confidence 4 1 23455566677778777775554433
No 145
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.32 E-value=0.001 Score=53.98 Aligned_cols=240 Identities=11% Similarity=0.106 Sum_probs=155.5
Q ss_pred CCcCChhhHHHHHHHHHHh-CCCC---CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHh
Q 047518 11 ITTITPNEALCIFDYMLRM-HPSP---PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTHSILINCFCK 83 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 83 (256)
+..|++.+-...|.+..+. +|.. .....|..+...|-..|+.+.|..+|++..+...+-- ..+|......-.+
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 4567788888888887764 2321 1123578888999999999999999999987654422 3466666666667
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhh---hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLI---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
..+++.|.++.+......-.|...-|.... ..+..+...|...++.--..|-++....+|+++.+..+. ++.....
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN 516 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 788888888887765432111101110000 011235667888888888889999999999999887665 3333233
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHhHHHH--HHH
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNV-VTFNVIMDELCK---NGKMDEASSLLDLMIQHGVRPDAFTYNTL--LDG 234 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~ 234 (256)
....+.....++++.+++++-+..-..|+. ..|+..+.-+.+ ....+.|..+|++.++ |.+|...-+--| ...
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 333345566788888888877665434553 467766665543 2368899999999998 566654422222 222
Q ss_pred HHhcCChhHHHHHHHHHH
Q 047518 235 FCLTGRVNHAKELFVSME 252 (256)
Q Consensus 235 ~~~~g~~~~a~~~~~~m~ 252 (256)
=.+.|....|+.++++..
T Consensus 596 EEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 234577778888887754
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.32 E-value=2e-05 Score=54.44 Aligned_cols=96 Identities=10% Similarity=-0.012 Sum_probs=73.9
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC--CHhhHHHHHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP--DLYTHSILINCFC 82 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 82 (256)
+....+.-...+..+...+..+.+..........|..+...+...|++++|+..|+........+ ...++..+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~ 83 (168)
T CHL00033 4 SQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT 83 (168)
T ss_pred ccccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 44556666667888888887775544432345667888889999999999999999997653222 2357888999999
Q ss_pred hcCCcchHHHHHHHHHhc
Q 047518 83 KMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~ 100 (256)
..|++++|+..+++..+.
T Consensus 84 ~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 84 SNGEHTKALEYYFQALER 101 (168)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998874
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.29 E-value=5e-05 Score=48.94 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV--RPDAFTYNTL 231 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l 231 (256)
.++-.+...+...|++++|...++.+...... .....+..+..++.+.|++++|...|+.+..... +.....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566777888999999999999999876321 1135667789999999999999999999986421 1225668888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 047518 232 LDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..++.+.|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=2.5e-06 Score=51.43 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 168 ANDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ +.+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45667777777777665321 2344455566777777777777777766 2211 1122344445666777777777777
Q ss_pred HHHH
Q 047518 247 LFVS 250 (256)
Q Consensus 247 ~~~~ 250 (256)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=4e-05 Score=46.79 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=79.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
+..+...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556777888999999999999998764 3345778888999999999999999999988764 4455688888999999
Q ss_pred cCChhHHHHHHHHHHhc
Q 047518 238 TGRVNHAKELFVSMESM 254 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~~ 254 (256)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999887654
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.28 E-value=3.1e-05 Score=60.58 Aligned_cols=125 Identities=16% Similarity=0.089 Sum_probs=87.2
Q ss_pred CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 67 LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
.+.+......+++.+....+.+.+..++.+..... ... ..-..+..++++.|.+.|..+.++.++..=
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~---~~~---------~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP---NCS---------YLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc---ccc---------cccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 34455666777777777777777777777766541 111 011223457788888888888888888888
Q ss_pred HhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
...|+-||..+++.+++.+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888888888888887666555666665555555544
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.28 E-value=0.00039 Score=50.95 Aligned_cols=58 Identities=7% Similarity=0.078 Sum_probs=35.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQH--GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455566677777777777766653 122233455566677777777777776665544
No 152
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00014 Score=60.44 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=125.3
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
+..|.+++|+.+|.+-.+ |..|=..|...|.|++|.++-+.=.+-.+ ..||.....-+-..++.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 456778888888887755 44555667778889998888766444332 35677777777778889999
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhh---------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIK---------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
+++|++.... .-.++..+.. .-..|...|..-....-..|+.+.|+.+|...++ |-.+
T Consensus 878 leyyEK~~~h----afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 878 LEYYEKAGVH----AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHhcCCh----HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 9888764322 1111111111 1245677777778888889999999999987664 4567
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
++..|-+|+.++|.++-++- -|......+.+.|...|++.+|..+|.+...
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 77778889999998876653 2566777888999999999999988877653
No 153
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=0.00014 Score=60.43 Aligned_cols=211 Identities=15% Similarity=0.119 Sum_probs=134.7
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-C--------CCCCHhhHHHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-G--------LFPDLYTHSILI 78 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~ 78 (256)
+-|+..|+.+.|.+-.+.+. +...|..|.++|.+.++.+-|.-.+-.|... | -.|+ .+=....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvA 807 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVA 807 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHH
Confidence 45788999999988887773 4467999999999999988877666555321 1 1122 2222233
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (256)
-.....|.+++|..+|++..+ |..|=..|...|.|++|.++-+.-....+ ..||
T Consensus 808 vLAieLgMlEeA~~lYr~ckR-----------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKR-----------------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHH-----------------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 344677899999999988776 33444567777888888777654333222 2344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH----------HcC---------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMM----------DQG---------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
......+...++.+.|++.|++.. ... -.-|...|.-....+...|+.+.|+.+|....+.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 445555555566766666665421 110 1224455666666666777877777777766541
Q ss_pred ----------C----------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 220 ----------G----------VRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 220 ----------~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
| -.-|...-..+.+.|...|++.+|..+|-+..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1 01244455567888999999999998887654
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.25 E-value=1.9e-06 Score=40.94 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=22.8
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 66 (256)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67788888888888888888888887765
No 155
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00012 Score=54.93 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT-SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV-TFNVIMDEL 200 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~ 200 (256)
--.+..+++..|.+.+|+++|-.+....++ |..+|. .+.++|.+.+.++.|+.++-.+-. ..+.. ....+..-|
T Consensus 396 n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~C 471 (557)
T KOG3785|consen 396 NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDC 471 (557)
T ss_pred hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHH
Confidence 345788999999999999999888766665 555554 555788899999988776544422 22333 334455678
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
-+.+.+--|.+.|+.+... .|++..|
T Consensus 472 Yk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 472 YKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 8889988899999888765 4555544
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.20 E-value=0.00048 Score=51.83 Aligned_cols=197 Identities=13% Similarity=0.148 Sum_probs=102.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhh----CCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNS----TGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
|......|...|++++|.+.|.+... .+-+.+ ...|.....+|.+. ++++|+..+++..+.-...+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-------- 108 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-------- 108 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--------
Confidence 45555666677777777777776522 121111 22445555554443 77777777777655200000
Q ss_pred hhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 114 KVCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDK----NVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.+..-...+..+...|... |++++|...|.+..+. +.+ .-...+..+...+.+.|++++|..+|++.......
T Consensus 109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 0011123455666677777 7888888888776432 211 11344566667777888888888888877754221
Q ss_pred -----CcHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh------HHHHHHHHHhcCChhHHHHHH
Q 047518 188 -----PNVV-TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT------YNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 188 -----~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~ 248 (256)
++.. .+...+-++...||+-.|.+.+++.... .|+... ...|+.+| ..||.+...+.+
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~--~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av 257 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ--DPSFASSREYKFLEDLLEAY-EEGDVEAFTEAV 257 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT--STTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHC
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 1221 2233344566677888888888777653 454432 23344443 345555444433
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.19 E-value=3.4e-06 Score=48.53 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=51.7
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 78 (256)
+..|++++|++.|+++....|. +...+..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4578999999999999998775 7778889999999999999999999999887 45645544443
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.19 E-value=0.00027 Score=48.94 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677888889999999999999999887543332 4678888899999999999999999999863 2346667777
Q ss_pred HHHHHhcCC
Q 047518 197 MDELCKNGK 205 (256)
Q Consensus 197 l~~~~~~g~ 205 (256)
..++...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 778877776
No 159
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00028 Score=56.37 Aligned_cols=181 Identities=10% Similarity=0.013 Sum_probs=113.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHH
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 121 (256)
=++.+...+++++|.+...++...+ +.+...+..-+-+..+.+.+++|+.+.+.-... . .+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~--------------~~~~ 80 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--L--------------VINS 80 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--h--------------hcch
Confidence 3456677889999999999999876 556677777777899999999998655432210 0 0000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV--TFNVIMDE 199 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~ 199 (256)
.+.--.-+..+.+..++|+..++..... +..+...-.+.+.+.|++++|+.+|+.+.+.+.. +.. .-..++.+
T Consensus 81 ~~fEKAYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 81 FFFEKAYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAV 155 (652)
T ss_pred hhHHHHHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 1111123456789999999999833322 3446666778889999999999999999887532 321 11111111
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+-...+. +.+.. ...| +...+......+...|++.+|+++++...
T Consensus 156 ----~a~l~~~-~~q~v---~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 156 ----AAALQVQ-LLQSV---PEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred ----HHhhhHH-HHHhc---cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1111111 22222 1223 22233333456678899999999998874
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.18 E-value=0.00016 Score=56.22 Aligned_cols=91 Identities=11% Similarity=0.004 Sum_probs=79.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
...+...|++++|+..|.+....... +...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 45677889999999999999987654 67788888999999999999999999999874 34677888899999999999
Q ss_pred hHHHHHHHHHHHC
Q 047518 207 DEASSLLDLMIQH 219 (256)
Q Consensus 207 ~~a~~~~~~~~~~ 219 (256)
++|...|+...+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 161
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00034 Score=59.56 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=108.6
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
.+..+-+++|..+|++.. .+..+.+.|+. .-++.++|.+.-++.. .+..|..+..+-.+.|...+
T Consensus 1058 ai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHH
Confidence 345556666666666541 24444555554 2345566655554432 34577888888778887777
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 169 (256)
|++-|-+ ..|+..|.-+++...+.|.|++-.+.+.-.++...+|... +.+|-+|++.+
T Consensus 1123 AieSyik--------------------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1123 AIESYIK--------------------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHh--------------------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence 7765522 2467788899999999999999999998888877777766 56888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (256)
+..+.++++ ..||......+.+-|...|.++.|.-+|.
T Consensus 1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 988776654 24566666666666666666665555554
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.14 E-value=0.00056 Score=43.93 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDEL 200 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~ 200 (256)
.+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++....... .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345678889999999999999999887644 345667778899999999999999999876311 1223334445577
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
...|+.++|...+-..... +..-|..-|..|..
T Consensus 86 ~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE----TLPRYRRAIRFYAD 118 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 8899999999998776643 34467666666653
No 163
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.14 E-value=0.0022 Score=53.04 Aligned_cols=182 Identities=10% Similarity=0.086 Sum_probs=97.0
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.+...|..+.-+....|+++.+-+.|++....-+ -....|+.+...|...|.-..|..+++......-.|+..+.-.+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 4677788888888888888888888888765432 245667777777777787777777777665542222211110000
Q ss_pred h---------------------------hcCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCch
Q 047518 114 K---------------------------VCKPDAITYNTIIDGLCKQ-----------GFVDKAKELFLKMKDKNVKPNV 155 (256)
Q Consensus 114 ~---------------------------~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 155 (256)
. .-...+..|..+.-+|... ....++++.+++..+.+.. |.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 0 0001112222222222211 1123444555555444332 22
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.+.--+.--|+..++.+.|.+..++..+.+...+...|..+...+...+++..|+.+.+...
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 22222223344556666666666666665445556666666666666666666666665544
No 164
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.13 E-value=0.00043 Score=58.72 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=109.9
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 93 (256)
.+...|+..|-+..+..+. =...|..|...|+...+..+|.+.|+...+.. .-+..........|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 3466777777777665554 45578888888888888888999998887764 23566778888888888888888887
Q ss_pred HHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHH
Q 047518 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 173 (256)
.-..-+. .|- . .-...|....-.|.+.++...|..-|+......++ |...|..+..+|...|++..
T Consensus 549 ~l~~~qk--a~a-~----------~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 549 CLRAAQK--APA-F----------ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred HHHHhhh--chH-H----------HHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceeh
Confidence 3332221 000 0 00111222333455566666666666666555443 55666666666666666666
Q ss_pred HHHHHHHHHHcCCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 174 AKRLFIEMMDQGVQPNV-VTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
|.++|.+.... .|+. ..--.....-+..|++.+|...+....
T Consensus 615 AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 615 ALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666665553 3321 111112223345566666666665544
No 165
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.11 E-value=0.00035 Score=52.38 Aligned_cols=208 Identities=11% Similarity=0.074 Sum_probs=145.1
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
+....+...|+...|+.....+++..| .|+..+..-..+|...|.+..|+.-+....+.. ..+..++..+-..+...
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhh
Confidence 344556778999999999999988666 488889999999999999999998888776654 33566677778888889
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---HHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV---VTYTSV 161 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 161 (256)
|+.+.++...++.++. .|+.-..-.....++.-+.... -+......++|.+++...+...+..+.... ..+..+
T Consensus 237 gd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le-s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE-SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred hhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence 9999999988888874 4543221111110000000000 123455678888888888888776543222 234455
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
-.++...+++.+|++...+..+.. +.|..++..-..+|.-...++.|+.=|+...+.
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 566777888999999999988763 234777777778888788888888888777654
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.11 E-value=0.00026 Score=48.87 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 197 (256)
...|..+...+...|++++|...|.........+ ...++..+...+...|++++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456777788888999999999999987654332 23578888899999999999999999998763 33345566666
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 047518 198 DELC-------KNGKMDEASSLLDLM 216 (256)
Q Consensus 198 ~~~~-------~~g~~~~a~~~~~~~ 216 (256)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 778877665555543
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.11 E-value=0.00029 Score=47.05 Aligned_cols=99 Identities=10% Similarity=-0.065 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+....-.+..-+...|++++|.++|+.+....+. +..-|-.|--++-..|++.+|+..|....... +-|...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3344455566677788888888888888776544 56667777778888888888888888888775 346777778888
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 047518 199 ELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~ 219 (256)
++...|+.+.|.+.|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877653
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.10 E-value=0.00033 Score=52.60 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK-MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
.+|..++....+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+..++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------------- 65 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------
Confidence 357888888888888999999999988553 2244555554444333 46666689999888874
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV---VTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
++.+...|...++.+.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567778888888888999999999999988765 33222 47888888778888999888888888765
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.09 E-value=0.00018 Score=50.47 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=63.5
Q ss_pred CCcccHHHHHHHHHcc-----CChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhh
Q 047518 34 PPVSSFNIMLGCLAKN-----KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 108 (256)
.+-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+. -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 4555666666666533 4455555556666666666666666666665543 2221 1111111111
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC
Q 047518 109 FTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170 (256)
Q Consensus 109 ~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 170 (256)
-.-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 114 ----------------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ----------------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1123456789999999999999999999999999955543
No 170
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.03 E-value=0.00019 Score=50.30 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC----------------CHHHHH
Q 047518 117 KPDAITYNTIIDGLCK-----QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN----------------DWNEAK 175 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~ 175 (256)
..+..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4677788888887765 4677777777888888888888888888888764321 123344
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 176 RLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
+++++|...|+-||..++..++..+++.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 4444444444444444444444444433
No 171
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.02 E-value=0.00014 Score=59.89 Aligned_cols=52 Identities=6% Similarity=0.113 Sum_probs=25.2
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHH
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
-+.+....+.|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|.
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHH
Confidence 3444445555555555555554432 122234445555555555555555553
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.0026 Score=46.71 Aligned_cols=63 Identities=11% Similarity=-0.054 Sum_probs=35.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
....+...|++++|+..|+++... .|.... -....-.++.+|.+.+++++|...+++..+..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~----------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPY----------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChH----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 444455667777777777777664 111100 001123455667777777777777777766543
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00022 Score=52.27 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=85.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
+-..+.++|++|+..|.+..+..+. |.+-|..-..+|.+.|.++.|.+-.+..+... +-...+|..|..+|...|++.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4467889999999999999988654 78889999999999999999999888888764 224678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047518 208 EASSLLDLMIQHGVRPDAFTYNTLLDGF 235 (256)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (256)
+|++.|++.++ +.|+-.+|..=+...
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 99999998887 467777766555443
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.99 E-value=0.00046 Score=51.92 Aligned_cols=209 Identities=10% Similarity=0.082 Sum_probs=111.8
Q ss_pred CCCcCChhhHHHHHHHHHHhCC----CCCCcccHHHHHHHHHccCChHHHHHHHHHHhh----CCCCCC--HhhHHHHHH
Q 047518 10 DITTITPNEALCIFDYMLRMHP----SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS----TGLFPD--LYTHSILIN 79 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~ 79 (256)
|...|++++|.+.|.+...... ...-...|.....+|.+. ++++|...+++... .| .|+ ...+..+..
T Consensus 45 fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 45 FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAE 122 (282)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Confidence 4445666666666665433211 101122344444444433 77777777776533 33 223 235666777
Q ss_pred HHHhc-CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----C
Q 047518 80 CFCKM-GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-----P 153 (256)
Q Consensus 80 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 153 (256)
.|-.. |+++.|++.|++..+.-...+.. ..-...+..+...+.+.|++++|..+|+++...... .
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~---------~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSP---------HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCCh---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 77777 78888888888876631100000 011235667888999999999999999998765332 2
Q ss_pred chH-HHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 154 NVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 154 ~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
+.. .|-..+-++...||+..|...+++..... +.. .......|+.++ +.|+.+.....+.+.... .+.|..--
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~-~~ld~w~~ 271 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSI-SRLDNWKT 271 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTS-S---HHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHccc-CccHHHHH
Confidence 222 23334446667899999999999988652 211 234455556654 455555554444444332 23444433
Q ss_pred HHH
Q 047518 229 NTL 231 (256)
Q Consensus 229 ~~l 231 (256)
..|
T Consensus 272 ~~l 274 (282)
T PF14938_consen 272 KML 274 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.94 E-value=0.0055 Score=50.13 Aligned_cols=137 Identities=10% Similarity=0.055 Sum_probs=96.7
Q ss_pred hcCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC--------CHHHHHHHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCK--Q---GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN--------DWNEAKRLFIEM 181 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~ 181 (256)
..+.+...|...+.+... . +..+.|..+|++..+..+. ....|..+..++.... ++..+.+..+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456788899988877544 2 2377999999999987543 3445554444332221 233444444443
Q ss_pred HHc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 182 MDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 182 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
... ....+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 332 123355778777777778899999999999999864 68889999999999999999999999887643
No 176
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.92 E-value=0.00041 Score=49.46 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=28.9
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHhhC
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPP-VSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 65 (256)
......|++.+|...|+.+....|.++- ..+.-.++.++.+.|+++.|...+++..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344556666666666666555443111 123344555556666666666666665443
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0029 Score=46.74 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=67.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CCcchHH
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM---GRVSHGF 91 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~ 91 (256)
.+++...-++.-.+.+|. |...|-.|...|...|++..|...|....+.. +++...+..+..++... ....++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 344444445555555554 66677777777777777777777777766553 23444554444444332 2233556
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
.+++++++. + +.++.+...|...+...|++.+|...|+.|.+..
T Consensus 214 ~ll~~al~~--D-------------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 214 ALLRQALAL--D-------------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHhc--C-------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666666653 1 2344455555666666677777777777666653
No 178
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.89 E-value=0.00046 Score=56.96 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=70.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
+.+-....+|.+|+.+++.+.+... -..-|..+.+.|+..|+++.|+++|.+. ..++..|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3455667788888888888877643 3345777888888889998888887543 2355667888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
.+|.++-.+... ...+...|..-..-+-++|++.+|.++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 888877665532 223344444444444455555444443
No 179
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.89 E-value=0.0032 Score=52.99 Aligned_cols=192 Identities=13% Similarity=0.140 Sum_probs=126.2
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
..+.|+.++|..+++.....++. |..+...+-.+|.+.++.++|..+|++.... -|+..-...+..+|.+.+.+.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 45789999999998888665554 8889999999999999999999999999876 5777777788889999887765
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC-CCCchHHH
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ----------GFVDKAKELFLKMKDKN-VKPNVVTY 158 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~-~~~~~~~~ 158 (256)
-.++--++.+. ++.+...+ -.+++.+... --..-|.+.++.+.+.+ ..-+..-.
T Consensus 129 qQkaa~~LyK~-~pk~~yyf--------------WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 129 QQKAALQLYKN-FPKRAYYF--------------WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHh-CCcccchH--------------HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 44444344431 22222222 2222222221 01234566666666554 11122222
Q ss_pred HHHHHHHhccCCHHHHHHHHHH-HHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 159 TSVIRGFCYANDWNEAKRLFIE-MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
..-.......|.+++|++++.. ..+.-...+...-+.-+..+...++|.+..++-.++...|
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 2223344567889999999844 3343333455555667777888899999998888888775
No 180
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.87 E-value=0.00059 Score=45.87 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
.++..+...|++++|..+...+....+ .+...|..+|.+|...|+...|.+.|+.+.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344445555555555555555555432 245555555555555555555555555543
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0026 Score=46.99 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=77.2
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCCCCcHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA---NDWNEAKRLFIEMMDQGVQPNVV 191 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~ 191 (256)
..+.|...|-.|..+|...|+.+.|...|....+... ++...+..+..++... ....++..+++++.... +-|..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHH
Confidence 4567788888888888888888888888888877633 3555666666555433 34677888888888765 34677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+...+...+...|++.+|...|+.|.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 7777888888888888888888888876
No 182
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.86 E-value=0.0079 Score=47.12 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 20 LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
+++-+++. .+| .|..+|-.|+.-+...+..+...+++++|... .+--..+|..-+.+-...+++...+.+|.+.+.
T Consensus 29 lrLRerIk-dNP--tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERIK-DNP--TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHhh-cCc--hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 34444443 233 47888899999888888888888888888754 222344566666555555666666666666555
Q ss_pred cC
Q 047518 100 SC 101 (256)
Q Consensus 100 ~~ 101 (256)
..
T Consensus 105 k~ 106 (660)
T COG5107 105 KS 106 (660)
T ss_pred hh
Confidence 43
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.85 E-value=0.00018 Score=40.87 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
..+...|++++|...|+.+.+.... +...+..+..++...|++++|...++++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555555555422 4455555555555555555555555555543
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.84 E-value=0.0026 Score=40.91 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++...
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555666666666666655554322 22444455555556666666666655554
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=0.00014 Score=41.28 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=28.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+...|++++|...++.+++.. +-+...+..+..++...|++++|...|+.+.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555543 22444555555555555555555555555544
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.82 E-value=0.0053 Score=50.21 Aligned_cols=143 Identities=11% Similarity=0.029 Sum_probs=90.6
Q ss_pred CCCCHhhHHHHHHHHHhcC-----CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc--------
Q 047518 67 LFPDLYTHSILINCFCKMG-----RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ-------- 133 (256)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~-------- 133 (256)
.+.+...|...+++..... ....|..+|+++++. +|+ ....|..+..+|...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~-------------~a~a~A~la~~~~~~~~~~~~~~ 397 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPD-------------FTYAQAEKALADIVRHSQQPLDE 397 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCC-------------cHHHHHHHHHHHHHHHhcCCccH
Confidence 3456677877777754322 255778888888774 333 222333332222221
Q ss_pred CCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 047518 134 GFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 134 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
.++..+.+........ ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|...
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1233444444443332 123345667777666667799999999999999874 6788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHhH
Q 047518 213 LDLMIQHGVRPDAFTY 228 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~ 228 (256)
+++.... .|...+|
T Consensus 476 ~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 476 YSTAFNL--RPGENTL 489 (517)
T ss_pred HHHHHhc--CCCCchH
Confidence 9888764 4444443
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=0.0001 Score=42.22 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.|++++|...++.+.... +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455555555555555442 224444445555555555555555555555543
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=0.00025 Score=40.76 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMD 183 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 183 (256)
..+|..+...+...|++++|+..|.+..+.... +...|..+..++...| ++++|+..++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445666666666666666666666666665432 5556666666666666 56666666666554
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=0.00018 Score=41.39 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG-RVNHAKELFVSMES 253 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 253 (256)
...|..+...+...|++++|+..|++..+.+ +.+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555556666666666666666655542 224445555556666666 46666666655544
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.78 E-value=0.00033 Score=59.39 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=111.9
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 87 (256)
-|..-.+..+|.+.|++..+.++. +..++......|++..+++.|..+.-..-+.. ...-..-|....-.|...++.
