Query 047518
Match_columns 256
No_of_seqs 422 out of 1207
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 20:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.9E-37 1.3E-41 244.9 22.3 207 18-238 8-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.8E-34 6.3E-39 229.6 22.3 190 53-256 7-206 (501)
3 2xpi_A Anaphase-promoting comp 99.9 1.7E-24 5.8E-29 177.3 25.3 238 10-253 315-578 (597)
4 2xpi_A Anaphase-promoting comp 99.9 5.3E-24 1.8E-28 174.4 25.7 222 9-236 348-595 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.1E-20 7.1E-25 145.4 27.9 240 7-254 108-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.5E-20 1.2E-24 144.1 24.0 237 10-253 43-333 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 9.7E-20 3.3E-24 144.2 23.8 171 7-183 33-239 (450)
8 4eqf_A PEX5-related protein; a 99.9 1.3E-20 4.3E-25 145.4 17.4 237 7-253 72-309 (365)
9 3spa_A Mtrpol, DNA-directed RN 99.9 4.6E-22 1.6E-26 164.7 9.7 120 119-238 126-249 (1134)
10 2y4t_A DNAJ homolog subfamily 99.9 1E-18 3.5E-23 138.3 25.6 240 7-254 67-358 (450)
11 1fch_A Peroxisomal targeting s 99.9 3.4E-19 1.2E-23 137.4 22.2 239 7-250 71-355 (368)
12 3hym_B Cell division cycle pro 99.8 6E-19 2.1E-23 133.8 22.4 241 7-253 29-298 (330)
13 3cv0_A Peroxisome targeting si 99.8 4.6E-19 1.6E-23 134.3 21.3 240 7-251 28-312 (327)
14 3hym_B Cell division cycle pro 99.8 5.2E-18 1.8E-22 128.6 25.0 228 9-242 65-322 (330)
15 3spa_A Mtrpol, DNA-directed RN 99.8 6.7E-21 2.3E-25 157.8 8.6 153 71-239 127-286 (1134)
16 2pl2_A Hypothetical conserved 99.8 3.2E-18 1.1E-22 122.5 21.2 199 34-252 3-212 (217)
17 1fch_A Peroxisomal targeting s 99.8 2.4E-17 8.2E-22 127.0 25.3 227 9-253 34-313 (368)
18 3ieg_A DNAJ homolog subfamily 99.8 7.3E-18 2.5E-22 129.2 21.7 239 6-254 9-263 (359)
19 3uq3_A Heat shock protein STI1 99.8 2.9E-18 9.9E-23 125.5 17.3 219 6-253 11-235 (258)
20 3u4t_A TPR repeat-containing p 99.8 1.1E-17 3.8E-22 123.6 19.9 231 5-254 8-250 (272)
21 4eqf_A PEX5-related protein; a 99.8 3.6E-18 1.2E-22 131.6 17.1 225 7-250 106-352 (365)
22 3mkr_A Coatomer subunit epsilo 99.8 3.7E-17 1.3E-21 122.1 21.6 217 9-254 43-264 (291)
23 3ieg_A DNAJ homolog subfamily 99.8 2.5E-16 8.5E-21 120.6 26.4 242 7-254 44-335 (359)
24 2gw1_A Mitochondrial precursor 99.8 4.6E-18 1.6E-22 136.6 17.3 94 4-101 10-103 (514)
25 2ho1_A Type 4 fimbrial biogene 99.8 2.8E-16 9.7E-21 114.7 24.9 201 36-254 37-238 (252)
26 3mkr_A Coatomer subunit epsilo 99.8 2E-17 6.9E-22 123.5 18.7 217 11-254 10-229 (291)
27 2q7f_A YRRB protein; TPR, prot 99.8 3.8E-17 1.3E-21 118.6 19.6 193 6-218 29-221 (243)
28 2gw1_A Mitochondrial precursor 99.8 5.4E-17 1.9E-21 130.3 21.1 227 7-254 244-478 (514)
29 3fp2_A TPR repeat-containing p 99.8 3.6E-17 1.2E-21 132.2 19.9 242 5-253 30-372 (537)
30 2q7f_A YRRB protein; TPR, prot 99.8 1.4E-16 4.8E-21 115.6 20.8 202 34-254 21-222 (243)
31 1ouv_A Conserved hypothetical 99.8 2E-15 6.8E-20 111.7 27.3 216 7-255 13-252 (273)
32 1xnf_A Lipoprotein NLPI; TPR, 99.8 7E-17 2.4E-21 119.4 19.3 229 6-254 11-244 (275)
33 2pl2_A Hypothetical conserved 99.8 4.2E-17 1.4E-21 116.6 17.2 190 7-217 12-212 (217)
34 2vq2_A PILW, putative fimbrial 99.8 7.8E-16 2.7E-20 110.2 23.9 202 35-253 7-210 (225)
35 2ho1_A Type 4 fimbrial biogene 99.8 5.4E-16 1.8E-20 113.2 22.0 195 7-219 44-238 (252)
36 2h6f_A Protein farnesyltransfe 99.8 3.8E-16 1.3E-20 120.5 22.1 222 10-253 107-347 (382)
37 2vq2_A PILW, putative fimbrial 99.7 1.4E-15 4.8E-20 108.8 21.8 196 7-219 15-211 (225)
38 3fp2_A TPR repeat-containing p 99.7 1.1E-15 3.7E-20 123.5 23.2 226 8-254 251-491 (537)
39 2ond_A Cleavage stimulation fa 99.7 1.6E-14 5.4E-19 108.8 26.0 219 17-254 33-270 (308)
40 1b89_A Protein (clathrin heavy 99.7 4.5E-17 1.5E-21 125.4 11.8 207 12-253 15-235 (449)
41 4abn_A Tetratricopeptide repea 99.7 7.5E-16 2.6E-20 122.8 18.6 216 15-251 83-318 (474)
42 3cv0_A Peroxisome targeting si 99.7 3.7E-14 1.3E-18 107.2 26.0 201 35-253 20-268 (327)
43 3vtx_A MAMA; tetratricopeptide 99.7 3.7E-14 1.3E-18 98.5 22.0 167 70-254 4-170 (184)
44 1ouv_A Conserved hypothetical 99.7 2E-13 7E-18 100.9 26.8 193 34-255 4-216 (273)
45 3uq3_A Heat shock protein STI1 99.7 1.5E-14 5.2E-19 105.6 19.9 194 36-254 5-202 (258)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 2E-15 6.7E-20 111.6 14.3 217 7-248 50-269 (275)
47 3vtx_A MAMA; tetratricopeptide 99.7 5.2E-14 1.8E-18 97.8 20.7 167 35-219 4-170 (184)
48 3nf1_A KLC 1, kinesin light ch 99.7 1.1E-14 3.6E-19 109.5 17.0 211 35-253 26-306 (311)
49 3u4t_A TPR repeat-containing p 99.6 1.8E-13 6.3E-18 100.8 22.1 203 35-253 2-207 (272)
50 4a1s_A PINS, partner of inscut 99.6 6.8E-15 2.3E-19 115.0 11.9 239 6-253 54-331 (411)
51 2h6f_A Protein farnesyltransfe 99.6 2.9E-13 9.8E-18 104.5 20.7 197 36-251 97-302 (382)
52 4abn_A Tetratricopeptide repea 99.6 1.9E-14 6.4E-19 114.7 13.6 190 6-215 108-317 (474)
53 3ulq_A Response regulator aspa 99.6 3.8E-14 1.3E-18 110.0 15.0 234 7-253 110-367 (383)
54 4gyw_A UDP-N-acetylglucosamine 99.6 3.5E-13 1.2E-17 111.9 20.7 166 70-253 8-173 (723)
55 3as5_A MAMA; tetratricopeptide 99.6 6.7E-13 2.3E-17 91.8 19.1 165 71-253 8-172 (186)
56 4gyw_A UDP-N-acetylglucosamine 99.6 3.2E-13 1.1E-17 112.1 19.5 167 34-218 7-173 (723)
57 2ooe_A Cleavage stimulation fa 99.6 3.5E-12 1.2E-16 103.1 25.0 218 17-253 255-491 (530)
58 1b89_A Protein (clathrin heavy 99.6 6.4E-14 2.2E-18 108.0 13.9 205 6-238 38-254 (449)
59 3as5_A MAMA; tetratricopeptide 99.6 1.3E-12 4.4E-17 90.4 19.5 166 36-219 8-173 (186)
60 3sf4_A G-protein-signaling mod 99.6 1.2E-14 4.1E-19 113.2 10.1 238 6-253 15-295 (406)
61 2ond_A Cleavage stimulation fa 99.6 1.8E-12 6.2E-17 97.5 21.5 184 16-219 80-270 (308)
62 3ro2_A PINS homolog, G-protein 99.6 2.2E-14 7.6E-19 108.6 11.1 237 6-252 11-290 (338)
63 3nf1_A KLC 1, kinesin light ch 99.6 1.8E-13 6.3E-18 102.6 15.0 203 7-218 34-306 (311)
64 2xm6_A Protein corresponding t 99.5 4.2E-11 1.4E-15 95.9 29.3 228 12-255 55-326 (490)
65 3edt_B KLC 2, kinesin light ch 99.5 2.9E-13 9.8E-18 100.1 15.6 197 48-254 13-281 (283)
66 3edt_B KLC 2, kinesin light ch 99.5 1.1E-13 3.9E-18 102.2 13.3 200 9-218 10-280 (283)
67 3q15_A PSP28, response regulat 99.5 1E-12 3.4E-17 101.8 18.4 232 8-253 109-364 (378)
68 4i17_A Hypothetical protein; T 99.5 3.4E-12 1.1E-16 91.7 19.7 133 36-184 7-146 (228)
69 4a1s_A PINS, partner of inscut 99.5 6.4E-14 2.2E-18 109.5 11.5 238 7-253 93-371 (411)
70 2xm6_A Protein corresponding t 99.5 6.2E-11 2.1E-15 94.9 29.0 224 13-255 92-361 (490)
71 3ro2_A PINS homolog, G-protein 99.5 3.9E-13 1.4E-17 101.7 12.5 238 7-253 50-331 (338)
72 3sf4_A G-protein-signaling mod 99.5 3.8E-13 1.3E-17 104.7 12.5 238 7-253 54-335 (406)
73 4i17_A Hypothetical protein; T 99.5 1.6E-11 5.5E-16 88.1 19.5 168 69-254 5-209 (228)
74 1xi4_A Clathrin heavy chain; a 99.4 6.8E-11 2.3E-15 102.1 24.0 190 35-252 1104-1307(1630)
75 2fo7_A Synthetic consensus TPR 99.4 2.7E-11 9.1E-16 79.0 16.8 130 122-254 3-132 (136)
76 1qqe_A Vesicular transport pro 99.4 8.1E-12 2.8E-16 93.3 15.9 203 39-252 40-267 (292)
77 4g1t_A Interferon-induced prot 99.4 1.5E-11 5.3E-16 97.8 18.5 238 13-255 151-460 (472)
78 1hz4_A MALT regulatory protein 99.4 1.1E-10 3.8E-15 90.0 21.5 236 10-253 24-281 (373)
79 1hz4_A MALT regulatory protein 99.4 3E-11 1E-15 93.2 18.1 236 8-253 61-321 (373)
80 4g1t_A Interferon-induced prot 99.4 1.7E-10 5.9E-15 91.7 22.7 233 15-253 116-400 (472)
81 3ulq_A Response regulator aspa 99.4 3.3E-11 1.1E-15 93.4 16.4 234 10-253 22-292 (383)
82 2pzi_A Probable serine/threoni 99.4 7.3E-12 2.5E-16 104.1 13.4 174 11-205 402-583 (681)
83 3qky_A Outer membrane assembly 99.4 6.4E-11 2.2E-15 86.8 16.7 194 34-243 13-250 (261)
84 3urz_A Uncharacterized protein 99.4 4.7E-12 1.6E-16 89.7 10.0 171 42-233 10-198 (208)
85 2fo7_A Synthetic consensus TPR 99.4 1.3E-10 4.5E-15 75.7 16.3 128 39-183 4-131 (136)
86 2pzi_A Probable serine/threoni 99.4 3.1E-11 1.1E-15 100.3 16.0 173 47-240 402-583 (681)
87 2ooe_A Cleavage stimulation fa 99.3 2.6E-10 8.9E-15 92.2 20.8 187 13-219 292-492 (530)
88 3rjv_A Putative SEL1 repeat pr 99.3 5.4E-10 1.9E-14 79.3 19.7 177 17-220 3-198 (212)
89 3urz_A Uncharacterized protein 99.3 1.5E-10 5.2E-15 81.9 16.6 177 72-254 5-186 (208)
90 3mv2_B Coatomer subunit epsilo 99.3 5.4E-09 1.9E-13 77.4 25.0 144 106-253 86-239 (310)
91 3dra_A Protein farnesyltransfe 99.3 2.6E-09 8.8E-14 79.7 23.5 220 14-253 47-286 (306)
92 3qky_A Outer membrane assembly 99.3 2.7E-10 9.1E-15 83.5 18.1 173 69-254 13-224 (261)
93 4ga2_A E3 SUMO-protein ligase 99.3 1.2E-11 4.2E-16 82.8 9.9 144 7-169 4-148 (150)
94 2vsy_A XCC0866; transferase, g 99.3 8.5E-11 2.9E-15 95.9 16.8 154 13-185 2-158 (568)
95 2r5s_A Uncharacterized protein 99.3 8.5E-12 2.9E-16 85.9 9.0 163 37-217 7-171 (176)
96 3rjv_A Putative SEL1 repeat pr 99.3 6.2E-10 2.1E-14 79.0 18.4 177 53-255 3-198 (212)
97 1qqe_A Vesicular transport pro 99.3 5.8E-11 2E-15 88.6 13.7 199 9-218 46-268 (292)
98 1xi4_A Clathrin heavy chain; a 99.3 3.2E-10 1.1E-14 98.1 18.9 193 7-252 1056-1248(1630)
99 2ifu_A Gamma-SNAP; membrane fu 99.3 2.6E-10 8.9E-15 85.7 16.6 222 11-246 2-253 (307)
100 3qou_A Protein YBBN; thioredox 99.3 3.5E-10 1.2E-14 84.2 16.6 168 68-253 114-283 (287)
101 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.4E-09 4.8E-14 77.9 19.1 169 71-255 4-214 (225)
102 2r5s_A Uncharacterized protein 99.3 2.1E-10 7.1E-15 79.0 13.8 164 72-253 7-172 (176)
103 3mv2_B Coatomer subunit epsilo 99.3 6.8E-10 2.3E-14 82.2 17.2 180 55-254 85-282 (310)
104 2vsy_A XCC0866; transferase, g 99.3 4.9E-10 1.7E-14 91.4 18.1 154 84-255 2-158 (568)
105 2yhc_A BAMD, UPF0169 lipoprote 99.2 2E-09 6.7E-14 77.1 18.5 169 39-220 7-214 (225)
106 3e4b_A ALGK; tetratricopeptide 99.2 3.5E-10 1.2E-14 89.6 15.7 127 117-252 173-314 (452)
107 2e2e_A Formate-dependent nitri 99.2 3.6E-10 1.2E-14 77.7 13.9 132 2-151 12-146 (177)
108 4ga2_A E3 SUMO-protein ligase 99.2 1.2E-10 4.3E-15 77.9 11.2 121 45-183 6-128 (150)
109 3e4b_A ALGK; tetratricopeptide 99.2 6.1E-09 2.1E-13 82.5 22.2 189 37-255 177-388 (452)
110 3q15_A PSP28, response regulat 99.2 1.7E-09 5.8E-14 83.7 18.2 201 41-250 106-328 (378)
111 3qou_A Protein YBBN; thioredox 99.2 1.5E-09 5.2E-14 80.7 17.1 167 34-218 115-283 (287)
112 1hh8_A P67PHOX, NCF-2, neutrop 99.1 7.6E-09 2.6E-13 73.2 17.1 127 122-254 8-150 (213)
113 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.4E-08 4.7E-13 71.8 18.4 129 38-185 8-151 (213)
114 3u3w_A Transcriptional activat 99.1 1E-07 3.5E-12 71.0 23.4 171 74-253 78-265 (293)
115 1a17_A Serine/threonine protei 99.1 9.6E-09 3.3E-13 69.4 16.0 130 120-252 13-144 (166)
116 2ifu_A Gamma-SNAP; membrane fu 99.1 3.6E-09 1.2E-13 79.5 15.0 194 49-252 4-222 (307)
117 4f3v_A ESX-1 secretion system 99.1 5.7E-09 2E-13 76.3 15.4 197 12-231 18-247 (282)
118 4e6h_A MRNA 3'-END-processing 99.1 3.4E-08 1.2E-12 81.5 21.6 230 17-253 326-569 (679)
119 3q7a_A Farnesyltransferase alp 99.1 8.6E-08 2.9E-12 72.4 21.9 221 13-253 67-330 (349)
120 3gyz_A Chaperone protein IPGC; 99.1 8.7E-09 3E-13 68.8 14.2 106 117-226 33-138 (151)
121 4gco_A Protein STI-1; structur 99.1 1.8E-08 6.1E-13 65.1 14.5 111 120-233 13-123 (126)
122 1na0_A Designed protein CTPR3; 99.0 3.3E-08 1.1E-12 63.1 15.4 116 120-238 9-124 (125)
123 1p5q_A FKBP52, FK506-binding p 99.0 6E-10 2.1E-14 84.8 7.8 143 14-174 127-283 (336)
124 2lni_A Stress-induced-phosphop 99.0 1.9E-08 6.4E-13 65.2 14.0 120 117-239 13-132 (133)
125 2vyi_A SGTA protein; chaperone 99.0 1.8E-08 6.3E-13 65.0 13.8 120 119-241 11-130 (131)
126 1p5q_A FKBP52, FK506-binding p 99.0 1.9E-08 6.6E-13 76.5 15.6 133 119-253 146-293 (336)
127 3u3w_A Transcriptional activat 99.0 6.8E-09 2.3E-13 77.4 12.8 166 8-183 83-265 (293)
128 2qfc_A PLCR protein; TPR, HTH, 99.0 1.8E-07 6.3E-12 69.6 20.5 172 72-252 76-264 (293)
129 2c2l_A CHIP, carboxy terminus 99.0 1.6E-09 5.4E-14 80.4 8.7 194 35-253 3-198 (281)
130 1a17_A Serine/threonine protei 99.0 5.5E-08 1.9E-12 65.6 15.8 130 71-217 13-144 (166)
131 2qfc_A PLCR protein; TPR, HTH, 99.0 2.2E-07 7.6E-12 69.2 20.3 170 39-217 78-264 (293)
132 3gw4_A Uncharacterized protein 99.0 1.4E-08 4.9E-13 71.0 13.1 161 48-218 4-175 (203)
133 3gw4_A Uncharacterized protein 99.0 1.3E-08 4.4E-13 71.3 12.8 157 82-253 3-175 (203)
134 4gco_A Protein STI-1; structur 99.0 3E-08 1E-12 64.1 13.2 96 38-149 15-110 (126)
135 4f3v_A ESX-1 secretion system 99.0 2E-08 7E-13 73.4 13.4 201 48-254 18-237 (282)
136 3dra_A Protein farnesyltransfe 99.0 5E-07 1.7E-11 67.4 21.1 199 14-231 83-299 (306)
137 1na0_A Designed protein CTPR3; 98.9 1.1E-07 3.6E-12 60.7 14.8 115 71-202 9-123 (125)
138 2e2e_A Formate-dependent nitri 98.9 4.2E-08 1.5E-12 67.2 13.2 121 82-219 21-144 (177)
139 2vyi_A SGTA protein; chaperone 98.9 1.1E-07 3.9E-12 61.1 14.7 120 70-206 11-130 (131)
140 3gyz_A Chaperone protein IPGC; 98.9 3.6E-08 1.2E-12 65.8 12.3 99 154-254 35-133 (151)
141 2lni_A Stress-induced-phosphop 98.9 1.1E-07 3.7E-12 61.6 14.5 119 69-204 14-132 (133)
142 2vgx_A Chaperone SYCD; alterna 98.9 1.2E-08 4.2E-13 67.9 9.9 110 108-219 9-118 (148)
143 2fbn_A 70 kDa peptidylprolyl i 98.9 1.1E-07 3.9E-12 66.4 14.2 133 120-254 38-186 (198)
144 1elw_A TPR1-domain of HOP; HOP 98.9 3.2E-07 1.1E-11 57.8 15.1 111 120-233 4-114 (118)
145 2vgx_A Chaperone SYCD; alterna 98.9 6.3E-08 2.1E-12 64.4 12.1 109 142-253 9-117 (148)
146 1wao_1 Serine/threonine protei 98.9 1.5E-08 5E-13 80.8 10.4 125 2-144 8-134 (477)
147 3upv_A Heat shock protein STI1 98.8 2.2E-07 7.5E-12 59.8 13.7 98 120-219 4-101 (126)
148 4b4t_Q 26S proteasome regulato 98.8 2.7E-07 9.3E-12 72.4 16.9 202 7-217 11-243 (434)
149 2fbn_A 70 kDa peptidylprolyl i 98.8 7.4E-09 2.5E-13 72.5 7.1 96 121-218 89-185 (198)
150 4gcn_A Protein STI-1; structur 98.8 1.6E-07 5.4E-12 60.7 12.9 109 120-231 8-122 (127)
151 4e6h_A MRNA 3'-END-processing 98.8 3.2E-07 1.1E-11 75.8 17.4 205 12-235 355-584 (679)
152 2xcb_A PCRH, regulatory protei 98.8 7.7E-08 2.6E-12 63.5 11.5 99 119-219 17-115 (142)
153 2c2l_A CHIP, carboxy terminus 98.8 1.2E-08 4.2E-13 75.5 8.1 187 6-218 10-198 (281)
154 2kck_A TPR repeat; tetratricop 98.8 1.3E-07 4.6E-12 59.0 11.5 102 35-150 5-107 (112)
155 4b4t_Q 26S proteasome regulato 98.8 1.3E-06 4.5E-11 68.5 19.6 201 42-252 10-243 (434)
156 3upv_A Heat shock protein STI1 98.8 2.5E-07 8.6E-12 59.5 12.9 98 154-253 3-100 (126)
157 2kck_A TPR repeat; tetratricop 98.8 2.1E-07 7.3E-12 58.1 12.2 96 121-218 7-105 (112)
158 3dss_A Geranylgeranyl transfer 98.8 1.1E-05 3.6E-10 60.7 22.9 221 12-254 41-304 (331)
159 2xcb_A PCRH, regulatory protei 98.8 2.3E-07 7.9E-12 61.1 12.6 98 154-253 17-114 (142)
160 1elr_A TPR2A-domain of HOP; HO 98.8 2E-07 6.9E-12 60.0 12.0 114 120-236 4-123 (131)
161 3q49_B STIP1 homology and U bo 98.8 5.4E-07 1.8E-11 58.7 13.9 101 117-219 6-106 (137)
162 1elw_A TPR1-domain of HOP; HOP 98.8 5.6E-07 1.9E-11 56.7 13.6 96 38-149 6-101 (118)
163 3q49_B STIP1 homology and U bo 98.8 4.8E-07 1.7E-11 58.9 13.6 99 153-253 7-105 (137)
164 2dba_A Smooth muscle cell asso 98.8 1.2E-06 3.9E-11 57.8 15.5 115 117-234 25-142 (148)
165 3ro3_A PINS homolog, G-protein 98.8 1.5E-07 5.2E-12 62.9 11.2 134 120-253 9-157 (164)
166 2dba_A Smooth muscle cell asso 98.7 9.2E-07 3.1E-11 58.2 14.5 99 34-149 26-128 (148)
167 3sz7_A HSC70 cochaperone (SGT) 98.7 4.3E-07 1.5E-11 61.3 12.9 101 117-219 8-108 (164)
168 3sz7_A HSC70 cochaperone (SGT) 98.7 5.3E-07 1.8E-11 60.9 13.1 98 154-253 10-107 (164)
169 4gcn_A Protein STI-1; structur 98.7 6E-07 2E-11 58.0 12.6 106 72-194 9-120 (127)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 2.4E-08 8.1E-13 79.2 6.4 144 14-175 248-405 (457)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 5.1E-07 1.7E-11 71.6 13.8 132 119-252 267-413 (457)
172 1hxi_A PEX5, peroxisome target 98.7 5.2E-07 1.8E-11 57.7 11.0 95 123-219 20-114 (121)
173 1elr_A TPR2A-domain of HOP; HO 98.7 5.6E-07 1.9E-11 57.8 11.2 113 71-200 4-122 (131)
174 3q7a_A Farnesyltransferase alp 98.6 1.1E-05 3.8E-10 60.9 19.1 199 15-232 104-344 (349)
175 1hxi_A PEX5, peroxisome target 98.6 7.5E-07 2.6E-11 56.9 10.8 96 157-254 19-114 (121)
176 2uy1_A Cleavage stimulation fa 98.6 4.5E-05 1.5E-09 61.0 22.3 125 121-253 287-412 (493)
177 1wao_1 Serine/threonine protei 98.6 2.9E-07 1E-11 73.3 9.7 121 126-249 12-134 (477)
178 1ihg_A Cyclophilin 40; ppiase 98.6 1.6E-06 5.6E-11 66.7 13.2 124 121-246 224-362 (370)
179 3ro3_A PINS homolog, G-protein 98.5 6.1E-07 2.1E-11 59.9 9.3 137 37-182 10-156 (164)
180 2xev_A YBGF; tetratricopeptide 98.5 1.2E-05 4.1E-10 51.5 15.1 94 124-219 6-105 (129)
181 2xev_A YBGF; tetratricopeptide 98.5 6.2E-06 2.1E-10 52.9 13.6 98 39-149 5-105 (129)
182 3rkv_A Putative peptidylprolyl 98.5 4.4E-06 1.5E-10 56.2 12.4 99 120-219 11-126 (162)
183 3n71_A Histone lysine methyltr 98.5 1.6E-06 5.4E-11 69.1 11.0 125 129-253 318-463 (490)
184 3k9i_A BH0479 protein; putativ 98.5 5.2E-07 1.8E-11 57.2 6.8 87 132-219 2-90 (117)
185 3rkv_A Putative peptidylprolyl 98.5 8.1E-06 2.8E-10 54.8 13.1 114 71-190 11-130 (162)
186 1ihg_A Cyclophilin 40; ppiase 98.4 5.2E-06 1.8E-10 63.9 13.2 138 72-211 224-362 (370)
187 2if4_A ATFKBP42; FKBP-like, al 98.4 1.3E-06 4.3E-11 66.5 9.6 131 120-254 179-328 (338)
188 1dce_A Protein (RAB geranylger 98.4 1.8E-05 6E-10 64.5 16.7 172 16-207 45-243 (567)
189 3k9i_A BH0479 protein; putativ 98.4 8.8E-07 3E-11 56.2 7.4 64 120-184 27-90 (117)
190 1klx_A Cysteine rich protein B 98.4 2.7E-05 9.3E-10 50.8 14.8 111 134-255 9-127 (138)
191 3dss_A Geranylgeranyl transfer 98.4 0.00022 7.7E-09 53.6 21.0 189 47-254 40-267 (331)
192 2if4_A ATFKBP42; FKBP-like, al 98.4 1.9E-06 6.5E-11 65.5 9.8 147 37-218 180-327 (338)
193 2uy1_A Cleavage stimulation fa 98.4 0.00013 4.4E-09 58.4 20.7 139 108-251 201-380 (493)
194 3n71_A Histone lysine methyltr 98.4 3.9E-06 1.3E-10 66.8 11.5 131 45-183 318-463 (490)
195 2hr2_A Hypothetical protein; a 98.3 2E-05 6.9E-10 52.3 12.2 98 121-218 12-130 (159)
196 2hr2_A Hypothetical protein; a 98.3 2E-05 6.9E-10 52.3 11.7 98 156-253 12-130 (159)
197 1dce_A Protein (RAB geranylger 98.3 7.9E-05 2.7E-09 60.7 17.2 175 49-242 42-243 (567)
198 2kat_A Uncharacterized protein 98.3 5.3E-06 1.8E-10 52.3 8.3 81 17-100 2-82 (115)
199 1klx_A Cysteine rich protein B 98.3 3.9E-05 1.3E-09 50.1 12.7 113 12-150 7-127 (138)
200 2l6j_A TPR repeat-containing p 98.3 1.8E-06 6E-11 53.9 5.5 62 121-183 5-66 (111)
201 1zu2_A Mitochondrial import re 98.2 2.7E-06 9.2E-11 56.4 5.6 89 9-100 11-120 (158)
202 2l6j_A TPR repeat-containing p 98.2 1.8E-05 6.2E-10 49.1 9.0 94 154-250 3-103 (111)
203 2kat_A Uncharacterized protein 98.1 3.8E-05 1.3E-09 48.2 9.8 80 138-219 3-82 (115)
204 1na3_A Designed protein CTPR2; 98.1 6.8E-05 2.3E-09 44.6 10.1 62 122-184 11-72 (91)
205 1na3_A Designed protein CTPR2; 98.1 8.8E-05 3E-09 44.0 10.6 84 154-239 8-91 (91)
206 3ma5_A Tetratricopeptide repea 97.9 0.00011 3.7E-09 44.9 8.9 65 118-183 5-69 (100)
207 3ma5_A Tetratricopeptide repea 97.9 0.0001 3.5E-09 45.0 8.4 86 154-240 6-92 (100)
208 1zu2_A Mitochondrial import re 97.8 7.5E-05 2.6E-09 49.5 7.3 101 131-235 13-134 (158)
209 3qww_A SET and MYND domain-con 97.7 0.00032 1.1E-08 55.0 10.5 87 167-253 310-410 (433)
210 3qwp_A SET and MYND domain-con 97.6 0.00071 2.4E-08 53.1 11.3 91 162-252 294-398 (429)
211 3ly7_A Transcriptional activat 97.6 0.0043 1.5E-07 47.2 14.6 138 34-184 192-339 (372)
212 3qww_A SET and MYND domain-con 97.6 0.00047 1.6E-08 54.1 9.6 87 132-218 310-410 (433)
213 3qwp_A SET and MYND domain-con 97.6 0.00069 2.4E-08 53.1 10.1 92 127-218 294-399 (429)
214 3mkq_A Coatomer beta'-subunit; 97.5 0.0028 9.7E-08 53.8 14.1 83 119-216 680-762 (814)
215 3mkq_A Coatomer beta'-subunit; 97.5 0.005 1.7E-07 52.3 15.0 47 130-182 662-708 (814)
216 3ly7_A Transcriptional activat 97.3 0.0045 1.5E-07 47.1 11.6 126 14-159 213-347 (372)
217 2kc7_A BFR218_protein; tetratr 97.3 0.00095 3.3E-08 40.2 6.6 58 7-66 7-65 (99)
218 3bee_A Putative YFRE protein; 97.3 0.0042 1.4E-07 37.2 9.2 68 152-220 3-73 (93)
219 2kc7_A BFR218_protein; tetratr 97.3 0.003 1E-07 38.0 8.5 57 127-184 7-64 (99)
220 3mkq_B Coatomer subunit alpha; 97.2 0.021 7.2E-07 38.5 12.9 130 43-216 12-141 (177)
221 1pc2_A Mitochondria fission pr 97.2 0.0013 4.3E-08 43.2 6.6 92 6-100 4-100 (152)
222 3bee_A Putative YFRE protein; 97.2 0.0057 2E-07 36.6 8.8 68 117-185 3-73 (93)
223 1wy6_A Hypothetical protein ST 97.1 0.022 7.7E-07 36.3 12.4 85 132-222 73-157 (172)
224 2v5f_A Prolyl 4-hydroxylase su 96.9 0.027 9.2E-07 34.3 10.7 66 119-184 4-75 (104)
225 1pc2_A Mitochondria fission pr 96.9 0.023 7.8E-07 37.3 10.1 86 135-224 13-103 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.8 0.013 4.5E-07 35.8 8.5 71 153-225 3-79 (104)
227 1wy6_A Hypothetical protein ST 96.7 0.056 1.9E-06 34.6 14.5 123 130-256 17-156 (172)
228 4h7y_A Dual specificity protei 96.7 0.051 1.8E-06 35.4 10.4 115 117-234 10-137 (161)
229 3mkq_B Coatomer subunit alpha; 96.6 0.076 2.6E-06 35.8 12.9 45 131-181 16-60 (177)
230 3u64_A Protein TP_0956; tetrat 96.4 0.067 2.3E-06 39.2 11.0 76 120-195 199-282 (301)
231 4gns_B Protein CSD3, chitin bi 96.3 0.058 2E-06 45.3 11.6 129 122-251 250-397 (754)
232 1nzn_A CGI-135 protein, fissio 96.2 0.055 1.9E-06 34.2 8.4 92 126-219 7-103 (126)
233 3u64_A Protein TP_0956; tetrat 96.2 0.021 7.2E-07 41.8 7.4 92 10-101 173-270 (301)
234 1v54_E Cytochrome C oxidase po 96.1 0.1 3.5E-06 31.3 9.1 63 170-233 25-87 (109)
235 1nzn_A CGI-135 protein, fissio 96.0 0.067 2.3E-06 33.8 8.2 82 170-253 16-102 (126)
236 4h7y_A Dual specificity protei 95.9 0.18 6.2E-06 32.9 10.9 100 154-255 12-124 (161)
237 4fhn_B Nucleoporin NUP120; pro 95.8 0.51 1.7E-05 42.1 15.6 206 38-251 814-1047(1139)
238 2y69_E Cytochrome C oxidase su 95.5 0.24 8.3E-06 31.5 9.1 63 170-233 68-130 (152)
239 2ff4_A Probable regulatory pro 95.2 0.19 6.4E-06 38.9 9.7 106 84-192 128-247 (388)
240 1v54_E Cytochrome C oxidase po 94.2 0.48 1.6E-05 28.5 9.1 69 129-198 18-87 (109)
241 3lvg_A Clathrin heavy chain 1; 93.6 0.00042 1.4E-08 54.3 -8.0 76 7-91 61-136 (624)
242 2y69_E Cytochrome C oxidase su 93.2 1 3.5E-05 28.7 9.1 63 135-198 68-130 (152)
243 3o48_A Mitochondria fission 1 93.1 1 3.6E-05 28.6 9.0 73 150-224 35-110 (134)
244 1zbp_A Hypothetical protein VP 93.0 1.9 6.4E-05 31.2 12.1 121 8-149 5-129 (273)
245 2wpv_A GET4, UPF0363 protein Y 92.7 2.3 8E-05 31.6 15.0 81 118-217 132-215 (312)
246 4fhn_B Nucleoporin NUP120; pro 92.5 5.6 0.00019 35.6 16.0 127 116-244 838-990 (1139)
247 2ff4_A Probable regulatory pro 92.5 2.9 9.9E-05 32.2 19.2 113 118-231 110-251 (388)
248 4b4t_R RPN7, 26S proteasome re 92.2 2.4 8.1E-05 33.2 11.1 97 122-218 133-236 (429)
249 1qsa_A Protein (soluble lytic 91.4 5.3 0.00018 33.0 22.2 213 35-253 101-347 (618)
250 3lvg_A Clathrin heavy chain 1; 91.0 8.6E-05 2.9E-09 58.0 -14.5 67 35-107 53-119 (624)
251 4b4t_P 26S proteasome regulato 90.9 4.9 0.00017 31.7 20.5 197 12-218 28-246 (445)
252 3ffl_A Anaphase-promoting comp 90.9 2.5 8.4E-05 28.1 9.0 112 127-251 27-148 (167)
253 4b4t_P 26S proteasome regulato 90.7 5.1 0.00017 31.6 18.4 191 50-252 30-245 (445)
254 2uwj_G Type III export protein 90.6 1.7 5.9E-05 26.0 6.8 88 132-228 18-105 (115)
255 2p58_C Putative type III secre 90.5 1.8 6.1E-05 26.0 7.5 88 132-228 19-106 (116)
256 2uwj_G Type III export protein 90.5 1.8 6.2E-05 25.9 7.2 77 170-254 21-97 (115)
257 1zbp_A Hypothetical protein VP 90.4 3.9 0.00013 29.6 9.6 113 128-253 5-128 (273)
258 2p58_C Putative type III secre 90.2 1.9 6.5E-05 25.9 7.8 79 169-255 21-99 (116)
259 4b4t_R RPN7, 26S proteasome re 89.9 5.9 0.0002 31.0 11.9 101 72-184 132-237 (429)
260 1y8m_A FIS1; mitochondria, unk 89.8 2.8 9.6E-05 27.1 11.0 71 152-224 36-109 (144)
261 3ffl_A Anaphase-promoting comp 89.8 3.1 0.00011 27.6 8.4 120 85-217 18-149 (167)
262 4ady_A RPN2, 26S proteasome re 88.9 11 0.00039 32.8 13.2 55 10-64 384-439 (963)
263 3o48_A Mitochondria fission 1 88.0 3.6 0.00012 26.2 9.9 67 118-184 38-107 (134)
264 4a1g_A Mitotic checkpoint seri 87.5 1.7 5.8E-05 28.4 5.6 55 53-107 82-137 (152)
265 3esl_A Checkpoint serine/threo 87.3 2.3 7.9E-05 29.3 6.4 59 49-107 92-151 (202)
266 4gns_B Protein CSD3, chitin bi 86.9 14 0.00046 31.5 18.7 52 129-181 346-397 (754)
267 3eiq_C Programmed cell death p 86.8 8.3 0.00028 29.4 9.8 95 157-252 219-319 (358)
268 3lpz_A GET4 (YOR164C homolog); 86.5 8.7 0.0003 28.9 18.6 112 73-213 37-159 (336)
269 2wvi_A Mitotic checkpoint seri 86.0 2.3 7.7E-05 28.3 5.6 56 53-108 77-133 (164)
270 3esl_A Checkpoint serine/threo 84.3 8.1 0.00028 26.6 9.5 75 68-155 74-150 (202)
271 1y8m_A FIS1; mitochondria, unk 82.5 7.7 0.00026 25.0 12.0 67 118-184 37-106 (144)
272 4ady_A RPN2, 26S proteasome re 81.3 27 0.00094 30.6 14.3 86 130-218 534-622 (963)
273 4aez_C MAD3, mitotic spindle c 80.4 3.6 0.00012 28.8 5.1 56 52-107 130-186 (223)
274 2wpv_A GET4, UPF0363 protein Y 80.0 16 0.00056 27.2 17.8 152 72-252 34-215 (312)
275 2b7e_A PRE-mRNA processing pro 79.3 3.7 0.00013 21.8 3.8 33 16-49 2-35 (59)
276 4ets_A Ferric uptake regulatio 77.9 8.2 0.00028 25.5 6.1 72 16-89 13-87 (162)
277 3txn_A 26S proteasome regulato 75.9 25 0.00087 27.2 16.2 25 39-63 22-46 (394)
278 2zu6_B Programmed cell death p 75.7 22 0.00076 26.4 10.1 87 7-97 10-102 (307)
279 2ijq_A Hypothetical protein; s 74.7 16 0.00053 24.2 8.5 58 125-183 38-103 (161)
280 2nsz_A Programmed cell death p 73.9 14 0.00047 23.3 6.2 78 157-235 9-88 (129)
281 3lpz_A GET4 (YOR164C homolog); 73.8 26 0.0009 26.4 18.1 82 117-217 133-214 (336)
282 2ion_A PDCD4, programmed cell 72.7 17 0.00058 23.7 8.7 68 123-191 12-81 (152)
283 4a1g_A Mitotic checkpoint seri 71.0 19 0.00065 23.5 9.6 73 68-156 65-137 (152)
284 2wvi_A Mitotic checkpoint seri 69.7 21 0.00073 23.6 9.4 73 68-156 60-132 (164)
285 3mv2_A Coatomer subunit alpha; 67.7 36 0.0012 25.5 10.1 28 124-151 211-238 (325)
286 2xig_A Ferric uptake regulatio 67.6 22 0.00076 23.0 7.7 62 144-206 16-77 (150)
287 2nsz_A Programmed cell death p 67.1 21 0.00071 22.5 9.9 66 123-189 10-77 (129)
288 2ion_A PDCD4, programmed cell 66.9 12 0.0004 24.5 4.8 96 157-253 11-112 (152)
289 2o03_A Probable zinc uptake re 66.8 20 0.00067 22.6 5.8 43 163-205 18-60 (131)
290 2ijq_A Hypothetical protein; s 66.6 25 0.00085 23.2 7.5 14 169-182 46-59 (161)
291 3eyy_A Putative iron uptake re 65.9 24 0.00081 22.7 6.9 35 171-205 33-67 (145)
292 1mzb_A Ferric uptake regulatio 65.7 23 0.00078 22.4 6.5 62 145-207 8-70 (136)
293 4ets_A Ferric uptake regulatio 65.2 26 0.00091 23.0 6.9 71 137-208 14-87 (162)
294 2w57_A Ferric uptake regulatio 64.8 26 0.00087 22.7 6.9 63 144-207 6-69 (150)
295 3qil_A Clathrin heavy chain 1; 64.1 3.5 0.00012 25.6 1.7 76 4-92 10-85 (125)
296 3mwm_A ZUR, putative metal upt 63.5 17 0.0006 23.1 5.1 49 159-207 17-65 (139)
297 2fe3_A Peroxide operon regulat 63.3 27 0.00091 22.4 7.3 61 145-206 12-72 (145)
298 2xig_A Ferric uptake regulatio 62.7 28 0.00097 22.5 8.2 62 179-241 16-77 (150)
299 3bu8_A Telomeric repeat-bindin 62.4 37 0.0013 23.7 7.5 49 136-184 88-143 (235)
300 3eyy_A Putative iron uptake re 61.9 29 0.00098 22.3 6.4 50 38-88 20-69 (145)
301 3eu9_A Huntingtin-interacting 61.8 36 0.0012 23.3 7.7 55 196-254 180-236 (240)
302 2fe3_A Peroxide operon regulat 61.7 29 0.00098 22.3 7.4 61 26-88 13-73 (145)
303 2d2s_A Exocyst complex compone 61.7 40 0.0014 23.9 9.0 90 126-218 24-119 (235)
304 3txn_A 26S proteasome regulato 60.2 58 0.002 25.2 15.6 166 6-182 25-208 (394)
305 1wdy_A 2-5A-dependent ribonucl 60.1 42 0.0014 23.7 7.8 79 165-248 155-239 (285)
306 3hra_A Ankyrin repeat family p 60.0 35 0.0012 22.7 7.0 19 207-225 155-173 (201)
307 2w57_A Ferric uptake regulatio 59.9 32 0.0011 22.2 7.2 62 179-241 6-68 (150)
308 2fu4_A Ferric uptake regulatio 59.7 21 0.00072 20.0 7.1 35 205-239 32-66 (83)
309 1mzb_A Ferric uptake regulatio 59.2 31 0.0011 21.8 7.5 61 180-241 8-69 (136)
310 3mwm_A ZUR, putative metal upt 58.8 21 0.00072 22.7 4.9 50 39-88 16-65 (139)
311 2o03_A Probable zinc uptake re 58.2 23 0.00079 22.2 4.9 49 40-88 14-62 (131)
312 3l6a_A Eukaryotic translation 57.3 41 0.0014 25.7 6.9 65 123-187 15-80 (364)
313 4b4t_S RPN3, 26S proteasome re 57.1 76 0.0026 25.7 10.2 65 120-184 231-299 (523)
314 3ygs_P Procaspase 9; apoptosis 56.7 18 0.00063 21.4 4.0 60 22-90 26-87 (97)
315 4gq2_M Nucleoporin NUP120; bet 55.4 1.1E+02 0.0038 27.0 11.6 53 41-98 815-867 (950)
316 3t8k_A Uncharacterized protein 55.1 44 0.0015 22.3 7.1 128 46-189 13-148 (186)
317 2r9g_A AAA ATPase, central reg 54.0 51 0.0017 22.7 11.1 61 126-187 17-85 (204)
318 2keb_A DNA polymerase subunit 53.3 33 0.0011 20.4 7.1 55 174-230 28-87 (101)
319 1ug3_A EIF4GI, eukaryotic prot 53.3 49 0.0017 24.9 6.8 132 8-144 19-165 (339)
320 2d2s_A Exocyst complex compone 53.1 58 0.002 23.1 9.4 30 154-183 90-119 (235)
321 1oai_A Nuclear RNA export fact 52.3 14 0.00046 19.6 2.6 21 15-35 35-55 (59)
322 3f3f_C Nucleoporin NUP85; stru 52.3 54 0.0018 26.8 7.0 54 189-244 515-568 (570)
323 4aez_C MAD3, mitotic spindle c 52.0 59 0.002 22.8 8.4 54 172-225 131-185 (223)
324 2r9g_A AAA ATPase, central reg 51.6 56 0.0019 22.5 11.3 56 166-222 25-85 (204)
325 2fu4_A Ferric uptake regulatio 51.5 30 0.001 19.3 7.0 63 144-207 6-69 (83)
326 4b4t_S RPN3, 26S proteasome re 51.3 96 0.0033 25.1 11.5 65 36-100 231-299 (523)
327 3bge_A Predicted ATPase; struc 51.3 56 0.0019 22.4 9.5 60 126-185 10-77 (201)
328 2f6m_A Suppressor protein STP2 50.6 17 0.00058 19.7 2.8 46 38-84 4-49 (65)
329 1ug3_A EIF4GI, eukaryotic prot 50.2 30 0.001 26.1 5.2 95 123-218 14-113 (339)
330 3jxi_A Vanilloid receptor-rela 50.2 26 0.00089 24.6 4.8 56 43-98 9-73 (260)
331 1wgl_A TOLL-interacting protei 48.3 30 0.001 18.3 3.8 24 47-70 34-57 (59)
332 3bge_A Predicted ATPase; struc 47.6 66 0.0022 22.1 10.2 38 167-204 19-56 (201)
333 3bu8_A Telomeric repeat-bindin 47.3 70 0.0024 22.4 7.7 24 126-149 120-143 (235)
334 3ctd_A Putative ATPase, AAA fa 46.5 71 0.0024 22.2 11.0 80 126-205 38-125 (213)
335 3ctd_A Putative ATPase, AAA fa 45.5 74 0.0025 22.1 10.4 61 166-226 46-111 (213)
336 3f3f_C Nucleoporin NUP85; stru 45.2 54 0.0018 26.8 6.0 27 73-99 518-544 (570)
337 1bpo_A Protein (clathrin); cla 45.2 1.2E+02 0.004 24.3 9.8 24 72-95 362-385 (494)
338 1wdy_A 2-5A-dependent ribonucl 44.7 79 0.0027 22.2 8.8 74 166-243 190-268 (285)
339 1ixm_A SPO0B, protein (sporula 44.2 37 0.0013 23.1 4.4 48 169-218 13-60 (192)
340 3mkr_B Coatomer subunit alpha; 43.1 1E+02 0.0035 23.1 11.4 28 124-151 202-229 (320)
341 3us6_A Histidine-containing ph 41.7 70 0.0024 20.8 10.8 48 135-183 70-121 (153)
342 3qil_A Clathrin heavy chain 1; 41.2 24 0.00081 22.0 2.7 52 157-211 34-85 (125)
343 2keb_A DNA polymerase subunit 39.9 59 0.002 19.4 6.2 57 138-196 27-88 (101)
344 3pvs_A Replication-associated 39.1 1.4E+02 0.0048 23.5 16.4 116 69-186 192-326 (447)
345 2cwy_A Hypothetical protein TT 38.3 61 0.0021 19.0 5.7 58 39-99 5-67 (94)
346 1uzc_A Hypothetical protein FL 37.7 52 0.0018 18.2 4.4 36 15-51 13-48 (71)
347 3eiq_C Programmed cell death p 37.2 1E+02 0.0034 23.5 6.2 65 191-256 218-284 (358)
348 3ltm_A Alpha-REP4; protein eng 36.7 95 0.0033 20.8 18.2 172 34-239 31-202 (211)
349 2bn5_A PSI; nuclear protein, s 36.3 34 0.0011 15.5 2.6 21 232-252 9-29 (33)
350 2zu6_B Programmed cell death p 35.2 64 0.0022 23.9 4.8 26 39-64 6-31 (307)
351 1k1a_A B-cell lymphoma 3-encod 32.0 1.2E+02 0.0041 20.6 8.6 25 44-68 14-38 (241)
352 2crb_A Nuclear receptor bindin 31.9 81 0.0028 18.6 4.4 24 192-215 17-40 (97)
353 2cos_A Serine/threonine protei 31.7 58 0.002 16.8 3.4 11 241-251 38-48 (54)
354 2p22_A Suppressor protein STP2 31.5 44 0.0015 22.4 3.0 48 36-84 111-158 (174)
355 2fv2_A RCD1 required for cell 31.4 78 0.0027 22.9 4.4 52 47-98 184-236 (268)
356 1zl8_A LIN-7; heterodimer, alp 30.5 21 0.00072 18.1 1.1 22 50-71 7-28 (53)
357 3t5v_B Nuclear mRNA export pro 30.2 99 0.0034 24.5 5.3 89 12-100 138-249 (455)
358 4fjo_A DNA repair protein REV1 30.2 88 0.003 18.5 4.1 48 15-62 10-59 (97)
359 3pvs_A Replication-associated 30.1 2E+02 0.0069 22.6 12.7 54 167-220 267-325 (447)
360 2p22_A Suppressor protein STP2 29.5 91 0.0031 20.9 4.3 28 158-185 114-141 (174)
361 1ixm_A SPO0B, protein (sporula 29.5 1.3E+02 0.0046 20.4 5.4 73 134-217 13-85 (192)
362 3kea_A K1L; tropism, ANK repea 29.5 1.6E+02 0.0053 21.1 8.6 83 11-105 7-89 (285)
363 2qq8_A TBC1 domain family memb 29.3 1.3E+02 0.0043 22.5 5.7 43 143-185 216-258 (334)
364 3vu7_H DNA repair protein REV1 28.9 96 0.0033 19.4 4.1 24 73-96 62-85 (124)
365 2ko4_A Mediator of RNA polymer 28.6 62 0.0021 18.3 2.8 29 221-249 32-60 (81)
366 2dod_A Transcription elongatio 28.5 87 0.003 17.9 5.9 40 12-52 12-51 (82)
367 2qfz_A TBC1 domain family memb 27.7 1.8E+02 0.006 21.8 6.3 74 176-249 230-310 (345)
368 3t5v_B Nuclear mRNA export pro 27.5 2.3E+02 0.0079 22.5 7.0 61 192-252 178-247 (455)
369 3kea_A K1L; tropism, ANK repea 26.9 1.7E+02 0.006 20.8 8.6 116 42-182 65-185 (285)
370 2qq8_A TBC1 domain family memb 25.5 51 0.0017 24.7 2.9 44 177-220 215-258 (334)
371 3lxu_X Tripeptidyl-peptidase 2 25.1 3.5E+02 0.012 25.2 8.2 87 15-105 1264-1350(1354)
372 1bpo_A Protein (clathrin); cla 24.2 2.8E+02 0.0095 22.2 9.8 91 122-214 363-453 (494)
373 1ya0_A SMG-7 transcript varian 23.9 2.8E+02 0.0097 22.3 8.5 66 15-83 167-232 (497)
374 3k1s_A PTS system, cellobiose- 23.6 1.3E+02 0.0045 18.3 7.7 25 231-255 85-109 (109)
375 1q02_A Sequestosome 1; helical 23.5 85 0.0029 16.1 4.5 36 211-248 12-47 (52)
376 4fke_A Aminopeptidase N; zinc 22.9 3.9E+02 0.013 23.5 13.6 89 125-218 691-786 (909)
377 2yru_A Steroid receptor RNA ac 22.5 1.4E+02 0.0049 18.4 7.8 64 156-219 20-90 (118)
378 4gq2_M Nucleoporin NUP120; bet 22.4 4.1E+02 0.014 23.5 10.5 108 126-239 816-950 (950)
379 2xvc_A ESCRT-III, SSO0910; cel 22.1 98 0.0034 16.3 3.4 17 240-256 38-54 (59)
380 1n3k_A Astrocytic phosphoprote 21.8 49 0.0017 20.9 1.9 36 54-90 41-76 (130)
381 2rpa_A Katanin P60 ATPase-cont 21.8 85 0.0029 17.7 2.7 25 194-218 16-40 (78)
382 3c1d_A Protein ORAA, regulator 21.6 1.7E+02 0.006 18.9 11.3 102 135-241 45-146 (159)
383 4b4t_O 26S proteasome regulato 21.3 2.8E+02 0.0097 21.3 9.9 57 126-182 82-154 (393)
384 1wxp_A THO complex subunit 1; 21.1 75 0.0026 19.2 2.6 46 169-216 55-100 (110)
385 2rg8_A Programmed cell death p 20.8 1.9E+02 0.0065 19.0 7.0 27 123-149 13-39 (165)
386 4fke_A Aminopeptidase N; zinc 20.6 4.4E+02 0.015 23.2 17.6 158 41-219 691-860 (909)
387 3ax2_A Mitochondrial import re 20.2 26 0.00088 19.6 0.3 14 44-57 25-38 (73)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.9e-37 Score=244.95 Aligned_cols=207 Identities=14% Similarity=0.200 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC---------cc
Q 047518 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR---------VS 88 (256)
Q Consensus 18 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 88 (256)
.+..+.+++.+.+....+...++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345566667666554233456889999999999999999999999999999999999999999998765 46
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
.|.++|++|.+.|+. ||..+|++||.+|++.|++++|..+|++|.+.|+.||..||+.+|.+|++.
T Consensus 88 ~A~~lf~~M~~~G~~--------------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 88 RGFDIFKQMIVDKVV--------------PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp HHHHHHHHHHHTTCC--------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 799999999998765 566778899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-34 Score=229.61 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH
Q 047518 53 DTVLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~ 131 (256)
..+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+. ||..+|+.||.+|+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~--------------pd~~tyn~Li~~c~ 72 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ--------------LSQYHYNVLLYVCS 72 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC--------------CCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------CCHhHHHHHHHHHH