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccch
Confidence 344444677899999999887765 88899999999999999999999843332211 001112333355567778888
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH--HHH
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI--RGF 165 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~ 165 (256)
..++..|+...+. -+.|...|..++.+|..+|++..|.++|.+..... |+. +|...- -.-
T Consensus 579 h~aV~~fQsALR~---------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~e 640 (1238)
T KOG1127|consen 579 HGAVCEFQSALRT---------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVME 640 (1238)
T ss_pred hhHHHHHHHHhcC---------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHH
Confidence 8999988888774 24577889999999999999999999999887753 332 232222 223
Q ss_pred hccCCHHHHHHHHHHHHH
Q 047518 166 CYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~ 183 (256)
+..|.+.++...+.....
T Consensus 641 cd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 567899999998888764
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.0013 Score=48.76 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCcHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPNVVTFNVI 196 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 196 (256)
..|......+.+.|++++|...|+.+.+..+... ..++-.+...|...|++++|...|+.+.+... ......+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555566777777777777776532211 24555666777777777777777777775421 1123344445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..++...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666777777777777777664
No 192
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0013 Score=50.61 Aligned_cols=244 Identities=14% Similarity=0.058 Sum_probs=134.2
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCF 81 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (256)
+...+..+.+..++..|+..+.......|. ++..|..-+..+...+++++|.--.+.-.+.. |. ...+...-+++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCH 127 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhh
Confidence 345678889999999999999999998876 67778888888888888888887776654432 21 11333333344
Q ss_pred HhcCCcchHHHHHH---------------HHHhcCC-CCchhhHHhhhh------------------hcCCCH-HHHHHH
Q 047518 82 CKMGRVSHGFVVLG---------------RILRSCF-TPDVVTFTSLIK------------------VCKPDA-ITYNTI 126 (256)
Q Consensus 82 ~~~~~~~~a~~~~~---------------~~~~~~~-~~~~~~~~~ll~------------------~~~~~~-~~~~~l 126 (256)
...++..+|...++ .+..... .|...++..+-. ..+.|. ..+...
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY 207 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence 44444434433332 1111111 111111111100 000010 011111
Q ss_pred H--HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH-------------HHHHHhccCCHHHHHHHHHHHHHc---CCCC
Q 047518 127 I--DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS-------------VIRGFCYANDWNEAKRLFIEMMDQ---GVQP 188 (256)
Q Consensus 127 ~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------li~~~~~~~~~~~a~~~~~~~~~~---~~~~ 188 (256)
+ .++.-.++.+.|...|++....+ |+...-.. --.-..+.|++..|.+.+.+.+.. +..|
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 1 12222344455555555544432 22221111 112234668888888888887753 3456
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+...|........+.|+.++|+.--+...+.+ ..-...+..-..++...++|++|.+-+++..+
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777777788888888888777776542 11122333444556667888888888877654
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.69 E-value=0.0032 Score=42.25 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CC-CCc------------------hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 047518 130 LCKQGFVDKAKELFLKMKDK--NV-KPN------------------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~--~~-~~~------------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 188 (256)
....++.+.+...+.++... |. -|+ ..+...++..+...|++++|..+.+.+.... +.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~ 94 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PY 94 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CC
Confidence 34567788888888777653 21 111 1223445556677888888888888888774 45
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHhH
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMI-----QHGVRPDAFTY 228 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 228 (256)
|...|..++.+|...|+...|.+.|+.+. +.|+.|+..+-
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 77888888888888888888888888775 35788877654
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0024 Score=46.25 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=63.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCH
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 120 (256)
.++.++.-.|.+.-...++.+.++...+.++.....+++.-.+.|+.+.|..+|++..+..-..+..+++ .
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~---------~ 252 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK---------I 252 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh---------H
Confidence 3444444455555555555555554434444555555555555666666666665554432211111111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
.+.......|.-.+++..|...|.++...+.. +....|.-.-+....|+...|.+.++.++..
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11222233444455555555555555544322 3333333333333445666666666666554
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.67 E-value=0.0032 Score=46.68 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHhH
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTY 228 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~ 228 (256)
...|...+....+.|++++|...|+.+.+.. |+ ...+..+..+|...|++++|...|+.+.+.- .+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 4456666665566799999999999999873 33 3577788899999999999999999998641 12234566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 229 NTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+..++...|+.++|.++++++++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777888999999999999988764
No 196
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.64 E-value=0.021 Score=45.77 Aligned_cols=176 Identities=10% Similarity=0.065 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH
Q 047518 52 YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~ 131 (256)
.+.....++++...-...-..+|...|+.-.+..-++.|..+|.++.+.+..+ -++.+.++++..|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~-------------hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR-------------HHVFVAAALMEYYC 413 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc-------------chhhHHHHHHHHHh
Confidence 56667777777654333334578888988888889999999999999976554 24445677776665
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a 209 (256)
.++.+-|.++|+.-.+. ...+..-....++-+...++-..+..+|++....++.|+ ...|..++..=..-|+...+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 57889999999975544 122344446677777888999999999999998866555 57899999999999999999
Q ss_pred HHHHHHHHHC---CCCCCHHhHHHHHHHHHhcCChh
Q 047518 210 SSLLDLMIQH---GVRPDAFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 210 ~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 242 (256)
.++-+++... ...+...+-..+++-|.-.+...
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 9888776542 01222233344555555444433
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.62 E-value=8.2e-05 Score=49.88 Aligned_cols=92 Identities=9% Similarity=-0.036 Sum_probs=76.3
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.+..+...|++++|..+|.-+.-.++. +..-|..|..++...++++.|+..|...-..+. -|+..+-....++...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 344567899999999999999887775 666788899999999999999999998766553 35555666888999999
Q ss_pred CcchHHHHHHHHHhc
Q 047518 86 RVSHGFVVLGRILRS 100 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~ 100 (256)
+.+.|...|......
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999988874
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.57 E-value=0.0005 Score=39.96 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=43.5
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 66 (256)
.+.+.++++.|+++++.+...+|. +...|.....++.+.|+++.|...++...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456778888888888888887665 66677778888888888888888888887663
No 199
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.017 Score=42.80 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=92.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+......|++.+|..+|+......+. +...--.++.+|...|+.+.|..++..+...--.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 34567778888888888888776665 4556677888888888888888888877654211122222233444555555
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCchHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRG 164 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~ 164 (256)
..+...+-++.... +.|...-..+...+...|+.+.|...+-.+..+ |.. |...-..++..
T Consensus 219 ~~~~~~l~~~~aad----------------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~ 281 (304)
T COG3118 219 TPEIQDLQRRLAAD----------------PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLEL 281 (304)
T ss_pred CCCHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHH
Confidence 55555555444442 335556666777888888888888877776554 333 44555666666
Q ss_pred HhccCCHH
Q 047518 165 FCYANDWN 172 (256)
Q Consensus 165 ~~~~~~~~ 172 (256)
+.-.|..+
T Consensus 282 f~~~g~~D 289 (304)
T COG3118 282 FEAFGPAD 289 (304)
T ss_pred HHhcCCCC
Confidence 66555333
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.017 Score=42.08 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=114.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhh--CCCC----CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNS--TGLF----PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 112 (256)
|+.+.+.+.-....++-+..++.-.. +.+. .-..+.+.++.++...+.+.-....+.++++..
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~----------- 207 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY----------- 207 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-----------
Confidence 66777666555444444444432211 0000 012344566677777888888888888888752
Q ss_pred hhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH-----HHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI-----RGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 113 l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.+.++.....|++.-.+.|+.+.|...|+...+..-+.+..+.+.++ ..|.-.+++..|...+.++.... .
T Consensus 208 ---~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~ 283 (366)
T KOG2796|consen 208 ---PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-P 283 (366)
T ss_pred ---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-C
Confidence 24566777888999999999999999999887654444444444433 44566678888888888888764 2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
-|....|.=.-+..-.|+..+|.+.++.|... .|...+.+
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 34555555555666789999999999999876 45555444
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.52 E-value=0.0062 Score=39.57 Aligned_cols=98 Identities=19% Similarity=0.154 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
|..++..++.++++.|+.+....+++....-++ +... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666667777777777776666655432211 1100 0000 1112345677788888888
Q ss_pred HHHhcCChhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHH
Q 047518 199 ELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 236 (256)
+|+..|++..|.++++.+.+ .+++.+..+|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888877753 456666777777777543
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.015 Score=40.14 Aligned_cols=128 Identities=13% Similarity=0.210 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCcHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPNVVTF 193 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 193 (256)
.|++..-..|..+....|++.+|...|.+...--..-|....-.+.++....+++..|...++.+.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 466667778889999999999999999998876556677788888888889999999999999988753 2333 45
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
..+.+.+...|++.+|+..|+...+. .|+...-......+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 56778889999999999999999875 566665555555667778766655433
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.47 E-value=0.00078 Score=39.16 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=46.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..|.+.+++++|.++++.+...+ +.+...+.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778899999999999998875 346777888888889999999999999988875
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.38 E-value=0.0097 Score=38.68 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=45.4
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcC
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g 204 (256)
....|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.-+...-
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999998753 67777888888887665443
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.37 E-value=0.00098 Score=39.34 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQH----GV-RPD-AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+++.+...|...|++++|...|++..+. |- .|. ..++..+..+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554421 10 011 2345555555566666666666555543
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=97.36 E-value=0.02 Score=38.68 Aligned_cols=84 Identities=12% Similarity=-0.020 Sum_probs=39.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
..|++++|..+|+-+.-.+. -+..-|..|..++-..+++++|...|...-..+ .-|+..+.....+|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 44555555555555544321 233344444445555555555555554443322 1233334444455555555555555
Q ss_pred HHHHHH
Q 047518 247 LFVSME 252 (256)
Q Consensus 247 ~~~~m~ 252 (256)
.|...+
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 544433
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.31 E-value=0.048 Score=42.16 Aligned_cols=230 Identities=13% Similarity=0.136 Sum_probs=144.7
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcC
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMG 85 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 85 (256)
.-.-.|++++|.+-|+.|... |.... ..-|.-...+.|..+.|.++-+..-.. -|. .-.+...+...+..|
T Consensus 129 aal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcC
Confidence 334568888888888888641 22211 122223334667778777777776554 233 346778888999999
Q ss_pred CcchHHHHHHHHHhcC-CCCchhh--HHhhhh----------------------hcCCCHHHH-HHHHHHHHhcCCHHHH
Q 047518 86 RVSHGFVVLGRILRSC-FTPDVVT--FTSLIK----------------------VCKPDAITY-NTIIDGLCKQGFVDKA 139 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~-~~~~~~~--~~~ll~----------------------~~~~~~~~~-~~l~~~~~~~~~~~~a 139 (256)
+|+.|+++++.-.... +.++..- -..++. ...||...- ..-..++.+.|+..++
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh
Confidence 9999999998766532 2222111 111111 233443322 2334788999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
-.+++.+.+....|+.. . +..+.+.|+ .+..-+++..+. .++| +......+..+-...|++..|..--+...
T Consensus 283 ~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 99999999986555432 2 222334454 344444443321 1234 45667777888889999998887777666
Q ss_pred HCCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHHHH
Q 047518 218 QHGVRPDAFTYNTLLDGFC-LTGRVNHAKELFVSME 252 (256)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 252 (256)
.. .|....|..|.+.-. ..||-.++..++-+-.
T Consensus 357 r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 357 RE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 53 788888888887654 4599999988876654
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.032 Score=39.82 Aligned_cols=182 Identities=16% Similarity=0.185 Sum_probs=97.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
+-.....+.+.|++.+|...|+.+...-. +-.....-.++.++.+.|+++.|...++++++. -|+..
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~--------- 76 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSP--------- 76 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-T---------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCc---------
Confidence 34455566788889999999998876521 112345566778888889999998888888774 12110
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK---PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
...+...+.+.+......... ....... --...+..++.-|-......+|...+..+.+. .- ..-
T Consensus 77 ---~~~~A~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e 144 (203)
T PF13525_consen 77 ---KADYALYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHE 144 (203)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHH
T ss_pred ---chhhHHHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHH
Confidence 011111111111111010000 0000000 01123455555555555666666655555432 01 111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChhHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDA----FTYNTLLDGFCLTGRVNHAK 245 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~ 245 (256)
-.+...|.+.|.+..|..-++.+.+. -|+. .....++.+|.+.|..+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 23567788999999999999998875 2332 35567788888888887544
No 209
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.26 E-value=0.04 Score=40.09 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=30.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCC-CCcccHHHHHHHHHccCChHHHHHHHHHHhhC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 65 (256)
|...++.|++++|.+.|+.+....|.. -...+.-.++-++.+.++++.|+..+++..+.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 334455566666666666665544431 12223344445555566666666666555443
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.23 E-value=0.062 Score=41.79 Aligned_cols=171 Identities=13% Similarity=0.067 Sum_probs=110.8
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK---QGFVDKAKELFLKMK 147 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 147 (256)
..+...++-+|....+++..+++++.+... |+.. +..+..+-....-++.+ .|+.++|+.++..+.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~---p~~~--------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL---PTCD--------VANQHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc---Cccc--------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 344456666799999999999999998874 1111 01122333345566777 899999999999976
Q ss_pred hCCCCCchHHHHHHHHHHh---------ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh----HHHHHH-
Q 047518 148 DKNVKPNVVTYTSVIRGFC---------YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD----EASSLL- 213 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~----~a~~~~- 213 (256)
.....++..+|..+.+.|- .....++|...|.+..+. .||...--.++..+...|... +..++-
T Consensus 210 ~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 210 ESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred hccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 6666778889988877652 123477888888887765 355444333333344444322 222222
Q ss_pred --HHH-HHCC---CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 214 --DLM-IQHG---VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 214 --~~~-~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+ .+.| -..+-..+..++.++.-.|+.++|.+..++|.+.
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 221 1233 2345566778889999999999999999998753
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.23 E-value=0.002 Score=49.71 Aligned_cols=248 Identities=11% Similarity=0.053 Sum_probs=136.9
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHH----hhCCCCC-CHhh
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRL----NSTGLFP-DLYT 73 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~-~~~~ 73 (256)
|...|.++++.|+......+|+...+.|.. |. .+|..|..+|.-.+++++|+++...= +..|-+. ....
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 345678899999999999999999998765 43 34667777888888899998865421 1111000 0111
Q ss_pred HHHHHHHHHhcCCcchHHHHH-----------HHHHhc-----------------CCC-C------chhhHHhhhh----
Q 047518 74 HSILINCFCKMGRVSHGFVVL-----------GRILRS-----------------CFT-P------DVVTFTSLIK---- 114 (256)
Q Consensus 74 ~~~l~~~~~~~~~~~~a~~~~-----------~~~~~~-----------------~~~-~------~~~~~~~ll~---- 114 (256)
...|...+--.|.+++|+-.- +++.+. |.. | +..+-..+-.
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 222333333334444443221 111110 000 0 0000000000
Q ss_pred ------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCC-CchHHHHHHHHHHhccCCHHHHHHH
Q 047518 115 ------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKM----KDKNVK-PNVVTYTSVIRGFCYANDWNEAKRL 177 (256)
Q Consensus 115 ------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 177 (256)
.-......|..|.+.|.-.|+++.|+...+.- .+-|-+ .....+..+-.++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 00011223444455555567777777655432 122211 1334667777788888888888888
Q ss_pred HHHHHH----cC-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CC-CCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 178 FIEMMD----QG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HG-VRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 178 ~~~~~~----~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
|+.... .| -.........|...|.-..++++|+..+.+-.. .+ ..-....+.+|..+|...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 877542 22 122344556677777777788888887765432 11 122445777888888888888888877
Q ss_pred HHHHH
Q 047518 248 FVSME 252 (256)
Q Consensus 248 ~~~m~ 252 (256)
.+.-+
T Consensus 338 ae~hl 342 (639)
T KOG1130|consen 338 AELHL 342 (639)
T ss_pred HHHHH
Confidence 65543
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.22 E-value=0.0019 Score=38.07 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-Cc-hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK-PN-VVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
.+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667777777777777777665432 111 11 3455566666666666666666666554
No 213
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.042 Score=39.68 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHHHHh---CCC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCc-HHHHHHHHHHHH
Q 047518 132 KQGFVDKAKELFLKMKD---KNV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD----QGVQPN-VVTFNVIMDELC 201 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~ 201 (256)
...++++|+++|.+... .+- ..-...+...-+.+.+...+++|-..+.+-.. ..-.++ -..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 34556666666665432 110 11123344455556666666666555444321 111122 234555556666
Q ss_pred hcCChhHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 202 KNGKMDEASSLLDLMIQ---HGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
...++..|.+.++.--. ..-.-+..+...|+.+| ..|+.+++.+++
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77788888888877332 22233556777777776 457777766654
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.17 E-value=0.036 Score=43.82 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV--VTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+.+...|+.+..+|.+.|++++|+..|++..+....... .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999999998887533111 45899999999999999999999999885
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.06 E-value=0.12 Score=42.04 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=105.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCC
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC----KQGFVDKAKELFLKMKDKNVK 152 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~ 152 (256)
++....-.|+-+.+++.+.+..+.+-...+..--.+ -.|...+..+. .....+.|.+++..+.+. -
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~L--------L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y 263 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVL--------LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y 263 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHH--------HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C
Confidence 444444567778888887776664322222221111 13444443333 356788999999999987 4
Q ss_pred CchHHHHHH-HHHHhccCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 153 PNVVTYTSV-IRGFCYANDWNEAKRLFIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 153 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
|+...|... .+.+...|+.++|.+.++...... .......+--+..++.-.++|++|...|..+.+.. .-+...|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence 566555433 345678899999999999766321 12234455566777888999999999999998753 2234444
Q ss_pred HHHHH-HHHhcCCh-------hHHHHHHHHHHh
Q 047518 229 NTLLD-GFCLTGRV-------NHAKELFVSMES 253 (256)
Q Consensus 229 ~~l~~-~~~~~g~~-------~~a~~~~~~m~~ 253 (256)
.-+.. ++...|+. ++|.+++++...
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44433 44567777 888888877653
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.05 E-value=0.11 Score=41.50 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=35.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+..++-+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555555667777777777666643211 2334556666666677777777666666543
No 217
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.04 E-value=0.035 Score=44.54 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=20.0
Q ss_pred HHHccCChHHHHHHHH--HHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHH
Q 047518 45 CLAKNKHYDTVLSLFK--RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94 (256)
Q Consensus 45 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 94 (256)
...-.++++.+.++.+ .+.. . .| ....+.++..+-+.|..+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~-i~-~~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-N-IP-KDQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHS
T ss_pred HHHHcCChhhhhhhhhhhhhcc-c-CC-hhHHHHHHHHHHHCCCHHHHHhhc
Confidence 3444566666655554 1111 1 11 334566666666666666666554
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.037 Score=42.80 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=92.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCC---------CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHH
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDK-----NVK---------PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 192 (256)
.+.|.+.|++..|..-|++.... +.. .-..++..+.-+|.+.+++..|+......+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45788999999999999886532 111 123557788888999999999999999999886 557777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF-TYNTLLDGFCLTGRVNH-AKELFVSMES 253 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 253 (256)
.-.=..+|...|+++.|...|+.+.+. .|+-. .-..++.+-.+.....+ ..++|..|-.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777788999999999999999999985 45444 44555555445444443 4677777754
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.011 Score=45.58 Aligned_cols=97 Identities=9% Similarity=0.014 Sum_probs=73.7
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCC----C---------CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPS----P---------PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP 69 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~----~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 69 (256)
.+..|+.+.+.|++..|...|++....-.. + .-..+++.+..++.+.+++..|+...+..+..+ ++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~ 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PN 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CC
Confidence 356788999999999999999986543211 0 112456677888888888888888888888775 45
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
|.....--..++...|+++.|...|+++++.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 6677777788888888888888888888874
No 220
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.065 Score=37.08 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=99.9
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
-|+...-..|..+..+.|+..+|...|++...-- +..|....-.+.++....+++..|...++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~--------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI--------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc--------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 5777777788999999999999999999988742 23466667778889999999999999999987
Q ss_pred hCC---CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 148 DKN---VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 148 ~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
+.. -.||. --.+.+.+...|.+.+|+..|+..... .|+...-......+.+.|+.+++..-+..+.
T Consensus 152 e~~pa~r~pd~--~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 152 EYNPAFRSPDG--HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hcCCccCCCCc--hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 653 33444 355778889999999999999999987 4444444444455677887776655544443
No 221
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.94 E-value=0.013 Score=37.81 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=75.9
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTHSILINCFC 82 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 82 (256)
.|.+....|+.+.|++.|.+.+..-|. ....||.-..++.-.|+.++|++-+++..+..-..+. ..|..-...|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 455667889999999999999887765 6778999999999999999999999998776433233 34444555677
Q ss_pred hcCCcchHHHHHHHHHhcCC
Q 047518 83 KMGRVSHGFVVLGRILRSCF 102 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~ 102 (256)
..|+.+.|..-|+...+.|.
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 88999999999999888764
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.91 E-value=0.051 Score=35.22 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
..+...+......|.-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555666666677777777776666432 55666666677777777777777777777766664
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.84 E-value=0.046 Score=43.28 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+...++.+..+|...|++++|+..+++.++. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999987 4553 46999999999999999999999999875
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.77 E-value=0.16 Score=38.95 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
+.-+...|+...|.++-.+.. + |+..-|-..+.+++..++|++-..+... . -++.-|..++.+|.+.|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCH
Confidence 334444555555555544442 1 3555555666666666666555544321 1 1224555566666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
.+|..++..+ + +..-+..|.+.|++.+|.+.
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 6655555441 1 13334444555555555443
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.76 E-value=0.027 Score=41.57 Aligned_cols=89 Identities=15% Similarity=0.180 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc----------------CCHHHHHH
Q 047518 118 PDAITYNTIIDGLCK-----QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA----------------NDWNEAKR 176 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~~ 176 (256)
.|..+|...+..|.. .+.++-....++.|.+-|+.-|..+|+.|+..+-+- .+-.-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 455566666665543 466777788888999999999999999999775332 23345788
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
++++|...|+.||..+-..++.++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 899999999999999999999998887753
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.14 Score=37.72 Aligned_cols=97 Identities=22% Similarity=0.276 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-cHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-P-NVVTFNVIM 197 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll 197 (256)
.|+.-+. +.+.|++..|...|....+..+. -....+-.|..++...|+++.|..+|..+.+.-.. | -...+-.+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555443 34455577777777776665321 12334455667777777777777777776654111 1 134555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047518 198 DELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6667777777777777777664
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.67 E-value=0.0054 Score=40.39 Aligned_cols=79 Identities=8% Similarity=0.002 Sum_probs=57.1
Q ss_pred ccCCCCCCCcCChhhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 4 KSSGEGDITTITPNEALCIFDYMLRMHPSPP-PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 4 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
.+.|...++.|++++|.+.|+.+....|..+ ...+--.++.+|.+.++++.|...+++.++....-...-|...+.+++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3456667889999999999999998776522 234566788999999999999999999988753322233444444443
No 228
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.1 Score=43.18 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---------
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF--------- 226 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------- 226 (256)
.+...+..-+-+...+.-|.++|..|-+. ..++......++|.+|..+-+...+. .|++.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 33444444444555666666666665432 24566677888899888888776653 33332
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 227 --TYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 227 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
-|...-.+|.++|+-.+|.++++++..+
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344456788888888998888887654
No 229
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.61 E-value=0.22 Score=38.29 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (256)
.+.+..|.-+...|+...|.++-.+. -.|+...|-.-+.+++..++|++-.++-.. .-++.-|...+.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34455556666677777766665444 246777777778888888888776665432 12345677777777
Q ss_pred HhcCChhHHHHHHHHH
Q 047518 236 CLTGRVNHAKELFVSM 251 (256)
Q Consensus 236 ~~~g~~~~a~~~~~~m 251 (256)
.+.|...+|..++.++
T Consensus 248 ~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI 263 (319)
T ss_pred HHCCCHHHHHHHHHhC
Confidence 7788877777776653
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.60 E-value=0.1 Score=34.48 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=54.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (256)
-.....+.|++++|.+.|+.+..+-+ +-...+--.++.+|.+.+++++|...+++.++.+..-...-|...+.+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34556788999999999999987632 12345567788899999999999999999998754433344544455444
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.55 E-value=0.1 Score=33.86 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=75.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-C----------------CCCcHHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-G----------------VQPNVVT 192 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~----------------~~~~~~~ 192 (256)
..-.|..++..++..+..... +..-+|.+|.-....-+-+-..++++.+-+. . ...+...