Confidence 4456677778777766554 46889999999999999999999999998765 55667788888988
Q ss_pred hcCC---------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 132 KQGF---------VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 132 ~~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
+.+. +++|.++|++|...|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++
T Consensus 73 ~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 73 LAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152 (501)
T ss_dssp TCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH
Confidence 7654 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|++.|+
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998874
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.7e-24 Score=177.28 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=136.7
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
+.+.|++++|+++|+++.+.++. +..+|+.++.++.+.|++++|..+++.+.+.. +.+..+|..++..|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY--NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 44455555555555555554432 44445555555555555555555555554332 3345566666666666666666
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhh--------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~--------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
|.++|+++.+.. +.+..++..+.. ..+.+..+|+.++.+|.+.|++++|..+|+++.+.
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666665531 112223332221 22345566666666666666666666666666554
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
... +..+|+.++..|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 322 5566666666666666666666666666554 44555 5566666666666666666666666666543 33
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..+|..+..+|.+.|++++|.++++++.+
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 566666666666666666666666666654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=5.3e-24 Score=174.37 Aligned_cols=222 Identities=9% Similarity=-0.021 Sum_probs=171.7
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
.+.+.|++++|..+|+++.+..+ .+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRHP--EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT--TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34566777777777777776554 366677777777777777777777777776643 235667777777777777777
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhh--------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~--------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
+|+++|+++.+.+ +.+..++..+.. ..+.+..+|+.++..|.+.|++++|..+|+++.+
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777777642 223344433322 3356789999999999999999999999999987
Q ss_pred C----CCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047518 149 K----NVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222 (256)
Q Consensus 149 ~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (256)
. +..|+ ..+|..+..+|.+.|++++|...++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+.. +
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p 581 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-P 581 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-C
Confidence 6 66777 7899999999999999999999999999875 4578999999999999999999999999999863 4
Q ss_pred CCHHhHHHHHHHHH
Q 047518 223 PDAFTYNTLLDGFC 236 (256)
Q Consensus 223 ~~~~~~~~l~~~~~ 236 (256)
.+...+..+..+|.
T Consensus 582 ~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 582 NEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHh
Confidence 45667777666553
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=2.1e-20 Score=145.37 Aligned_cols=240 Identities=11% Similarity=0.081 Sum_probs=194.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..+...|++++|++.|+++.+..|. +...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|+
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYNPD--LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTT--CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34466778888888888888887654 56667778888888888888888888887763 3346778888888888888
Q ss_pred cchHHHHHHHHHhcCCCCch-hhHH--------------------hhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDV-VTFT--------------------SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~-~~~~--------------------~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (256)
+++|...|+++.+.. |+. ..+. ..+...+.+..++..+..+|.+.|++++|...|++
T Consensus 185 ~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887742 321 1111 11123345678899999999999999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047518 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225 (256)
Q Consensus 146 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 225 (256)
+.+.+.. +..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+.
T Consensus 263 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~ 339 (388)
T 1w3b_A 263 AIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFA 339 (388)
T ss_dssp HHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCH
T ss_pred HHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcH
Confidence 9987543 67789999999999999999999999999874 567889999999999999999999999999876 25568
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.++..+..+|.+.|++++|.+.++++.+.
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999999999999998764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=3.5e-20 Score=144.13 Aligned_cols=237 Identities=11% Similarity=0.062 Sum_probs=138.1
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
+...|++++|...++...+..|. +..+|..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 34456666666666666665543 55666666666666677777777666666542 2234456666666666666666
Q ss_pred HHHHHHHHHhcCCCCchhhHH---------------------hhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 90 GFVVLGRILRSCFTPDVVTFT---------------------SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~---------------------~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
|...|+++.+. .|+..... ..+...+.+..+|..+...+...|++++|...|+++.+
T Consensus 120 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 120 AVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666553 22221111 11112233455566666666666666666666665544
Q ss_pred CCCC---------------------------------CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 149 KNVK---------------------------------PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 149 ~~~~---------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
.++. .+..++..+...+...|++++|...++++.+.. +.+..+|..
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 276 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCN 276 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 3221 134455556666666666666666666666543 223455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..++.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666666666666666542 44566666666666666777777666666654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=9.7e-20 Score=144.16 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=105.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|+.+|+++.+..|. +..+|..+..++...|++++|...|+++.+.+ +.+..++..+..+|...|+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 44566778888888888888876554 67778888888888888888888888887764 3356677888888888888
Q ss_pred cchHHHHHHHHHhcCCCCch----hhHHhh--------------------------------hhhcCCCHHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDV----VTFTSL--------------------------------IKVCKPDAITYNTIIDGL 130 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~----~~~~~l--------------------------------l~~~~~~~~~~~~l~~~~ 130 (256)
+++|..+|+++.+. .|+. ..+..+ +...+.+..++..+..+|
T Consensus 110 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (450)
T 2y4t_A 110 LDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECF 187 (450)
T ss_dssp HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 88888888888764 2322 222111 112233444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.+.|++++|...|+.+..... .+..++..+...|...|++++|...++++..
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555544321 2344444455555555555555555554443
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=1.3e-20 Score=145.40 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=189.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|+..|+++.+..|. +..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..+|...|+
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcccc
Confidence 45567889999999999999998775 78899999999999999999999999998864 3467899999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGF 165 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 165 (256)
+++|...++++.+.. |+...... ........+..+...+...|++++|...|+++...... ++..++..+...+
T Consensus 149 ~~~A~~~~~~al~~~--p~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 149 QQDACEALKNWIKQN--PKYKYLVK---NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHHHHHHHHHHHHHC--HHHHCC----------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--ccchHHHh---hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 999999999998742 22111000 00012334556788999999999999999999887533 2578899999999
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 245 (256)
...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999874 4468899999999999999999999999998863 446889999999999999999999
Q ss_pred HHHHHHHh
Q 047518 246 ELFVSMES 253 (256)
Q Consensus 246 ~~~~~m~~ 253 (256)
..+++..+
T Consensus 302 ~~~~~al~ 309 (365)
T 4eqf_A 302 SNFLTALS 309 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=4.6e-22 Score=164.65 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKD---KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
-..+|++||++|++.|++++|..+|.+|.+ .|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 196 IMDELCKNGKM-DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 196 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999888766554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=1e-18 Score=138.26 Aligned_cols=240 Identities=12% Similarity=0.065 Sum_probs=189.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH---hhHHHH------
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTHSIL------ 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------ 77 (256)
+..+...|++++|+..|+++.+.+|. +..++..+...+.+.|++++|...|+++.+.. +.+. ..+..+
T Consensus 67 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 67 ATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH
Confidence 44566788999999999999887765 67788889999999999999999999988764 2233 444444
Q ss_pred ------HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhh--------------------hhhcCCCHHHHHHHHHHHH
Q 047518 78 ------INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL--------------------IKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 78 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------l~~~~~~~~~~~~l~~~~~ 131 (256)
...+...|++++|+.+++++.+.. +.+..++..+ +...+.+..+|..+..+|.
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444778888888888888887642 1122222222 2234567899999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHH------------HHHHhccCCHHHHHHHHHHHHHcCCCCc-----HHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSV------------IRGFCYANDWNEAKRLFIEMMDQGVQPN-----VVTFN 194 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~ 194 (256)
..|++++|...|+.+...... +...+..+ ...+...|++++|...++++.+.. |+ ...+.
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~ 299 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKE 299 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHH
Confidence 999999999999999876432 44444444 788999999999999999999863 44 45788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+..++.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|...++++.+.
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 89999999999999999999998753 457889999999999999999999999998764
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3.4e-19 Score=137.37 Aligned_cols=239 Identities=12% Similarity=0.047 Sum_probs=192.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|+..|+++.+..|. +..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 147 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 147 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 44567789999999999999987664 77889999999999999999999999998875 4477899999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchh----------------------------------hHHhhhhhcCC--CHHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVV----------------------------------TFTSLIKVCKP--DAITYNTIIDGL 130 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~----------------------------------~~~~ll~~~~~--~~~~~~~l~~~~ 130 (256)
+++|...++++.+..-..... .+...+...+. +..++..+...|
T Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 999999999998853221111 11111122233 578889999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHH
Q 047518 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 210 (256)
...|++++|...|+++..... .+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.
T Consensus 228 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 305 (368)
T 1fch_A 228 NLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAV 305 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999887643 367788899999999999999999999998764 346778899999999999999999
Q ss_pred HHHHHHHHCCC----------CCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 211 SLLDLMIQHGV----------RPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 211 ~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
..|+++.+... +....+|..+..+|...|++++|..++++
T Consensus 306 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99998875321 11267899999999999999999888753
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=6e-19 Score=133.82 Aligned_cols=241 Identities=13% Similarity=0.059 Sum_probs=160.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG- 85 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 85 (256)
+..+...|++++|+++|+++.+..|. +...+..++..+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence 34456679999999999999887765 56678788888899999999999999988764 345678888888899999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhh--------------------hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (256)
++++|...++++.+..-. +...+..+. ...+.+...+..+...|...|++++|...+++
T Consensus 106 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 899999999998875311 111111111 12233445555566666666666666666666
Q ss_pred HHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 146 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
..+.... +..++..+...+...|++++|...+++..+.. .+.+..++..+..++...|++++|...+++..
T Consensus 185 al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6655332 45566666666666677777776666666431 02234566666666667777777777776666
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.. +.+...+..+..+|.+.|++++|.+.+++..+
T Consensus 264 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 264 VLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred hhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 543 33555666666666667777777766665543
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=4.6e-19 Score=134.27 Aligned_cols=240 Identities=12% Similarity=0.030 Sum_probs=195.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|+.+|+++.+..|. +..++..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 44567789999999999999998765 77889999999999999999999999998874 4467889999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchh----------------------------------hHHhhhhhcCCCHHHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVV----------------------------------TFTSLIKVCKPDAITYNTIIDGLCK 132 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~----------------------------------~~~~ll~~~~~~~~~~~~l~~~~~~ 132 (256)
+++|...++++.+..-..... .+...+...+.+..++..+...|..
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 999999999998752111100 1112222345578889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 047518 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
.|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.
T Consensus 185 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999887643 367788899999999999999999999998864 34677889999999999999999999
Q ss_pred HHHHHHCCCCC-----------CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 213 LDLMIQHGVRP-----------DAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 213 ~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
++++.+..... +...+..+..++.+.|++++|..++++.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99887642111 4678889999999999999999887643
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.2e-18 Score=128.65 Aligned_cols=228 Identities=11% Similarity=0.029 Sum_probs=175.6
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC-ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
.+...|++++|...++++.+..|. +...|..+...+...| ++++|...|++..+.. +.+...|..+..++...|++
T Consensus 65 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 65 TLVELNKANELFYLSHKLVDLYPS--NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT--STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCH
Confidence 345678888888888888887664 6667888888888888 8888888888887764 33566788888888888888
Q ss_pred chHHHHHHHHHhcCCCCchhhH--------------------HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 88 SHGFVVLGRILRSCFTPDVVTF--------------------TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~--------------------~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
++|...++++.+..-.. ...+ ...+...+.+..++..+...+...|++++|...+++..
T Consensus 142 ~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGC-HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHHTTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88888888887753221 1111 11112345678899999999999999999999999987
Q ss_pred hCC--------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 148 DKN--------VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 148 ~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+.. .+....++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 642 13346788999999999999999999999999874 346788999999999999999999999998876
Q ss_pred CCCCCHHhHHHHHHHH-HhcCChh
Q 047518 220 GVRPDAFTYNTLLDGF-CLTGRVN 242 (256)
Q Consensus 220 ~~~~~~~~~~~l~~~~-~~~g~~~ 242 (256)
. +.+...+..+..++ ...|+.+
T Consensus 300 ~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 300 R-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp C-SCCHHHHHHHHHHHHTTTTC--
T ss_pred C-CCchHHHHHHHHHHHHHhCchh
Confidence 3 44677888888888 4556554
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=6.7e-21 Score=157.81 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=122.7
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..||+++|++|++.|++++|..+|.+|.+.+ -.++.||+.+||+||.+|++.|++++|.++|++|.+.|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~-----------~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR-----------QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH-----------HHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----------hcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4589999999999999999999998886531 01456788899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----
Q 047518 151 VKPNVVTYTSVIRGFCYANDW-NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD----- 224 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----- 224 (256)
+.||..||+++|.++++.|+. ++|.+++++|.+.|+.||..+|+.++..+.+.+ +++..+++ ..+..|+
T Consensus 196 ~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~ 270 (1134)
T 3spa_A 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPP 270 (1134)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCC
T ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcc
Confidence 999999999999999999984 789999999999999999999999987665543 33333333 2233333
Q ss_pred -HHhHHHHHHHHHhcC
Q 047518 225 -AFTYNTLLDGFCLTG 239 (256)
Q Consensus 225 -~~~~~~l~~~~~~~g 239 (256)
..+...|.+.|.+.+
T Consensus 271 ~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 271 PVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCTTTHHHHCCCS
T ss_pred cccchHHHHHHHccCC
Confidence 334444555555544
No 16
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=3.2e-18 Score=122.51 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=163.0
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++.++..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 69 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART------------ 69 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 677889999999999999999999999998874 4467889999999999999999999999998852
Q ss_pred hhcCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQ-----------GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
+.+...+..+..++... |++++|+..|++..+..+. +...+..+...+...|++++|+..+++..
T Consensus 70 ---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 70 ---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34667888899999999 9999999999999887543 67788899999999999999999999999
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 183 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+.. .+...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++.-
T Consensus 146 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 146 ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 887 688899999999999999999999999998863 4577889999999999999999999988754
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.4e-17 Score=127.02 Aligned_cols=227 Identities=10% Similarity=0.019 Sum_probs=165.6
Q ss_pred CCCCcCChhhHHH-HHHHHHHhCCCCC--CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 9 GDITTITPNEALC-IFDYMLRMHPSPP--PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 9 ~~~~~g~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.+.-.|++++|++ .|++.....+..| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 5566788888888 8887665544323 46778899999999999999999999999875 446788999999999999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-------------- 151 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 151 (256)
++++|...++++.+.. +.+..++..+...|...|++++|...++.+.....
T Consensus 113 ~~~~A~~~~~~al~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK---------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred CHHHHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence 9999999999998852 23455666667777777777777777666554321
Q ss_pred ---------------------------------CC---chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 152 ---------------------------------KP---NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 152 ---------------------------------~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
.| +..++..+...+...|++++|...++++.+.. +.+..++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 256 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 11 35677777888888888888888888887763 335677888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..++...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...+++..+
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888887653 44677788888888888888888888887764
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=7.3e-18 Score=129.18 Aligned_cols=239 Identities=11% Similarity=0.040 Sum_probs=191.1
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|..+...|++++|+..|+++.+..|. +..++..+...+...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcC
Confidence 355667899999999999999998775 77889999999999999999999999998764 336688999999999999
Q ss_pred CcchHHHHHHHHHhcCCCC---c-hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTP---D-VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~---~-~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
++++|...++++.+. .| + ...+..+.. ......+..+...+...|++++|...++.+.+... .+...+..+
T Consensus 86 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 160 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK--ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELR 160 (359)
T ss_dssp CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred ChHHHHHHHHHHHhc--CCcccChHHHHHHHHH--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 999999999999885 23 1 111111100 00011223346889999999999999999988754 377889999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH------------
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN------------ 229 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------ 229 (256)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 4577899999999999999999999999998753 33444333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+...+.+.|++++|...+++..+.
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2366788999999999999987753
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.9e-18 Score=125.54 Aligned_cols=219 Identities=15% Similarity=0.113 Sum_probs=183.8
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCC--CCC----HhhHHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL--FPD----LYTHSILIN 79 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~~ 79 (256)
.|..+...|++++|+..|++..+.. . +..+|..+...+...|++++|...++...+... .++ ..++..+..
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~-~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH-K--DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-C--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh-c--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 4556778899999999999999877 4 678899999999999999999999999876531 112 578899999
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
++...|++++|...++++.+.. |+ ...+.+.|++++|...++.+..... .+...+.
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~----------------~~-------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 143 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEH----------------RT-------ADILTKLRNAEKELKKAEAEAYVNP-EKAEEAR 143 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----------------CC-------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC----------------ch-------hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHH
Confidence 9999999999999999998852 22 2346667889999999999888643 2567788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
.+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...++...+.. +.+...+..+..++.+.|
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999874 3467889999999999999999999999998763 456888999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 047518 240 RVNHAKELFVSMES 253 (256)
Q Consensus 240 ~~~~a~~~~~~m~~ 253 (256)
++++|.+.+++..+
T Consensus 222 ~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 222 EYASALETLDAART 235 (258)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988765
No 20
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=1.1e-17 Score=123.59 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=187.7
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTHSILINCFC 82 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 82 (256)
..|..+...|++++|+..|++..+..|. +...+..+...+...|++++|+..+++..+.+..|+ ...|..+..++.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN--SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC--CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3455677899999999999999997765 667899999999999999999999999988432222 234889999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
..|++++|+..++++.+.. +.+..++..+...|...|++++|...|++..+... .+..++..+.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~ 149 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD---------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELG 149 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS---------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC---------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHH
Confidence 9999999999999998842 34567889999999999999999999999988743 3666777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHhHHHHH
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK---MDEASSLLDLMIQHG-VRPD------AFTYNTLL 232 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~ 232 (256)
..+...+++++|...++++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 34445569999999999999874 3346778888888888888 888999998887531 1133 25788899
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 047518 233 DGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..|...|++++|.+.+++..+.
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=3.6e-18 Score=131.64 Aligned_cols=225 Identities=9% Similarity=0.000 Sum_probs=180.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-H----------hhHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-L----------YTHS 75 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----------~~~~ 75 (256)
|..+...|++++|+..|+++.+..|. +..+|..+...+...|++++|...++++.+.. |+ . ..+.
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQPN--NLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHH
Confidence 44567789999999999999998765 78889999999999999999999999998753 32 1 2233
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 047518 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155 (256)
Q Consensus 76 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (256)
.+...+...|++++|..+++++.+.. |+ ..+..++..+...|...|++++|...|++..+... .+.
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~--p~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~ 247 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQN--GD-----------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDY 247 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHS--CS-----------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhC--cC-----------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 45788999999999999999998852 11 12577889999999999999999999999988754 368
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CC--------CC
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG---VR--------PD 224 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~--------~~ 224 (256)
.+|..+..+|...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+.. .. .+
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 326 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS 326 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhH
Confidence 899999999999999999999999999874 3458889999999999999999999999987531 01 13
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 225 AFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
...|..+..++...|+.+.+.++.++
T Consensus 327 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 327 GNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 56789999999999999998887654
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3.7e-17 Score=122.06 Aligned_cols=217 Identities=14% Similarity=0.112 Sum_probs=148.2
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTHSILINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 87 (256)
.|+..|+++.|+..++.. .+|+..++..+...+...++.+.|++.++++...+..| +...+..+..++...|++
T Consensus 43 ~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 43 AYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 344455555555444321 12344455555555555555555555555555444323 233444444555555555
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH---HHHHHH
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY---TSVIRG 164 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~ 164 (256)
++|++.+++ +.+...+..++..|.+.|++++|...|+.+.+.. |+.... ...+..
T Consensus 118 ~~Al~~l~~--------------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 118 DAALRTLHQ--------------------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSL 175 (291)
T ss_dssp HHHHHHHTT--------------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHH
Confidence 555555543 2466788888999999999999999999998874 343211 223344
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH-
Q 047518 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH- 243 (256)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~- 243 (256)
+...|++++|..+++++.+.. +.+...++.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+.++
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHH
Confidence 445689999999999999873 5678899999999999999999999999988763 4578889999999999999876
Q ss_pred HHHHHHHHHhc
Q 047518 244 AKELFVSMESM 254 (256)
Q Consensus 244 a~~~~~~m~~~ 254 (256)
+.++++++.+.
T Consensus 254 a~~~~~~~~~~ 264 (291)
T 3mkr_A 254 TNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 56888887653
No 23
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=2.5e-16 Score=120.63 Aligned_cols=242 Identities=11% Similarity=0.027 Sum_probs=178.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCC--CCHhhHHHH-------
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF--PDLYTHSIL------- 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------- 77 (256)
|..+...|++++|+..|+++.+..|. +...|..+...+...|++++|...++.+.+.... .+...+..+
T Consensus 44 a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 44 ATVFLAMGKSKAALPDLTKVIALKMD--FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence 34456789999999999999998765 6788999999999999999999999999887420 244455544
Q ss_pred -----HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhh--------------------hhhcCCCHHHHHHHHHHHHh
Q 047518 78 -----INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL--------------------IKVCKPDAITYNTIIDGLCK 132 (256)
Q Consensus 78 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------l~~~~~~~~~~~~l~~~~~~ 132 (256)
...+...|++++|...++++.+..- .+...+..+ +...+.+..++..+...+..
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5788899999999999999987531 122222111 11335567778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHH------------HHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----HHHHHH
Q 047518 133 QGFVDKAKELFLKMKDKNVKPNVVTYT------------SVIRGFCYANDWNEAKRLFIEMMDQGVQPNV----VTFNVI 196 (256)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l 196 (256)
.|++++|...|+...+.... +...+. .+...+...|++++|...++++.+.... +. ..+..+
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l 278 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERI 278 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 88888888888887765432 333322 2255577888888888888888876322 22 234557
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..++...|++++|...++...+.. +.+..++..+..+|...|++++|.+.+++..+.
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 778888999999999998888752 447788888888899999999999998887764
No 24
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.6e-18 Score=136.61 Aligned_cols=94 Identities=9% Similarity=0.080 Sum_probs=81.7
Q ss_pred ccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 4 KSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 4 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
...|..+.+.|++++|+..|+++.... |+..+|..+..++.+.|++++|...++++.+.+ +.+..+|..+..++..
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 345666788999999999999999876 477889999999999999999999999998875 3466789999999999
Q ss_pred cCCcchHHHHHHHHHhcC
Q 047518 84 MGRVSHGFVVLGRILRSC 101 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~ 101 (256)
.|++++|...|+++.+.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS
T ss_pred HhhHHHHHHHHHHHHhcC
Confidence 999999999999987754
No 25
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=2.8e-16 Score=114.74 Aligned_cols=201 Identities=12% Similarity=0.014 Sum_probs=172.0
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 5668888899999999999999999998764 3467788999999999999999999999988752
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+...+..+...|...|++++|...++++...+..| +...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 102 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 179 (252)
T 2ho1_A 102 -SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVAL 179 (252)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHH
Confidence 3356778888999999999999999999998732333 56778888899999999999999999998874 34678889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999998763 557778888999999999999999999988764
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=2e-17 Score=123.51 Aligned_cols=217 Identities=12% Similarity=0.082 Sum_probs=175.1
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
+-.|+++.|+..++.+....|. ........+..+|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4579999999998876543332 1133556678999999999999987654 2 356778899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 170 (256)
++.++++...+..|+ +...+..+..++...|++++|+..+++ +.+...+..+...+.+.|+
T Consensus 85 ~~~l~~ll~~~~~P~-------------~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 85 VAELDREMSRSVDVT-------------NTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHHHHHHHSCCCCS-------------CHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcccCCC-------------CHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 999999988654443 455677788999999999999999987 4578889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 171 WNEAKRLFIEMMDQGVQPNVVTF---NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
+++|...++++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.
T Consensus 146 ~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999874 443211 22334445568999999999999987 467889999999999999999999999
Q ss_pred HHHHHhc
Q 047518 248 FVSMESM 254 (256)
Q Consensus 248 ~~~m~~~ 254 (256)
+++..+.
T Consensus 223 l~~al~~ 229 (291)
T 3mkr_A 223 LQEALDK 229 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9997754
No 27
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=3.8e-17 Score=118.57 Aligned_cols=193 Identities=10% Similarity=0.003 Sum_probs=90.3
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|..+...|++++|+..|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp -------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc
Confidence 344455555555555555555543332 44445555555555555555555555554432 223445555555555555
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 106 ~~~~A~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAG---------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCL 169 (243)
T ss_dssp CHHHHHHHHHHHHHHT---------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 5555555555554421 12333444455555555555555555555544322 1344455555555
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555555555555442 22344555555555555555555555555544
No 28
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.4e-17 Score=130.34 Aligned_cols=227 Identities=12% Similarity=0.026 Sum_probs=194.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|...|+++.+..+. ..++..+...+...|++++|...++.+.+.. +.+..++..+..++...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 34566789999999999999987653 7789999999999999999999999998874 3467789999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+.+... .+..++..+...+.
T Consensus 320 ~~~A~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD---------------PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILT 383 (514)
T ss_dssp TTHHHHHHHHHHHTC---------------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHH
Confidence 999999999998752 23556788899999999999999999999987643 36678889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 167 YANDWNEAKRLFIEMMDQGVQ-PN----VVTFNVIMDELCK---NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
..|++++|...++++.+.... ++ ...+..+..++.. .|++++|...++.+.+.. +.+..++..+..+|.+.
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 999999999999998865211 11 3488899999999 999999999999998763 45678899999999999
Q ss_pred CChhHHHHHHHHHHhc
Q 047518 239 GRVNHAKELFVSMESM 254 (256)
Q Consensus 239 g~~~~a~~~~~~m~~~ 254 (256)
|++++|...+++..+.
T Consensus 463 g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 463 EDIDEAITLFEESADL 478 (514)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.78 E-value=3.6e-17 Score=132.21 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=151.2
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
..|..+.+.|++++|+..|+++.+..|. +..+|..+..++.+.|++++|++.++++.+.. +.+..++..+..++...
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 3456678899999999999999998875 78889999999999999999999999998875 44678899999999999
Q ss_pred CCcchHHHHHHHHHhcCC------------------------------------CCchh---------------------
Q 047518 85 GRVSHGFVVLGRILRSCF------------------------------------TPDVV--------------------- 107 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~------------------------------------~~~~~--------------------- 107 (256)
|++++|...|+.+....- .|+..
T Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 999999998853311100 00000
Q ss_pred -------------------------------------hHHhhhhhcCCC-------HHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 108 -------------------------------------TFTSLIKVCKPD-------AITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 108 -------------------------------------~~~~ll~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
.+..++...+.+ ..++..+...+...|++++|...|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 000011111112 123444555666666666666666
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
+...... |+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.
T Consensus 267 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 342 (537)
T 3fp2_A 267 QESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PE 342 (537)
T ss_dssp HHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC
Confidence 6666543 234555556666666666666666666665543 2244555555555666666666666665555432 22
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+...+..+..+|...|++++|.++++++.+
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555443
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.4e-16 Score=115.58 Aligned_cols=202 Identities=11% Similarity=0.058 Sum_probs=158.5
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.....|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------ 87 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD------------ 87 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------
Confidence 456678888999999999999999999998864 3467889999999999999999999999998752
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
+.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+
T Consensus 88 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 162 (243)
T 2q7f_A 88 ---SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEAR 162 (243)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ---CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHH
Confidence 34567888899999999999999999999988754 367788899999999999999999999999874 3467889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|.+.+++..+.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999998763 456888999999999999999999999998764
No 31
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=2e-15 Score=111.69 Aligned_cols=216 Identities=13% Similarity=-0.034 Sum_probs=187.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|..+...|++++|+..|++..+ + .+..++..+...+.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~--~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACD--L--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 3445677899999999999988 2 355778889999999 999999999999999875 6788889999999
Q ss_pred h----cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCc
Q 047518 83 K----MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 83 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
. .+++++|+.+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 145 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLK-----------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D 145 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCCCcccCHHHHHHHHHHHHHcC-----------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c
Confidence 9 999999999999998852 45677888899999 999999999999999876 5
Q ss_pred hHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHH
Q 047518 155 VVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 155 ~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 5677778888877 899999999999999874 45778888899999 999999999999999874 367
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 047518 227 TYNTLLDGFCL----TGRVNHAKELFVSMESMG 255 (256)
Q Consensus 227 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 255 (256)
.+..+...|.. .+++++|.+++++..+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 78888899998 999999999999988765
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=7e-17 Score=119.36 Aligned_cols=229 Identities=11% Similarity=-0.053 Sum_probs=181.6
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCC--CCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
.+......|++++|+..|+++.+..+. +.+..+|..+...+...|++++|...|+++.+.. +.+..+|..+..++..
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Confidence 455667789999999999999886432 1246778899999999999999999999998874 3467899999999999
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (256)
.|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+.. |+.......+.
T Consensus 90 ~~~~~~A~~~~~~al~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 152 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELD---------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLY 152 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC---------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC---------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 999999999999998852 3356788899999999999999999999998864 34444444555
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCC
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR---PDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 240 (256)
.+...|++++|...++...... +++...+ .++..+...++.++|...+....+.... .+..++..+..+|.+.|+
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 5677799999999998888763 3344444 3666777888888899888887654211 014678888899999999
Q ss_pred hhHHHHHHHHHHhc
Q 047518 241 VNHAKELFVSMESM 254 (256)
Q Consensus 241 ~~~a~~~~~~m~~~ 254 (256)
+++|...+++..+.
T Consensus 231 ~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 231 LDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988764
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=4.2e-17 Score=116.64 Aligned_cols=190 Identities=16% Similarity=0.054 Sum_probs=154.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc--
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM-- 84 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 84 (256)
|..+.+.|++++|+..|++..+..|. +...+..+...+.+.|++++|+..+++..+.. +.+...+..+..++...
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 88 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYR 88 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhh
Confidence 44567889999999999999997765 78889999999999999999999999998874 34677899999999999
Q ss_pred ---------CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 047518 85 ---------GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155 (256)
Q Consensus 85 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (256)
|++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..+.. .+.
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~al~~~---------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVN---------------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred hhhhhcccccCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 99999999999998851 3456788899999999999999999999998887 588
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
..+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 889999999999999999999999999874 3467888899999999999999999998764
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=7.8e-16 Score=110.20 Aligned_cols=202 Identities=8% Similarity=-0.047 Sum_probs=153.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|..+++++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 45667788888888888888888888887653 3356778888888888888888888888887641
Q ss_pred hcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 192 (256)
+.+..++..+...+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...
T Consensus 73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 149 (225)
T 2vq2_A 73 --PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPA 149 (225)
T ss_dssp --TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred --CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchH
Confidence 23556777788888888 88888888888887732222 35677778888888888888888888888763 335677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..+..++...|++++|...++.+.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888888888888888887653114667777777778888888888888887764
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=5.4e-16 Score=113.24 Aligned_cols=195 Identities=11% Similarity=0.032 Sum_probs=167.9
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|+..|+++....+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEIDPS--SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhH
Confidence 34566789999999999999987764 77889999999999999999999999998764 3467889999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|..+++++.+.+..| .+...+..+...+...|++++|...+++..+.... +...+..+...+.
T Consensus 121 ~~~A~~~~~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 186 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYP-------------ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHHTTCTTCT-------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCc-------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH
Confidence 999999999998732222 24557788899999999999999999999886533 6788899999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999998864 456778888999999999999999999999875
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=3.8e-16 Score=120.55 Aligned_cols=222 Identities=11% Similarity=0.027 Sum_probs=188.6
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC-hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
+...|++++|+..|+++++..|. +..+|+.+...+...|+ +++|+..|+++.+.. +-+...|..+..++...|+++
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHH
Confidence 44568999999999999998875 88899999999999997 999999999999875 336789999999999999999
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY- 167 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 167 (256)
+|+..|+++++. -+.+..+|..+..++.+.|++++|+..|+++.+.... +...|+.+..++..
T Consensus 184 eAl~~~~kal~l---------------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 184 QELEFIADILNQ---------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 247 (382)
T ss_dssp THHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---------------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 999999999985 2457788999999999999999999999999988654 77889999999988
Q ss_pred cCCHHHH-----HHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-
Q 047518 168 ANDWNEA-----KRLFIEMMDQGVQPNVVTFNVIMDELCKNG--KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG- 239 (256)
Q Consensus 168 ~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 239 (256)
.|..++| +..+++.+... +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhc
Confidence 5665777 58888888764 336778999888898888 689999999888 43 3557788899999998874
Q ss_pred --------ChhHHHHHHHHH-Hh
Q 047518 240 --------RVNHAKELFVSM-ES 253 (256)
Q Consensus 240 --------~~~~a~~~~~~m-~~ 253 (256)
..++|+++++++ .+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHH
Confidence 258999999998 54
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=1.4e-15 Score=108.84 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=167.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-C
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM-G 85 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 85 (256)
|..+...|++++|+..|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+... |
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC
Confidence 44567789999999999999997764 67789999999999999999999999998764 34677899999999999 9
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
++++|...++++.+.+..| .+...+..+..++...|++++|...+.++.+.... +...+..+...+
T Consensus 92 ~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 157 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYP-------------TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTK 157 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCS-------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCc-------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHH
Confidence 9999999999998832222 23567888899999999999999999999876533 578889999999
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
...|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999988743256777888888889999999999999998764
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=1.1e-15 Score=123.54 Aligned_cols=226 Identities=13% Similarity=0.035 Sum_probs=189.3
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..+...|++++|+..|++..+..| +..+|..+...+...|+++.|...++.+.+.. +.+..+|..+...+...|++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHP---TPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC---CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 445678999999999999998764 46788999999999999999999999998764 34678899999999999999
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (256)
++|...++++.+.. +.+...+..+..+|...|++++|...++.+.+... .+...+..+...+..