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 345678888888888776542 3333444443332223333333333332210 0 1224556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
+...+.++...|+-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++-+++++.-++|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 6778889999999999999999988643 78888899999999999999999999999999885
No 232
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.52 E-value=0.046 Score=40.39 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----------------ChhHHHHH
Q 047518 154 NVVTYTSVIRGFC-----YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG----------------KMDEASSL 212 (256)
Q Consensus 154 ~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------------~~~~a~~~ 212 (256)
|..+|-..+..+. +.+..+-....++.|.+.|+.-|..+|+.|+..+-+-. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 5666666666653 33567777778889999999999999999998765433 23457899
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
+++|...|+-||..+-..|+.++.+.+-.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 99999999999999999999999877654
No 233
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.29 Score=38.36 Aligned_cols=177 Identities=15% Similarity=0.045 Sum_probs=118.5
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhh-------------HH
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-------------HS 75 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~ 75 (256)
-+.-.|++++|.+.--..++.... +......-..++...++.+.|...|++..+.+ |+... +.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDAT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 345567888888888888776654 44444444445667788899999999888764 44322 22
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 047518 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155 (256)
Q Consensus 76 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (256)
.-..-..+.|.+..|.+.|.+.+. +.|+. ..++...|.....+..+.|+..+|+.--+........ -.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~--idP~n---------~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yi 321 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALN--IDPSN---------KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YI 321 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhc--CCccc---------cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HH
Confidence 223334567899999999988876 35552 3567778888888999999999999988888765321 22
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELC 201 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~ 201 (256)
..|..-..++...++|++|.+-++...+....+ ...++.....++-
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 344555566777889999999998887653222 2334444433433
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.50 E-value=0.25 Score=41.41 Aligned_cols=182 Identities=18% Similarity=0.119 Sum_probs=106.4
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
|++++|.++|-.+-+ -..-+..+.+.|+|-++.++++.--... -.--...|+.+...+.....|++|.+
T Consensus 748 g~feeaek~yld~dr----------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADR----------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccch----------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777665533 1235666777788877776664421110 00113477888888888888888888
Q ss_pred HHHHHHhcCCCCc-------hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 93 VLGRILRSCFTPD-------VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 93 ~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
+|..-....-..+ -.-...+....+.+....-.+..++.+.|.-++|...|-+-.. | ...+.+|
T Consensus 818 yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tC 888 (1189)
T KOG2041|consen 818 YYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTC 888 (1189)
T ss_pred HHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHH
Confidence 7765432100000 0011112224456666777788888888888888877754322 1 2345677
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHH--------------HHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVT--------------FNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
...++|.+|.++-++..- |...+ ....|..+.++|++-.|.+++.+|.+
T Consensus 889 v~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 888888888877665421 11111 12234556677888788888887764
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.044 Score=40.20 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=73.9
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCC-CC-CHhhHHHHHHHHHhc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FP-DLYTHSILINCFCKM 84 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~ 84 (256)
..+++.|++..|.+.|....+..|. +-....+-=|..++...|++++|..+|..+.+.-. .| -+..+--+..+..+.
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 3457789999999999999998775 12233455688999999999999999999977521 12 235777788888999
Q ss_pred CCcchHHHHHHHHHhc
Q 047518 85 GRVSHGFVVLGRILRS 100 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~ 100 (256)
|+.++|-.+|+++.+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999999986
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.45 E-value=0.3 Score=39.42 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=96.8
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
-+++++++.++.+.-.- -|. -+..-.+.++..+.+.|.++.|+++.++- . .-.....+.|+++.|.
T Consensus 273 ~~~d~~~v~~~i~~~~l-l~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNL-LPN-IPKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HTT-HHH-----HHHHT-GGG---HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHHH
T ss_pred HcCChhhhhhhhhhhhh-ccc-CChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHHH
Confidence 45667776666542111 111 22445888999999999999999876432 1 1344556778888887
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 171 (256)
++.++ ..+...|..|.+...+.|+++-|+..|.+..+ |..++-.|...|+.
T Consensus 339 ~~a~~--------------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 339 EIAKE--------------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDR 389 (443)
T ss_dssp HHCCC--------------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred HHHHh--------------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence 65422 23566888999999999999999999987653 45666777788888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
+...++.+.....| . ++....++.-.|+.++..+++.+-
T Consensus 390 ~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887777765 2 333444455567888777776543
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.40 E-value=0.15 Score=33.92 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
..++..+...+.+.....+++.+...+. .+....+.++..|++.+ ..+....++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4567777777888888998888887764 57778888888887653 3444444442 12333445566667777
Q ss_pred CChhHHHHHHHHH
Q 047518 204 GKMDEASSLLDLM 216 (256)
Q Consensus 204 g~~~~a~~~~~~~ 216 (256)
+.++++.-++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 7776666666654
No 238
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.35 E-value=0.021 Score=29.27 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
++..+..+|...|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666653
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.21 E-value=0.43 Score=37.34 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=100.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHh---cCCcchHHHHHHHHHhcCCCCchhhHHh
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTHSILINCFCK---MGRVSHGFVVLGRILRSCFTPDVVTFTS 111 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (256)
+...++-+|....+++..+++++.+.... +..+..+-....-++.+ .|+.++|+.++..++...-.+++.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d---- 218 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD---- 218 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH----
Confidence 34455667999999999999999998752 11122233344556667 899999999999966654444433
Q ss_pred hhhhcCCCHHHHHHHHHHHH----h-----cCCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHhccC-CHHHHHHHH
Q 047518 112 LIKVCKPDAITYNTIIDGLC----K-----QGFVDKAKELFLKMKDKNVKPNVV---TYTSVIRGFCYAN-DWNEAKRLF 178 (256)
Q Consensus 112 ll~~~~~~~~~~~~l~~~~~----~-----~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~-~~~~a~~~~ 178 (256)
+|..+...|- . ...+++|+..|.+.-+.. |+.. -+..++....... .-.+..++-
T Consensus 219 ----------~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~ 286 (374)
T PF13281_consen 219 ----------TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIG 286 (374)
T ss_pred ----------HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHH
Confidence 4444443332 1 234778888888766543 3322 1222333322211 111222222
Q ss_pred ---HHH-HHcC---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 179 ---IEM-MDQG---VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 179 ---~~~-~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..+ .+.| -..+-..+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 287 ~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 287 VKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 221 1232 2345666788999999999999999999999976
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=0.24 Score=41.55 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=39.5
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CCCCC--------HhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPD--------LYTHSILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
|-+..|..+.......-.++.|+..|-+.... |++.- ...-..=+.+ --|++++|+++|-++-++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh
Confidence 56678999998888888888888888665432 22211 0111111112 247788888888776554
No 241
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.04 E-value=0.23 Score=33.58 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=47.0
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
++.++.+++..+++.+.-..|..+...++...+ +...|+|.+|.++|+.+.+.+ |....-..|+..|..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 456788889999998887777655555555444 467889999999999987663 344444445544443
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.04 E-value=0.038 Score=28.33 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
++..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455556666666666666666666654
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.97 E-value=0.0076 Score=29.01 Aligned_cols=32 Identities=9% Similarity=0.402 Sum_probs=23.5
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHccCChHHHH
Q 047518 23 FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVL 56 (256)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 56 (256)
|++.++..|. +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 4566666654 7777888888888888888775
No 244
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.95 E-value=0.21 Score=37.28 Aligned_cols=78 Identities=12% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCcHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-----QGVQPNVVTFNV 195 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 195 (256)
.++..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34556666777777777777777777666433 666677777777777777777777776654 366666655555
Q ss_pred HHHH
Q 047518 196 IMDE 199 (256)
Q Consensus 196 ll~~ 199 (256)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.4 Score=41.01 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=65.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
..-+..+.+..-++.|+.+.+.- +..++. ........-+.+.|++++|...|-+-... ++|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s------------ 401 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS------------ 401 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH------------
Confidence 34455555666666666655432 222221 23333344455678888888777665542 1111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 181 (256)
-++.-|........-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+..
T Consensus 402 -------~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 402 -------EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred -------HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 1344455555566666666777776665 4444566777777777766655554443
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.89 E-value=0.52 Score=35.55 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=125.7
Q ss_pred CCCcCChhhHHHHHHHHHHhC-CCCCCc------ccHHHHHHHHHccC-ChHHHHHHHHHHhhC--------CCCCCH--
Q 047518 10 DITTITPNEALCIFDYMLRMH-PSPPPV------SSFNIMLGCLAKNK-HYDTVLSLFKRLNST--------GLFPDL-- 71 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~-- 71 (256)
..+.|+++.|..++.+..... ..+|+. ..|+. .......+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 357899999999999987755 322332 12333 33334455 888887777765332 122332
Q ss_pred ---hhHHHHHHHHHhcCCcch---HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047518 72 ---YTHSILINCFCKMGRVSH---GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145 (256)
Q Consensus 72 ---~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (256)
.++..++.+|...+..+. |..+++.+.... +..+.++..-+..+.+.++.+++.+++..
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---------------~~~~~~~~L~l~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY---------------GNKPEVFLLKLEILLKSFDEEEYEEILMR 146 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---------------CCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence 467778888888776654 445555554331 11233444456677778999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHh--ccCCHHHHHHHHHHHHHcCCCCcHH-HHHHH----HHHHHhcCC------hhHHHHH
Q 047518 146 MKDKNVKPNVVTYTSVIRGFC--YANDWNEAKRLFIEMMDQGVQPNVV-TFNVI----MDELCKNGK------MDEASSL 212 (256)
Q Consensus 146 ~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l----l~~~~~~g~------~~~a~~~ 212 (256)
|...-. .....+..++..+. .......+...+..+....+.|... ....+ +....+.++ .+....+
T Consensus 147 mi~~~~-~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~ 225 (278)
T PF08631_consen 147 MIRSVD-HSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEEL 225 (278)
T ss_pred HHHhcc-cccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHH
Confidence 987622 13344555555442 2234456777777776554555443 11111 111222222 4444455
Q ss_pred HHHHHH-CCCCCCHHhHHHHH-------HHHHhcCChhHHHHHHHHH
Q 047518 213 LDLMIQ-HGVRPDAFTYNTLL-------DGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 213 ~~~~~~-~~~~~~~~~~~~l~-------~~~~~~g~~~~a~~~~~~m 251 (256)
++.+.+ .+.+.+..+-.++. ..+.+.+++++|.++++--
T Consensus 226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 554332 23334444433322 3355789999999998743
No 247
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.89 E-value=0.28 Score=34.18 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCcHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---GVQPNVVTFNV 195 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 195 (256)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+.... +-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3577889999999999999999999988754443 345677888888999999999998887643 22222222111
Q ss_pred HH--HHHHhcCChhHHHHHHHHHH
Q 047518 196 IM--DELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 196 ll--~~~~~~g~~~~a~~~~~~~~ 217 (256)
.. -.+...+++..|.+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 22346789999998887664
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.6 Score=35.73 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=89.7
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK---NVKPNVVTYTS 160 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 160 (256)
.|++.+|-..++++++ ..+.|..++.-.=.+|...|+.+.-...++++... +++-....-..
T Consensus 116 ~g~~h~a~~~wdklL~---------------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gm 180 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD---------------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGM 180 (491)
T ss_pred cccccHHHHHHHHHHH---------------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHH
Confidence 4455555555555554 34555666666667777788888777777777654 22222222233
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHhHHHHHHHHHh
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH---GVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 237 (256)
..-++...|-+++|++.-++..+.+ +.|.-.-.+....+.-.|++.++.++..+-... +.-.-...|-...-.+..
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 3344566788888888888777664 456666667777777788888887776654321 111111223333444555
Q ss_pred cCChhHHHHHHHH
Q 047518 238 TGRVNHAKELFVS 250 (256)
Q Consensus 238 ~g~~~~a~~~~~~ 250 (256)
.+.++.|+++|++
T Consensus 260 ~aeye~aleIyD~ 272 (491)
T KOG2610|consen 260 GAEYEKALEIYDR 272 (491)
T ss_pred ccchhHHHHHHHH
Confidence 6777777777654
No 249
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.82 E-value=0.02 Score=43.36 Aligned_cols=94 Identities=11% Similarity=-0.032 Sum_probs=69.7
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
+...|+.|++.|.+++|++.|.......|. |.+++..-..+|.+.+++..|+.-.+.....+ ..-...|..-+.+--
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 356789999999999999999998776654 88889999999999999998888777766542 112234555555555
Q ss_pred hcCCcchHHHHHHHHHh
Q 047518 83 KMGRVSHGFVVLGRILR 99 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~ 99 (256)
..|...+|.+-++.++.
T Consensus 177 ~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLA 193 (536)
T ss_pred HHhhHHHHHHhHHHHHh
Confidence 56677777777766665
No 250
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.77 E-value=0.15 Score=31.02 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555566666666666666666666666666666555
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.70 E-value=0.3 Score=36.51 Aligned_cols=79 Identities=9% Similarity=0.097 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHhHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-----HGVRPDAFTYNT 230 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 230 (256)
.++..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456677788888899999999999999875 56889999999999999999999999998865 688898888777
Q ss_pred HHHHH
Q 047518 231 LLDGF 235 (256)
Q Consensus 231 l~~~~ 235 (256)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 76663
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.66 E-value=0.97 Score=36.97 Aligned_cols=163 Identities=13% Similarity=0.184 Sum_probs=108.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCC-CCCC-----HhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCchhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPD-----LYTHSILINCFCK----MGRVSHGFVVLGRILRSCFTPDVVT 108 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 108 (256)
+..+++...=.|+-+.+++.+....+.+ +.-. .-+|+..+..+.. ....+.|.++++.+.++
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-------- 262 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-------- 262 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------
Confidence 5667777778899999999998876643 2211 1234444444443 34556788888888775
Q ss_pred HHhhhhhcCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 109 FTSLIKVCKPDAITYNTI-IDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 109 ~~~ll~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
-|+...|... ...+...|++++|+..|+...... .+.....+--+.-.+....+|++|...+..+.+.
T Consensus 263 --------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 263 --------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred --------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 2444444433 467788999999999999765321 1123334444556677889999999999999986
Q ss_pred CCCCcHHHHHHHHHHH-HhcCCh-------hHHHHHHHHHHH
Q 047518 185 GVQPNVVTFNVIMDEL-CKNGKM-------DEASSLLDLMIQ 218 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 218 (256)
. ..+..+|..+..+| ...|+. ++|.++|.+...
T Consensus 335 s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 335 S-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred c-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4 44555665554443 467777 888888887653
No 253
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.092 Score=36.81 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=74.7
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCC---cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPP---VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 78 (256)
+|...|+.++.+|++++|..-|...+...|..+. ...|..-..++.+.+.++.|+.-....++.+. ........-.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRA 175 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRA 175 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHH
Confidence 5677789999999999999999999987665222 12355556678889999999999988887752 1223334445
Q ss_pred HHHHhcCCcchHHHHHHHHHhc
Q 047518 79 NCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
.+|.+...++.|+.-|.++.+.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 6788889999999999999885
No 254
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=1.2 Score=37.80 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=34.0
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCC----CCHhhHHHHHHHHHhcCCcchHHHHHHHH
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF----PDLYTHSILINCFCKMGRVSHGFVVLGRI 97 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 97 (256)
+..+|..+.......|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhl 572 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHL 572 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHH
Confidence 4457777888778888888888877643322210 11122333444444555555444444333
No 255
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.60 E-value=0.91 Score=36.23 Aligned_cols=150 Identities=13% Similarity=0.047 Sum_probs=92.4
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHh
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPP----VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC--FCK 83 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 83 (256)
.-+++++++|..+|.++.+.....|. ...-+.++++|... +.+.....+..+.+. .| ...|-.+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45688999999999998775443122 12235677777654 556555555555544 22 2334444443 357
Q ss_pred cCCcchHHHHHHHHHhc--CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCchHH
Q 047518 84 MGRVSHGFVVLGRILRS--CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN----VKPNVVT 157 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 157 (256)
.+.+.+|.+.+...... +..+.. .+.-+...-+|-..=++.+..+...|.+.++..++++|...= ..-+..+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~--Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPW--LDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccch--hhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 78899999988777665 333221 111111222333344667788899999999999999887543 3367788
Q ss_pred HHHHHHHH
Q 047518 158 YTSVIRGF 165 (256)
Q Consensus 158 ~~~li~~~ 165 (256)
|+.++-.+
T Consensus 170 yd~~vlml 177 (549)
T PF07079_consen 170 YDRAVLML 177 (549)
T ss_pred HHHHHHHH
Confidence 88755443
No 256
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.55 E-value=0.04 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
+..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566666666666666666666
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.53 E-value=0.57 Score=33.41 Aligned_cols=222 Identities=17% Similarity=0.089 Sum_probs=149.8
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
+....+...+.......+.......+......+...+.+..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444555555555543332112456777888888888899888888887652 223455667777777778888888888
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHhccC
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID-GLCKQGFVDKAKELFLKMKDKNV--KPNVVTYTSVIRGFCYAN 169 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~ 169 (256)
.+.........+ ......... .+...|+++.|...+........ ......+......+...+
T Consensus 117 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 117 LLEKALALDPDP---------------DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHcCCCCc---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 888887743222 111222223 78899999999999999855322 123344444444566788
Q ss_pred CHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
+.+.+...+....... .. ....+..+...+...++++.+...+...... .|+ ...+..+...+...+..+++...
T Consensus 182 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (291)
T COG0457 182 RYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEA 258 (291)
T ss_pred CHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHH
Confidence 9999999999998763 23 4677888888888899999999999988875 333 44555555555567778888887
Q ss_pred HHHHHh
Q 047518 248 FVSMES 253 (256)
Q Consensus 248 ~~~m~~ 253 (256)
+.+..+
T Consensus 259 ~~~~~~ 264 (291)
T COG0457 259 LEKALE 264 (291)
T ss_pred HHHHHH
Confidence 776654
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.49 E-value=0.44 Score=42.34 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=66.5
Q ss_pred CCCHhhH----HHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 68 FPDLYTH----SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 68 ~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
.|+...+ .+....+.+...+++|.-.|+..-+. ...+.+|..+|+|.+|..+.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----------------------ekAl~a~~~~~dWr~~l~~a 988 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-----------------------EKALKAYKECGDWREALSLA 988 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-----------------------HHHHHHHHHhccHHHHHHHH
Confidence 4555444 34444455667777777777665442 23467788888888888887
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (256)
.++.....+ -..+-..|+.-+...++.-+|-++..+.... | .-.+..+++...|++|.++-.
T Consensus 989 ~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 989 AQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHH
Confidence 776532111 1112245667777788888888887776543 1 112233444455555555443
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.44 E-value=0.052 Score=26.39 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
|..|...|.+.|++++|+.+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666653
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.43 E-value=0.45 Score=31.59 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=85.1
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
.....++..+.+.+.+..+..+++.+...+ ..+...++.++..|++.+. .+....+.. .
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---------------- 66 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---------------- 66 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c----------------
Confidence 345678888888888999999999988876 3677788999999887543 333444432 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
.+......++..|.+.+.++++.-++..+.. .......++. ..++.+.|.+++.+. .+...|..+
T Consensus 67 -~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~---~~~d~~~a~~~~~~~------~~~~lw~~~ 131 (140)
T smart00299 67 -SNHYDIEKVGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIE---HLGNYEKAIEYFVKQ------NNPELWAEV 131 (140)
T ss_pred -cccCCHHHHHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHH---cccCHHHHHHHHHhC------CCHHHHHHH
Confidence 1111223467778888888888888877643 2223333332 227888888877752 255678888
Q ss_pred HHHHHh
Q 047518 197 MDELCK 202 (256)
Q Consensus 197 l~~~~~ 202 (256)
+..+..
T Consensus 132 ~~~~l~ 137 (140)
T smart00299 132 LKALLD 137 (140)
T ss_pred HHHHHc
Confidence 777654
No 261
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.40 E-value=0.13 Score=31.69 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555554
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.57 Score=35.84 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=91.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhcCC
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKNGK 205 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~ 205 (256)
..-.|...+|-..++++.+.- +-|..++...=++|...|+...-...++++... ..||. ..-..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678888888888888763 447778888888999999999999999998865 12333 333445556679999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
+++|++.-++..+.+ +.|.....++...+...|+..++.++..+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 999999999988764 55677778888888899999999988765
No 263
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.28 E-value=1.2 Score=35.64 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=87.0
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
+|-..+....+..-.+.|..+|-++.+.| +.+++.+++.++..++ .|+...|..+|+--... .|
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~------------ 463 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FP------------ 463 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CC------------
Confidence 45566666667777778888888887777 4566777777776554 46677777777655443 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
.++.--+..+..+..-++-+.|..+|+....+ +..+ ...|..+|.-=..-|+...+..+=+.+... .|...+..
T Consensus 464 -d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~e 539 (660)
T COG5107 464 -DSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIE 539 (660)
T ss_pred -CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHH
Confidence 12222344566667777777788887744332 1112 345777776666777777777666666653 34443444
Q ss_pred HHHHHH
Q 047518 195 VIMDEL 200 (256)
Q Consensus 195 ~ll~~~ 200 (256)
.+.+-|
T Consensus 540 vF~Sry 545 (660)
T COG5107 540 VFTSRY 545 (660)
T ss_pred HHHHHH
Confidence 444333
No 264
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.43 Score=36.08 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=55.9
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
|.+....+...++..-....+++.+...+-.+.... ..|+. +-..+++. +..-++++++.++..=...|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 344455555555555555566666666666555321 11111 11112222 22335556666666666667777777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+++.+++.+.+.+++.+|..+.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777666555543
No 265
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.74 Score=34.87 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK---NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
..+.+...++..-....+++.++..+-+++.. ...|+... ...++.+.+ =++++++.++..-+..|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhHH
Confidence 33344444555555567777777777776543 12222222 223333322 36668888888888888889999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+++.+.+.+++.+|.++.-.|..+
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999988888887776654
No 266
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.13 E-value=1.7 Score=36.51 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----------
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV---------- 190 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------- 190 (256)
.+...+...+.+...+..|-++|..|-+. ..+++.+...++|++|..+-+...+. .||.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 34444444455566667777777766432 45677888999999999998876653 3332
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 191 -VTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 191 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.-|...-.+|-++|+..+|.++++++-..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22344556788889999999998887654
No 267
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.12 E-value=1.1 Score=34.19 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc--cC----ChHHHHHHHHHHhhCCCC---CCHhhHHHHHHHHHhcCC
Q 047518 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK--NK----HYDTVLSLFKRLNSTGLF---PDLYTHSILINCFCKMGR 86 (256)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 86 (256)
+++.+.+++.+.+.|.. .+..+|-+....... .. ...+|..+|+.|++...- ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk-~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFK-RSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccC-ccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 44556677777777665 444444332222211 22 245778888888776422 333444444432 2222
Q ss_pred c----chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 87 V----SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF--VDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 87 ~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
. +.++.+|+.+.+.|+..+.. ....+.++........ ...+..+++.+.+.|+++....|..
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~------------LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGND------------LQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcH------------HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 2 34556666666666654322 1222333332222222 3366677777777777766665554
Q ss_pred H
Q 047518 161 V 161 (256)
Q Consensus 161 l 161 (256)
+
T Consensus 223 l 223 (297)
T PF13170_consen 223 L 223 (297)
T ss_pred H
Confidence 3
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=94.89 E-value=1.6 Score=35.06 Aligned_cols=64 Identities=13% Similarity=-0.042 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
|+.....+..+....++++.|...|++....++. ...+|......+...|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444444444444445555555555555444321 222222222233334555555555555444
No 269
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.89 E-value=1.5 Score=34.50 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=117.5
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHH--HHccCChHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCC
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGC--LAKNKHYDTVLSLFKRLNSTGLFPDLY--THSILINCFCKMGR 86 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 86 (256)
.-.|+-..|.++-.+..+.-. .|......++.+ ..-.|+++.|.+-|+.|... |... -...|.-..-+.|.
T Consensus 95 agAGda~lARkmt~~~~~lls--sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 95 AGAGDASLARKMTARASKLLS--SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hccCchHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhccc
Confidence 345677777777766544322 355555555543 34569999999999999863 2221 22233333446788
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchH--HHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVV--TYTSVIR 163 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~li~ 163 (256)
.+.|.++-+...... +.-.-.+...+...+..|+|+.|+++.+.-+... +.++.. .-..|+.
T Consensus 170 reaAr~yAe~Aa~~A---------------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 170 REAARHYAERAAEKA---------------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHHHHHHHHhhc---------------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 888888877776531 2234467788999999999999999998766542 233321 1122222
Q ss_pred HH---hccCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 164 GF---CYANDWNEAKRLFIEMMDQGVQPNVV-TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 164 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
+- .-..+...|...-.+..+. .||.. .-.....++.+.|+..++..+++.+-+. .|.+..+.
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~ 300 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIAL 300 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHH
Confidence 21 1123455566655555543 44432 2334456778888888888888888876 34444333
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.84 E-value=0.87 Score=31.72 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHhHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQ---HGVRPDAFTYNT 230 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~ 230 (256)
..+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.++......+++..+...+.+... .|..++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5678889999999999999999999987644443 34567788888999999999999887764 222222221111
Q ss_pred HHH--HHHhcCChhHHHHHHHH
Q 047518 231 LLD--GFCLTGRVNHAKELFVS 250 (256)
Q Consensus 231 l~~--~~~~~g~~~~a~~~~~~ 250 (256)
... .+...+++.+|-+.|-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHc
Confidence 222 23456888888877643
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.76 E-value=1.8 Score=35.07 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
..+-..+..++-+.|+.++|.+.+++|.+.. ..........|+.++...+.+.++..++.+-.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444567778889999999999999998642 12244578889999999999999999988754
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.59 E-value=0.97 Score=31.13 Aligned_cols=124 Identities=19% Similarity=0.145 Sum_probs=81.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH-H--HHHHHHHHHhcCC
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV-T--FNVIMDELCKNGK 205 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~ll~~~~~~g~ 205 (256)
..+.+..++|+..|..+.+.|...-+. ............|+...|...|+++-.....|-.. - -..-...+...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356778889999999998876542221 11222234567788899999999888664444322 1 1112234567888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+++...-.+.+-..+-+.....-..|.-+-.+.|++.+|.++|+.+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888777776554444444556676677788999999988887653
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.59 E-value=0.77 Score=29.97 Aligned_cols=93 Identities=18% Similarity=0.076 Sum_probs=72.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHhc
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV---VTFNVIMDELCKN 203 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~ 203 (256)
..+....|+++.|+..|.+....-++ ....||.-.+++.-.|+.++|++=+++..+..-.-.. ..|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34778899999999999988776433 7788999999999999999999999998875212122 2334444567788
Q ss_pred CChhHHHHHHHHHHHCC
Q 047518 204 GKMDEASSLLDLMIQHG 220 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~ 220 (256)
|+-+.|..=|+..-..|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999999888877
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.49 E-value=0.076 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=18.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
-+.+..+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3556777888888888888887775
No 275
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.41 E-value=1.2 Score=31.57 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=60.0
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHH
Q 047518 45 CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYN 124 (256)
Q Consensus 45 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 124 (256)
.+.+.|+ +.|.+.|-.+...+..-++.....+...| ...+.++++.++.+.++..- ++ ..+|+..+.
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~-~~----------~~~n~eil~ 182 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSN-PD----------DNFNPEILK 182 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcC-CC----------CCCCHHHHH
Confidence 3444444 67888888888877665666655555555 46788999999988887522 11 146788889
Q ss_pred HHHHHHHhcCCHHHHH
Q 047518 125 TIIDGLCKQGFVDKAK 140 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~ 140 (256)
.|++.|.+.|+++.|.
T Consensus 183 sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 183 SLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHhcchhhhh
Confidence 9999999999998874
No 276
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.38 E-value=0.96 Score=30.22 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=37.4
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 66 (256)
.++++++..+++.+.-..|..+...++...+ +...|+|.+|.++|+.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 6777888888888877666655555555444 457788888888888887764
No 277
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=1.7 Score=32.66 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=97.5
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
.....|++.+|...|....... +.+...--.+..+|...|+.+.|..++..+...--........
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~---------------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~ 207 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA---------------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQ 207 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC---------------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHH
Confidence 4556788888888888877642 2334455667889999999999999999876542222223333
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhc
Q 047518 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 238 (256)
.-|..+.+.....+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. .-+...-..++..+.-.
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 3445555555555555555555543 23666777888889999999999888877765321 22455677778877777
Q ss_pred CChhHHH
Q 047518 239 GRVNHAK 245 (256)
Q Consensus 239 g~~~~a~ 245 (256)
|.-+.+.
T Consensus 286 g~~Dp~~ 292 (304)
T COG3118 286 GPADPLV 292 (304)
T ss_pred CCCCHHH
Confidence 7444433
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.15 E-value=2.1 Score=33.28 Aligned_cols=234 Identities=13% Similarity=0.054 Sum_probs=135.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHccCChHHHHHHHH----HHhhCC-CCCCHhhHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFK----RLNSTG-LFPDLYTHSILINC 80 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~ 80 (256)
|..+.+..+.++|+..+.+.+.+-.. ..-..++..+..+.++.|.+++++..-- ...+.. -..-...|..+.++
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677788888887776543211 1223456667777888888777655322 222110 01112345556666
Q ss_pred HHhcCCcchHHHHHHHHHhc-CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCc
Q 047518 81 FCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-----NVKPN 154 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~ 154 (256)
+-+..++.+++.+-..-... |..|.. ......-++..++.-.+.+++++..|+..... +....
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~-----------~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQ-----------LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCccc-----------ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 66656666666655443332 222211 01123344667788888899999888876542 12223
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-----cHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCC
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQP-----NVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HGV 221 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~ 221 (256)
..++..+-..|.+..|+++|.-+..+..+. ++.. .......+.-++...|..-.|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 467788888889999999988877765532 2111 112233445566777877777777766543 442
Q ss_pred CC-CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 222 RP-DAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 222 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
.+ .......+.+.|...|+.+.|+.-++..
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22 2234566777888889988887766543
No 279
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.02 E-value=0.23 Score=38.93 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=96.5
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHH----hhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHh
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRL----NSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (256)
..|..|...|.-.|+++.|+...+.- .+.|-.. -...+..+..++.-.|+++.|.+.|.......+.....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---- 271 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---- 271 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch----
Confidence 46778888888889999998876653 3334322 23578889999999999999999998755421111111
Q ss_pred hhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-----NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 112 ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.....++-.|.+.|.-..++++|+.++.+-... ...-...++=.+-.+|...|..++|+.+.+..++
T Consensus 272 -----~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 272 -----TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred -----hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 123445677888898899999999988764321 1112445666788889999999999888776653
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=0.88 Score=39.08 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=45.3
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
.-+.++|++++|.+-|-+... ...| ..++.-|....+....-.+++.+.+.|.. +...-..|+.+|.+.++.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 334556666666666554432 1111 12455555566666666666667666643 444556677777777766
Q ss_pred chHHHHHHH
Q 047518 88 SHGFVVLGR 96 (256)
Q Consensus 88 ~~a~~~~~~ 96 (256)
++-.++.+.
T Consensus 448 ~kL~efI~~ 456 (933)
T KOG2114|consen 448 EKLTEFISK 456 (933)
T ss_pred HHHHHHHhc
Confidence 655544433
No 281
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.95 E-value=2.1 Score=32.61 Aligned_cols=133 Identities=10% Similarity=0.193 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--cC----CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHH
Q 047518 52 YDTVLSLFKRLNSTGLFPDLYTHSILINCFCK--MG----RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNT 125 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 125 (256)
+++...+++.|.+.|..-+..+|-........ .. ....|..+|+.|.+.- |-. ..++...+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H--~fL---------Ts~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH--PFL---------TSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC--ccc---------cCccchhHHH
Confidence 34556677777777777666555443332222 11 2345667777777641 110 0123333344
Q ss_pred HHHHHHhcCC----HHHHHHHHHHHHhCCCCCchH--HHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 047518 126 IIDGLCKQGF----VDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYAND--WNEAKRLFIEMMDQGVQPNVVTFNVIM 197 (256)
Q Consensus 126 l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll 197 (256)
++.. ..++ .+.++.+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.|+++....|..+.
T Consensus 147 lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 147 LLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3332 2222 345667777777766654332 22333332222222 346667777777777776666555443
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.93 E-value=2.4 Score=33.06 Aligned_cols=67 Identities=13% Similarity=0.042 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP---DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 187 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.....+|..++..+.+.|.++.|...+..+...+... .+.+...-+......|+..+|+..++...+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456688899999999999999999999888643211 344555556677788999999998887765
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=1.8 Score=31.68 Aligned_cols=195 Identities=12% Similarity=0.102 Sum_probs=106.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHccCChHHHHHHHHHH----hhCCCCCCHhh--HHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPP----VSSFNIMLGCLAKNKHYDTVLSLFKRL----NSTGLFPDLYT--HSIL 77 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~--~~~l 77 (256)
.+|....+++.|...+.+..+-.....+ ...|...+-...+...+.++..++++. .+.| .|+... ..-.
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtAAmaleKA 117 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTAAMALEKA 117 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchHHHHHHHH
Confidence 3455667888888877776542221011 123344444445556666666666654 3334 333321 1111
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 047518 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVKP 153 (256)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 153 (256)
.. ....-++++|+++|++....-...+. ...-...+..+...+.+...+++|-..+.+-... .-.+
T Consensus 118 ak-~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 118 AK-ALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred HH-HhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 11 23445666777777665442100000 0112234555666777777887777666543211 1111
Q ss_pred c-hHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 047518 154 N-VVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASSLLD 214 (256)
Q Consensus 154 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (256)
+ ...|...|-.+....++..|..+++.-.+.+ -.-+..+...|+.+| ..|+.+++.+++.
T Consensus 188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 2 2345666667777889999999998854321 233567788888876 4678887776654
No 284
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.79 E-value=1.8 Score=31.14 Aligned_cols=191 Identities=15% Similarity=0.071 Sum_probs=112.8
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
..|.-|-+.|-+.-|.--|.+.....|. -+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.--
T Consensus 70 ERGvlYDSlGL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~ 146 (297)
T COG4785 70 ERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYG 146 (297)
T ss_pred HhcchhhhhhHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeec
Confidence 4566677778888888888888776665 45569999999999999999999999998874332222333333 23345
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCchHHHHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL-KMKDKNVKPNVVTYTSVIR 163 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~ 163 (256)
|+++-|.+-+.+..+..-. | |=...|--+. -..-++.+|..-+. +.... |..-|...|-
T Consensus 147 gR~~LAq~d~~~fYQ~D~~-D------------PfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV 206 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPN-D------------PFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIV 206 (297)
T ss_pred CchHhhHHHHHHHHhcCCC-C------------hHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHH
Confidence 7888888777776664211 1 1111222111 22334555554433 22222 4344444443
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQP-------NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.|. .|++. ...+++.+... .+. -..||-.+..-+...|+.++|..+|+-....++
T Consensus 207 ~~y-LgkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 207 EFY-LGKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHH-Hhhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 332 23321 12233333322 111 145677788888899999999999998887643
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.79 E-value=0.22 Score=24.76 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555443
No 286
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=1.9 Score=31.42 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=72.6
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHh-hHHHHHHH
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-THSILINC 80 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 80 (256)
.+...|+.|....+++.|+..|-+.+..+|. .+.-|..-+.++.+.++++.+..--...++. .|+.. ....+..+
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQW 87 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHH
Confidence 4567789999999999999998888775553 4456777788888899999888777776665 45543 44556677
Q ss_pred HHhcCCcchHHHHHHHHHh
Q 047518 81 FCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~ 99 (256)
......++.|+..+++...
T Consensus 88 ~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHhhccccHHHHHHHHHHH
Confidence 7888999999999988854
No 287
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.42 E-value=0.037 Score=36.97 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..+....+++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666777777777777787777665555677777788888877766777666651 112334556677777777
Q ss_pred hhHHHHHHHHHH
Q 047518 206 MDEASSLLDLMI 217 (256)
Q Consensus 206 ~~~a~~~~~~~~ 217 (256)
++++.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777776653
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.42 E-value=0.32 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+|..+..+|...|++++|+..+++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666777777777777777776654
No 289
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.41 E-value=0.3 Score=24.21 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45666666666666666666666554
No 290
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.28 E-value=3.8 Score=33.30 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=78.0
Q ss_pred HHHHhcCCHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 128 DGLCKQGFVDKAKE-LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 128 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
.--...|++-.|.+ ++..+....-.|+....... .+...|+++.+.+.+...... +.....+...+++.....|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33445566665544 44444444334455444433 345778999988887776544 334556777888888888999
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+.|..+-..|....++ ++.......-.....|-++++...|+++.
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 9999888888876554 44444444444456677888888887764
No 291
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.24 E-value=0.21 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=12.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 047518 231 LLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 231 l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555544
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.19 E-value=1.9 Score=29.64 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=20.0
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 56 LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
.++++.+.+.+++|+...+..+++.+.+.|++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 344445555666666666666666666666543
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.04 E-value=4.8 Score=33.87 Aligned_cols=179 Identities=9% Similarity=0.010 Sum_probs=106.1
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHH----HH-HHccCChHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHH
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIML----GC-LAKNKHYDTVLSLFKRLNS-------TGLFPDLYTHSILINCFC 82 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 82 (256)
....|.+.++.....+.. .....+. .+ +...++.+.|+.+++.+.+ .| .......+..+|.
T Consensus 227 ~~~~a~~~~~~~a~~g~~----~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS----EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhhcch----HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 456788888888776643 2222222 22 4456789999999998876 44 3345666777777
Q ss_pred hcC-----CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCc
Q 047518 83 KMG-----RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK---QGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 83 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
+.. +.+.|..++.+..+.|.... . ..+...|.. ..+...|..+|...-+.|.. .
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g~~~a---------------~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~ 361 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELGNPDA---------------Q--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L 361 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcCCchH---------------H--HHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H
Confidence 754 44568888888887654322 1 122223322 24678999999998888753 2
Q ss_pred hHHHHHHHHHH--hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 155 VVTYTSVIRGF--CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 155 ~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
..-+..++-.. ....+...|..++++..+.| .|...--...+..+.. ++++.+.-.+..+...|
T Consensus 362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 22222222111 23347888888888888887 3332222233333444 66666666666655544
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.02 E-value=0.41 Score=22.57 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666665554
No 295
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.99 E-value=2.1 Score=30.30 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=55.6
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCCh
Q 047518 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ---HGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
..+.|+ +.|.+.|-.+...+.--+......+...|. ..+.+++..++....+ .+-.+|+..+..|+..|.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 355555 567777777776665545555555555554 6788888888887764 23367888899999999999988
Q ss_pred hHHH
Q 047518 242 NHAK 245 (256)
Q Consensus 242 ~~a~ 245 (256)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.95 E-value=5.9 Score=35.88 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=99.2
Q ss_pred HHHHHccCChHHHHHHHHHHhhCC-----CCCCH--hhHHHHHHHHHhcC--CcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTG-----LFPDL--YTHSILINCFCKMG--RVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~--~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
+-+-..+.++.+-+.+++++.+.. .+.|. .-|...+..+...| -+++...+.+ +.|+-+ -.+
T Consensus 858 ~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~---kh~Ly~------~aL 928 (1265)
T KOG1920|consen 858 LVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIK---KHGLYD------EAL 928 (1265)
T ss_pred HHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHH---hcccch------hhh
Confidence 334455677777777777776431 11111 12333444444444 3444443332 222211 112
Q ss_pred hhcCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 047518 114 KVCKPDAITYNT----IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189 (256)
Q Consensus 114 ~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (256)
.-..++...+.. ....+.....+++|.-.|+..-+. ...+.+|...|+|.+|+.+..++.... .--
T Consensus 929 ~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~-de~ 998 (1265)
T KOG1920|consen 929 ALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK-DEL 998 (1265)
T ss_pred heeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH-HHH
Confidence 234555554444 444555677888888777765432 345677888899999999888775321 111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
..+-..|+.-+...+++-+|.++..+.... ....+..|++...|++|.++.
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHH
Confidence 222366778888999999999998887653 122233344445555555543
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.90 E-value=0.42 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+..+..++...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666667777777777777766554
No 298
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.82 E-value=2.6 Score=31.48 Aligned_cols=88 Identities=10% Similarity=0.050 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-----
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL----- 200 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----- 200 (256)
=|.+++..++|.+++...-+--+.--+........=|-.|.+.+++..+.++-.......-.-+...|..++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 367778888888777666554332212233334444555677888888777777776542222233355544443
Q ss_pred HhcCChhHHHHHH
Q 047518 201 CKNGKMDEASSLL 213 (256)
Q Consensus 201 ~~~g~~~~a~~~~ 213 (256)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4567888887776
No 299
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.81 E-value=3.2 Score=31.23 Aligned_cols=86 Identities=10% Similarity=0.162 Sum_probs=56.2
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCC
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDL-----MIQHGVRP 223 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~ 223 (256)
+..++..+...++..++..++|.+-.++|+..... +..-|.+.|..+|..-...|+..-..++.++ +.+.++..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v 276 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV 276 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC
Confidence 34566667777777778888888888877777654 4556777788888888888877766666553 22344555
Q ss_pred CHHhHHHHHHHH
Q 047518 224 DAFTYNTLLDGF 235 (256)
Q Consensus 224 ~~~~~~~l~~~~ 235 (256)
+...-..+-..+
T Consensus 277 ~~~L~~~L~~LF 288 (292)
T PF13929_consen 277 TDELRSQLSELF 288 (292)
T ss_pred CHHHHHHHHHHH
Confidence 555444444333
No 300
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=2.9 Score=30.47 Aligned_cols=29 Identities=3% Similarity=0.085 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
+..+...-+..+++.+|+++|++.....+
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445566777777777777765443
No 301
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=2.5 Score=36.08 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH
Q 047518 53 DTVLSLFKRLNS-TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 53 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~ 131 (256)
.+-+++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+..- ||...|..-+.+++
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki------------------pdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI------------------PDKRLWWLKLTALA 726 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC------------------cchhhHHHHHHHHH
Confidence 334444444422 23222333444555566667777777777666542 55666666677777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
..++|++-+++-+..+ ++.-|.-+..+|.+.|+.++|...+.+.... . ....+|.+.|++.+|.+
T Consensus 727 ~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHH
Confidence 7787777666555443 2445666777788888888887777554221 1 44566777777777766
Q ss_pred HHHH
Q 047518 212 LLDL 215 (256)
Q Consensus 212 ~~~~ 215 (256)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 5543
No 302
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.54 E-value=3.4 Score=30.84 Aligned_cols=189 Identities=12% Similarity=0.144 Sum_probs=109.7
Q ss_pred CCcCChhhHHHHHHHHHHhCCCC--CCcccHHHHHHHHHccCChHHHHHHHHHHhh---CCCC--CCHhhHHHHHHHHHh
Q 047518 11 ITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS---TGLF--PDLYTHSILINCFCK 83 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~ 83 (256)
.+...+++|+.-|++..+..+.+ ....+...++....+.+++++....+.+|.. +.+. -+..+.+.++..-+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 34568999999999998876542 2234456788999999999999998888743 2222 234566777776665
Q ss_pred cCCcchHHHHHHHHHhcCC-CCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C------
Q 047518 84 MGRVSHGFVVLGRILRSCF-TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV----K------ 152 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~------ 152 (256)
..+.+.-..+|+.-++.-- ..+. ...-.+-+.|...|...+.+.+..+++.++.+.-- .
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNe----------RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNE----------RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG 187 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcc----------eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence 5555444444443222100 0000 00011223466677777888888888877764311 0
Q ss_pred -CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHH-----HhcCChhHHH
Q 047518 153 -PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTFNVIMDEL-----CKNGKMDEAS 210 (256)
Q Consensus 153 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~-----~~~g~~~~a~ 210 (256)
--...|..-|+.|....+-.....++++...-. .-|.+... .+|+-| .+.|++++|.
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHH
Confidence 013457777777877777777777777765321 22333332 333333 3556666654
No 303
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.44 E-value=3.3 Score=30.51 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (256)
.|+.. ..-.+.|++++|...|+.+... .+-++ -...+.-.++-++.+.++++.|+...++....-+.
T Consensus 37 LY~~g-~~~L~~gn~~~A~~~fe~l~~~-~p~s~-----------~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 37 LYNEG-LTELQKGNYEEAIKYFEALDSR-HPFSP-----------YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHc-CCCCc-----------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 34433 3445678888888888877754 11111 12334455667778888888888888887765433
Q ss_pred CchHHHHHHHHHHhcc-------CCHH---HHHHHHHHHHHc----CCCCcHHHH------------HHHHHHHHhcCCh
Q 047518 153 PNVVTYTSVIRGFCYA-------NDWN---EAKRLFIEMMDQ----GVQPNVVTF------------NVIMDELCKNGKM 206 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~-------~~~~---~a~~~~~~~~~~----~~~~~~~~~------------~~ll~~~~~~g~~ 206 (256)
-....|...|.+.+.- .+.. .|..-+++++.. ...||...- ..+.+.|.+.|.+
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 3333444444444321 2233 334444444433 112222111 3455678889999
Q ss_pred hHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
-.|..-++.|.+. .+-+. ...-.+..+|...|-.++|.+.-+-+
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 9999889888876 33232 34556677888888888887765443
No 304
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.37 E-value=0.32 Score=34.72 Aligned_cols=75 Identities=9% Similarity=0.096 Sum_probs=57.6
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC--CCCCHhhHHHHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCF 81 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~ 81 (256)
..++.+++.+++++++...+.-.+..|. |...-..++..++-.|+|++|..-++-.-+.. ..+-...|..++.+-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt--da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT--DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc--cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3455678889999999999888886665 77788889999999999999998887765542 234456777777653
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.31 E-value=1.7 Score=26.92 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
=+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.. +.+....|..++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 366777777888888999999999999999999999999999998855 2333336666654
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.26 E-value=0.63 Score=21.76 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.|..+...|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666667777776666666543
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.13 E-value=1.7 Score=26.59 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+.=++.+-++.+......|++....+.+++|.+.+++..|.++++-.+.. +..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44567778888888888999999999999999999999999999988744 2224456665554
No 308
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.98 E-value=0.3 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 229 NTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+..++.+.|++++|.+.|+++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666777777777776654
No 309
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.95 E-value=4.2 Score=30.63 Aligned_cols=119 Identities=9% Similarity=0.097 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHhc-cC-CHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChhH
Q 047518 133 QGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCY-AN-DWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDE 208 (256)
Q Consensus 133 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~ 208 (256)
...+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +..++..+...++..+++.++|.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445677777774322 2344477777888877655 22 333344444444432 457788899999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 209 ASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 209 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
-.++++.-... +..-|...|..+|......|+..- +++++..|
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~----~~kiI~~G 264 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV----MRKIIDDG 264 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH----HHHHhhCC
Confidence 99999987754 456688899999999999999854 44555544
No 310
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.94 E-value=3.5 Score=29.71 Aligned_cols=135 Identities=17% Similarity=0.158 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc------------
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ------------ 184 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------ 184 (256)
+.-+.+||-|.-.+...|+++.|.+.|+...+.++.-+-...|.-|.. .--|++.-|.+-+...-..
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 344678999999999999999999999999887654333333333332 2345555555444333322
Q ss_pred ----CCCCcH--------------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------CHHhHHHHHHHHHhcC
Q 047518 185 ----GVQPNV--------------VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP-------DAFTYNTLLDGFCLTG 239 (256)
Q Consensus 185 ----~~~~~~--------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g 239 (256)
.+.|.. .-|...|-.+. .|++. ...+++.+... -.. -..||.-+...+...|
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY-LGKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccc
Confidence 222211 11211111111 01111 12223333221 111 1357888888899999
Q ss_pred ChhHHHHHHHHHHhcC
Q 047518 240 RVNHAKELFVSMESMG 255 (256)
Q Consensus 240 ~~~~a~~~~~~m~~~g 255 (256)
+.++|..+|+-.+.++
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999998776654
No 311
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.93 E-value=4.9 Score=31.32 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=94.7
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC--------CCCCHhhHHHHHHHHH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--------LFPDLYTHSILINCFC 82 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 82 (256)
-+.|+++...+....... ..++...+..+... +.++++++...++.....- .......|..++...
T Consensus 9 Wrl~~Wd~l~~~~~~~~~---~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq- 82 (352)
T PF02259_consen 9 WRLGDWDLLEEYLSQSNE---DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ- 82 (352)
T ss_pred HhcCChhhHHHHHhhccC---CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh-
Confidence 456777774444433321 11233344444433 7889999988888765431 111122333333221
Q ss_pred hcCCcchHHHHH--------------HHHHh--cCCCCchhhHHhhhh------h----cCCCHHHHHHHHHHHHhcCCH
Q 047518 83 KMGRVSHGFVVL--------------GRILR--SCFTPDVVTFTSLIK------V----CKPDAITYNTIIDGLCKQGFV 136 (256)
Q Consensus 83 ~~~~~~~a~~~~--------------~~~~~--~~~~~~~~~~~~ll~------~----~~~~~~~~~~l~~~~~~~~~~ 136 (256)
...+++++..+. +...+ .+..++..++..++. . ......+|..++..+.+.|.+
T Consensus 83 ~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~ 162 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNF 162 (352)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCc
Confidence 122223333322 11111 133555555555554 2 334556788889999999999
Q ss_pred HHHHHHHHHHHhCCCCC---chHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 137 DKAKELFLKMKDKNVKP---NVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 137 ~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
+.|...+..+...+... .......-+...-..|+..+|...++....