T Consensus 327 ~~A~~~~~~a~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN---------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHHHHHC---------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 99999999998852 23456788899999999999999999999988753 367788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047518 168 ANDWNEAKRLFIEMMDQGV-----QPNVVTFNVIMDELCKN----------GKMDEASSLLDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 232 (256)
.|++++|...++++.+... ......+.....++... |++++|...|+...+.. +.+...+..+.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 469 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLA 469 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 9999999999999886421 11222344555677777 99999999999998763 45778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 047518 233 DGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+|.+.|++++|.+.+++..+.
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999988753
No 39
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.6e-14 Score=108.81 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=178.4
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-------cCCh-------HHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-------NKHY-------DTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
++|..+|++.....|. +...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 7899999999997765 77889888887763 5886 899999999988311335668999999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI-TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
+.|++++|..+|+++++. .| .+.. +|..++..+.+.|++++|..+|++..+... ++...|...
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~ 174 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--ED-------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTA 174 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SS-------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cc-------------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 999999999999999984 22 2333 788899999999999999999999998753 345555544
Q ss_pred HHHH-hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHh
Q 047518 162 IRGF-CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRP--DAFTYNTLLDGFCL 237 (256)
Q Consensus 162 i~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~ 237 (256)
.... ...|++++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4332 23799999999999998763 3467889999999999999999999999999863 454 46788899999999
Q ss_pred cCChhHHHHHHHHHHhc
Q 047518 238 TGRVNHAKELFVSMESM 254 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~~ 254 (256)
.|+.++|..+++++.+.
T Consensus 254 ~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 254 IGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988753
No 40
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=4.5e-17 Score=125.36 Aligned_cols=207 Identities=9% Similarity=0.022 Sum_probs=85.2
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4566888888888871 224788888888888888888888854 246678888888888888888888
Q ss_pred HHHHHHHhcCCCCchhhHHhhhh--------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIK--------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (256)
.+++...+. .+++.+...++. .-.|+..+|..+...|...|.+++|...|..+ ..
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp -----------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 877766664 222333322222 12467779999999999999999999999977 37
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHH
Confidence 899999999999999999999988 2778999999999999999999665543 23344556678899999
Q ss_pred cCChhHHHHHHHHHHh
Q 047518 238 TGRVNHAKELFVSMES 253 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~ 253 (256)
.|++++|..+++....
T Consensus 220 ~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 220 RGYFEELITMLEAALG 235 (449)
T ss_dssp TTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999987653
No 41
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.72 E-value=7.5e-16 Score=122.75 Aligned_cols=216 Identities=9% Similarity=-0.054 Sum_probs=182.4
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY-DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 93 (256)
.+++++..++......+ .+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35667777776655443 4778899999999999999 99999999998874 33578999999999999999999999
Q ss_pred HHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 047518 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ---------GFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (256)
|+++.+. .|+...+..+..+|... |++++|...|++..+.... +...|..+..+
T Consensus 160 ~~~al~~----------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 222 (474)
T 4abn_A 160 FSGALTH----------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNA 222 (474)
T ss_dssp HHHHHTT----------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHhh----------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 9999985 24456788889999999 9999999999999887543 67889999999
Q ss_pred Hhcc--------CCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 165 FCYA--------NDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 165 ~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
|... |++++|...+++..+.... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..+
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~ 301 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9988 9999999999999986321 378899999999999999999999999998763 4467788999999
Q ss_pred HHhcCChhHHHHHHHHH
Q 047518 235 FCLTGRVNHAKELFVSM 251 (256)
Q Consensus 235 ~~~~g~~~~a~~~~~~m 251 (256)
+...|++++|++.+.++
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998765443
No 42
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=3.7e-14 Score=107.23 Aligned_cols=201 Identities=7% Similarity=-0.060 Sum_probs=151.2
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------- 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------
Confidence 45667888999999999999999999998764 3467788999999999999999999999998852
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------------------------------
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV------------------------------------------- 151 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------- 151 (256)
+.+..++..+...|...|++++|...++++.....
T Consensus 86 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 86 --PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 22344555555666666666666665555443211
Q ss_pred -----CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 152 -----KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 152 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..
T Consensus 164 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 241 (327)
T 3cv0_A 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR 241 (327)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 1245667777777888888888888888887763 3456778888888888888888888888877653 44677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+..+..+|...|++++|.+.+++..+
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 788888888888888888888877654
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.69 E-value=3.7e-14 Score=98.51 Aligned_cols=167 Identities=10% Similarity=-0.008 Sum_probs=145.3
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+..+|..+..+|...|++++|+..|++.++.. +.+..++..+..+|.+.|++++|...+......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66789999999999999999999999998752 346778899999999999999999999998877
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
... +...+..+...+...++++.+...+.+..... +.+...+..+..++...|++++|.+.|++..+.. +.+..+|.
T Consensus 69 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 145 (184)
T 3vtx_A 69 DTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQ 145 (184)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHH
Confidence 544 66777788888899999999999999998874 4467888999999999999999999999998763 55788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+..+|.+.|++++|++.|++..+.
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999988764
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=2e-13 Score=100.86 Aligned_cols=193 Identities=9% Similarity=-0.019 Sum_probs=168.6
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCchhhH
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----MGRVSHGFVVLGRILRSCFTPDVVTF 109 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (256)
.+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|..+|++..+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 366778889999999999999999999998843 55788889999999 999999999999998863
Q ss_pred HhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHH
Q 047518 110 TSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEM 181 (256)
Q Consensus 110 ~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~ 181 (256)
+...+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|...+++.
T Consensus 73 ---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 73 ---------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp ---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 45677888899999 999999999999998875 67788888899988 99999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 047518 182 MDQGVQPNVVTFNVIMDELCK----NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMES 253 (256)
Q Consensus 182 ~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 253 (256)
.+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+
T Consensus 141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 9875 56678888888888 999999999999999874 56788889999999 9999999999998876
Q ss_pred cC
Q 047518 254 MG 255 (256)
Q Consensus 254 ~g 255 (256)
.|
T Consensus 215 ~~ 216 (273)
T 1ouv_A 215 LE 216 (273)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.5e-14 Score=105.62 Aligned_cols=194 Identities=10% Similarity=0.031 Sum_probs=164.7
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
...|..+...+...|++++|...|++..+.. .+..++..+..++...|++++|...++++.+.. |+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~---------- 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--RE---------- 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cc----------
Confidence 4568889999999999999999999998887 678899999999999999999999999988741 10
Q ss_pred cCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH
Q 047518 116 CKPD----AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191 (256)
Q Consensus 116 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 191 (256)
..++ ..++..+...|...|++++|...|++..... |+. ..+...|++++|...++.+.... +.+..
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 140 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAE 140 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHH
Confidence 0011 5678899999999999999999999998864 342 34566789999999999999863 33567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|.+.+++..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88899999999999999999999998763 457889999999999999999999999988754
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=2e-15 Score=111.56 Aligned_cols=217 Identities=12% Similarity=-0.002 Sum_probs=167.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|+..|+++....|. +..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhcc
Confidence 44567789999999999999998765 77889999999999999999999999998864 3367889999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...++++.+.. |+.......+..+...|++++|...+........ ++...+. ++..+.
T Consensus 127 ~~~A~~~~~~a~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~~~~~~ 188 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDD----------------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGWN-IVEFYL 188 (275)
T ss_dssp HHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHHH-HHHHHT
T ss_pred HHHHHHHHHHHHHhC----------------CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHHH-HHHHHH
Confidence 999999999998852 2222233344455677999999999988776533 3444444 677778
Q ss_pred ccCCHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQ---PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (256)
..++.++|...++........ .+...+..+..++...|++++|...|++..+.. |+. +.....++...|++++
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~ 264 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQ 264 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHh
Confidence 888899999999988754211 125788999999999999999999999999763 422 2333556778888888
Q ss_pred HHHHH
Q 047518 244 AKELF 248 (256)
Q Consensus 244 a~~~~ 248 (256)
|++.+
T Consensus 265 a~~~~ 269 (275)
T 1xnf_A 265 DQDDL 269 (275)
T ss_dssp C----
T ss_pred hHHHH
Confidence 88765
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=5.2e-14 Score=97.76 Aligned_cols=167 Identities=10% Similarity=0.054 Sum_probs=144.4
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
++.+|..+...+.+.|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+.......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------------- 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------------- 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------
Confidence 56789999999999999999999999998774 3467789999999999999999999999887742
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+...+..+...+...++++.|...+......... +...+..+...+...|++++|+..+++..+.. +.+..+|.
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 145 (184)
T 3vtx_A 70 --TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQ 145 (184)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred --chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHH
Confidence 345667778888999999999999999998876543 67788889999999999999999999999874 34678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+..++.+.|++++|.+.|++..+.
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999875
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.1e-14 Score=109.45 Aligned_cols=211 Identities=14% Similarity=0.087 Sum_probs=164.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhC-------CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-------GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|..+++++.+...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----- 100 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE----- 100 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Confidence 3566888999999999999999999998763 2233456788899999999999999999999876410
Q ss_pred hHHhhh-hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCchHHHHHHHHHHhccCCHHHHHHHHH
Q 047518 108 TFTSLI-KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------NV-KPNVVTYTSVIRGFCYANDWNEAKRLFI 179 (256)
Q Consensus 108 ~~~~ll-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~ 179 (256)
... ...+....++..+...|...|++++|...+++..+. +. +....++..+...+...|++++|...++
T Consensus 101 ---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 101 ---KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp ---HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ---HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000 001123457888999999999999999999988764 22 2245678888899999999999999999
Q ss_pred HHHHc------CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---------------------------------
Q 047518 180 EMMDQ------GVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMIQH--------------------------------- 219 (256)
Q Consensus 180 ~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------------------------- 219 (256)
++.+. +..| ...++..+..++...|++++|...++++.+.
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 98864 2123 3557888999999999999999999988752
Q ss_pred ---------------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 220 ---------------GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 220 ---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+....++..+..+|.+.|++++|.+++++..+
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122345788899999999999999999998765
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.8e-13 Score=100.83 Aligned_cols=203 Identities=12% Similarity=0.104 Sum_probs=164.4
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
|...+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.+.+ ++.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------- 70 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NAT-------- 70 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTT--------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--Cch--------
Confidence 34457778889999999999999999998874 2355688999999999999999999999999843 221
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
......|..+...|...|++++|...|+...+.... +..++..+...|...|++++|...+++..+.. +.+...+.
T Consensus 71 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~ 146 (272)
T 3u4t_A 71 --KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFY 146 (272)
T ss_dssp --TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHH
T ss_pred --hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHH
Confidence 123456888999999999999999999999887543 66789999999999999999999999998873 34567777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHh
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR---VNHAKELFVSMES 253 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~ 253 (256)
.+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 77734555669999999999998863 4457788888888888888 8888888887664
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=6.8e-15 Score=115.01 Aligned_cols=239 Identities=11% Similarity=0.056 Sum_probs=165.0
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHhhC----CC-CCCHhhHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPP--VSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GL-FPDLYTHSILI 78 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 78 (256)
.|..+...|++++|+..|+++.+..+..+. ..+|..+...+...|++++|...+++..+. +. +....++..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 345567889999999999999998654111 146888999999999999999999987543 21 22346788899
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC-----------------HHHHHH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF-----------------VDKAKE 141 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~ 141 (256)
..|...|++++|...++++.+...... ..+....++..+...|...|+ +++|..
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLG---------DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHT---------CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 999999999999999998876310000 011223466777778888888 888888
Q ss_pred HHHHHHhC----CC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHhcCChhHHHH
Q 047518 142 LFLKMKDK----NV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PN----VVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 142 ~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
.+.+.... +. .....++..+...+...|++++|...+++..+.... ++ ..++..+..++...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 77765432 11 112346677777788888888888888877643100 11 2366777778888888888888
Q ss_pred HHHHHHHCC----CC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 212 LLDLMIQHG----VR-PDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 212 ~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+++..+.. .. ....++..+...|...|++++|..++++..+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887765421 00 1145667777778888888888887776653
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=2.9e-13 Score=104.54 Aligned_cols=197 Identities=9% Similarity=0.054 Sum_probs=169.4
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-cchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR-VSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
...|..+...+...|++++|+..+++..+.. +-+..+|..+..++...|+ +++|+..|+++++..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------------- 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------------- 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------------
Confidence 4568888899999999999999999998874 3367889999999999997 999999999999852
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+..+|..+..++...|++++|+..|+++.+.... +..+|..+..++...|++++|+..++++++.. +-+...|+
T Consensus 163 --P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~ 238 (382)
T 2h6f_A 163 --PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWN 238 (382)
T ss_dssp --TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHH
T ss_pred --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHH
Confidence 446778999999999999999999999999988654 78899999999999999999999999999875 34788999
Q ss_pred HHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHH
Q 047518 195 VIMDELCK-NGKMDEA-----SSLLDLMIQHGVRPDAFTYNTLLDGFCLTG--RVNHAKELFVSM 251 (256)
Q Consensus 195 ~ll~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m 251 (256)
.+..++.. .|..++| ...+++..... +-+...|..+...+...| ++++|++.++++
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 99999999 6665887 48888888753 446778999988898888 689999988876
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=1.9e-14 Score=114.69 Aligned_cols=190 Identities=11% Similarity=0.008 Sum_probs=164.3
Q ss_pred CCCCCCCcCCh-hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 6 SGEGDITTITP-NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 6 ~~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
.|..+...|++ ++|+..|++..+..|. +...|..+...|.+.|++++|...|++..+. .|+...+..+..++...
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPE--LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQL 183 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHh
Confidence 34566788999 9999999999998775 7889999999999999999999999999987 46778999999999999
Q ss_pred ---------CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 047518 85 ---------GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ--------GFVDKAKELFLKMK 147 (256)
Q Consensus 85 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 147 (256)
|++++|+..++++.+.. +.+...|..+..+|... |++++|...|++..
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al 248 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMD---------------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE 248 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 99999999999998852 34677888999999998 99999999999998
Q ss_pred hCCCC--CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047518 148 DKNVK--PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215 (256)
Q Consensus 148 ~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (256)
+.... -+...|..+..+|...|++++|...+++..+.. +.+...+..+..++...|++++|...+..
T Consensus 249 ~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 86431 377889999999999999999999999999874 33567888899999999999988876543
No 53
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=3.8e-14 Score=109.96 Aligned_cols=234 Identities=11% Similarity=-0.018 Sum_probs=175.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCC----CcccHHHHHHHHHccCChHHHHHHHHHHhhCC--C---C-CCHhhHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPP----PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--L---F-PDLYTHSI 76 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~ 76 (256)
|..+...|++++|+..|++..+.....+ ...++..+...+...|+++.|...+++..+.- . . ....++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4456678999999999999987522112 34678899999999999999999999876531 1 1 12357888
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NV 151 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 151 (256)
+..+|...|++++|...+++..+..-. ++. .....++..+...|...|++++|...+++..+. +.
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQP----------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998764110 000 112347888999999999999999999988762 23
Q ss_pred -CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCC
Q 047518 152 -KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPNVVTFNVIMDELCKNGK---MDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 152 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~ 223 (256)
+....++..+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 335677889999999999999999999998753 112223345678888888998 66666666654 3233
Q ss_pred -CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 -DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
....+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334677889999999999999999998764
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.58 E-value=3.5e-13 Score=111.92 Aligned_cols=166 Identities=11% Similarity=0.040 Sum_probs=127.1
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+..+|+.+..++.+.|++++|++.|++.++. .+.+..+|..+..+|.+.|++++|+..|++..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888888888888888888888887774 1335667788888888888888888888888776
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
... +..+|..+..++...|++++|++.+++..+.. +-+...|..+..++...|++++|+..|++..+.. +-+...+.
T Consensus 73 ~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~ 149 (723)
T 4gyw_A 73 SPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYC 149 (723)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHh
Confidence 433 56778888888888888888888888888764 2356778888888888888888888888887753 33567788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+..++...|++++|.+.+++..+
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHH
Confidence 888888888888888887777654
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.58 E-value=6.7e-13 Score=91.81 Aligned_cols=165 Identities=17% Similarity=0.107 Sum_probs=141.1
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 72 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---------------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3467778888899999999999998877641 3456778889999999999999999999988764
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (256)
. .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..
T Consensus 73 ~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 149 (186)
T 3as5_A 73 P-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRA 149 (186)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHH
Confidence 3 367788889999999999999999999998874 4567888999999999999999999999998763 456788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 047518 231 LLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 231 l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+...+...|++++|.+.+++..+
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=3.2e-13 Score=112.11 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=146.1
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.++.+|+.+...+.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|+..|++.++..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------------ 73 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------------ 73 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 356789999999999999999999999998874 3356789999999999999999999999998852
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
+.+..+|..+..+|...|++++|+..|++..+.... +..+|..+..+|...|++++|+..+++..+.. +-+...+
T Consensus 74 ---P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~ 148 (723)
T 4gyw_A 74 ---PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAY 148 (723)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 345778999999999999999999999999887543 67889999999999999999999999999874 3357789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+..++...|++++|.+.++++.+
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 57
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=3.5e-12 Score=103.14 Aligned_cols=218 Identities=11% Similarity=0.082 Sum_probs=172.9
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-------cCChH-------HHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-------NKHYD-------TVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
+++..+|++.....|. +...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.
T Consensus 255 ~~a~~~y~~al~~~p~--~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3677899998887664 77889988888875 68987 89999999986322345788999999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA-ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
+.|++++|..+|+++++. .| .+. ..|..++..+.+.|++++|..+|++..+... .+...|...
T Consensus 333 ~~g~~~~A~~~~~~al~~--~p-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~ 396 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAI--ED-------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTA 396 (530)
T ss_dssp HTTCHHHHHHHHHHHHHS--SS-------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHH
T ss_pred hcCCHHHHHHHHHHHhCc--cc-------------cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHH
Confidence 999999999999999984 22 122 4788888999999999999999999987632 233333332
Q ss_pred HHH-HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHh
Q 047518 162 IRG-FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRP--DAFTYNTLLDGFCL 237 (256)
Q Consensus 162 i~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~ 237 (256)
... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+.....
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 222 346899999999999998763 3467889999999999999999999999999863 223 24478888888888
Q ss_pred cCChhHHHHHHHHHHh
Q 047518 238 TGRVNHAKELFVSMES 253 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~ 253 (256)
.|+.+.+.++.+++.+
T Consensus 476 ~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 476 IGDLASILKVEKRRFT 491 (530)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 58
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.57 E-value=6.4e-14 Score=108.02 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=91.5
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|.++.+.|++++|++.|.+. +|...|..++..+...|++++|+++++..++. .+++.+.+.++.+|.+.|
T Consensus 38 La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 38 LAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC
Confidence 456666666677776666442 34446666666666666666666655554442 223344444444455444
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhc------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
++.++.++++ .|+..++..+...+ -.....|..++.++.+.|++++|.+.+.++ .
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------~ 175 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------N 175 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------T
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc------C
Confidence 4444444332 12222222221100 001135889999999999999999999998 2
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
++.+|..++.+|...|+++.|......+. ..|+ -...++..|.+.|++++|..+++...... +-....|+.+..
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~i 249 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 249 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHH
Confidence 78899999999999999999966555422 2333 35578899999999999999999988654 446677888777
Q ss_pred HHHhc
Q 047518 234 GFCLT 238 (256)
Q Consensus 234 ~~~~~ 238 (256)
+|++-
T Consensus 250 l~~ky 254 (449)
T 1b89_A 250 LYSKF 254 (449)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 77764
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=1.3e-12 Score=90.36 Aligned_cols=166 Identities=16% Similarity=0.069 Sum_probs=142.4
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------- 72 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 3457778889999999999999999988764 3467788999999999999999999999988752
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
+.+...+..+...+...|++++|...++.+..... .+...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 73 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 149 (186)
T 3as5_A 73 -PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRA 149 (186)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHH
Confidence 34567788889999999999999999999887643 367788889999999999999999999999874 446788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+...+...|++++|...++...+.
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999988753
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=113.18 Aligned_cols=238 Identities=11% Similarity=0.061 Sum_probs=165.6
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHhhC----CCCC-CHhhHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPP--VSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFP-DLYTHSILI 78 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~ 78 (256)
.|..+...|++++|+..|++..+..+..+. ..+|..+...+...|+++.|...+++.... +..| ...++..+.
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 355667889999999999999998664221 356888999999999999999999986443 2222 245788889
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC--------------------HH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF--------------------VD 137 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~--------------------~~ 137 (256)
..+...|++++|...+++..+..-. ++. .....++..+...|...|+ ++
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDK----------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccc----------cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 9999999999999999988763100 000 0113466777788888888 88
Q ss_pred HHHHHHHHHHhC----CCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHHhcCChh
Q 047518 138 KAKELFLKMKDK----NVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-QPN----VVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 138 ~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~ 207 (256)
+|...+...... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888887765432 111 1234667777778888888888888887764310 111 236777777888888888
Q ss_pred HHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 208 EASSLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 208 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...+++..+. +..+ ...++..+...|...|++++|.+.+++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 888888776532 1111 144667777788888888888888776653
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.8e-12 Score=97.54 Aligned_cols=184 Identities=12% Similarity=0.055 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHHH-hCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-Hh-hHHHHHHHHHhcCCcchHHH
Q 047518 16 PNEALCIFDYMLR-MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LY-THSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 16 ~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~ 92 (256)
+++|..+|++..+ ..|. +...|..++..+.+.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..
T Consensus 80 ~~~A~~~~~rAl~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 80 SDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHTTTTTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHH
Confidence 3999999999988 4553 6778999999999999999999999999985 444 33 89999999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL-CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 171 (256)
+|++.++.. | .+...|....... ...|++++|..+|+...+... -+...|..++..+.+.|+.