T Consensus 163 ~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 163 QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999988754221 233344455666778999999999888776
No 312
>PRK11906 transcriptional regulator; Provisional
Probab=91.68 E-value=6.2 Score=31.95 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhC-CCCCc-hHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 047518 136 VDKAKELFLKMKDK-NVKPN-VVTYTSVIRGFCY---------ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 136 ~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 204 (256)
.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.+..+...+.+ +-|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677777777621 12222 3344433333211 233455666666666665 346666666666667777
Q ss_pred ChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 205 KMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+++.|...|++.... .|+ ..+|........-+|+.++|.+.+++-.
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 788888888877764 343 3455555555666778888877777643
No 313
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=91.64 E-value=2.4 Score=27.50 Aligned_cols=45 Identities=9% Similarity=0.205 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+.+..+....+.|+.......+++|.+.+++..|.++|+-...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444555556666666666666666666666666655543
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.49 E-value=0.75 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777776666543
No 315
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.43 E-value=4.9 Score=30.36 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=93.3
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------h------------
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK-------D------------ 148 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~------------ 148 (256)
.+|.++|.-+++..- -..+-..++.++....+..+|...+.... .
T Consensus 150 ~KA~ELFayLv~hkg----------------k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d 213 (361)
T COG3947 150 RKALELFAYLVEHKG----------------KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQD 213 (361)
T ss_pred hHHHHHHHHHHHhcC----------------CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcC
Confidence 467888887776521 11222334555666666666655554321 1
Q ss_pred -------CCCCCchHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCCCC----------------cHHHHHHHHHHHHhcC
Q 047518 149 -------KNVKPNVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQP----------------NVVTFNVIMDELCKNG 204 (256)
Q Consensus 149 -------~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~ll~~~~~~g 204 (256)
.+++-|..-|-..++..... ..++++.+++......-++- -..+++.....|..+|
T Consensus 214 ~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g 293 (361)
T COG3947 214 RKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAG 293 (361)
T ss_pred CceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12344556666666554322 33555555555543221110 1234566778899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+.+|.++.+.....+ +.+...+..++..+...||--.+.+-++++.+
T Consensus 294 ~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 294 KPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred ChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 9999999999998863 56777888999999999998888877776653
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.35 E-value=0.055 Score=36.11 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
..+....+.++..|++.+..++...+++.. +..-...++..|.+.|.++++.-++.++....-.
T Consensus 39 ~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~a--------- 102 (143)
T PF00637_consen 39 ENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEA--------- 102 (143)
T ss_dssp C-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTC---------
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchHHHHHHHHHHcccHHHH---------
Confidence 355777888888888887777777776611 1122345666667777777776665554322111
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
+..+...++++.|.++..+ .++...|..++..|...+.
T Consensus 103 l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 103 LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 1112334455555432222 2356677777777766554
No 317
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.14 E-value=3.6 Score=28.30 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 20 LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
.+....+.+.+.. ++...+..++..+.+.|++.....+ ...++-+|.......+-.+. +....+.++--+|.+
T Consensus 14 lEYirSl~~~~i~-~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIP-VQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 4445555555655 6777888888888888886654444 44555556554444432222 233444444444444
Q ss_pred cCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHH
Q 047518 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179 (256)
Q Consensus 100 ~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 179 (256)
+ -...+..++..+...|++-+|.++.+..... +......++.+-.+.+|...-..+++
T Consensus 87 R------------------L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 87 R------------------LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred H------------------hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 0113445566777777777777777665332 11222445555555666555555555
Q ss_pred HHHH
Q 047518 180 EMMD 183 (256)
Q Consensus 180 ~~~~ 183 (256)
-...
T Consensus 145 ff~~ 148 (167)
T PF07035_consen 145 FFEE 148 (167)
T ss_pred HHHH
Confidence 5544
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.06 E-value=0.37 Score=21.32 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 047518 229 NTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~ 249 (256)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555555555555543
No 319
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=90.86 E-value=0.68 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=14.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
|....-.+|.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344445555555555555555555443
No 320
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.68 E-value=0.81 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=14.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666666543
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=7.5 Score=32.61 Aligned_cols=132 Identities=18% Similarity=0.159 Sum_probs=78.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
..+.++..+.++|-.++|+++- +|... -.....+.|+++.|.++..+.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~-------------------- 663 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEA-------------------- 663 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhh--------------------
Confidence 4566777777777777766542 22211 122334567777776655433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 197 (256)
.+..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.| ..|...
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~AF----- 728 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNLAF----- 728 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccchHH-----
Confidence 2345577788888888888888888776543 3456666666677666666666666655 333322
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 047518 198 DELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~ 216 (256)
.+|...|+++++.+++..-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 2344567777777766543
No 322
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=90.31 E-value=1.7 Score=28.16 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+..+-++.+...++.|++......+++|.+.+|+..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666777778889999999999999999999999999999987653
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.19 E-value=1.1 Score=20.90 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666677777777777666544
No 324
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.15 E-value=7.4 Score=30.19 Aligned_cols=138 Identities=8% Similarity=0.038 Sum_probs=89.3
Q ss_pred cCCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQG------------FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.+.|+.+|-.++..--..- -.+.-+.++++..+.+. -+.......+..+.+..+.++..+-|+++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456666666664432221 14566677888777744 4777788888888888899999999999998
Q ss_pred cCCCCcHHHHHHHHHHHHh---cCChhHHHHHHHHHHH------CCC----CCCH-------HhHHHHHHHHHhcCChhH
Q 047518 184 QGVQPNVVTFNVIMDELCK---NGKMDEASSLLDLMIQ------HGV----RPDA-------FTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 184 ~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~------~~~----~~~~-------~~~~~l~~~~~~~g~~~~ 243 (256)
.. +-+...|...+..... .-.++....+|.+... .+. .+.. .++..+......+|..+.
T Consensus 94 ~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 94 KN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred HC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 74 3367788888877654 2345566666655432 111 1111 123334444567899999
Q ss_pred HHHHHHHHHhcC
Q 047518 244 AKELFVSMESMG 255 (256)
Q Consensus 244 a~~~~~~m~~~g 255 (256)
|..+++-+.+.+
T Consensus 173 Ava~~Qa~lE~n 184 (321)
T PF08424_consen 173 AVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHH
Confidence 999999888754
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.93 E-value=4.6 Score=27.52 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
+..-.+.++.+.+..++..+....+. |...++... .+...|+|.+|..+++++.... |....-..|+..|....+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC
Confidence 34456678999999999998876433 223333333 3467899999999999987663 443334444444443333
Q ss_pred hhHHHHHHHHHHHCC
Q 047518 206 MDEASSLLDLMIQHG 220 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~ 220 (256)
-..=...-+++.+.+
T Consensus 93 D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 93 DPSWRRYADEVLESG 107 (160)
T ss_pred ChHHHHHHHHHHhcC
Confidence 223333334455543
No 326
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.76 E-value=22 Score=35.15 Aligned_cols=237 Identities=13% Similarity=0.032 Sum_probs=123.3
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCCcc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-THSILINCFCKMGRVS 88 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 88 (256)
....|++++|...|+.+.+.++. ....++-++......|.+..++-..+-....- .+... .++.-+.+-.+.++++
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~--~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPD--KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCc--cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 34578899999999999886654 56678878877778888888877666655442 22222 2333344556777777
Q ss_pred hHHHHHHHHHhcCCCCchh-hHHhhhhhcCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHh--------
Q 047518 89 HGFVVLGRILRSCFTPDVV-TFTSLIKVCKPDAITYNTII-----------DGLCKQGFVDKAKELFLKMKD-------- 148 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~-------- 148 (256)
....... ...+..-... +-..++...+.|......++ .++...|-+..+.++.-++..
T Consensus 1536 ~~e~~l~--~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1536 LLESYLS--DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hhhhhhh--cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 7666644 1111111111 11222222233332221111 122222222222222221110
Q ss_pred ---CCCCCch------HHHHHHHHHHhccCCHHHHHHHH-HHHHHcCCCC-----cHHHHHHHHHHHHhcCChhHHHHHH
Q 047518 149 ---KNVKPNV------VTYTSVIRGFCYANDWNEAKRLF-IEMMDQGVQP-----NVVTFNVIMDELCKNGKMDEASSLL 213 (256)
Q Consensus 149 ---~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~ 213 (256)
.++.++. .-|...+..-....+..+-.-.+ +.+......| -..+|-...+....+|+++.|...+
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1122221 11222222111111111111111 1122221122 2567888888888999999998887
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
-...+.+ -+..+-..+......|+...|+.++++..+.
T Consensus 1694 l~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1694 LNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred Hhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7766654 3345666677888999999999999987754
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.72 E-value=5.3 Score=28.88 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQPNVVTFNVIMDE 199 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~ 199 (256)
.-++.+.+.+.+.+++.....-.+..+. +..+-..+++.++-.|+|++|..-++-.-... ..+-..+|..++.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3456777888899999888877766433 66677778888999999999988777665532 23345667666665
No 328
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.68 E-value=5.6 Score=28.11 Aligned_cols=190 Identities=17% Similarity=0.081 Sum_probs=135.0
Q ss_pred cCChHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHH
Q 047518 49 NKHYDTVLSLFKRLNSTGLF-PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~ 127 (256)
.+....+...+......... .....+......+...+.+..+...+....... ........+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 102 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELE-------------LLPNLAEALLNLG 102 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhh-------------hccchHHHHHHHH
Confidence 45666666777666655322 135677778888888999998888888776530 1123455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcC
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR-GFCYANDWNEAKRLFIEMMDQGV--QPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g 204 (256)
..+...+.+..+...+.........+ ......... .+...|+++.+...+.+...... ......+......+...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 103 LLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 88888888999999999988765443 222222333 78899999999999999966321 123344444455567889
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 205 KMDEASSLLDLMIQHGVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.+.+...+....... +. ....+..+...+...++++.|...+....+
T Consensus 182 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 182 RYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred CHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999998762 33 467788888899999999999998887665
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=12 Score=31.59 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=66.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 209 (256)
..+.|+++.|.++..+.. +..-|..|-++....+++..|.+.+.+... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 456678887777665543 566788888888899999999888877654 44555566667776655
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
..+-....+.|. .|....+|...|++++..+++.+
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 555555555542 23334456667777777776643
No 330
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.46 E-value=10 Score=30.75 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=119.5
Q ss_pred HHHHHHHHHhCCCCCCc-ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC----CHhhHHHHHHHHHhcCCcchHHHHH
Q 047518 20 LCIFDYMLRMHPSPPPV-SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP----DLYTHSILINCFCKMGRVSHGFVVL 94 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 94 (256)
.++++...+.... |+- -....+...+.+ +.+++..+.+.+....+.+ -..++..++....+.++...|.+.+
T Consensus 245 mq~l~~We~~yv~-p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 245 MQILENWENFYVH-PNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHhhccC-CchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444443333 332 223334444433 6677777666665443221 2357788888888888888888888
Q ss_pred HHHHhcCCCCchhhHHhhhh-------hcCCCHHHHHH------------------------H---HHHHHhcCC-HHHH
Q 047518 95 GRILRSCFTPDVVTFTSLIK-------VCKPDAITYNT------------------------I---IDGLCKQGF-VDKA 139 (256)
Q Consensus 95 ~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~------------------------l---~~~~~~~~~-~~~a 139 (256)
.-+.- ++|+...-..++- .+..|...++. | ..-+.+.|. -++|
T Consensus 322 ~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 322 ALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 76654 3444433333321 11111111111 1 122333444 6677
Q ss_pred HHHHHHHHhCCCCCchHHHHHHH----HHHh---ccCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHH--HHHhcCCh
Q 047518 140 KELFLKMKDKNVKPNVVTYTSVI----RGFC---YANDWNEAKRLFIEMMDQGVQPNV----VTFNVIMD--ELCKNGKM 206 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li----~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~--~~~~~g~~ 206 (256)
+.+++.+.+-..- |...-|.+. ..|. ....+..-..+-+-+.+.|++|-. ..-|.+.+ .+...|++
T Consensus 400 lnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 400 LNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 7777776654211 222222221 1221 123344444444455566766532 23333333 24567888
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
+++.-.-.-+.+ +.|++.+|..+.-+.....++++|..+++.+
T Consensus 479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 877554444433 6889999999998888999999999988765
No 331
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.35 E-value=12 Score=31.57 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhhCCCCCCHhhHHHHHH--H-HHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHH
Q 047518 52 YDTVLSLFKRLNSTGLFPDLYTHSILIN--C-FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~ 128 (256)
...|.++++.....|.. ........+. . +....+.+.|+.+++.+.+. +.+ . ....++.....+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~-~~~------~---a~~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAES-FKK------A---ATKGLPPAQYGLGR 296 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHH-HHH------H---HhhcCCccccHHHH
Confidence 45788888888877632 1111111111 2 34567889999999988772 000 0 00012223455666
Q ss_pred HHHhcC-----CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-
Q 047518 129 GLCKQG-----FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY-ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC- 201 (256)
Q Consensus 129 ~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~- 201 (256)
+|.+.. +.+.|..+|...-+.|.+ +...+-..+.-... ..+...|.++|......|.. ....+..++....
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGL 374 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCC
Confidence 666643 677899999999888754 55443333332222 24678999999999998843 3323322222222
Q ss_pred -hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 202 -KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 202 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
...+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 3347889999999998887 3332222223333334 77777776666665544
No 332
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.32 E-value=7.8 Score=29.31 Aligned_cols=171 Identities=10% Similarity=0.074 Sum_probs=101.5
Q ss_pred HHccCChHHHHHHHHHHhhCC--CCCCH------hhHHHHHHHHHhcC-CcchHHHHHHHHHhc----C-CCCchhhHHh
Q 047518 46 LAKNKHYDTVLSLFKRLNSTG--LFPDL------YTHSILINCFCKMG-RVSHGFVVLGRILRS----C-FTPDVVTFTS 111 (256)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 111 (256)
..+.|+.+.|..++.+..... ..|+. ..|+. .......+ +++.|..++++..+. + .......+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~- 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS- 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH-
Confidence 357899999999999986543 22332 12333 33344456 899999988887664 1 011100000
Q ss_pred hhhhcCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 047518 112 LIKVCKPDAITYNTIIDGLCKQGFVDK---AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188 (256)
Q Consensus 112 ll~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 188 (256)
..-..++..++.+|...+..+. |..+++.+...... ...++..-+..+.+.++.+.+.+.+.+|+..- ..
T Consensus 81 -----elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~ 153 (278)
T PF08631_consen 81 -----ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DH 153 (278)
T ss_pred -----HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-cc
Confidence 0122466778888988887664 55555556444222 34455566777777899999999999999762 22
Q ss_pred cHHHHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 189 NVVTFNVIMDEL---CKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 189 ~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
....+..++..+ ... ....+...+..+....+.|...
T Consensus 154 ~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred ccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 334555555544 332 3456667776666444455543
No 333
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.89 E-value=6.7 Score=27.98 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
.+-+.+.|++++|..-|......-.... ...|..-..++.+++.++.|+.-....++.+.. .......-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 4568889999999999999887633222 244555556778889999999988888887532 23334444567888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH
Q 047518 203 NGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
...+++|+.=|..+.+. .|...
T Consensus 181 ~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHh--CcchH
Confidence 89999999999999875 45544
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.27 E-value=2.3 Score=24.93 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=19.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
..++.++|+..|+...+.-..+. -.++..++.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554443322111 12334444444444444444433
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.24 E-value=6.8 Score=27.24 Aligned_cols=139 Identities=9% Similarity=0.090 Sum_probs=95.9
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...|...++ +.+.+..++|+.-|..+.+.|...-+. -.-..........|+...|...|+++-...
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Ypv-------------LA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPV-------------LARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchH-------------HHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 345555554 356788899999999999887653221 122234456778999999999999997765
Q ss_pred CCCchH-HHHHHHH--HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 151 VKPNVV-TYTSVIR--GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 151 ~~~~~~-~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
..|-.. -...+-. .+...|.++....-++-+...+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 125 ~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 125 SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 444433 2222222 346778899888888877766544455566777778889999999999999987643333
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.10 E-value=4.5 Score=25.07 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (256)
..++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.. ..||...|.++.. .+.|-.+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 467888887777766432 2333334445677889999998887666 4788888877644 47787787777777
Q ss_pred HHHHCCCCCCHHhH
Q 047518 215 LMIQHGVRPDAFTY 228 (256)
Q Consensus 215 ~~~~~~~~~~~~~~ 228 (256)
.|...| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 887776 4444443
No 337
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.97 E-value=14 Score=30.54 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=117.7
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.|....-+++..+.++-.+.-+..+..+|...| -+...|..++++|... ..++-..+++++.+..+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df----------- 129 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF----------- 129 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-----------
Confidence 455566778888888888888999999998875 3667888899988887 56677788888877532
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCC
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-----PNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-QGVQ 187 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~ 187 (256)
.|++.-.-|...|-+ ++.+.+...|.++..+=++ .-...|..+.... ..+.+..+.+...+.. .|..
T Consensus 130 ----nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~ 202 (711)
T COG1747 130 ----NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEG 202 (711)
T ss_pred ----hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccc
Confidence 233333444555555 7778888888877654221 1123455555421 3567777777777664 3434
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
.-...+..+-.-|....++.+|++++..+.+.+ ..|...-..++.-
T Consensus 203 ~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 203 RGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 445566666677888888999999988777653 3344444444443
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.75 E-value=6.7 Score=27.34 Aligned_cols=78 Identities=9% Similarity=0.116 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC-----------hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH-----------YDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
.+++|+.-|++.+...|. ...++..+..++...+. +++|...|++.... .|+..+|+.-+....
T Consensus 50 miedAisK~eeAL~I~P~--~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~- 124 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPN--KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA- 124 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-
Confidence 467788888888887775 44556666666554432 45566666666554 789999998887763
Q ss_pred cCCcchHHHHHHHHHhcCC
Q 047518 84 MGRVSHGFVVLGRILRSCF 102 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~ 102 (256)
+|-.++.++.+.+.
T Consensus 125 -----kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 -----KAPELHMEIHKQGL 138 (186)
T ss_dssp -----THHHHHHHHHHSSS
T ss_pred -----hhHHHHHHHHHHHh
Confidence 46677777776644
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.34 E-value=4.2 Score=23.92 Aligned_cols=46 Identities=7% Similarity=0.029 Sum_probs=19.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHH
Q 047518 202 KNGKMDEASSLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
...+.++|+..|....+.-..+. ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554443311111 12344445555555555554443
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.13 E-value=4.8 Score=30.41 Aligned_cols=60 Identities=8% Similarity=0.051 Sum_probs=49.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
++...+.|..+|.+.+|.++.+...... +.+...+-.++..+...|+--.+.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3456678889999999999999998875 56788899999999999998888888877654
No 341
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.02 E-value=15 Score=28.92 Aligned_cols=170 Identities=12% Similarity=0.056 Sum_probs=103.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhC-CCCC---CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNST-GLFP---DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
|-.+.+++.+.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+.....+.
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-------- 157 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-------- 157 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC--------
Confidence 444555555555555555554443322 2222 1134455777888888999999999988764222111
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCchHHHHH-----HHHHHhccCCHHHHHHHHHHHHH--
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD----KNVKPNVVTYTS-----VIRGFCYANDWNEAKRLFIEMMD-- 183 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~-- 183 (256)
......+|..|...|.+..++++|.-+..+..+ .++..-..-|.. +.-++...|....|.+.-++..+
T Consensus 158 -~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 158 -AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred -ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 112345788899999999999999877665432 233311122332 23455677888888887777653
Q ss_pred --cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 184 --QGVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 184 --~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.|-.+ -......+.+.|...|+.+.|..-|++..
T Consensus 237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33222 24456677888999999998888777654
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.76 E-value=9.9 Score=26.56 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 047518 120 AITYNTIIDGLCKQG----F-------VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 186 (256)
..++..+..+|...+ + +++|...|+...+. .|+..+|+.-+... .+|-.+..++.+++.
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 345555666555432 2 45555555555554 67888888777765 345666666666543
No 343
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.65 E-value=2.1 Score=34.42 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=70.8
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCF 81 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (256)
+...+..++..+.++.|..++.++++..+. .+..|..-..++.+.+++..|+.=+..+++.. |+ ...|..-..++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn--ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPN--CAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAV 82 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCc--ceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHH
Confidence 456678889999999999999999997764 66677766688999999999999888888764 33 23444445566
Q ss_pred HhcCCcchHHHHHHHHHh
Q 047518 82 CKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~ 99 (256)
...+.+.+|...|+....
T Consensus 83 m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKK 100 (476)
T ss_pred HhHHHHHHHHHHHHHhhh
Confidence 666777777777777665
No 344
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.65 E-value=6.5 Score=24.41 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (256)
..++|..+-+-+...+-. ....-.+=+..+...|++++|..+.+.+ ..||...|.+|.. .+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 356666666655554321 2222233355678999999999988776 4789888888754 46777777777666
Q ss_pred HHHhcC
Q 047518 250 SMESMG 255 (256)
Q Consensus 250 ~m~~~g 255 (256)
+|-.+|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 666554
No 345
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.14 E-value=24 Score=30.50 Aligned_cols=213 Identities=12% Similarity=0.047 Sum_probs=109.7
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHH---HhcC----------
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI---LRSC---------- 101 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~---------- 101 (256)
+...--....+....|+.+.|......+...|. ..+..++.++..+.+.|.+.... +.+++ ...|
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~ 205 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAK 205 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 444445566677778887778777777776663 34566677777776655554322 11111 1111
Q ss_pred -CCCchh----hHHhhh----------hhcCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCC-CCCch--HHHHHH
Q 047518 102 -FTPDVV----TFTSLI----------KVCKPDAITYNTIIDGL--CKQGFVDKAKELFLKMKDKN-VKPNV--VTYTSV 161 (256)
Q Consensus 102 -~~~~~~----~~~~ll----------~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l 161 (256)
+.++.. .+..+. ..++++...-..++-++ ....+.+.|...+....... ..+.. ..+..+
T Consensus 206 ~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 285 (644)
T PRK11619 206 QLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIV 285 (644)
T ss_pred hcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 111111 011111 11112221111111121 12445577777777664332 22111 122333
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
.......+...++...++...... .+......-+....+.++++.+...+..|.... .-...-...+..++...|+.
T Consensus 286 A~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~ 362 (644)
T PRK11619 286 AWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRK 362 (644)
T ss_pred HHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCH
Confidence 222223222445555555443321 234444555556668889988888888875432 33455667778887778999
Q ss_pred hHHHHHHHHHH
Q 047518 242 NHAKELFVSME 252 (256)
Q Consensus 242 ~~a~~~~~~m~ 252 (256)
++|...|++..
T Consensus 363 ~~A~~~~~~~a 373 (644)
T PRK11619 363 AEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHh
Confidence 99999888764
No 346
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.93 E-value=13 Score=27.28 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.-+...-+..+++.+|+++|+++..
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444667888899999887754
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.38 E-value=18 Score=28.31 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=55.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
.+-|.+.|.+++|+++|..-..... -+.+++..-..+|.+...+..|+.=....+..+ ...+.+|.+.+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHH
Confidence 4678999999999999998776532 288888889999999999988877666665432 2234555555544
Q ss_pred hHHHHHHH
Q 047518 207 DEASSLLD 214 (256)
Q Consensus 207 ~~a~~~~~ 214 (256)
..++..+.
T Consensus 175 R~~Lg~~~ 182 (536)
T KOG4648|consen 175 RESLGNNM 182 (536)
T ss_pred HHHHhhHH
Confidence 44433333
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.15 E-value=28 Score=30.40 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=73.7
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC----------------------C
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG----------------------L 67 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~ 67 (256)
+++.+.+++|+++-+.....-+.......+...|..+.-.|+++.|-...-.|.... +
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence 356678888888876654322211133467788888888888888877666654321 1
Q ss_pred C------CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh-------hcCCCHHHHHHHHHHHHhcC
Q 047518 68 F------PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------VCKPDAITYNTIIDGLCKQG 134 (256)
Q Consensus 68 ~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~l~~~~~~~~ 134 (256)
. .+...|..++..+.. .+ ..-|.+.++. .++....-...+. ....+...-..|+..|...+
T Consensus 446 lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~ 519 (846)
T KOG2066|consen 446 LPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDN 519 (846)
T ss_pred CCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHcc
Confidence 1 134566666666655 11 1222222221 1111111111111 11223344555889999999
Q ss_pred CHHHHHHHHHHHHh
Q 047518 135 FVDKAKELFLKMKD 148 (256)
Q Consensus 135 ~~~~a~~~~~~~~~ 148 (256)
+++.|...+-..++
T Consensus 520 ~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 520 KYEKALPIYLKLQD 533 (846)
T ss_pred ChHHHHHHHHhccC
Confidence 99999988876654
No 349
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.12 E-value=9.1 Score=27.06 Aligned_cols=53 Identities=13% Similarity=0.000 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 167 YANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
...+.+......+...+. ...|+...|..++.++...|+.++|.+...++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444333333321 23678888888888888888888888888887764
No 350
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=83.52 E-value=18 Score=27.74 Aligned_cols=72 Identities=19% Similarity=0.390 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHH-HHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHH-HHHcCCCCcHHHHHHHHHHHHhcCChhHH
Q 047518 132 KQGFVDKAKELFL-KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE-MMDQGVQPNVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 132 ~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 209 (256)
+...+++...... +|++.++ |+......+-++......|.+-.++..+ ..+ ...+|..|+.+++..|+.+..
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHH
Confidence 3344455444443 4555544 4543333333333333444433332222 222 234688888888888876543
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.41 E-value=11 Score=25.35 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=38.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 131 CKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
...++++.+..+++.|....+. +...++...+ +...|+|++|.++++++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 4488899999999988765332 2334444433 467899999999999998764
No 352
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.83 E-value=0.82 Score=35.02 Aligned_cols=96 Identities=10% Similarity=0.017 Sum_probs=74.6
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 87 (256)
-....|.++.|++.|...+..++ +....|.--.+.+.+.+++..|++=+....+. .||. .-|-.--.+....|+|
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHhcCcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhch
Confidence 34567889999999999988665 47777888888999999999999999888776 3443 3444444555667999
Q ss_pred chHHHHHHHHHhcCCCCchhh
Q 047518 88 SHGFVVLGRILRSCFTPDVVT 108 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~ 108 (256)
++|...+....+.++.+....
T Consensus 199 e~aa~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHHHHHHhccccHHHHH
Confidence 999999999999887776543
No 353
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=82.71 E-value=12 Score=25.13 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=28.0
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 204 (256)
..+.+.|.+++.. -..++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344445443332 22344444444444555555555555544444444444444444444
No 354
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=82.47 E-value=6.5 Score=21.88 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
|-.-.-.++.++...|++++|.+.++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445566666666666666665554
No 355
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.47 E-value=3.4 Score=18.69 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=17.4
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLG 44 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 44 (256)
|+++.|..+|+++....+. +...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~--~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK--SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC--ChHHHHHHHH
Confidence 4566777777777765543 4455555543
No 356
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=82.40 E-value=12 Score=25.07 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
.+.+.+.+.|++++. .-..++..+.+.++.-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 344556666666543 34456677777777788888888888877666677666667777776643
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.21 E-value=8.9 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=35.2
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCCH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 171 (256)
..+.|...-..+...+...|++++|++.+-.+.+..... +...-..++..+...|.-
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 345566677777888888888888888888887664332 344445566665555553
No 358
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=82.15 E-value=15 Score=25.81 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhhCCCCCC--HhhH-----HHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 52 YDTVLSLFKRLNSTGLFPD--LYTH-----SILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
.+.|+.+|+.+.+.-..|. .... ...+..|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 5689999999877643331 1122 23345789999999999999998874
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.04 E-value=3.9 Score=26.94 Aligned_cols=67 Identities=9% Similarity=0.019 Sum_probs=48.9
Q ss_pred CCcccHHHHHHHHHccCCh---HHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 34 PPVSSFNIMLGCLAKNKHY---DTVLSLFKRLNSTGLF-PDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
++..+--.+..++.+..+. .+-+.+++.+.+...+ -.......|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6777777788888887664 4567788888763222 22344455666788999999999999999885
No 360
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.70 E-value=17 Score=26.28 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=11.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047518 198 DELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
....+.|+.++|.+.|..+...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcC
Confidence 3334555555555555555543
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.55 E-value=3.4 Score=18.04 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
|..+...+...++++.|...|....+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44555566666666666666655543
No 362
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.49 E-value=21 Score=27.13 Aligned_cols=127 Identities=12% Similarity=0.135 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCch-------HHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCcHHHHH
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNV-------VTYTSVIRGFCYANDWNEAKRLFIEMMD----QGVQPNVVTFN 194 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 194 (256)
+.+-..+.+++++|+..|.++...|+..+. .+...+...|...|+....-+......+ ..-+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 345567889999999999999999886664 3455677888888887766665544332 11112234455
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHCCCCC-----CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 195 VIMDELCKN-GKMDEASSLLDLMIQHGVRP-----DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 195 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+++..+... ..++....+.....+..... ....-.-++..+.+.|.+.+|+.+.+.+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 555555433 34555555555554321111 11223456778889999999998766543
No 363
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.44 E-value=15 Score=25.99 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=30.7
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 132 KQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+.+......+...+. ...|+..+|..++..+...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444444333221 23566667777777777777777777777666654
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.33 E-value=29 Score=28.58 Aligned_cols=121 Identities=9% Similarity=-0.000 Sum_probs=67.0
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
..|+.-.|-+-....++..+..|+. .......+...|.++.+...+...... +.....+..++++.....|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 4566666544333444444432443 333334456678888887777655432 2234556777777777888888888
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..-.-|+...++. +.........--..|-++++...|+++...+
T Consensus 378 s~a~~~l~~eie~---------------~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIED---------------EEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCC---------------hhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 7777776543321 1111111222234466777777777776554
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.73 E-value=26 Score=27.75 Aligned_cols=129 Identities=10% Similarity=0.058 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCC--------
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD-------KNV-------- 151 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~-------- 151 (256)
+.++...|...+... |+.....++...+-.+.++-.+...+...|+.+.|.+++++..- ...
T Consensus 10 Y~~~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~ 86 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLT 86 (360)
T ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 445555555555543 44445555566677788888888999999999888888776531 111
Q ss_pred ----------CCchHHHHH---HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-hcCChhHHHHHHHHHH
Q 047518 152 ----------KPNVVTYTS---VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC-KNGKMDEASSLLDLMI 217 (256)
Q Consensus 152 ----------~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~ 217 (256)
.-|...|.+ .|....+.|.+..|+++.+-+......-|......+|+.|+ ++++++-..++.+...
T Consensus 87 ~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 87 SGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 112333333 34667899999999999999999876557777777888775 7778887888887765
Q ss_pred H
Q 047518 218 Q 218 (256)
Q Consensus 218 ~ 218 (256)
.
T Consensus 167 ~ 167 (360)
T PF04910_consen 167 A 167 (360)
T ss_pred h
Confidence 4
No 366
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.64 E-value=17 Score=26.99 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 191 VTFNVIMDELCKNGKMDEASSLLDLMIQ----HGV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
.....+..-|...|++++|.++|+.+.. .|+ .+...+...+..++.+.|+.++.+.+.=+|.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445677788999999999999998852 332 3445567778888899999999888766554
No 367
>PRK13342 recombination factor protein RarA; Reviewed
Probab=80.47 E-value=29 Score=28.09 Aligned_cols=133 Identities=16% Similarity=0.052 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhC---CC-CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh----cCCCHHHHH
Q 047518 53 DTVLSLFKRLNST---GL-FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----CKPDAITYN 124 (256)
Q Consensus 53 ~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~ 124 (256)
++...+++..... |+ ..+......++..+ .|+...+..+++.+...+...+......++.. .......+.
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~ 231 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHY 231 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHH
Confidence 4555556554322 33 44555555555432 67777788777776544222233333222221 112223344
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCCC
Q 047518 125 TIIDGLCK---QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-----WNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 125 ~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~ 187 (256)
.+++++.+ .++++.|+.++..|.+.|..|....-..++.++...|. ..-|...++.....|.+
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 45555555 47899999999999998877776655555555444432 33444555555556644
No 368
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=80.46 E-value=12 Score=23.61 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=53.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
-....++|..+.+.+...+.. ...+--+.+..+.+.|++++| +..-.. ...||...|-++. -.+.|-.+++..
T Consensus 18 G~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~ 90 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALC--AWKLGLASALES 90 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHH--HHhhccHHHHHH
Confidence 345688999999999887653 333444455667889999999 222222 2468888777664 458898899988
Q ss_pred HHHHHHHCC
Q 047518 212 LLDLMIQHG 220 (256)
Q Consensus 212 ~~~~~~~~~ 220 (256)
.+.++..+|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 888887665
No 369
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=80.06 E-value=12 Score=23.54 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
....++|..+.+-+...+. -....-.+-+..+.+.|++++| ++.- . ....||...|.+|.. .+.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~-~-~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLP-Q-CHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHH-T-TS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhc-c-cCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 4567888888888887753 2333444455678899999999 2222 2 224678777777644 588888888888
Q ss_pred HHHHHhcC
Q 047518 248 FVSMESMG 255 (256)
Q Consensus 248 ~~~m~~~g 255 (256)
+.++-.+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 88776554
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=79.96 E-value=6.8 Score=20.47 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=16.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 232 (256)
.+.|-.+++..+++.|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34444445555555555555555554444443
No 371
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.70 E-value=34 Score=28.45 Aligned_cols=165 Identities=8% Similarity=0.035 Sum_probs=112.1
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
..|....-.++..+.....+.-++.+-.+|+..| .+...|..++..|... ..+.-..+|+++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~----------------e~kmal~el~q~y~en-~n~~l~~lWer~v 125 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG----------------ESKMALLELLQCYKEN-GNEQLYSLWERLV 125 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc----------------chHHHHHHHHHHHHhc-CchhhHHHHHHHH
Confidence 3455666677788887777777777777777753 4556777888888888 6778888999888
Q ss_pred hCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCC
Q 047518 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-----PNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGV 221 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~ 221 (256)
+..+. |+..-..+..-|. .++.+.+..+|..+...-++ .-...|..+... -..+.+...++..++.+ .|.
T Consensus 126 e~dfn-Dvv~~ReLa~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~ 201 (711)
T COG1747 126 EYDFN-DVVIGRELADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGE 201 (711)
T ss_pred Hhcch-hHHHHHHHHHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhcc
Confidence 87653 4444444555554 48888999999888755221 112345554432 14567777777777764 343
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 222 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..-...+.-+-.-|....+|++|++++..+.+
T Consensus 202 ~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 202 GRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred chHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 34455666666788899999999999986654
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.16 E-value=8.9 Score=32.15 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=60.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 245 (256)
...|+...|...+.........-.-+....+...+.+.|-.-.|..++.+..... ...+.++..+..+|....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3457778888887777654322233445566666777777778888887776653 345567777788888888888888
Q ss_pred HHHHHHHhc
Q 047518 246 ELFVSMESM 254 (256)
Q Consensus 246 ~~~~~m~~~ 254 (256)
+.|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 888877654
No 373
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.04 E-value=9.3 Score=24.93 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=52.4
Q ss_pred cCChhhHHHHHHHHHHhCCC----CCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCc
Q 047518 13 TITPNEALCIFDYMLRMHPS----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRV 87 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 87 (256)
.+.-..-..++++..+.-.. ..|. -|-.+--.|++. ...+.++|+.|...|+.-. ...|......+...|++
T Consensus 39 ~~~~~~L~~lLer~~~~f~~~~~Y~nD~-RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~ 115 (126)
T PF08311_consen 39 GGKQSGLLELLERCIRKFKDDERYKNDE-RYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF 115 (126)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSGGGTT-H-HHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H
T ss_pred CCchhHHHHHHHHHHHHHhhhHhhcCCH-HHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH
Confidence 34445555666665543221 1233 233333344443 3399999999998876644 56788888899999999
Q ss_pred chHHHHHHHH
Q 047518 88 SHGFVVLGRI 97 (256)
Q Consensus 88 ~~a~~~~~~~ 97 (256)
++|.++|+..
T Consensus 116 ~~A~~I~~~G 125 (126)
T PF08311_consen 116 KKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 374
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.61 E-value=7.6 Score=20.27 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=22.5
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047518 46 LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79 (256)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 79 (256)
..+.|-..++..+++.|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777666666665554
No 375
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.27 E-value=18 Score=24.33 Aligned_cols=94 Identities=9% Similarity=0.174 Sum_probs=65.8
Q ss_pred HHhCCCCCch--HHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 047518 146 MKDKNVKPNV--VTYTSVIRGFCYANDWNEAKRLFIEMMDQG-----VQPNVVTFNVIMDELCKNGK-MDEASSLLDLMI 217 (256)
Q Consensus 146 ~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~ 217 (256)
|.+.+..++. ...+.++......++......+++.+.... -..+...|..++.+.++..- ---+..+|.-+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3444444443 335777777777788888888888775321 02355678999998876665 445677788888
Q ss_pred HCCCCCCHHhHHHHHHHHHhcC
Q 047518 218 QHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~~~g 239 (256)
+.+.++++.-|..++.++.+..
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCC
Confidence 8788999999999999887653
No 376
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.02 E-value=44 Score=28.75 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=116.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHh-hCCCCCCH--hhHHHHHHHHH-hcCCcchHHHHHHHHHhcCCCCchhhHH
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLN-STGLFPDL--YTHSILINCFC-KMGRVSHGFVVLGRILRSCFTPDVVTFT 110 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 110 (256)
+...|..||. .|++.++.+. ...+.|.. .++-.+...+. ...+++.|+.++++.....-.++..-+.
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445555554 4566666666 33334432 35555666655 6788999999999876643332221110
Q ss_pred hhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCchHHHHHH-HHHHhccCCHHHHHHHHHHHHHcC
Q 047518 111 SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVKPNVVTYTSV-IRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 111 ~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
-..-..++..+.+.+... |....++..+. +..+-...+..+ +..+...++...|.+.++.+....
T Consensus 100 ---------~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 100 ---------FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred ---------HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 012234567777777666 88888876543 222233344443 233333479999999998887532
Q ss_pred ---CCCcHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCC---------CCCCHHhHHHHHHHH--HhcCChhHHHHHHH
Q 047518 186 ---VQPNVVTFNVIMDELC--KNGKMDEASSLLDLMIQHG---------VRPDAFTYNTLLDGF--CLTGRVNHAKELFV 249 (256)
Q Consensus 186 ---~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~ 249 (256)
..|-...+..++.+.. +.+..+++.+.++.+.... ..|-..+|..+++.+ ...|+++.+...++
T Consensus 170 ~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 170 NQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2444555555555554 4555677777777664321 134456777777754 56788778887777
Q ss_pred HHHh
Q 047518 250 SMES 253 (256)
Q Consensus 250 ~m~~ 253 (256)
++.+
T Consensus 250 ~lq~ 253 (608)
T PF10345_consen 250 QLQQ 253 (608)
T ss_pred HHHH
Confidence 6653
No 377
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.46 E-value=23 Score=25.21 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH-----HHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY-----TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
.+...+..++++++|..-++..... |....+ -.|.+.....|.+++|+..++.....+. .......-.+.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 3566777788888888887766643 122222 2334555677888888888777765533 22334444567
Q ss_pred HHhcCChhHHHHHHHHHHHCC
Q 047518 200 LCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~ 220 (256)
+...|+-++|..-|......+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 777888888888888777664
No 378
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=77.15 E-value=28 Score=26.81 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----------cCChhHH
Q 047518 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL----------TGRVNHA 244 (256)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a 244 (256)
.++|+.+.+.++.|.-..+.-+.-.+.+.-.+.+.+.+|+.+... +.-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456777778888888888877777778888888888888888753 2235555555543 3666666
Q ss_pred HHHHH
Q 047518 245 KELFV 249 (256)
Q Consensus 245 ~~~~~ 249 (256)
+++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66654
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.84 E-value=30 Score=26.22 Aligned_cols=195 Identities=12% Similarity=0.053 Sum_probs=118.2
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc----CChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN----KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
+......+++..+...+......+ +......+...|... .+...|..+|...-+.|.. .....+...|.
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~ 120 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYA 120 (292)
T ss_pred cccccccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHh
Confidence 344557778888888888886633 223444455555433 4578899999988777643 33333555554
Q ss_pred h----cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHhCCC
Q 047518 83 K----MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ-----G--FVDKAKELFLKMKDKNV 151 (256)
Q Consensus 83 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~-----~--~~~~a~~~~~~~~~~~~ 151 (256)
. ..+..+|..+|.+..+.|..+. ......+...|..- - +...|...|......+
T Consensus 121 ~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 121 NGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred cCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 4 3478899999999999886653 11122333333332 1 2347888888888876
Q ss_pred CCchHHHHHHHHHH----hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---------------ChhHHHHH
Q 047518 152 KPNVVTYTSVIRGF----CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG---------------KMDEASSL 212 (256)
Q Consensus 152 ~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---------------~~~~a~~~ 212 (256)
+......+-..| .-..+..+|...|....+.|. ......+. .+...| +...|...
T Consensus 186 --~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~ 259 (292)
T COG0790 186 --NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEW 259 (292)
T ss_pred --CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHH
Confidence 333333344444 234578999999999998874 22222222 444444 66667777
Q ss_pred HHHHHHCCCCCCHHhHH
Q 047518 213 LDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~~ 229 (256)
+......+.........
T Consensus 260 ~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 260 LQKACELGFDNACEALR 276 (292)
T ss_pred HHHHHHcCChhHHHHHH
Confidence 77776666544444444
No 380
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.92 E-value=47 Score=28.02 Aligned_cols=84 Identities=20% Similarity=0.140 Sum_probs=37.3
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHH-ccCChHHHHHHHHHHhhC-CCC-CCHhhHHHHHHHHHhcCCcch
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLA-KNKHYDTVLSLFKRLNST-GLF-PDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~ 89 (256)
.|..+.+..+|++-...-| .+...|...+..+. ..|+.+...+.|+..... |.. .+...|...+..-...+++..
T Consensus 92 lg~~~~s~~Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred hhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 3455555555555544222 24444444443332 234455555555555433 111 122344444444444444544
Q ss_pred HHHHHHHHH
Q 047518 90 GFVVLGRIL 98 (256)
Q Consensus 90 a~~~~~~~~ 98 (256)
...+|++.+
T Consensus 170 v~~iyeRil 178 (577)
T KOG1258|consen 170 VANIYERIL 178 (577)
T ss_pred HHHHHHHHH
Confidence 444444444
No 381
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=75.73 E-value=8 Score=29.41 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
|+..|....+.||+++|++++++..+.|..--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345566666666666666666666666544333333
No 382
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=75.59 E-value=8.3 Score=29.31 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=21.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
|+..|....+.||+++|+.++++..+.|..--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666666666666666666666654333333
No 383
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.33 E-value=46 Score=27.59 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=69.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH---hCCCCCc-----hHHHHHHHHHHhccCCHHHHHHHHHHHHH-------cCCCCc---
Q 047518 128 DGLCKQGFVDKAKELFLKMK---DKNVKPN-----VVTYTSVIRGFCYANDWNEAKRLFIEMMD-------QGVQPN--- 189 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~--- 189 (256)
..+.-.|++.+|.+++...- ..|...+ ...||.+-..+.+.|.+..+..+|.+..+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556788888888776542 2221112 22345555555667777777777766653 354443
Q ss_pred --------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 190 --------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 190 --------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
..+||. .-.|...|++-.|.+.|.+.... ...++..|..+..+|...
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 223333 34567899999999999888764 456889999999998643
No 384
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=75.06 E-value=14 Score=24.14 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCcchHHHHHH
Q 047518 53 DTVLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
++..++|..|.+.|+.... ..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467788889888776544 456677777788899999988875
No 385
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.86 E-value=28 Score=24.83 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=43.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
..+...+++++|+..++.........+ ..+--.|.+.....|.+++|..+++.....++ .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 445566666666666665554311101 11112233445556666666666665544322 11222333445556666
Q ss_pred hhHHHHHHHHHHh
Q 047518 241 VNHAKELFVSMES 253 (256)
Q Consensus 241 ~~~a~~~~~~m~~ 253 (256)
-++|+.-|++..+
T Consensus 175 k~~Ar~ay~kAl~ 187 (207)
T COG2976 175 KQEARAAYEKALE 187 (207)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655544
No 386
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.49 E-value=76 Score=31.91 Aligned_cols=119 Identities=11% Similarity=0.045 Sum_probs=74.0
Q ss_pred HHHHHHHccCChHHHHHHHHHH----hhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRL----NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
.+..+-.+.+.+.+|...++.- ++. .....-|..+...|...++++...-+....... |+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~s----------- 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---PS----------- 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---cc-----------
Confidence 4455666788899999998883 221 112234444555899999998887777642211 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
...-+......|++..|...|+.+.+.+.. ...+++.++..-...|.++......+-..
T Consensus 1452 ------l~~qil~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1452 ------LYQQILEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred ------HHHHHHHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchh
Confidence 122344567789999999999999887532 35556655555555666666655444443
No 387
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.36 E-value=15 Score=31.11 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=0.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+.|++.+|.+.+-.+.+.+..|...-...|.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 44778888888877777766666554444443
No 388
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=73.97 E-value=4.7 Score=26.51 Aligned_cols=29 Identities=21% Similarity=0.562 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
|.-..|..+|+.|++.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 455556666666666665555 35555543
No 389
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=73.31 E-value=4.6 Score=26.55 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
...|.-..|..+|..|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667889999999999998886 57777654
No 390
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=73.21 E-value=30 Score=24.41 Aligned_cols=48 Identities=6% Similarity=0.150 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCCc--hHHHH-----HHHHHHhccCCHHHHHHHHHHHHH
Q 047518 136 VDKAKELFLKMKDKNVKPN--VVTYT-----SVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~--~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
++.|+.+|+.+.+.-..|. ..... ..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 6788888888876543331 11222 223456777778888777777776
No 391
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=72.79 E-value=18 Score=22.90 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhH
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 208 (256)
++......+..-.|.++++.+.+.+...+..|....++.+...|-..+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 445555556667788888888877766777777777778888776554
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.79 E-value=18 Score=21.81 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHH
Q 047518 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210 (256)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 210 (256)
+.++++.+.+.|+- +..-...+-.+-...|+.+.|.+++..+. .| |+ .|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhh
Confidence 44556666666543 33333333333334566777777777666 43 22 4666666666666555443
No 393
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=72.39 E-value=15 Score=23.58 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=21.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
.++..+...+.+-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445555555555555554445554444445554444
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.94 E-value=20 Score=21.85 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=31.5
Q ss_pred hccCCHHHHHHHHHHHHH----cCCCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 166 CYANDWNEAKRLFIEMMD----QGVQP----NVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~----~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+.|++..|.+.+.+..+ .+... -......+.......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 466788887666655543 22111 1222333445566778888888888777653
No 395
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=71.68 E-value=43 Score=25.63 Aligned_cols=96 Identities=13% Similarity=0.147 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCcHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMD----QGVQPNVVTF-NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF-- 226 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 226 (256)
-...+..+..-|++.++.+.+.++.++..+ .|.+.|.... ..+...|....-.++.++..+.+.+.|..-+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345667777788888888888877776654 3555554322 222333444445667777777777776543322
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 227 --TYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 227 --~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
+|.-+- +....++.+|-.++...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHH
Confidence 333322 22335677776666543
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.63 E-value=51 Score=26.43 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchH--HHHHHHHHH--hccCCHHHHHHHHHHHHHc
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGF--CYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~--~~~~~~~~a~~~~~~~~~~ 184 (256)
+..+.+.+++..|.+++..+... ++++.. .+..+..+| -..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556899999999999999987 555554 344454554 3456788899888887764
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.59 E-value=43 Score=25.59 Aligned_cols=133 Identities=15% Similarity=0.170 Sum_probs=71.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCC
Q 047518 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK----MKDKNVKP 153 (256)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~ 153 (256)
.+-..+.+++++|+..|.+++..|...+..+.+ ....+...+...|...|++..--+.... |.+-.-+-
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n-------EqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k 82 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN-------EQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK 82 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh-------HHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh
Confidence 334455666777777777777776666554433 2233445566677777776554444432 22221112
Q ss_pred chHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCCC-----CcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 154 NVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQ-----PNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 154 ~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.......++.-+... ..++..+.+.....+-..+ .....=..++..+.+.|.+.+|..++..+.