T Consensus 156 ~~~~a~~~~--p-------------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~ 219 (308)
T 2ond_A 156 IFKKAREDA--R-------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNED 219 (308)
T ss_dssp HHHHHHTST--T-------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhcC--C-------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCH
Confidence 999998852 2 2233444333332 237999999999999887643 3678899999999999999
Q ss_pred HHHHHHHHHHHHcC-CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 172 NEAKRLFIEMMDQG-VQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 172 ~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
++|..+|++..... ..| ....|..++....+.|+.+.|..+++++.+.
T Consensus 220 ~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 220 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999863 354 4678999999999999999999999999874
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=2.2e-14 Score=108.61 Aligned_cols=237 Identities=11% Similarity=0.070 Sum_probs=156.9
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHhhC----CCCC-CHhhHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPP--VSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFP-DLYTHSILI 78 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~ 78 (256)
.|..+...|++++|+..|+++.+..+..+. ...+..+...+...|+++.|...+++..+. +..| ...++..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 355667899999999999999998654111 357888999999999999999999987543 2122 245788889
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC--------------------HH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF--------------------VD 137 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~--------------------~~ 137 (256)
..+...|++++|...+++..+.... ++. .....++..+...|...|+ ++
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDK----------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCc----------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 9999999999999999988763110 010 0113356666777777777 77
Q ss_pred HHHHHHHHHHhC----CC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHHhcCChh
Q 047518 138 KAKELFLKMKDK----NV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GV-QPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 138 ~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~ 207 (256)
+|...+.+.... +. .....++..+...+...|++++|...+++..+. +. .....++..+...+...|+++
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 777777665431 11 112345666667777777777777777776532 10 011235666677777777777
Q ss_pred HHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 208 EASSLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 208 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777777766532 1000 13456666677777777777777776654
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=1.8e-13 Score=102.65 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=157.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC------CC-CCCHh
Q 047518 7 GEGDITTITPNEALCIFDYMLRM-------HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST------GL-FPDLY 72 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~ 72 (256)
+..+...|++++|+..|+++.+. ... ....++..+...+...|++++|...+++..+. +. +....
T Consensus 34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 44567889999999999998874 221 35567889999999999999999999998654 22 22356
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh-hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-- 149 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 149 (256)
++..+...+...|++++|..+++++.+.... .. ...+.....+..+...+...|++++|..++++....
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREK--------VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH--------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999998874100 00 000123456788899999999999999999998764
Q ss_pred ----CCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHc----------------------------------------
Q 047518 150 ----NVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---------------------------------------- 184 (256)
Q Consensus 150 ----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------------------------- 184 (256)
+..| ...++..+...+...|++++|...++++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2122 3457888899999999999999999998853
Q ss_pred --------CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 185 --------GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 185 --------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122456788899999999999999999998875
No 64
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.55 E-value=4.2e-11 Score=95.90 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=145.5
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK---- 83 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 83 (256)
..+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+...|..
T Consensus 55 ~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 3788889999998887753 45677888888888 888999999999888765 55667777778877
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhh-------------------hcCCCHHHHHHHHHHHHh----cCCHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------VCKPDAITYNTIIDGLCK----QGFVDKAK 140 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-------------------~~~~~~~~~~~l~~~~~~----~~~~~~a~ 140 (256)
.+++++|+.+|++..+.|........-.+.. .-..+...+..+...|.. .+++++|.
T Consensus 128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 7788889999888877642110000000000 011345555566666665 56666666
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChhHHHHH
Q 047518 141 ELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASSL 212 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~ 212 (256)
..|.+..+.| +..++..+...|.. .+++++|..++++..+.+ +...+..+...+.. .+++++|...
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 6666666553 34445555555553 566666766666666543 33455555555655 6677777777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHHhcC
Q 047518 213 LDLMIQHGVRPDAFTYNTLLDGFCLT-----GRVNHAKELFVSMESMG 255 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g 255 (256)
|+...+.| +...+..+...|... +++++|..++++..+.|
T Consensus 282 ~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 282 YRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 77766553 445566666666665 67777777777666544
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.55 E-value=2.9e-13 Score=100.07 Aligned_cols=197 Identities=14% Similarity=0.044 Sum_probs=143.4
Q ss_pred ccCChHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC---CCchhhHHhhhhhcC
Q 047518 48 KNKHYDTVLSLFKRLNS-------TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF---TPDVVTFTSLIKVCK 117 (256)
Q Consensus 48 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~ 117 (256)
..|+++.|+..+++..+ ...+....++..+...+...|++++|+..++++.+... .++ .+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~ 82 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD----------HP 82 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT----------CH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc----------ch
Confidence 34555555555554433 12122355777788888888888888888888776310 000 01
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc------
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------N-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ------ 184 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------ 184 (256)
....++..+...|...|++++|...+.+.... . .+....++..+...+...|++++|...+++..+.
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 23457888999999999999999999988754 1 1234677888999999999999999999998864
Q ss_pred CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------------------------------------------
Q 047518 185 GVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMIQH-------------------------------------------- 219 (256)
Q Consensus 185 ~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------------------------------------- 219 (256)
+-.| ...++..+..++...|++++|...+++..+.
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 1122 3567888999999999999999999988752
Q ss_pred ----CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 220 ----GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 220 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+....++..+...|...|++++|.+++++..+.
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11223446888999999999999999999988753
No 66
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.55 E-value=1.1e-13 Score=102.25 Aligned_cols=200 Identities=14% Similarity=0.101 Sum_probs=153.5
Q ss_pred CCCCcCChhhHHHHHHHHHHhC-----CC-CCCcccHHHHHHHHHccCChHHHHHHHHHHhhC------CCCC-CHhhHH
Q 047518 9 GDITTITPNEALCIFDYMLRMH-----PS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST------GLFP-DLYTHS 75 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~ 75 (256)
.....|++++|+..|++..+.- .. +....++..+...+...|++++|...+++..+. +-.| ...++.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4567889999999998877631 11 134667889999999999999999999998654 2222 356889
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCC---CCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 047518 76 ILINCFCKMGRVSHGFVVLGRILRSCF---TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--- 149 (256)
Q Consensus 76 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 149 (256)
.+..+|...|++++|..+++++.+... .++ .+....++..+...|...|++++|...+++..+.
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF----------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876410 000 0123557888999999999999999999988764
Q ss_pred ---C-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----------------------------------------
Q 047518 150 ---N-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----------------------------------------- 184 (256)
Q Consensus 150 ---~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------------------------- 184 (256)
+ .+....++..+...|...|++++|...+++..+.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1 1224567888999999999999999999998753
Q ss_pred -------CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 185 -------GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 185 -------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+....++..+..+|...|++++|..++++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122345678899999999999999999998875
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.54 E-value=1e-12 Score=101.80 Aligned_cols=232 Identities=10% Similarity=0.006 Sum_probs=173.0
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHccCChHHHHHHHHHHhhC----CC-CC-CHhhHHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPP----VSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GL-FP-DLYTHSIL 77 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l 77 (256)
..+...|++++|+..|++..+.....++ ..++..+...|...|+++.|...+++..+. +. .+ ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3456789999999999998875332122 456888999999999999999999987543 11 11 24578889
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC
Q 047518 78 INCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD-----KNV 151 (256)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~ 151 (256)
..+|...|++++|...+++..+..-. ++. .....++..+..+|...|++++|...+.+... ...
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQND----------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 99999999999999999998763100 010 11234678899999999999999999999876 432
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCC-
Q 047518 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV----QPNVVTFNVIMDELCKNGK---MDEASSLLDLMIQHGVRP- 223 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~- 223 (256)
....++..+...+.+.|++++|...+++..+... +.....+..+...+...++ +.+|...++. .+..|
T Consensus 259 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~ 334 (378)
T 3q15_A 259 -LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAY 334 (378)
T ss_dssp -GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHH
T ss_pred -hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhH
Confidence 3467888899999999999999999999886421 2223455666666777788 6666666665 33223
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
....+..+...|...|++++|...+++..+
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234677888999999999999999988764
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=3.4e-12 Score=91.71 Aligned_cols=133 Identities=10% Similarity=-0.037 Sum_probs=63.2
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
+..+......+...|++++|+..|+...+...+++...+..+..++...|++++|+..+++..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------- 72 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------------- 72 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------------
Confidence 344444555555555555555555555444322344444445555555555555555555554421
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch-------HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV-------VTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+.+...|..+..+|...|++++|...+++..+.... +. ..|..+-..+...|++++|...+++..+.
T Consensus 73 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 73 -YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp -CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred -cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 112334444555555555555555555555443221 22 23444444445555555555555555443
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=6.4e-14 Score=109.49 Aligned_cols=238 Identities=10% Similarity=0.000 Sum_probs=177.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhC----CCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC----CC-CCCHhhHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMH----PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GL-FPDLYTHSIL 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 77 (256)
|..+...|++++|+..|++..... ..+....++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 445667899999999999987651 11134567888999999999999999999987654 11 1234578888
Q ss_pred HHHHHhcCC-----------------cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 78 INCFCKMGR-----------------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 78 ~~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
...|...|+ +++|+.++++..+..... ........++..+...|...|++++|.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL---------GDRGAQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999999999 888988888876531000 000122347788899999999999999
Q ss_pred HHHHHHHhCCCC-----CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--C---CcHHHHHHHHHHHHhcCChhHHH
Q 047518 141 ELFLKMKDKNVK-----PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--Q---PNVVTFNVIMDELCKNGKMDEAS 210 (256)
Q Consensus 141 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~ll~~~~~~g~~~~a~ 210 (256)
..+++..+.... ....++..+...|...|++++|...+++...... . ....++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (411)
T 4a1s_A 244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987653111 1123788888999999999999999999875311 0 12567888999999999999999
Q ss_pred HHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 211 SLLDLMIQH----GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 211 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+++..+. +. .....++..+..+|...|++++|.+.+++..+
T Consensus 324 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 324 EYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999988752 11 11234788889999999999999999998765
No 70
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.53 E-value=6.2e-11 Score=94.93 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=171.1
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----c
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----M 84 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 84 (256)
.+++++|+..|++....+ +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .
T Consensus 92 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 678888888888887643 44567777777777 778888888888887765 45667777777776 6
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhh----------------------hcCCCHHHHHHHHHHHHh----cCCHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCK----QGFVDK 138 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----------------------~~~~~~~~~~~l~~~~~~----~~~~~~ 138 (256)
+++++|+.+|++..+.|. ...+..+-. .-..+...+..+...|.. .+++++
T Consensus 165 ~d~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQGN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 778888888888777642 111111100 112466778888888886 899999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-----CChhHH
Q 047518 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-----GKMDEA 209 (256)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a 209 (256)
|...|++..+.| +...+..+...|.. .++.++|...++...+.| +...+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998875 45566677777777 899999999999998875 456777888888887 899999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhcC
Q 047518 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKELFVSMESMG 255 (256)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g 255 (256)
...|++..+.| +...+..+...|...| +.++|.+++++..+.|
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 99999999875 5677888888888767 8899999999987765
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=3.9e-13 Score=101.69 Aligned_cols=238 Identities=8% Similarity=-0.004 Sum_probs=175.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHh----CCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCC-CCC----HhhHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRM----HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPD----LYTHSIL 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 77 (256)
+..+...|++++|++.+++.... +..+....++..+...+...|++++|...+++..+... .++ ..++..+
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 129 (338)
T 3ro2_A 50 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 44566789999999999987654 11212356788899999999999999999998754311 112 3478888
Q ss_pred HHHHHhcCC--------------------cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHH
Q 047518 78 INCFCKMGR--------------------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137 (256)
Q Consensus 78 ~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~ 137 (256)
...+...|+ +++|...+++..+..... ........++..+...+...|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL---------GDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHhCCHH
Confidence 899999999 888888888776521000 000112346788889999999999
Q ss_pred HHHHHHHHHHhCC----C-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CCC-cHHHHHHHHHHHHhcCChh
Q 047518 138 KAKELFLKMKDKN----V-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG----VQP-NVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 138 ~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~g~~~ 207 (256)
+|...+++..+.. . .....++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|+++
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 9999999876431 1 1123477888889999999999999999987531 111 1567788899999999999
Q ss_pred HHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 208 EASSLLDLMIQH----GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 208 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...+++..+. +. .....++..+...|.+.|++++|.+.+++..+
T Consensus 281 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 281 KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999987642 11 11244778899999999999999999998875
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=3.8e-13 Score=104.73 Aligned_cols=238 Identities=9% Similarity=-0.004 Sum_probs=176.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCC----CCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC----CCC-CHhhHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHP----SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG----LFP-DLYTHSIL 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l 77 (256)
|..+...|++++|...|++...... .+....++..+...+...|++++|...+++..+.. ..+ ...++..+
T Consensus 54 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 54 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4456778999999999998765421 11235578889999999999999999999876531 111 13478888
Q ss_pred HHHHHhcCC--------------------cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHH
Q 047518 78 INCFCKMGR--------------------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137 (256)
Q Consensus 78 ~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~ 137 (256)
...+...|+ +++|...+.+..+...... ..+....++..+...|...|+++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~ 204 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG---------DRAAQGRAFGNLGNTHYLLGNFR 204 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTBHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHccCHH
Confidence 999999999 8999998888765310000 00112446788899999999999
Q ss_pred HHHHHHHHHHhCC----CC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCChh
Q 047518 138 KAKELFLKMKDKN----VK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQP-NVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 138 ~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~ 207 (256)
+|...+++..+.. .. ....++..+...+...|++++|...+++.... +..+ ...++..+...+...|+++
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 9999999876431 11 11347888889999999999999999998753 1111 1567888999999999999
Q ss_pred HHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 208 EASSLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 208 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...+++..+. +..+ ...++..+...|...|++++|.+.+++..+
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988652 1111 145788889999999999999999988654
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=1.6e-11 Score=88.12 Aligned_cols=168 Identities=12% Similarity=-0.003 Sum_probs=140.4
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
.|+..+......+...|++++|+..|++..+..- +++...+..+..++...|++++|+..|++...
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 70 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIK 70 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 4567888899999999999999999999988521 14566677789999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV-------VTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.... +..++..+...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++..+.
T Consensus 71 ~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-- 146 (228)
T 4i17_A 71 KNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-- 146 (228)
T ss_dssp TTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--
T ss_pred hCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--
Confidence 7544 67789999999999999999999999999864 2234 45888888999999999999999999875
Q ss_pred CCC---HHhHHHHHHHHHhcCCh---------------------------hHHHHHHHHHHhc
Q 047518 222 RPD---AFTYNTLLDGFCLTGRV---------------------------NHAKELFVSMESM 254 (256)
Q Consensus 222 ~~~---~~~~~~l~~~~~~~g~~---------------------------~~a~~~~~~m~~~ 254 (256)
.|+ ...+..+..+|...|+. ++|+..+++..+.
T Consensus 147 ~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 147 TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 454 56788888888888877 8888888877653
No 74
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.45 E-value=6.8e-11 Score=102.10 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=144.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhh------
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT------ 108 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 108 (256)
+..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|++++....+..-.+...+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 4567889999999999999999999664 3677888899999999999999999988776542221111
Q ss_pred --------HHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHH
Q 047518 109 --------FTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180 (256)
Q Consensus 109 --------~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 180 (256)
+..++ -.++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++
T Consensus 1178 AKl~rleele~fI--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HhhcCHHHHHHHH--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11111 2456667777889999999999999999874 3788899999999999999998887
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 181 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
. .+..+|..+..+|...|+++.|......+ ..++..+..++..|.+.|.+++|+.+++.-.
T Consensus 1247 A------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1247 A------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred h------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6 24577887778888888877777765532 3356667788888888888888888886653
No 75
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.44 E-value=2.7e-11 Score=79.04 Aligned_cols=130 Identities=15% Similarity=0.239 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (256)
.|..+...+...|++++|..+++.+.+.+. .+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 567788899999999999999999987654 367788889999999999999999999999874 446778889999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998763 456788899999999999999999999998764
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.43 E-value=8.1e-12 Score=93.26 Aligned_cols=203 Identities=10% Similarity=-0.016 Sum_probs=146.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhC----CCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNST----GLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
|......|...|++++|...|++..+. |-+++ ..+|+.+..+|...|++++|+..+++.++.. +..
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--~~~------- 110 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF--THR------- 110 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHc-------
Confidence 333456778899999999999987543 32222 4689999999999999999999999988731 000
Q ss_pred hhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC---C-c-hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 114 KVCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVK---P-N-VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~---~-~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.....-..+++.+..+|... |++++|+..|++..+.... + . ..++..+...+...|++++|...+++..+....
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 00001134788899999996 9999999999988754211 1 1 356888899999999999999999999986433
Q ss_pred CcH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 047518 188 PNV------VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA------FTYNTLLDGFC--LTGRVNHAKELFVSME 252 (256)
Q Consensus 188 ~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~m~ 252 (256)
... ..+..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|++.|+++.
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 222 25677888899999999999999998763 3332 13445566664 4567888888876653
No 77
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.5e-11 Score=97.75 Aligned_cols=238 Identities=13% Similarity=0.012 Sum_probs=126.8
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHH---HHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cC
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGC---LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----MG 85 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 85 (256)
.+++++|+..|++..+..|. +...+..+... +...++.++|++.+++..+.. +.+..++..+...+.. .+
T Consensus 151 ~~~y~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPK--NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC----
T ss_pred cccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhh
Confidence 45788888888888777664 44444443333 334566666666666555442 2233334333333332 23
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHh--------------------hhhhcCCCHHHHHHHHHHHHh-------------
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTS--------------------LIKVCKPDAITYNTIIDGLCK------------- 132 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------ll~~~~~~~~~~~~l~~~~~~------------- 132 (256)
++++|.+++++..+... ....++.. .+...+.+..++..+..+|..
T Consensus 228 ~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44555555555544311 11111111 111223445556655555432
Q ss_pred ------cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHH-HHHhc
Q 047518 133 ------QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV--TFNVIMD-ELCKN 203 (256)
Q Consensus 133 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~-~~~~~ 203 (256)
.+.++.|...+......... +..++..+...+...|++++|...|++..+....+... .+..+.. .....
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC
Confidence 22356677777777665432 55667778888888899999999888888764433221 2222222 23467
Q ss_pred CChhHHHHHHHHHHHCC-----------------------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 204 GKMDEASSLLDLMIQHG-----------------------VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
|++++|+..|.+..+.. -+.+..+|..+...|...|++++|++.|++..+.|
T Consensus 386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88888888887765431 13456788999999999999999999999987654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=1.1e-10 Score=90.03 Aligned_cols=236 Identities=11% Similarity=0.031 Sum_probs=159.9
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhCCC-CCC----HhhHHHHHHH
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPD----LYTHSILINC 80 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~ 80 (256)
+...|++++|...+++.....+. .+. .+++.+...+...|+++.|...+++..+... ..+ ..++..+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45689999999999998886543 222 2466777888899999999999998754310 111 2346677888
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--chH
Q 047518 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--P--NVV 156 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~ 156 (256)
+...|++++|...+++..+........ ..+.....+..+...+...|++++|...+.+....... + ...
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLE-------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCT-------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 999999999999999887631000000 00012335566778888999999999999887654221 1 234
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHh
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFN-----VIMDELCKNGKMDEASSLLDLMIQHGVRP---DAFT 227 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~ 227 (256)
++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++........+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677777888889999999999988875311111 11121 23344778899999999988876543211 1234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..+...+...|++++|...+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777888888999999888877643
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=3e-11 Score=93.22 Aligned_cols=236 Identities=11% Similarity=0.006 Sum_probs=167.9
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhC----CCC--C-CHhhHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLF--P-DLYTHSI 76 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ 76 (256)
..+...|++++|...+++.....+...+. .++..+...+...|++++|...+++..+. +.. | ....+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 34556899999999999987654332222 23567788899999999999999987543 222 2 2346677
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN-- 154 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 154 (256)
+...+...|++++|...+++..+..-.... ......+..+...+...|++++|...+++.......++
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQP----------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCG----------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCc----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 888999999999999999998875322111 11234677888999999999999999998865321111
Q ss_pred hHHHH----HHHHHHhccCCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCC
Q 047518 155 VVTYT----SVIRGFCYANDWNEAKRLFIEMMDQGVQP---NVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HGVRP 223 (256)
Q Consensus 155 ~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~ 223 (256)
..... ..+..+...|++++|...+++.......+ ....+..+...+...|++++|...++.... .|..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 11111 23344778999999999999887543221 133567788899999999999999998764 22222
Q ss_pred CH-HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 DA-FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+. ..+..+..++...|+.++|...+++...
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22 3666778889999999999999887654
No 80
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.7e-10 Score=91.72 Aligned_cols=233 Identities=9% Similarity=-0.073 Sum_probs=156.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc--CChHHHHHHHHHHhhCCCCCCHhhHHHHHHH---HHhcCCcch
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN--KHYDTVLSLFKRLNSTGLFPDLYTHSILINC---FCKMGRVSH 89 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~ 89 (256)
.+++|+++.......... ....++..+..++... +++++|+..|++..+.. +.+...+..+..+ +...++.++
T Consensus 116 ~~~ka~~i~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 116 YVDKVKHVCEKFSSPYRI-ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp HHHHHHHHHHHSCCSSCC-CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHhHhcccccch-hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHH
Confidence 356777777765432222 2445677666666554 56999999999998764 2244455555444 445678889
Q ss_pred HHHHHHHHHhcCCCCch-hhHHh------------------------hhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 90 GFVVLGRILRSCFTPDV-VTFTS------------------------LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~-~~~~~------------------------ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
|++.+++.++.. |+. .++.. .+...+.+..++..+...|...|++++|...+.