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334455555555332 3345555554444432111 112223557778889999999888776553
No 398
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=71.46 E-value=47 Score=25.99 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHH--HHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDK---NVKPNVVTY--TSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
..++...-+.++.++|++.++++... .-.|+...| ..+.+++...|+..++.+.+.+..+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444455555666666666666542 123344433 2333444555666666666666554
No 399
>PRK09687 putative lyase; Provisional
Probab=70.99 E-value=44 Score=25.44 Aligned_cols=200 Identities=11% Similarity=0.005 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc-----
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY----DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV----- 87 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 87 (256)
+++...+..+.. . +|...-...+.++.+.|+. ..+...+..+... .++..+-...+.++...+..
T Consensus 53 ~~~~~~l~~ll~---~-~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~ 126 (280)
T PRK09687 53 QDVFRLAIELCS---S-KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYS 126 (280)
T ss_pred chHHHHHHHHHh---C-CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccc
Confidence 344444444433 1 4556666777778888764 4677777766433 45666666666666655422
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (256)
..+...+...... ++..+-...+.++.+.++. .+...+-.+.+. ++..+-...+.++.+
T Consensus 127 ~~a~~~l~~~~~D-----------------~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 127 PKIVEQSQITAFD-----------------KSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNS 185 (280)
T ss_pred hHHHHHHHHHhhC-----------------CCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhc
Confidence 1223333232221 2333334445555666653 444555444442 233444444445444
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 168 AN-DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 168 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
.+ +...+...+..+.. .++...-...+.++.+.|+. .+...+-...+.+ + .....+.++...|+. +|+.
T Consensus 186 ~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred CCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHH
Confidence 32 13344444444443 34555566666666666663 3444444444432 2 233455666666664 4665
Q ss_pred HHHHHHh
Q 047518 247 LFVSMES 253 (256)
Q Consensus 247 ~~~~m~~ 253 (256)
.+.++.+
T Consensus 256 ~L~~l~~ 262 (280)
T PRK09687 256 VLDTLLY 262 (280)
T ss_pred HHHHHHh
Confidence 5555543
No 400
>PRK09857 putative transposase; Provisional
Probab=70.75 E-value=46 Score=25.55 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
+..++......++.++..++++.+.+. .+......-.+..-+.+.|.-++++++.++|...|+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445555555666666666666666554 233333444555666666766777777777777764
No 401
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=70.58 E-value=16 Score=20.33 Aligned_cols=48 Identities=19% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH-----hccCCHHHHHHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF-----CYANDWNEAKRL 177 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~ 177 (256)
+...|++=+|.++++.+......+....+..+|+.. .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 455777888888888876544444556666666553 355666666554
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.78 E-value=84 Score=28.39 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHhccCCH--HHHHHHHHHHHHcCCCCcHHHH--
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDW--NEAKRLFIEMMDQGVQPNVVTF-- 193 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~-- 193 (256)
.-|..|+..|...|+.++|+++|....+.. -..-...+..++.-..+.+.. +-++++-+-..+....-....+
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 357888999999999999999999887632 111112233344444444433 3333333333322111000001
Q ss_pred ----------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 194 ----------NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 194 ----------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
..-+-.|......+-+...++.+....-.++....+.++..|+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 01122355666777788888888765555666777777777754
No 403
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=69.56 E-value=61 Score=28.12 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHhccCCHHH------HHHHHHHHHHcCCCCcHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNE------AKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
.|..+|...|++..+.++++..... |-+.-...||..|+.+.+.|.++- +.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6788888888888888888877653 333344567777777777776432 222233222 34466777776
Q ss_pred HHHHHh
Q 047518 197 MDELCK 202 (256)
Q Consensus 197 l~~~~~ 202 (256)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 404
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.19 E-value=35 Score=29.22 Aligned_cols=95 Identities=9% Similarity=0.126 Sum_probs=66.0
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPP----VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (256)
..+....+..++..+.+.|..-.+--+...- +.....|.-+|....+.++|.+++++..+.. +.+..+--.+..+
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQS 437 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHH
Confidence 3456667778899999999886664333100 1234567778888899999999999998874 2244444556666
Q ss_pred HHhcCCcchHHHHHHHHHhc
Q 047518 81 FCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~ 100 (256)
....+..++|+.........
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHhcchHHHHHHHHHHHhh
Confidence 77788888888887766543
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.87 E-value=49 Score=25.16 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=62.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCC
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 119 (256)
..=|.++++.++|.+++...-+--+.--+....+...-|-.|.+.+++..+.++-...++..-. .+
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~N--------------q~ 152 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSN--------------QS 152 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc--------------CC
Confidence 4567899999999999988766654433334456666677789999999998888887774211 12
Q ss_pred HHHHHHHHHHHH-----hcCCHHHHHHHH
Q 047518 120 AITYNTIIDGLC-----KQGFVDKAKELF 143 (256)
Q Consensus 120 ~~~~~~l~~~~~-----~~~~~~~a~~~~ 143 (256)
..-|..++..|. =.|.+++|+.+.
T Consensus 153 lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 153 LPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred chhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 223555555544 479999998887
No 406
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=68.75 E-value=26 Score=22.02 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc--CCHHHHHHHHHHHHHcCC
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA--NDWNEAKRLFIEMMDQGV 186 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~ 186 (256)
..++.-|...++.++|...+.++.... -.......++..+... ..-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 345667777889999988888864331 1222333344433332 223334455555555543
No 407
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=67.37 E-value=25 Score=21.18 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=34.7
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 57 SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
++|+-....|+..|+..|..++....-.=..+...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 78888888999999999999998776666666667777776653
No 408
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=67.32 E-value=20 Score=20.00 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=32.0
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-----hcCCcchHHHH
Q 047518 45 CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC-----KMGRVSHGFVV 93 (256)
Q Consensus 45 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~ 93 (256)
.+...|++=+|.++++.+......+....+..+|+... +.|+...|..+
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34568899999999999976543445667777776543 45666666554
No 409
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=67.27 E-value=22 Score=22.54 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=34.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355555666667778888888888776677777777777777777654
No 410
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=67.17 E-value=44 Score=23.94 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=43.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
.+.++..+...|+++.|-++|.-+.+.. +.|. ..|..-+..+.+.+......++++.+..
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 5678889999999999999999998764 3333 3567667777776666555555555543
No 411
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=67.05 E-value=39 Score=23.39 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=46.7
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHH
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 209 (256)
+.+...|++++..- ..++..+...++.-.|.++++.+.+.+..++..|...-|..+.+.|-+.+.
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 34556677755543 345555555667778999999999888777888887888888888876544
No 412
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=66.99 E-value=40 Score=23.38 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=40.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
.+..-..++..+...++.-.|.++++.+.+.+..++..|...-+..+.+.|-...
T Consensus 24 ~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 24 LTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3334556777777677778899999999988877777777777777877776543
No 413
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=66.98 E-value=21 Score=20.17 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
|+...++.++...++..-.++++..+.+....|. .+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4556788899999988889999999999988885 466777777766665
No 414
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.94 E-value=59 Score=25.34 Aligned_cols=146 Identities=10% Similarity=-0.009 Sum_probs=85.3
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHccCC------------hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 23 FDYMLRMHPSPPPVSSFNIMLGCLAKNKH------------YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
|++..+..|. |+.+|-.++..--..-. .+.-+.++++..+.+ +.+...+..++..+.+..+.+..
T Consensus 8 l~~~v~~~P~--di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 8 LNRRVRENPH--DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHhCcc--cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 4444454554 88888888764433321 345677888877773 34556777778888877777777
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC------CC----CCch--
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK---QGFVDKAKELFLKMKDK------NV----KPNV-- 155 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~~-- 155 (256)
.+-++++.... +.+...|...++.... .-.++....+|.+.... +. .+..
T Consensus 85 ~~~we~~l~~~---------------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~ 149 (321)
T PF08424_consen 85 AKKWEELLFKN---------------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPEL 149 (321)
T ss_pred HHHHHHHHHHC---------------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhH
Confidence 77787777751 2244555555554433 23455555555543321 11 1111
Q ss_pred -----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 047518 156 -----VTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186 (256)
Q Consensus 156 -----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 186 (256)
..+..+.......|..+.|..+++.+.+.++
T Consensus 150 e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 150 EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 1222233334677888999998888887654
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.25 E-value=27 Score=21.24 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=35.7
Q ss_pred HHhcCCHHHHHHHHHHHHh----CCCCC----chHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 130 LCKQGFVDKAKELFLKMKD----KNVKP----NVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~----~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
..+.|++.+|.+.+....+ .+... -....-.+...+...|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578899888666665543 33222 122333355567788999999999999874
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.17 E-value=31 Score=21.83 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
-|..++..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777777765
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.12 E-value=85 Score=26.87 Aligned_cols=98 Identities=10% Similarity=0.007 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 047518 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
.|+...|.+.+.......+.-..+....+.+...+.|-...|..++.+..... ....-++..+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 56777777777665443222222334445555556667777777777766554 33456777888888889999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHH
Q 047518 213 LDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~ 232 (256)
|++..+.. +.+..+-+.|.
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHHHhcC-CCChhhHHHHH
Confidence 99888763 33444444443
No 418
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=65.79 E-value=1e+02 Score=28.91 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=101.0
Q ss_pred CCCCCCCcCChhhHHH------HHHHH-HHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHH-------hhCCCCCCH
Q 047518 6 SGEGDITTITPNEALC------IFDYM-LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-------NSTGLFPDL 71 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~------~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~ 71 (256)
.++..+..|.+.+|.+ ++... ....+ .....|..+...+.+.++.++|+..-... ......-+.
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~--~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHP--EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcch--hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 4555666777777776 55532 22222 35567888888899999999998876543 111222344
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhc-CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK- 149 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 149 (256)
..|..+...+...+....|...+.+.... ++.-.. ..++...+++.+-..+...+.++.|.++.+...+.
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge--------~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE--------DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC--------CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56777776666777888888887776653 111110 12334444455555555668888888888877653
Q ss_pred ----CC--CCchHHHHHHHHHHhccCCHHHHHHHHHH
Q 047518 150 ----NV--KPNVVTYTSVIRGFCYANDWNEAKRLFIE 180 (256)
Q Consensus 150 ----~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 180 (256)
|. -.+..++..+.+.+...+++..|....+.
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 21 23556677777777777777666555443
No 419
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=65.52 E-value=19 Score=23.06 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=36.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
-..++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|-..
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 34567777777778889999999998887777777666777777777544
No 420
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=65.44 E-value=83 Score=26.51 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...++.-|.+.+++++|..++..|.=... .---.+.+.+.+...+..-.++-+..++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 34577799999999999999998842211 112233455555566665555666666666644
No 421
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.59 E-value=98 Score=26.73 Aligned_cols=190 Identities=12% Similarity=0.103 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHhCCCCCC--cccHHHHHHHHH-ccCChHHHHHHHHHHhhCCCCCCHh-----hHHHHHHHHHhcCCcc
Q 047518 17 NEALCIFDYMLRMHPSPPP--VSSFNIMLGCLA-KNKHYDTVLSLFKRLNSTGLFPDLY-----THSILINCFCKMGRVS 88 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 88 (256)
..|++.++-+.+....+|. +.++-.+...+. ...+++.|+..+++.....-.++.. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 3456667666643322232 344556677666 6789999999999875443222221 2334566666666555
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCchHHHHHHHHH
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI-IDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRG 164 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~ 164 (256)
|...+++.++.--..... +-...|.-+ +..+...+++..|...++.+...- ..|...++..++.+
T Consensus 118 -a~~~l~~~I~~~~~~~~~----------~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~ 186 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHS----------AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEA 186 (608)
T ss_pred -HHHHHHHHHHHHhccCch----------hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 888888877642111100 111223333 233333489999999998876532 33445555555555
Q ss_pred H--hccCCHHHHHHHHHHHHHcC---------CCCcHHHHHHHHHHH--HhcCChhHHHHHHHHHH
Q 047518 165 F--CYANDWNEAKRLFIEMMDQG---------VQPNVVTFNVIMDEL--CKNGKMDEASSLLDLMI 217 (256)
Q Consensus 165 ~--~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~ 217 (256)
. .+.+..+++.+.++++.... ..|-..+|..+++.+ ...|+++.+...++++.
T Consensus 187 ~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 187 LLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 34565677777777764321 134566677776655 46777777777766654
No 422
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.36 E-value=14 Score=28.71 Aligned_cols=93 Identities=12% Similarity=0.057 Sum_probs=62.9
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPP--VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILIN 79 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 79 (256)
++..|+.|.+..++..|...|.+-+......|+ .+.|+.-..+-...|++..|+.=....... .|+ ...|..-..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhhhH
Confidence 455678888899999999999887765443333 456777777777778888888887777765 344 334444455
Q ss_pred HHHhcCCcchHHHHHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRI 97 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~ 97 (256)
++....++..|..+.+..
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 566666666666555444
No 423
>PRK09462 fur ferric uptake regulator; Provisional
Probab=62.38 E-value=45 Score=22.41 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=42.2
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhH
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 208 (256)
+.+.+.|.+++..- ..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-..+
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34556677655543 3444555443 4577888888888887766777777777788888776543
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.61 E-value=64 Score=23.96 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=43.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQ----G-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
....+..-|...|++++|.++++.+... | ..+...+...+..++.+.|+.+....+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3345667789999999999999998632 2 23445566777788888888888777655543
No 425
>PRK09462 fur ferric uptake regulator; Provisional
Probab=60.94 E-value=48 Score=22.27 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 170 (256)
..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344556666666555544444444444444444443
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=60.51 E-value=29 Score=19.60 Aligned_cols=27 Identities=0% Similarity=-0.047 Sum_probs=10.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
++.++..++...-.+.++..+.+..+.
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~ 37 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQR 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333334444444444433
No 427
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.67 E-value=28 Score=28.03 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--C----CC-CchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDK--N----VK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
..|++.++-.|++..|+++++.+.-. + ++ -...+|--+--+|.-.+++.+|.++|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666654221 1 11 112233334445555666666666665554
No 428
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.59 E-value=1.1e+02 Score=26.01 Aligned_cols=185 Identities=14% Similarity=0.034 Sum_probs=109.5
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
+...|+..+..-...|+.+.+.-+|++..-.- ..-...|-..+......|+.+-|..++....+--.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k----------- 363 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK----------- 363 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-----------
Confidence 34567888888888899999999988875321 112345555555555668888887777666553211
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHhccCCHHHHHH---HHHHHHHcCCCCcH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV-VTYTSVIRGFCYANDWNEAKR---LFIEMMDQGVQPNV 190 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~---~~~~~~~~~~~~~~ 190 (256)
..+.+.-.-....-..|++..|..+++.+...- |+. ..-..-+..-.+.|..+.+.. ++...... .-+.
T Consensus 364 ---~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~ 436 (577)
T KOG1258|consen 364 ---KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENN 436 (577)
T ss_pred ---CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCc
Confidence 111111111223344679999999999998763 333 222233444566777777773 33333322 1122
Q ss_pred HHHHHHHH-----HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 191 VTFNVIMD-----ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 191 ~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
.+...+.- .+.-.++.+.|..++.++.+. ++++...|..++......+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22222222 233467889999999998876 5667777777777665544
No 429
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.42 E-value=62 Score=26.17 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc--C-----CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMMDQ--G-----VQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
..+++.++-.||+..|+++++.+.-. + ..-...++..+.-+|.-.+++.+|.++|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666555554311 0 01123344445555555555555555555544
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=59.37 E-value=80 Score=24.32 Aligned_cols=109 Identities=20% Similarity=0.132 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhCCC----CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 136 VDKAKELFLKMKDKNV----KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 136 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
.+.|.+.|......+. ..+......++....+.|+.+.-..+++.... .++..--..++.+++-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677888888776422 34555666677777788886665555555554 3466777888888888899999899
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCh--hHHHHHH
Q 047518 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRV--NHAKELF 248 (256)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~ 248 (256)
+++.....+..++... ..++.++...+.. +.+.+++
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHH
Confidence 9998887542223333 3444444423332 5555544
No 431
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.14 E-value=21 Score=21.07 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=14.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 047518 232 LDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
++.+.++.-.++|+++++-|.+.|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444455556666666666666555
No 432
>PRK10941 hypothetical protein; Provisional
Probab=59.04 E-value=77 Score=24.03 Aligned_cols=79 Identities=8% Similarity=-0.067 Sum_probs=53.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHH
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 236 (256)
.+.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--...|.+.|.+..|..=++...+. .-.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3556667788888888888888888763 334555665666688888888888888777654 23455555555555544
Q ss_pred h
Q 047518 237 L 237 (256)
Q Consensus 237 ~ 237 (256)
.
T Consensus 263 ~ 263 (269)
T PRK10941 263 Q 263 (269)
T ss_pred h
Confidence 3
No 433
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.88 E-value=86 Score=24.55 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
.+......|++.|+-+.|.+.++..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444555566666666665555443
No 434
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.49 E-value=69 Score=23.28 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=63.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHh---CCCCCC--cccHHHHHHHHHccCC-------hHHHHHHHHHHhhCCCCC----C
Q 047518 7 GEGDITTITPNEALCIFDYMLRM---HPSPPP--VSSFNIMLGCLAKNKH-------YDTVLSLFKRLNSTGLFP----D 70 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~--~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~----~ 70 (256)
...+.....+++|+..|....-. ...++. +..+-.+...|...|+ ...|.+.|++..+..-.| +
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 34677788899999988765432 112133 3345566667777777 345666776665443222 2
Q ss_pred -HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC
Q 047518 71 -LYTHSILINCFCKMGRVSHGFVVLGRILRSCFT 103 (256)
Q Consensus 71 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 103 (256)
......+.....+.|+.++|.++|.++...+-.
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 234445667778899999999999999987543
No 435
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=57.51 E-value=40 Score=20.31 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
++|+-....|+..|...|..++..+.-+--++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555566666666666666655555555555555555543
No 436
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.29 E-value=1.3e+02 Score=26.10 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=28.2
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
.|. +|-.|.++|+++.|.++....... .......+...+..|...
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 444 666778999999999988555443 233445566667776654
No 437
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.95 E-value=62 Score=29.06 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+..+|..|...-.+.|+.+-|+..|+..+. |..|--.|.-.|+.++-.++.+..... -|..+ ...
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r---~D~~~---~~q 735 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR---NDATG---QFQ 735 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---hhhHH---HHH
Confidence 445666666666666666666666665543 233333445556666555554444322 12111 111
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
...-.|+.++-.++++.- |..| ..|.. -..+|.-++|.++.++..++
T Consensus 736 nalYl~dv~ervkIl~n~---g~~~--laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 736 NALYLGDVKERVKILENG---GQLP--LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHhccHHHHHHHHHhc---Cccc--HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 112346666666655432 2221 12221 13467788888888776653
No 438
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.45 E-value=1.3e+02 Score=25.78 Aligned_cols=76 Identities=5% Similarity=-0.018 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
....+.+..+-+-.+......++..|.+.|-.+.+..+.+.+-..- ....-|...+..+.++|+...+..+-+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333233355556667777777777777777776655432 123445666666677777666665555554
No 439
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.37 E-value=30 Score=18.54 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=5.8
Q ss_pred ccCCHHHHHHHHHHHH
Q 047518 167 YANDWNEAKRLFIEMM 182 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~ 182 (256)
+.|+++.|.+..+.+.
T Consensus 13 kl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 13 KLGEYEKARRYCDALL 28 (53)
T ss_dssp HTT-HHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHH
Confidence 3333333333333333
No 440
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.83 E-value=84 Score=23.45 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=59.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHHhcCChh
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNV-VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT-FNVIMDELCKNGKMD 207 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~ 207 (256)
|.....+..|+..|.+.... .|+. .-|+.-+.++.+..+++.+..--...++. .||..- ...+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 34455677777766665554 3454 33556666677778888777766666654 455443 333445556777788
Q ss_pred HHHHHHHHHHH----CCCCCCHHhHHHHHHH
Q 047518 208 EASSLLDLMIQ----HGVRPDAFTYNTLLDG 234 (256)
Q Consensus 208 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~ 234 (256)
+|+..+.+..+ ...+|.......|..+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 88887777632 2333444455555544
No 441
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.80 E-value=1.6e+02 Score=26.62 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=122.7
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcc-------cHHHHHH-HHHccCChHHHHHHHHHHhhC----CCCCCHhhHHHHH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVS-------SFNIMLG-CLAKNKHYDTVLSLFKRLNST----GLFPDLYTHSILI 78 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 78 (256)
....++++|..+..++...-+. |+.. .|+.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~-~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKA-PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCc-CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3467899999999988765544 2322 2333332 334568889998888776544 1223455667777
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHH--HHHHHhcCC--HHHHHHHHHHHHhC-----
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI--IDGLCKQGF--VDKAKELFLKMKDK----- 149 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l--~~~~~~~~~--~~~a~~~~~~~~~~----- 149 (256)
.+..-.|++++|..+.++..+..-.-+...+. .|..+ ...+...|+ +.+....|......
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~-----------~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLA-----------LWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 78888899999999888776642222222211 22222 233455663 34444445444322
Q ss_pred C-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHH----HcCCCCcHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047518 150 N-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM----DQGVQPNVVT--FNVIMDELCKNGKMDEASSLLDLMIQHGVR 222 (256)
Q Consensus 150 ~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (256)
. ..+-..++..++.++.+ .+.+..-...-. .....|-... +..++......|+.++|...++++......
T Consensus 574 ~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred ccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 1 11223344555555544 333333222222 2212222222 236778888999999999999988753322
Q ss_pred C----CHHhHHHHHH--HHHhcCChhHHHHHHHH
Q 047518 223 P----DAFTYNTLLD--GFCLTGRVNHAKELFVS 250 (256)
Q Consensus 223 ~----~~~~~~~l~~--~~~~~g~~~~a~~~~~~ 250 (256)
+ +..+....+. .....|+...+...+.+
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2 2222222222 22456777777766554
No 442
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.46 E-value=87 Score=23.55 Aligned_cols=107 Identities=15% Similarity=0.055 Sum_probs=50.1
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHH----HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT----VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
+.+++++|++++..-.. .+.+.|+... +.-+++-..+.+.+++......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~Ga~----------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL----------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HTT-HHHHHHHHHHHHH----------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred ccccHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 45777888777665321 2223333322 222333334445555555555555555544322
Q ss_pred c-hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 88 S-HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 88 ~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
+ .-.++.+.+++-. ..-.....++..+..+...|.+.|++.+|...|
T Consensus 66 ~p~r~~fi~~ai~WS---------~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 66 EPERKKFIKAAIKWS---------KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -TTHHHHHHHHHHHH---------HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cchHHHHHHHHHHHH---------ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 2 2333444443311 000012356777888888999999998888765
No 443
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=55.25 E-value=1.5e+02 Score=26.19 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=25.5
Q ss_pred HHHHHHHHHH-HhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 137 DKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 137 ~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
++....+..+ ...|+..+......++... .|+...++.+++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 3444444433 3345666666666666543 4777777777766654
No 444
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.07 E-value=91 Score=23.63 Aligned_cols=181 Identities=12% Similarity=0.011 Sum_probs=113.0
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHH
Q 047518 48 KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123 (256)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 123 (256)
..+++..+...+......+.. .....+...|.. ..+...|..+|....+.|.. ...
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~-----------------~a~ 112 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA-----------------EAL 112 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH-----------------HHH
Confidence 456677888888887765422 344444444443 34567789999877776533 233
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc-----C--CHHHHHHHHHHHHHcCCCCcHHH
Q 047518 124 NTIIDGLCK----QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA-----N--DWNEAKRLFIEMMDQGVQPNVVT 192 (256)
Q Consensus 124 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~ 192 (256)
..|...|.. ..+..+|...|....+.|..+...+...+-..|..- - +...|...+.+.-..+ +...
T Consensus 113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a 189 (292)
T COG0790 113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDA 189 (292)
T ss_pred HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHH
Confidence 445555555 448999999999999998764323334444444332 1 3347888888888876 3344
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---------------ChhHHHHHHHHHHh
Q 047518 193 FNVIMDELCK----NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG---------------RVNHAKELFVSMES 253 (256)
Q Consensus 193 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~ 253 (256)
...+...|.. ..+..+|...|....+.|. ......+. .+...| +...|...+.....
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence 4444444432 3478899999999998874 33333333 444444 77777777777665
Q ss_pred cC
Q 047518 254 MG 255 (256)
Q Consensus 254 ~g 255 (256)
.|
T Consensus 266 ~~ 267 (292)
T COG0790 266 LG 267 (292)
T ss_pred cC
Confidence 54
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.89 E-value=99 Score=24.02 Aligned_cols=70 Identities=16% Similarity=0.358 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----------cCChhHH
Q 047518 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----------NGKMDEA 209 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------~g~~~~a 209 (256)
.++|+.+...++.|.-.++..+.-.+.+.=.+..++.+|+.+...... |..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456777888899999999998888888889999999999999864322 6666666653 4666666
Q ss_pred HHHHH
Q 047518 210 SSLLD 214 (256)
Q Consensus 210 ~~~~~ 214 (256)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66554
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.85 E-value=89 Score=25.10 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=38.3
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHH--hcCChhHHHHHHHHHHHC
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQPNVV--TFNVIMDELC--KNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 219 (256)
...+.+++..|.++++.+... ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334778999999999998876 555544 3444444443 566788888888887764
No 447
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.70 E-value=46 Score=20.16 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCc
Q 047518 21 CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTHSILINCFCKMGRV 87 (256)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 87 (256)
..++.-...+|. |...-..+...+...|+++.|++.+-.+.+..-.. +...-..++..+.-.|.-
T Consensus 9 ~al~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 9 AALEAALAANPD--DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 334445555554 77778888899999999999999998887764222 334455566666555553
No 448
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=54.11 E-value=56 Score=20.90 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=21.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
+++.+.++.-.++|+.+++-|.+.| ..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3555566666777777777777765 4444444433
No 449
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.98 E-value=1.5e+02 Score=25.80 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=59.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPN------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
+..++..+.++|..-... +..| ......+.-+|....+.+.|.+++.+..+.+ +.++.+-..+..+....|.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcc
Confidence 456677777777665443 1112 3445667778888889999999999998763 3355566666777788889
Q ss_pred hhHHHHHHHHHHh
Q 047518 241 VNHAKELFVSMES 253 (256)
Q Consensus 241 ~~~a~~~~~~m~~ 253 (256)
.++|+........
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 9999888776653
No 450
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.73 E-value=1.6e+02 Score=26.14 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=40.1
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCC---CHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFP---DLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
-+.-+.+.+.+++|+.+.+..... .| ........+..+...|++++|-...-.|..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 456677888889998888765443 33 335667778888888888888777666654
No 451
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.44 E-value=51 Score=19.97 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
.+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. +| +..|...+.++...|.-+-|.+
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 345667777777643 33344444333346789999999999998 53 3467888999988887766543
No 452
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=51.94 E-value=64 Score=21.36 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=17.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.++--+.-.|+++.|+.+.+-++++|..
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3444445667777777777777766643
No 453
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=51.87 E-value=19 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=12.5
Q ss_pred ChhhHHHHHHHHHHhCCCCCC
Q 047518 15 TPNEALCIFDYMLRMHPSPPP 35 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~ 35 (256)
+++.|+..|.++...+..|++
T Consensus 40 d~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChh
Confidence 566677777776655544333
No 454
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.65 E-value=60 Score=20.54 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56667777777777777777776665
No 455
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.52 E-value=1.2e+02 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=17.4
Q ss_pred HHHHHHHHHhccC--CHHHHHHHHHHHHHc
Q 047518 157 TYTSVIRGFCYAN--DWNEAKRLFIEMMDQ 184 (256)
Q Consensus 157 ~~~~li~~~~~~~--~~~~a~~~~~~~~~~ 184 (256)
-+..++.+|.+.+ ++++|+..+.++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3455666666666 666777766666644
No 456
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.48 E-value=71 Score=21.37 Aligned_cols=68 Identities=4% Similarity=0.060 Sum_probs=43.9
Q ss_pred CCchHHHHHHHHHHhccC---CHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 152 KPNVVTYTSVIRGFCYAN---DWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.++..+--.+.-++.+.. +..+.+.+++++.+. ...-.......|.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 345444444555555444 456677788888762 22223445556667788899999999998888875
No 457
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=51.08 E-value=35 Score=19.78 Aligned_cols=27 Identities=26% Similarity=0.483 Sum_probs=12.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 203 NGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
.|+.+.+.+++++..+.|.+|......
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~ 40 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEE 40 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 444555555555555444444443333
No 458
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.78 E-value=38 Score=26.52 Aligned_cols=94 Identities=20% Similarity=0.117 Sum_probs=65.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhcCChhH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV-VTFNVIMDELCKNGKMDE 208 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~ 208 (256)
....|.++.|+..|...+.... +....|..-.+.+.+++.+..|++=+...... .||. .-|-.=-.+-.-.|+|.+
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 3456778888888888777643 46667777777888888888888877777765 3332 233333344556788999
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 047518 209 ASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 209 a~~~~~~~~~~~~~~~~~ 226 (256)
|...|....+.+..+...
T Consensus 201 aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHHHhccccHHHH
Confidence 999998888876655443
No 459
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=50.60 E-value=1.7e+02 Score=25.43 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=10.7
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047518 129 GLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~ 147 (256)
-+...|+++.|..+|+...
T Consensus 423 ~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHCT-HHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 3455666666666666554
No 460
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.39 E-value=63 Score=26.55 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=67.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCC
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNV-VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGK 205 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~ 205 (256)
+-+.+.+.++.|..++.+..+.. |+. .-|..-..++.+.+++..|+.=...+++.. |+ ...|..=..++...++
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 44566778888888888888763 443 334444477788888888888777777653 32 2233333445556667
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
+.+|...|+.... +.|+..-....+.-|-+
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 7777777777665 46776666666665543
No 461
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.61 E-value=2e+02 Score=26.02 Aligned_cols=95 Identities=9% Similarity=0.061 Sum_probs=52.7
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCchH
Q 047518 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII-DGLCKQGFVDKAKELFLKMKDK----NVKPNVV 156 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 156 (256)
....++.+|..+..++...--.|+...-.. -...|+.|- ......|++++|.++-+..... -..+...
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~-------l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGD-------LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhh-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 456888999998888776533322111100 011233332 2234467777777777665543 1223445
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.+..+..+..-.|++++|..+.+...+
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 555666666667777777777666554
No 462
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=49.48 E-value=1e+02 Score=22.63 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=49.9
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---chHHH--HHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP---NVVTY--TSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (256)
.+.....-.|.|+--|.-...+.+|...|..- .|+.| +..++ ...|+.....|+.+.|.+.+..+...-+..|
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 44455555666655555555555555555432 22322 22222 3344555677777777777776654333333
Q ss_pred HHHHHHHHH----HHHhcCChhHHHHHHHHH
Q 047518 190 VVTFNVIMD----ELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 190 ~~~~~~ll~----~~~~~g~~~~a~~~~~~~ 216 (256)
...+-.+.. -+.+.|..++|.++.+.=
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 322222211 124566666666665543
No 463
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=49.48 E-value=54 Score=19.42 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHH
Q 047518 19 ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLF 59 (256)
Q Consensus 19 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 59 (256)
+.++|..+.+.+.. +..-...+...+...|+.+-+..+.
T Consensus 39 ~~dlf~~Le~~~~i--~~~nl~~L~~lL~~i~R~DL~~~i~ 77 (84)
T PF01335_consen 39 GLDLFEELEKRGLI--SPDNLSLLKELLKRIGRPDLLKKIE 77 (84)
T ss_dssp HHHHHHHHHHTTSS--STTBHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CCccHHHHHHHHHHhCHHHHHHHHH
Confidence 55555555555443 2223444555555555555544443
No 464
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.95 E-value=1.2e+02 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=16.6
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHH
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRL 177 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~ 177 (256)
.|+..|..++.+|...|+...+.+-
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4667777777777777766555433
No 465
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.47 E-value=76 Score=20.79 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDAF-TYNTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 249 (256)
++..++|..|..+|+-.... -|......+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777777776554433 45556666677777777777765
No 466
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.01 E-value=68 Score=20.11 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=35.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCC
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG--KMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~ 223 (256)
..++..|...++.++|...+.++... .-.......++..+...+ .-+....++..+.+.+.-+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 45666777889999999988886322 122334444455554442 2344566667777665443
No 467
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.94 E-value=1.5e+02 Score=24.09 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=100.4
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
..+.-+...|...|+++.|++.|.+.+..- .+-....|..+|..-.-.|+|.....+..+..+. |+. ...+-.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~--~~~~~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDA--NENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chh--hhhHHH
Confidence 356778889999999999999999865431 1223456777777778889999888888877764 211 112222
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH-HcCCC
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-DQGVQ 187 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~ 187 (256)
.+++-...+..+..... +.++.|.+.|-..... -+.|...+.-..+.+...-++-+--..+..... +.-..
T Consensus 226 ~v~~kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle 303 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE 303 (466)
T ss_pred hcCcchHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh
Confidence 23333334444444333 3677777666544321 123444444444555544444333323322211 10011
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHHhHHHHHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-----GVRPDAFTYNTLLD 233 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 233 (256)
..+..+..+...| .+++....++++++... -+.|.+.+...+|+
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 2233344443333 45677777777776542 23455554444443
No 468
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.65 E-value=1.6e+02 Score=24.34 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=18.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhh
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNS 64 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~ 64 (256)
..+|+-|...|+..+..+.++.+-.
T Consensus 349 ~~IIqEYFlsgDt~Evi~~L~DLn~ 373 (645)
T KOG0403|consen 349 TPIIQEYFLSGDTPEVIRSLRDLNL 373 (645)
T ss_pred HHHHHHHHhcCChHHHHHHHHHcCC
Confidence 4577888888888887777776543
No 469
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=46.60 E-value=1.1e+02 Score=22.03 Aligned_cols=30 Identities=13% Similarity=-0.004 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
....+.++..+...|+++.|-++|.-+...
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 445667778888888888888888888765
No 470
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=46.46 E-value=90 Score=21.09 Aligned_cols=84 Identities=7% Similarity=0.078 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCchHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNV-----KPNVVTYTSVIRGFCYAND-WNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
..+.++.-....+++.....+++.+..... ..+..+|.+++.+.++..- .--+..++.-+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456777777777888888887777643211 2366779999999876666 4557778888888788999999999
Q ss_pred HHHHHHhcCC
Q 047518 196 IMDELCKNGK 205 (256)
Q Consensus 196 ll~~~~~~g~ 205 (256)
++.++.+-..
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 9998776533
No 471
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=45.95 E-value=2.3e+02 Score=25.58 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHH-hCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---C----------CCcHHHHHHHHHHHH
Q 047518 136 VDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---V----------QPNVVTFNVIMDELC 201 (256)
Q Consensus 136 ~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~----------~~~~~~~~~ll~~~~ 201 (256)
.++....+..+. ..|+..+......+... ..|+...++.++++....+ + .++...+..++.++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 345555555543 34565566666555554 3578888888877755332 1 12233344444433
Q ss_pred hcCChhHHHHHHHHHHHCCCCC
Q 047518 202 KNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
..++..++..+++++...|+.+
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 3467777777777777766543
No 472
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=45.38 E-value=1.5e+02 Score=23.29 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CCchhhHHhhhhh-cCCCHHHHHHHHHHHHhcCCH
Q 047518 60 KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF--TPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFV 136 (256)
Q Consensus 60 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~-~~~~~~~~~~l~~~~~~~~~~ 136 (256)
....+.|+..+..+...++..+. |+...+..-++++.-... ..+.......+.. ...+. |. +.-....|+.
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~--f~--l~dail~g~~ 224 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNI--FD--LADALLKGDV 224 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCH--HH--HHHHHHCCCH
Confidence 34455666667666666665543 555444444444433211 2222222222211 11111 11 2234567888
Q ss_pred HHHHHHHHHHHhCCCCC
Q 047518 137 DKAKELFLKMKDKNVKP 153 (256)
Q Consensus 137 ~~a~~~~~~~~~~~~~~ 153 (256)
.+|..+++.+...|.+|
T Consensus 225 ~~a~~~l~~L~~~ge~p 241 (334)
T COG1466 225 KKALRLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHHHHHHcCCcH
Confidence 88888888888877654
No 473
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.73 E-value=1.6e+02 Score=25.19 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
|..++.++...++.+.|.++++++.+.+
T Consensus 211 yf~v~k~vv~LnDa~~a~~L~~kL~~en 238 (926)
T COG5116 211 YFYVIKAVVYLNDAEKAKALIEKLVKEN 238 (926)
T ss_pred EEEEeEEEEEeccHHHHHHHHHHHHhhh
Confidence 4455666666677777777777666543
No 474
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.42 E-value=88 Score=20.40 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 047518 173 EAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASSLLDL 215 (256)
Q Consensus 173 ~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (256)
.+.++|..|...|+... ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55556666655544322 33455555555566666666665543
No 475
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.09 E-value=85 Score=20.12 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=23.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCCHhh
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (256)
.++..+.++...++|+++++.|.+.| ..+...
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 46777778888888999998888887 334443
No 476
>PRK09687 putative lyase; Provisional
Probab=44.07 E-value=1.4e+02 Score=22.73 Aligned_cols=187 Identities=15% Similarity=0.077 Sum_probs=85.4
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc----chHHHHHHHHHhcCCCCchhhH
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV----SHGFVVLGRILRSCFTPDVVTF 109 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 109 (256)
+|.......+..+...|.. .+...+..+... ++...-...+.++...|+. .++...+..+...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--------- 101 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--------- 101 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---------
Confidence 4555555566666666543 333333333332 3445555555566666653 3455555555332
Q ss_pred HhhhhhcCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 110 TSLIKVCKPDAITYNTIIDGLCKQGF-----VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 110 ~~ll~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
.++..+-...+.++...+. ...+...+...... ++..+-...+.++.+.++ ..+...+-.+.+.
T Consensus 102 -------D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d 170 (280)
T PRK09687 102 -------DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD 170 (280)
T ss_pred -------CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC
Confidence 1233333333333333321 12223333222221 244444555666666665 3444555555442
Q ss_pred CCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 185 GVQPNVVTFNVIMDELCKNG-KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
+|...-...+.++.+.+ +...+...+..+.. .++..+-...+.++.+.|+. .|+..+-+.
T Consensus 171 ---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~ 231 (280)
T PRK09687 171 ---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKE 231 (280)
T ss_pred ---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHH
Confidence 23334444445555442 23345555555553 33555556666666666653 344444333
No 477
>PF15469 Sec5: Exocyst complex component Sec5
Probab=43.84 E-value=1.1e+02 Score=21.38 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHh
Q 047518 76 ILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 76 ~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
.-+.-+...|+++.++..|.++..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 345667788999999999988776
No 478
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=43.81 E-value=1.4e+02 Score=23.20 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=37.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH--HHHHHHhcCChhHHHHHHHHHHh
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT--LLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..+...+.++.|...++......-.|-...+.. +.+.|...|..+-|..++.++.+
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778888888888887443222344444443 34467788888888888877654
No 479
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.69 E-value=2.5e+02 Score=25.46 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=11.8
Q ss_pred HHHHHccCChHHHHHHHHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRL 62 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~ 62 (256)
...|.+.+++..|-+++.++
T Consensus 396 Adf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 396 ADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhhhHHHHHHHHHHHh
Confidence 34555566666666666555
No 480
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.95 E-value=1.2e+02 Score=22.62 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=47.7
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 66 (256)
....+.++.+.+.+++.+....-|. ....|-.+...--+.|+++.|.+.|++..+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~--w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPE--WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCch--hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3456788999999999999886554 77789999999999999999999999987763
No 481
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.92 E-value=1.9e+02 Score=23.56 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc---------CCCCc
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKN--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---------GVQPN 189 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 189 (256)
..+.-+...|..+|+++.|++.|.+..+-- .+-....|-.+|..-...|+|.....+..+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456778899999999999999999966531 1123445666666667788988888887777654 12333
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
..++..+...+. +++..|.+.|-..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 444444444433 3666666665443
No 482
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=40.86 E-value=71 Score=19.15 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 047518 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
.+.+.+++..-.+.. ....|...|+.++.+.|.-+-|..+
T Consensus 46 ~eq~~~mL~~W~~r~--g~~AT~~~L~~aL~~~~~~diae~l 85 (86)
T cd08318 46 KMQAKQLLVAWQDRE--GSQATPETLITALNAAGLNEIAESL 85 (86)
T ss_pred HHHHHHHHHHHHHhc--CccccHHHHHHHHHHcCcHHHHHhh
Confidence 455555555555431 1334566666666666655555443
No 483
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.70 E-value=1.7e+02 Score=22.51 Aligned_cols=52 Identities=21% Similarity=0.149 Sum_probs=26.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
++..+.+.++.......+..+.. ...-...++.....|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444555555555555555432 22223344445566666666666666553
No 484
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.48 E-value=80 Score=18.79 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=16.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
+++.+.++.-.++|+++++.|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3455556666667777777777665
No 485
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.25 E-value=1.6e+02 Score=22.18 Aligned_cols=124 Identities=18% Similarity=0.197 Sum_probs=55.8
Q ss_pred HHhcCCHHHHHHHH----HHHHhCCCCCchHHHHHHHHHHhccCCHH-HHHHHHHHHH---HcC--CCCcHHHHHHHHHH
Q 047518 130 LCKQGFVDKAKELF----LKMKDKNVKPNVVTYTSVIRGFCYANDWN-EAKRLFIEMM---DQG--VQPNVVTFNVIMDE 199 (256)
Q Consensus 130 ~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~---~~~--~~~~~~~~~~ll~~ 199 (256)
+.+.|+...|.++- +-..+.+.+++......++..+...+.-+ .-.++.+.+. +.+ ..-+......+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 34445544443333 22333455556555555555554443211 2233333333 111 12356667777777
Q ss_pred HHhcCChhHHHHHHHH-----------H----HHCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 200 LCKNGKMDEASSLLDL-----------M----IQHGVRPDAFTY-NTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~-----------~----~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
|.+.|++.+|+..|-. + ...|.+.+...| ...+--|.-.++...|..++....+
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888877777655421 1 112322222222 2233345566788888887766654
No 486
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=40.07 E-value=1.5e+02 Score=21.95 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=13.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047518 198 DELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.++.+.++.+.+..+.+-+.++
T Consensus 200 La~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 200 LALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcccHHHHHHHHHHHHHh
Confidence 3444446666666666666654
No 487
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=40.05 E-value=81 Score=18.72 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
|+......++..+.. +++.++...+.++...| -+-......+.......
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G-~s~~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEG-YSASDILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHh
Confidence 445566667776654 59999999999999885 56666777777777776
No 488
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.99 E-value=73 Score=19.70 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=30.0
Q ss_pred HccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCch
Q 047518 47 AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV 106 (256)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 106 (256)
.+..++..|..+|..+.+.|.. +...+..+...+..-++.+-- .++..=.+..+.|++
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gll-~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGRC-DETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCCC-ccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 3445667777777777777743 333333455555555554433 333333333444443
No 489
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=39.95 E-value=1.1e+02 Score=20.14 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF-TYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
..+..++..++.-.|..++|.++++... +.++.. .-..++..|.++.+.++..++-++..
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~Fk---WG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFK---WGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4456777777888888888888876542 333333 33457888888888888877766654
No 490
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.88 E-value=45 Score=15.76 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHH
Q 047518 206 MDEASSLLDLMIQHGVRPDAFTYNT 230 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (256)
++.|..+|+..... .|++.+|..
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHHH
Confidence 45566666666553 355555543
No 491
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.65 E-value=1.6e+02 Score=22.05 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=60.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-C-----------CCCcHHHHHHHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-G-----------VQPNVVTFNVIMDE 199 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~ll~~ 199 (256)
+..+-.--.++.+-....++.-+......++ +...|+..+|+.-++.-... | -.|.+.....++..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~ 248 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA 248 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH
Confidence 3333333333444444445544555454444 34678888888888776532 1 14666667777776
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (256)
|. .+++++|.+++.++.+.|..|.. ..+.+.+.+
T Consensus 249 ~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 249 CL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 54 56899999999999998877653 334444443
No 492
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.62 E-value=2.6e+02 Score=24.42 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=49.5
Q ss_pred HHHHHHHHH-HHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-------------CcHHHHHHHHHHHHh
Q 047518 137 DKAKELFLK-MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-------------PNVVTFNVIMDELCK 202 (256)
Q Consensus 137 ~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~ll~~~~~ 202 (256)
++....+.. +.+.|+..+......++.. ..|+...++.++++....+.. ++......++.++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~- 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA- 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 344444443 3455777677766666664 358888888888776543311 12223334444433
Q ss_pred cCChhHHHHHHHHHHHCCCCC
Q 047518 203 NGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~ 223 (256)
.|+...+..+++++.+.|..+
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 467778888888887776553
No 493
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=39.33 E-value=88 Score=18.91 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=31.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNS-TGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
....+.......|+.+.|..+++.+.+ .+ | ..+..++.++-..|....|
T Consensus 36 ~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~--~--~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 36 DKEQILAEERNKGNIAAAEELLDRLERCDK--P--GWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHhcc--C--CcHHHHHHHHHHcCCccHH
Confidence 345555555555888888888888886 32 2 3566677777777764433
No 494
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=39.28 E-value=2.2e+02 Score=23.42 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
.-|..+.|.+++..|-.+-+++.+.+..+
T Consensus 305 ~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 305 SAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 34555666777777777777776665433
No 495
>PRK10941 hypothetical protein; Provisional
Probab=39.10 E-value=1.7e+02 Score=22.22 Aligned_cols=58 Identities=7% Similarity=-0.094 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.+-.+|.+.++++.|+++.+.+....+. +..-+.----.|.+.|.+..|..=++..++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3334455555555555555555544321 222333333344555555555555555443
No 496
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=38.92 E-value=1.1e+02 Score=20.04 Aligned_cols=111 Identities=10% Similarity=0.078 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH----HHh-------c
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE----LCK-------N 203 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~-------~ 203 (256)
++.-|..++.+....+ .+...++.+....-.-.+.++..++......|.. .....+.- |.. .
T Consensus 4 Np~IA~~~l~~l~~s~------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~e-fl~~yI~~cI~~ce~~kd~~~q~ 76 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQE-FLHMYISNCIKSCESIKDKYMQN 76 (126)
T ss_pred cHHHHHHHHHHHcCCc------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHH-HHHHHHHHHHHHHHhhccccccc
Confidence 3445555555554431 2556666666677777777777777766534433 33333332 222 2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+...-.-.++..+.+.++.-....+..+-.-|.+-.+..||..+|+-++
T Consensus 77 R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 77 RLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred chhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 2344455566777777766555666666666777788999999998765
No 497
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.76 E-value=3.5e+02 Score=25.72 Aligned_cols=167 Identities=12% Similarity=0.105 Sum_probs=93.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh----------h---cCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 047518 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------V---CKPD--AITYNTIIDGLCKQGFVDKAKEL 142 (256)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----------~---~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 142 (256)
..+|...|+..+|+..|.+.... +............ + .++. ..-|..++..+-+.+..+.+.++
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg-~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSG-FGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhc-cccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33566778888888888877652 2222211111111 1 1122 34577888999999999999888
Q ss_pred HHHHHhC-CC-CCc-hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh------------
Q 047518 143 FLKMKDK-NV-KPN-VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD------------ 207 (256)
Q Consensus 143 ~~~~~~~-~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~------------ 207 (256)
-....+. +. -|+ ..+++.+.+.....|.+-+|...+-.-... .-...+...++..+..+|.++
T Consensus 1006 A~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfigl~~ 1083 (1480)
T KOG4521|consen 1006 AVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLEQ 1083 (1480)
T ss_pred HHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchHH
Confidence 7766553 11 112 345677778888888888876654322111 111334556666666777643
Q ss_pred HHHH-HHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhHHHHHH
Q 047518 208 EASS-LLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 208 ~a~~-~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
+... +++..... .+.. ...|..|-..+...+++.+|-.+.
T Consensus 1084 eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1084 EVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 3444 22222222 2222 234555555557778888876543
No 498
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.59 E-value=2.4e+02 Score=25.75 Aligned_cols=30 Identities=13% Similarity=-0.058 Sum_probs=24.3
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
+..+|..|.....+.|+.+-|+..|++...
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 667888888888888888888888877654
No 499
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.31 E-value=1.6e+02 Score=21.75 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=19.1
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (256)
++..+-+.++++++...+.++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4444555566666666666665554444444444333333
No 500
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.22 E-value=2e+02 Score=22.74 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=9.5
Q ss_pred CcchHHHHHHHHHhc
Q 047518 86 RVSHGFVVLGRILRS 100 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~ 100 (256)
-..+|++++++.++.
T Consensus 231 Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 231 TIVDAERLFKQALKA 245 (556)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345667777776664
Done!