T Consensus 194 al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 194 AIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp THHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 999999887752 322 11111 111345677788899999999999999999999
Q ss_pred HHHhCCCCCchHHHHHHHHHHhcc-------------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 145 KMKDKNVKPNVVTYTSVIRGFCYA-------------------NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
+..+..+. +..++..+..+|... +..+.|...++...+.. +.+..++..+...+...|+
T Consensus 272 ~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 272 KALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 98876433 555666665554321 33567777788777664 3456678889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHH--hHHHHHH-HHHhcCChhHHHHHHHHHHh
Q 047518 206 MDEASSLLDLMIQHGVRPDAF--TYNTLLD-GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~m~~ 253 (256)
+++|...|++..+....+... .+..+.. .....|+.++|+..+++..+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999998864333221 2333332 23567999999999988765
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=3.3e-11 Score=93.39 Aligned_cols=234 Identities=7% Similarity=-0.047 Sum_probs=161.7
Q ss_pred CCCcCChhhHHHHHHHHHHhCCC---CCCcccHHHHHHH--HHccCChHHHH-----------HHHHHHhhCCCCCCH--
Q 047518 10 DITTITPNEALCIFDYMLRMHPS---PPPVSSFNIMLGC--LAKNKHYDTVL-----------SLFKRLNSTGLFPDL-- 71 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 71 (256)
.++.+++++|..+++++.+..+. .++...|..++.. ..-.+..+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 46789999999999998765322 1233333333322 11223344444 666666443111111
Q ss_pred --hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 72 --YTHSILINCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 72 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
..+......+...|++++|...+++..+.... ++.. ....++..+...|...|++++|...+.+..+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI----------EKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12223566778899999999999999874111 1111 1345788899999999999999999998765
Q ss_pred CC--C----CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 149 KN--V----KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 149 ~~--~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.- . .....+++.+...|...|++++|...+++..+. +-. ....++..+..+|...|++++|...+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 31 1 112457888889999999999999999998753 111 113478889999999999999999999887
Q ss_pred HC----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 218 QH----GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 218 ~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+. +. +....++..+...|.+.|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 61 23 33466788999999999999999999988754
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.37 E-value=7.3e-12 Score=104.10 Aligned_cols=174 Identities=9% Similarity=-0.076 Sum_probs=142.5
Q ss_pred CCcCChhhHHHHHHHHH--------HhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 11 ITTITPNEALCIFDYML--------RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
...|++++|++.|++.. +..+ .+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 57899999999999998 5444 477789999999999999999999999998764 346778999999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
..|++++|+..|+++++.. +.+...|..+..+|.+.|++++ ...|++..+.... +...|..+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~---------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg 541 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF---------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLA 541 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS---------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHH
Confidence 9999999999999998852 3456778889999999999999 9999999887544 677889999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
.++...|++++|...+++..+.. +-+...+..+..++...++
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999999999999988763 2245677777777766554
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.37 E-value=6.4e-11 Score=86.84 Aligned_cols=194 Identities=12% Similarity=0.003 Sum_probs=143.7
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHH
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT 110 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 110 (256)
.+...+..+...+.+.|++++|+..|+.+.+.. +.+ ...+..+..++...|++++|+..|+++++.. |+.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~---- 85 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QID---- 85 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCC----
Confidence 456677888889999999999999999998864 223 5688889999999999999999999999852 211
Q ss_pred hhhhhcCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCchHHH-----------------HHHHHHH
Q 047518 111 SLIKVCKPDAITYNTIIDGLCK--------QGFVDKAKELFLKMKDKNVKPNVVTY-----------------TSVIRGF 165 (256)
Q Consensus 111 ~ll~~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~ 165 (256)
+....++..+..++.. .|++++|...|+++....+. +.... ..+...|
T Consensus 86 ------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 86 ------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp ------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123467778888888 99999999999999876432 22223 4557788
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCH----HhHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQP--NVVTFNVIMDELCKN----------GKMDEASSLLDLMIQHGVRPDA----FTYN 229 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~----~~~~ 229 (256)
...|++++|...++++.+..... ....+..+..+|... |++++|...|+.+.+. .|+. ....
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~ 236 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEE 236 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHH
Confidence 99999999999999998763221 345677778888766 8889999999999875 3332 2344
Q ss_pred HHHHHHHhcCChhH
Q 047518 230 TLLDGFCLTGRVNH 243 (256)
Q Consensus 230 ~l~~~~~~~g~~~~ 243 (256)
.+...+...++.++
T Consensus 237 ~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 237 LYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhh
Confidence 44444444444443
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.36 E-value=4.7e-12 Score=89.72 Aligned_cols=171 Identities=9% Similarity=0.031 Sum_probs=102.9
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHH----------------HHHHHHhcCCcchHHHHHHHHHhcCCCCc
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI----------------LINCFCKMGRVSHGFVVLGRILRSCFTPD 105 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 105 (256)
....+.+.|++++|+..|++..+.. +.+...|.. +..++.+.|++++|+..|++.++..
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---- 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----
Confidence 3344445555555555555554432 112233444 7777778888888888888777641
Q ss_pred hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC--HHHHHHHHHHHHH
Q 047518 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND--WNEAKRLFIEMMD 183 (256)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~ 183 (256)
+.+...+..+..+|...|++++|...|++..+..+. +..++..+...|...|+ ...+...++....
T Consensus 85 -----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 85 -----------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp -----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 345667777778888888888888888887776433 56667777666655543 3344445544432
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 184 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
..|....+.....++...|++++|...|++..+. .|+......+..
T Consensus 153 --~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 153 --PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 2333334444555666778888888888887764 566655444433
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=1.3e-10 Score=75.65 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------~~ 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------PR 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------TT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---------------CC
Confidence 4445555555555555555555554432 2234445555555555555555555555554421 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
+...+..+...+...|++++|...++.+..... .+..++..+...+...|++++|...++++..
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 233444444555555555555555555444322 1333444444444455555555555544443
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.35 E-value=3.1e-11 Score=100.34 Aligned_cols=173 Identities=9% Similarity=-0.044 Sum_probs=143.9
Q ss_pred HccCChHHHHHHHHHHh--------hCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 47 AKNKHYDTVLSLFKRLN--------STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 47 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++.+. .+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~p~ 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER---------------VGW 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------HCC
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---------------Ccc
Confidence 78899999999999998 432 345678889999999999999999999999874 245
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++ ...+++..+.. +.+...|..+..
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~ 542 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLAR 542 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHH
Confidence 6778999999999999999999999999887543 67788899999999999999 99999999875 346778999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCC
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGR 240 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 240 (256)
++.+.|++++|...|++..+. .|+ ...+..+..++...++
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999999999999998775 454 5677777777766554
No 87
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=2.6e-10 Score=92.21 Aligned_cols=187 Identities=12% Similarity=0.051 Sum_probs=149.7
Q ss_pred cCChh-------hHHHHHHHHHH-hCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-H-hhHHHHHHHHH
Q 047518 13 TITPN-------EALCIFDYMLR-MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-L-YTHSILINCFC 82 (256)
Q Consensus 13 ~g~~~-------~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~ 82 (256)
.|+++ +|..+|++..+ ..| .+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p--~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLK--KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH
Confidence 57876 89999999986 444 47788999999999999999999999999986 444 2 58899999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID-GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
+.|++++|..+|++..+.. |. +...|...+. .+...|++++|..+|+...+... .+...|..+
T Consensus 368 ~~~~~~~A~~~~~~Al~~~--~~-------------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~ 431 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKAREDA--RT-------------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHHHTCT--TC-------------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcc--CC-------------chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 9999999999999998752 21 1222222222 23468999999999999887643 367889999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCC-CCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGV-QPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..++.++.+.
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998642 232 458888888889999999999999988764
No 88
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.34 E-value=5.4e-10 Score=79.29 Aligned_cols=177 Identities=9% Similarity=-0.023 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----CcchHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG----RVSHGFV 92 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~ 92 (256)
.+|++.|++..+.+ ++.++..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|+.
T Consensus 3 ~eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 34666777766542 45667777777777777788887777777654 45566666666666 5 6777777
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHhc
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCY 167 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 167 (256)
+|++..+. .++..+..|...|.. .+++++|...|.+..+.|.. .+..++..+-..|..
T Consensus 75 ~~~~A~~~-----------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 75 LAEKAVEA-----------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHHHHHT-----------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-----------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 77777653 345566667777766 67777777777777766532 014556666666665
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHCC
Q 047518 168 ----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-G-----KMDEASSLLDLMIQHG 220 (256)
Q Consensus 168 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 220 (256)
.+++++|..++++..+.+ .+...+..+...|... | ++++|...|+...+.|
T Consensus 138 g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 138 GVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp TSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 667777777777776651 2333455555555432 2 6677777776666554
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=1.5e-10 Score=81.91 Aligned_cols=177 Identities=9% Similarity=-0.000 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhh-HHh--hhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT-FTS--LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~--ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
..+......+...|++++|+..|++..+. .|+... +.. +-.........+..+..+|.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445566778999999999999999885 343221 111 1111122234455688899999999999999999988
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHH
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK--MDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~ 226 (256)
..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..+|...|+ ...+...+..... ..|...
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 7544 77889999999999999999999999999874 3467788888888866654 4455566655542 233333
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+.....++...|++++|...|++..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4555566777889999999999988754
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=5.4e-09 Score=77.40 Aligned_cols=144 Identities=13% Similarity=0.052 Sum_probs=109.6
Q ss_pred hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+..++....++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.+++|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344444433345566667888999999999999999999877654 236778889999999999999999999999886
Q ss_pred CCCC-----cHHHHHHHHHHH--HhcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 185 GVQP-----NVVTFNVIMDEL--CKNG--KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 185 ~~~~-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.| +..+...++.++ ...| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56 356666666563 3334 899999999999765 45534444455589999999999999987654
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.33 E-value=2.6e-09 Score=79.66 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=176.6
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC--ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHH----Hhc---
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK--HYDTVLSLFKRLNSTGLFPDLYTHSILINCF----CKM--- 84 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 84 (256)
...++|+.+++.++..+|. +..+|+.--..+...+ ++++++..++.+.... +-+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3446899999999998876 7778998888888888 9999999999998875 23556676665555 555
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD--KAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
+++++++.+++++.+. .+.+-.+|+.-.-.+.+.|.++ +++..++.+.+..+. |..+|+...
T Consensus 124 ~~~~~EL~~~~~~l~~---------------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~ 187 (306)
T 3dra_A 124 FDPYREFDILEAMLSS---------------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRF 187 (306)
T ss_dssp CCTHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 7888999999999874 2457778888888888888888 999999999988765 777888777
Q ss_pred HHHhccCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHhHHHHHH
Q 047518 163 RGFCYAND------WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASSLLDLMIQHG--VRPDAFTYNTLLD 233 (256)
Q Consensus 163 ~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~ 233 (256)
......+. ++++++.+++++... +-|...|+..-..+.+.|+... +..+..++.+.+ -+.+...+..++.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 77777776 899999999999875 4588899999888988888544 555666655432 1447788999999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
.|.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999875
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.33 E-value=2.7e-10 Score=83.51 Aligned_cols=173 Identities=8% Similarity=-0.043 Sum_probs=133.9
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
.+...+..+...+.+.|++++|+..|+++.+.. |+. +....++..+..+|.+.|++++|...|+...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~----------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTH----------EWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCS----------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCC----------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 356677788889999999999999999999852 211 01156788889999999999999999999988
Q ss_pred CCCC--CchHHHHHHHHHHhc--------cCCHHHHHHHHHHHHHcCCCCcHHHH-----------------HHHHHHHH
Q 047518 149 KNVK--PNVVTYTSVIRGFCY--------ANDWNEAKRLFIEMMDQGVQPNVVTF-----------------NVIMDELC 201 (256)
Q Consensus 149 ~~~~--~~~~~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~ 201 (256)
..+. ....++..+..++.. .|++++|...++++.+.... +.... ..+..+|.
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6331 234567777788888 99999999999999986322 22223 55678899
Q ss_pred hcCChhHHHHHHHHHHHCCCC-C-CHHhHHHHHHHHHhc----------CChhHHHHHHHHHHhc
Q 047518 202 KNGKMDEASSLLDLMIQHGVR-P-DAFTYNTLLDGFCLT----------GRVNHAKELFVSMESM 254 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 254 (256)
..|++++|...|+.+.+.... + ....+..+..+|... |++++|...++++.+.
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999875211 1 345778888888866 8899999999988753
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=1.2e-11 Score=82.84 Aligned_cols=144 Identities=10% Similarity=-0.040 Sum_probs=75.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|+..++......|. +...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 44555666666666666665443322 33445556666666666666666666665543 2245566666666666666
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCchHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL-FLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
+++|+..|++.++.. +.+..+|..+...|.+.|++++|... +++..+..+. +..+|......+
T Consensus 81 ~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll 144 (150)
T 4ga2_A 81 TDKAVECYRRSVELN---------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHH
Confidence 666666666665531 22344555556666666665544433 3444443222 344444444444
Q ss_pred hccC
Q 047518 166 CYAN 169 (256)
Q Consensus 166 ~~~~ 169 (256)
...|
T Consensus 145 ~~~G 148 (150)
T 4ga2_A 145 DCEG 148 (150)
T ss_dssp HTCC
T ss_pred HHhC
Confidence 4333
No 94
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.33 E-value=8.5e-11 Score=95.87 Aligned_cols=154 Identities=9% Similarity=-0.049 Sum_probs=118.8
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.|++++|+..|++..+..+. +...|..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 57899999999999887664 77889999999999999999999999998874 3467789999999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc---C
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA---N 169 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~ 169 (256)
.+++..+.. +.+...+..+..+|.+.|++++|...|++..+.... +...+..+...+... |
T Consensus 79 ~~~~al~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 79 LLQQASDAA---------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHhcC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccc
Confidence 999998852 345678889999999999999999999999887543 677888899999999 9
Q ss_pred CHHHHHHHHHHHHHcC
Q 047518 170 DWNEAKRLFIEMMDQG 185 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~ 185 (256)
+.++|...+++..+.+
T Consensus 143 ~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQG 158 (568)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcC
Confidence 9999999999999875
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=8.5e-12 Score=85.95 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=95.4
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
..+......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..++++.+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------- 70 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--------------- 70 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---------------
Confidence 345556666667777777777777665542 2245566667777777777777777776655431
Q ss_pred CCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-cHHHHH
Q 047518 117 KPDAITYNTIIDG-LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP-NVVTFN 194 (256)
Q Consensus 117 ~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 194 (256)
|+...+..+... +...+....|...+++..+..+. +...+..+...+...|++++|...++++.+....+ +...+.
T Consensus 71 -p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 71 -QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp -CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred -CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 122111111111 11222223456666666655332 45666667777777777777777777777654322 244666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.+..++...|+.++|...|++..
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777777777777777776654
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.31 E-value=6.2e-10 Score=79.00 Aligned_cols=177 Identities=11% Similarity=-0.025 Sum_probs=144.8
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh
Q 047518 53 DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~ 132 (256)
.+|.+.|++..+.| +...+..+...|...+++++|+.+|++..+.| ++..+..|...|..
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----------------~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----------------DGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHc
Confidence 35778888888765 67788889999999999999999999998853 45667778888888
Q ss_pred cC----CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHh-
Q 047518 133 QG----FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCK- 202 (256)
Q Consensus 133 ~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~- 202 (256)
+ ++++|...|++..+.| +..++..+-..|.. .+++++|..++++..+.+.. .+...+..+...|..
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 7 9999999999998875 56677778888877 88999999999999987532 126788888888988
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcC
Q 047518 203 ---NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT-G-----RVNHAKELFVSMESMG 255 (256)
Q Consensus 203 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g 255 (256)
.+++++|...|++..+. ..+...+..|...|... | +.++|..++++..+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88999999999999886 23455677777787653 3 8999999999988776
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=5.8e-11 Score=88.60 Aligned_cols=199 Identities=11% Similarity=0.007 Sum_probs=141.4
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCC---CC-CcccHHHHHHHHHccCChHHHHHHHHHHhhC----CCCC-CHhhHHHHHH
Q 047518 9 GDITTITPNEALCIFDYMLRMHPS---PP-PVSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFP-DLYTHSILIN 79 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 79 (256)
.|...|++++|+..|++.....+. ++ ...+|+.+...|.+.|++++|+..+++..+. |-.. -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455678999999999987765221 01 2467899999999999999999999987653 2111 1357888999
Q ss_pred HHHhc-CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---
Q 047518 80 CFCKM-GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV--- 155 (256)
Q Consensus 80 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 155 (256)
+|... |++++|+..|++.++..-..+.. .....++..+...+.+.|++++|+..|++..........
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 99996 99999999999988741000000 001346788899999999999999999999886543222
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHH--hcCChhHHHHHHHHHHH
Q 047518 156 ---VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN------VVTFNVIMDELC--KNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 156 ---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 218 (256)
..|..+..++...|++++|...+++..+. .|+ ...+..++.++. ..+++++|...|+.+..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 15677788899999999999999998764 232 123445566664 44567777777766543
No 98
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.30 E-value=3.2e-10 Score=98.07 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=148.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|.+++|..+|++.. . .....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~----~--~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD----V--NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC----C--HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 455678899999999999962 1 2223344433 7788999999998652 46789999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|+..|.+. .|...|..++.++.+.|++++|.+.|....+....|.. .+.++.+|+
T Consensus 1121 ~kEAIdsYiKA--------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I--dt~LafaYA 1178 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHhc--------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--cHHHHHHHH
Confidence 99999999553 35667788999999999999999999987776433233 335888888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
+.+++++...++ + .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+
T Consensus 1179 Kl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1179 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 888888644442 2 346667777888888999999999988874 368888888888888888888
Q ss_pred HHHHHH
Q 047518 247 LFVSME 252 (256)
Q Consensus 247 ~~~~m~ 252 (256)
.+++..
T Consensus 1243 aarKA~ 1248 (1630)
T 1xi4_A 1243 GARKAN 1248 (1630)
T ss_pred HHHHhC
Confidence 877653
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.29 E-value=2.6e-10 Score=85.69 Aligned_cols=222 Identities=9% Similarity=-0.016 Sum_probs=155.2
Q ss_pred CCcCChhhHHHHHHHHHHhCCC-----CCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhC----CCCC-CHhhHHH
Q 047518 11 ITTITPNEALCIFDYMLRMHPS-----PPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFP-DLYTHSI 76 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ 76 (256)
++.|++++|.+++++..+..+. .++. ..|+.....|...|++++|...|.+..+. +-.+ -..+|..
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567888999999887664321 1221 24667778888999999999999987543 2111 1357888
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK 152 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 152 (256)
+..+|...|++++|+..|++.++....... ......++..+...|.. |++++|+..|++.... +..
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGT---------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 999999999999999999998763111000 00123467788889988 9999999999987653 111
Q ss_pred C-chHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--
Q 047518 153 P-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-- 224 (256)
Q Consensus 153 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 224 (256)
+ ...++..+...|...|++++|...+++..+. +..+. ...+..+..++...|++++|...|++.. . .|+
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~ 228 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTST
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCC
Confidence 1 1467888899999999999999999998853 21122 2366777778888899999999999988 4 232
Q ss_pred ----HHhHHHHHHHHHhcCChhHHHH
Q 047518 225 ----AFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 225 ----~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
......++.++ ..|+.+.+.+
T Consensus 229 ~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 229 GSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 12344555555 5677766655
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.28 E-value=3.5e-10 Score=84.15 Aligned_cols=168 Identities=8% Similarity=-0.004 Sum_probs=133.0
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
+.+...+..+...+.+.|++++|...|+++.+. .+.+...+..+...+...|++++|...++++.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---------------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 445567778888899999999999999999874 23467788889999999999999999999987
Q ss_pred hCCCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH
Q 047518 148 DKNVKPNVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR-PDA 225 (256)
Q Consensus 148 ~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~ 225 (256)
.... +.. ........+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+.... .+.
T Consensus 179 ~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 LQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp GGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred hhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 7643 333 22223334667788888999999988874 446788999999999999999999999999875311 125
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+..++..+...|+.++|...+++...
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 6789999999999999999998887653
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=1.4e-09 Score=77.86 Aligned_cols=169 Identities=10% Similarity=-0.035 Sum_probs=111.7
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+.+.|++++|+..|+++.+.. |+. +.....+..+..+|.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~----------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFG----------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTS----------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 3445556666777777777777777777641 110 0112455666777777788888888777776653
Q ss_pred CCCch--HHHHHHHHHHh------------------ccCCHHHHHHHHHHHHHcCCCCcH-HHH----------------
Q 047518 151 VKPNV--VTYTSVIRGFC------------------YANDWNEAKRLFIEMMDQGVQPNV-VTF---------------- 193 (256)
Q Consensus 151 ~~~~~--~~~~~li~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~---------------- 193 (256)
+.... .++..+..++. ..|++++|...++++.+.. |+. ..+
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHH
Confidence 32111 13333333333 2567888888888887752 321 111
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 194 -NVIMDELCKNGKMDEASSLLDLMIQHGVRPD----AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 194 -~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
..+...+.+.|++++|...|+.+.+. .|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 34566788999999999999999875 233 2568888999999999999999999887764
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=2.1e-10 Score=78.95 Aligned_cols=164 Identities=11% Similarity=0.035 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..+......+.+.|++++|+..|+++.+. .+.+...+..+..++...|++++|...++.......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE---------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH---------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 34566777889999999999999987763 245677899999999999999999999999876543
Q ss_pred CCchHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHhHH
Q 047518 152 KPNVVTYTSVIRG-FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP-DAFTYN 229 (256)
Q Consensus 152 ~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 229 (256)
+...+...... +...+....+...+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+.
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 72 --DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp --CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred --ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 33333222211 122233345788899988764 3357889999999999999999999999999864222 356888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+...+...|+.++|...+++...
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999988764
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=6.8e-10 Score=82.19 Aligned_cols=180 Identities=10% Similarity=0.064 Sum_probs=132.8
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcC
Q 047518 55 VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134 (256)
Q Consensus 55 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~ 134 (256)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+-.+ .+...+..++..+.+.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-------------~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE-------------GTTELLLLAIEVALLNN 150 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------------THHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------------CcHHHHHHHHHHHHHCC
Confidence 677777777665 4566666788899999999999999999987653211 24556777889999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-----chHHHHHHHHHH--hccC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 135 FVDKAKELFLKMKDKNVKP-----NVVTYTSVIRGF--CYAN--DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
+++.|.+.++.|.+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|+
T Consensus 151 r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~ 226 (310)
T 3mv2_B 151 NVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN 226 (310)
T ss_dssp CHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC
Confidence 999999999999876 44 355566666663 3334 899999999999776 3553333444458999999
Q ss_pred hhHHHHHHHHHHHC-----C----CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 206 MDEASSLLDLMIQH-----G----VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 206 ~~~a~~~~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+++|.+.++.+.+. + -+.++.+...+|......|+ +|.++++++.+.
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 99999999976642 1 13356677677766667787 788999888764
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.27 E-value=4.9e-10 Score=91.36 Aligned_cols=154 Identities=11% Similarity=0.000 Sum_probs=118.6
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (256)
.|++++|+..++++.+. .+.+...|..+...|...|++++|...|++..+.... +...+..+..
T Consensus 2 ~g~~~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---------------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGR 65 (568)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46788899999888764 1345678889999999999999999999999987543 6788999999
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---CC
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT---GR 240 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 240 (256)
+|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999874 3467889999999999999999999999998763 44678899999999999 99
Q ss_pred hhHHHHHHHHHHhcC
Q 047518 241 VNHAKELFVSMESMG 255 (256)
Q Consensus 241 ~~~a~~~~~~m~~~g 255 (256)
.++|.+.+++..+.+
T Consensus 144 ~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887643
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=2e-09 Score=77.11 Aligned_cols=169 Identities=11% Similarity=0.071 Sum_probs=101.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCC-C-CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-P-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
+..+...+.+.|++++|+..|+.+.+.... | ....+..+..++.+.|++++|+..|+++.+.. |+...
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~-------- 76 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPN-------- 76 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTT--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCc--------
Confidence 344444555555555555555555543211 1 12344555555555555555555555555431 11000
Q ss_pred CCCHHHHHH------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH-----------------HHH
Q 047518 117 KPDAITYNT------------------IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY-----------------TSV 161 (256)
Q Consensus 117 ~~~~~~~~~------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l 161 (256)
-..++.. +...+...|++++|...|+++.+..+. +..++ ..+
T Consensus 77 --~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 77 --IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp --HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001122 222334578899999999999886432 22222 234
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
...+.+.|++++|...++++.+...... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 5667889999999999999998732211 3568889999999999999999999998764
No 106
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.25 E-value=3.5e-10 Score=89.61 Aligned_cols=127 Identities=14% Similarity=0.066 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCCCc
Q 047518 117 KPDAITYNTIIDGLCKQG---FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA----NDWNEAKRLFIEMMDQGVQPN 189 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~ 189 (256)
..++..+..|...|...| ++++|+..|....+.|.. +...+..+...|... +++++|..+++... .| +
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~ 247 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---Y 247 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---S
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---C
Confidence 344557777888888888 888888888888887753 454445566666544 68888888888877 33 3
Q ss_pred HHHHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-----ChhHHHHHHHHHH
Q 047518 190 VVTFNVIMDE-L--CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG-----RVNHAKELFVSME 252 (256)
Q Consensus 190 ~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~ 252 (256)
...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|.++|++..
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 4455555555 3 46788888888888888776 6667777777776 45 8888888887654
No 107
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.24 E-value=3.6e-10 Score=77.72 Aligned_cols=132 Identities=12% Similarity=0.121 Sum_probs=107.4
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHH-
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC- 80 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 80 (256)
++.+.+..+...|++++|+..|++.....|. +...|..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l 88 (177)
T 2e2e_A 12 RQRDPLHQFASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVL 88 (177)
T ss_dssp CSSTTTCCCC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4667788899999999999999999987765 77889999999999999999999999998764 3366778888888
Q ss_pred HHhcCCc--chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 81 FCKMGRV--SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 81 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
+...|++ ++|...++++.+.. +.+...+..+...|...|++++|...|....+...
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALD---------------SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHhcCCcchHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7788998 99999999988752 34566788889999999999999999999888743
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=1.2e-10 Score=77.88 Aligned_cols=121 Identities=6% Similarity=-0.050 Sum_probs=57.1
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHH
Q 047518 45 CLAKNKHYDTVLSLFKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123 (256)
Q Consensus 45 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 123 (256)
.+...|++++|+..++..... .| +...+..+...|.+.|++++|+..|++.++. .+.+..+|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---------------~p~~~~a~ 68 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---------------QERDPKAH 68 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHH
Confidence 344445555555555554433 12 2223444555555555555555555555542 12234445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHH-HHHHHH
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL-FIEMMD 183 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~ 183 (256)
..+..+|.+.|++++|...|++..+..+. +..++..+...|.+.|+++++... +++..+
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555555555555555555444322 344444455555555554443332 344444
No 109
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.23 E-value=6.1e-09 Score=82.51 Aligned_cols=189 Identities=9% Similarity=-0.015 Sum_probs=127.6
Q ss_pred ccHHHHHHHHHccC---ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----CCcchHHHHHHHHHhcCCCCchhhH
Q 047518 37 SSFNIMLGCLAKNK---HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM----GRVSHGFVVLGRILRSCFTPDVVTF 109 (256)
Q Consensus 37 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (256)
..+..+...|...| +.++|++.|+...+.| .++...+..+...|... +++++|+.+|++.. .
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~--------- 245 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P--------- 245 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---------
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---------
Confidence 36666777777777 6777777777777666 33444445555555443 56677777777765 2
Q ss_pred HhhhhhcCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-----CHHHHHHHHHHH
Q 047518 110 TSLIKVCKPDAITYNTIIDG-L--CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-----DWNEAKRLFIEM 181 (256)
Q Consensus 110 ~~ll~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~ 181 (256)
.++..+..|... | ...+++++|...|++..+.| +...+..+-..|. .| ++++|..+|++.
T Consensus 246 --------g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 246 --------GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp --------GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred --------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 234455566665 4 46788899999998888776 5556666666665 45 888888888887
Q ss_pred HHcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 047518 182 MDQGVQPNVVTFNVIMDELCK----NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMES 253 (256)
Q Consensus 182 ~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 253 (256)
. .| +...+..+...|.. ..++++|...|+...+.|. ......|...|.. ..+.++|..+++...+
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7 33 55666666666665 3488889999988887763 3445556666653 4578888888888776
Q ss_pred cC
Q 047518 254 MG 255 (256)
Q Consensus 254 ~g 255 (256)
.|
T Consensus 387 ~g 388 (452)
T 3e4b_A 387 QD 388 (452)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 110
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=1.7e-09 Score=83.67 Aligned_cols=201 Identities=10% Similarity=0.019 Sum_probs=148.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCC-CC----CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRLNSTGL-FP----DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
.....+...|++++|+..|++..+... .+ ...++..+..+|...|+++.|...+++..+........
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-------- 177 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-------- 177 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------
Confidence 345566789999999999999875421 12 23578889999999999999999999987631110000
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cC
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-----QG 185 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~ 185 (256)
......+++.+...|...|++++|...|.+..+. +.. ....++..+...|...|++++|...+++..+ ..
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 0012456788999999999999999999987652 211 1235678888999999999999999999886 42
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHH
Q 047518 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH----GVRPDAFTYNTLLDGFCLTGR---VNHAKELFVS 250 (256)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 250 (256)
+....++..+...+.+.|++++|...+++..+. +.+.....+..+...|...++ ..+|+..+++
T Consensus 258 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 258 -DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp -GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 334678889999999999999999999998763 112223455666667777788 7777777665
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.22 E-value=1.5e-09 Score=80.72 Aligned_cols=167 Identities=13% Similarity=0.019 Sum_probs=134.9
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++++... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~---------- 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--D---------- 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--G----------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--h----------
Confidence 456678888899999999999999999998774 336678999999999999999999999988764 1
Q ss_pred hhcCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-cHH
Q 047518 114 KVCKPDAIT-YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP-NVV 191 (256)
Q Consensus 114 ~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 191 (256)
|+... .......+...++.++|...+++.....+ .+...+..+...+...|++++|...++++.+..... +..
T Consensus 182 ----p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 182 ----QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ----CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ----cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 23222 22233446777888889999999888754 377888999999999999999999999999874322 267
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+..++..+...|+.++|...+++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 899999999999999999999887653
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.14 E-value=7.6e-09 Score=73.16 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (256)
.+..+...+...|++++|...|.+.. .|+..++..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45567788899999999999999874 5578899999999999999999999999999874 446788999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC----------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 202 KNGKMDEASSLLDLMIQHGVRPD----------------AFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..|++++|...|+...+.. +.+ ...+..+..+|.+.|++++|.+.+++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999998753 222 267888999999999999999999988764
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.14 E-value=1.4e-08 Score=71.82 Aligned_cols=129 Identities=11% Similarity=-0.009 Sum_probs=104.2
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
.+..+...+...|++++|...|++.. .|+...|..+..++...|++++|+..+++..+.. +
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------~ 68 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---------------K 68 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------T
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------c
Confidence 35566778888999999999998774 5577888999999999999999999999888742 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------chHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP---------------NVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
.+...|..+..+|...|++++|...|+...+..... ....+..+..++...|++++|...++...
T Consensus 69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456678888899999999999999999888753221 22677888888899999999999999988
Q ss_pred HcC
Q 047518 183 DQG 185 (256)
Q Consensus 183 ~~~ 185 (256)
+..
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 764
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.13 E-value=1e-07 Score=70.95 Aligned_cols=171 Identities=9% Similarity=-0.005 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 047518 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK- 152 (256)
Q Consensus 74 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 152 (256)
+...+..+...|++++|...+++..+.... +.. .... ...+..+...+...+++++|+..|++.......
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~-~~~~-------~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPE-FQQF-------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCC-CHH-HHHH-------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccC-ChH-HHHH-------HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence 334467788999999999999999874211 110 0000 123445777888889999999999999874322
Q ss_pred Cc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHH----
Q 047518 153 PN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQ---- 218 (256)
Q Consensus 153 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---- 218 (256)
++ ..+++.+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++..+
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22 236889999999999999999999998841 11222 34788999999999999999999998764
Q ss_pred CCCCCC-HHhHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 047518 219 HGVRPD-AFTYNTLLDGFCLTGR-VNHAKELFVSMES 253 (256)
Q Consensus 219 ~~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~ 253 (256)
.+..+. ..+|..+..+|.+.|+ +++|.+.+++..+
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 222233 5688999999999995 6999999887653
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.12 E-value=9.6e-09 Score=69.43 Aligned_cols=130 Identities=10% Similarity=-0.010 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...+..+...+...|++++|...|......... +..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 446777888999999999999999998876533 67888889999999999999999999999874 4467889999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCChhHHHHHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYN--TLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+...|++++|...+++..+.. +.+...+. ..+..+...|++++|++.+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999998753 33555553 34444778899999999988764
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=3.6e-09 Score=79.47 Aligned_cols=194 Identities=9% Similarity=-0.077 Sum_probs=138.7
Q ss_pred cCChHHHHHHHHHHhhC------CCCCCH----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 49 NKHYDTVLSLFKRLNST------GLFPDL----YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~------~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
.|++++|.+++++..+. +..++. ..|......|...|++++|...|.+..+...... ....
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~ 74 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR---------SLFH 74 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---------CHHH
Confidence 46677787777766431 112332 3577777888899999999999998876311000 0001
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV---QP-- 188 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~-- 188 (256)
-..+|+.+...|...|++++|+..|++.... |-.. ...++..+...|.. |++++|+..+++..+... .+
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 2347888899999999999999999986543 2111 24577888888988 999999999999875311 11
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQH----GVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
...++..+...+...|++++|...|++..+. +..+. ...+..+..++...|++++|...+++..
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1467888999999999999999999988752 21111 2366677778888899999999998865
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.11 E-value=5.7e-09 Score=76.28 Aligned_cols=197 Identities=10% Similarity=-0.035 Sum_probs=140.4
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHH-------HHHHHccCChHHHHHHHHHHhhCCCCCC--------------
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIM-------LGCLAKNKHYDTVLSLFKRLNSTGLFPD-------------- 70 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 70 (256)
..++++.|.+.|.++.+..|. ....|..+ ...+...++..+++..++.-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccc
Confidence 579999999999999998876 66678877 46666666666666666655441 221
Q ss_pred --------HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047518 71 --------LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142 (256)
Q Consensus 71 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (256)
...+-.....+...|++++|.+.|+.+...+ | +......+...+.+.++|++|+..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p--------------~~~~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--S--------------EHLVAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--C--------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C--------------chHHHHHHHHHHHHcCCHHHHHHH
Confidence 1233446677888999999999998877642 2 222445556688999999999999
Q ss_pred HHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 143 FLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 143 ~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
|....... .|. ...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 158 l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 158 VKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98655432 121 34667778889999999999999999885433243 34667777888999999999999999988
Q ss_pred CCCCCCHHhHHHH
Q 047518 219 HGVRPDAFTYNTL 231 (256)
Q Consensus 219 ~~~~~~~~~~~~l 231 (256)
. .|+...+..|
T Consensus 237 ~--~P~~~~~~aL 247 (282)
T 4f3v_A 237 T--HPEPKVAAAL 247 (282)
T ss_dssp H--SCCHHHHHHH
T ss_pred c--CCcHHHHHHH
Confidence 5 4554444444
No 118
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.11 E-value=3.4e-08 Score=81.54 Aligned_cols=230 Identities=10% Similarity=-0.005 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHH-HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVL-SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
+++..+|++.+...+. ....|...+..+.+.|+.+.|. .++++.... .+.+...|-..+...-+.|+++.|..+|+
T Consensus 326 ~Rv~~~Ye~aL~~~p~--~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF--APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4566789888887665 7778999999999999999997 999999864 34456667778888889999999999999
Q ss_pred HHHhcCC---------CCchhhHHhhhhhcC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 96 RILRSCF---------TPDVVTFTSLIKVCK-PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 96 ~~~~~~~---------~~~~~~~~~ll~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
++++... .|+.. .-+..+. ....+|...+....+.|+.+.|..+|....+.-.......|...+..-
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~---~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNE---SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhccCcch---hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9887410 01000 0000000 123468888888889999999999999998761112334444333332
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCChh
Q 047518 166 CYA-NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 166 ~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 242 (256)
.+. ++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|+........+ ....|...+..=.+.|+.+
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 333 5589999999999986 34466778888888889999999999999998763221 3457888888888999999
Q ss_pred HHHHHHHHHHh
Q 047518 243 HAKELFVSMES 253 (256)
Q Consensus 243 ~a~~~~~~m~~ 253 (256)
.+.++.+++.+
T Consensus 559 ~~~~v~~R~~~ 569 (679)
T 4e6h_A 559 SVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.11 E-value=8.6e-08 Score=72.37 Aligned_cols=221 Identities=12% Similarity=0.067 Sum_probs=166.0
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC-ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-C-Ccch
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM-G-RVSH 89 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 89 (256)
.+..++|+++++.++..+|. +..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-..++... + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34557899999999998876 7788998888888888 5999999999999875 33677888887777776 6 8889
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCchHHHHHH
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD--------KAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
++.+++++++.. +.+-.+|+.-.-.+.+.|.++ +++..++++.+..+. |..+|+..
T Consensus 144 EL~~~~k~L~~d---------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R 207 (349)
T 3q7a_A 144 EIEYIHGSLLPD---------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWR 207 (349)
T ss_dssp HHHHHHHHTSSC---------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 999999988752 345666666555555555555 899999999888665 77888888
Q ss_pred HHHHhccCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh--------------------hHHHHHHH
Q 047518 162 IRGFCYAND-------WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM--------------------DEASSLLD 214 (256)
Q Consensus 162 i~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~ 214 (256)
...+.+.+. ++++++.+++.+... +-|...|+.+-..+.+.|+. .....+..
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 888877776 688999999988875 44788888877777777764 22222222
Q ss_pred HHHHCC-----CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 215 LMIQHG-----VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 215 ~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
++...+ -.++......++..|...|+.++|.++++.+.+
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 332221 136778889999999999999999999999864
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.08 E-value=8.7e-09 Score=68.77 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
+.+...+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|...+++..+.. +.+...|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 345567888889999999999999999999987543 78889999999999999999999999999875 3367789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
..+|...|++++|...|+...+. .|+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999999999885 45554
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=1.8e-08 Score=65.14 Aligned_cols=111 Identities=9% Similarity=0.010 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...+......|.+.|++++|+..|++..+..+. +..+|..+..++...|++++|+..+++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 346777889999999999999999999887543 78889999999999999999999999999875 3467889999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...|++++|.+.|++..+.. +-+...+..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 999999999999999998853 335555555443
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.04 E-value=3.3e-08 Score=63.13 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...+..+...+...|++++|...+.++..... .+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 55778888999999999999999999987643 367788889999999999999999999999874 4467888999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999998753 34566666666665543
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.03 E-value=6e-10 Score=84.78 Aligned_cols=143 Identities=13% Similarity=-0.002 Sum_probs=76.8
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC--------------HhhHHHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD--------------LYTHSILIN 79 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 79 (256)
+++++|+..|+......+. +...|..+...+.+.|++++|+..|++..+...... ...|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444333222 455677777777777777777777777766531111 245555555
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
+|.+.|++++|+..++++++.. +.+..+|..+..+|...|++++|...|++..+.... +...+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~ 268 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD---------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKT 268 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence 5555555555555555555431 223444555555555555555555555555544322 344455
Q ss_pred HHHHHHhccCCHHHH
Q 047518 160 SVIRGFCYANDWNEA 174 (256)
Q Consensus 160 ~li~~~~~~~~~~~a 174 (256)
.+..++...|+.+++
T Consensus 269 ~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-08 Score=65.22 Aligned_cols=120 Identities=8% Similarity=-0.006 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
+.+...+..+...+...|++++|...|++....... +...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 456678888999999999999999999999887533 67888999999999999999999999999874 3467889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999988753 234556677777766655
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=1.8e-08 Score=64.95 Aligned_cols=120 Identities=12% Similarity=0.000 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+...+..+...+...|++++|...|++...... .+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 455778888999999999999999999887643 367788889999999999999999999999874 345778899999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
++...|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998763 44677888888888887765
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.02 E-value=1.9e-08 Score=76.48 Aligned_cols=133 Identities=10% Similarity=-0.040 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--------------hHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--------------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+...+..+...|.+.|++++|...|++......... ..+|..+..+|.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999999987654322 578999999999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA-KELFVSMES 253 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 253 (256)
. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++| ..++++|.+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4478899999999999999999999999998863 44678899999999999999998 456776653
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.02 E-value=6.8e-09 Score=77.40 Aligned_cols=166 Identities=13% Similarity=0.040 Sum_probs=117.6
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhCCCC-CC----HhhHHHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PD----LYTHSILI 78 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~ 78 (256)
..+...|++++|...+++.....+..++. ..+..+...+...++++.|+..+++....... ++ ..+++.+.
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 44567899999999999998755432332 12335777777888999999999999874322 22 23689999
Q ss_pred HHHHhcCCcchHHHHHHHHHhcC--CCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSC--FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK 152 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 152 (256)
.+|...|++++|+.+|+++.+.- ...+. .....++..+...|.+.|++++|...+++..+. +..
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNE----------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccch----------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999988520 00010 112346778888888999999999888876542 211
Q ss_pred C-chHHHHHHHHHHhccCC-HHHHHHHHHHHHH
Q 047518 153 P-NVVTYTSVIRGFCYAND-WNEAKRLFIEMMD 183 (256)
Q Consensus 153 ~-~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 183 (256)
+ -..+|..+..++...|+ +++|...+++...
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1 25677777788888884 5888887777653
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.01 E-value=1.8e-07 Score=69.60 Aligned_cols=172 Identities=8% Similarity=-0.049 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..+...+..+...|++++|...+.+..+..... .... .....+..+...+...|++++|...+.+......
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-PEFQ--------QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC-HHHH--------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC-hhHH--------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 345566778889999999999999888753221 1110 1122344567778889999999999998875422
Q ss_pred C---Cc--hHHHHHHHHHHhccCCHHHHHHHHHHHH---HcC-CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 047518 152 K---PN--VVTYTSVIRGFCYANDWNEAKRLFIEMM---DQG-VQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQH- 219 (256)
Q Consensus 152 ~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 219 (256)
. +. ..+|+.+...|...|++++|...+++.. +.. ..+ ...++..+..+|...|++++|...+++..+.
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 11 4578889999999999999999999987 321 111 1258889999999999999999999987642
Q ss_pred ---CCCC-CHHhHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047518 220 ---GVRP-DAFTYNTLLDGFCLTGRVNHA-KELFVSME 252 (256)
Q Consensus 220 ---~~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 252 (256)
+... -..+|..+..+|.+.|+.++| ...+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2111 256788999999999999999 77677654
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.00 E-value=1.6e-09 Score=80.37 Aligned_cols=194 Identities=9% Similarity=-0.000 Sum_probs=108.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
+...+..+...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|+..++++.+. .
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~----------- 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--D----------- 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--C-----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C-----------
Confidence 45567777777788888888888888777653 235667777777888888888888888777764 1
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+...+..+..+|...|++++|...|....+.... +...+...+....+ ..++.. +..........+.....
T Consensus 69 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~ 141 (281)
T 2c2l_A 69 --GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHS 141 (281)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHH
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHH
Confidence 234566777777888888888888888776654210 00011111111111 111111 11122222333333333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAF-TYNTLLDGFCLT-GRVNHAKELFVSMES 253 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 253 (256)
.+.. + ..|+.++|.+.++...+. .|+.. ....+...+.+. +.+++|.++|++..+
T Consensus 142 ~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 142 YLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3322 2 257777777777766654 34433 333333333333 556777777766543
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.00 E-value=5.5e-08 Score=65.65 Aligned_cols=130 Identities=8% Similarity=-0.032 Sum_probs=105.7
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...+.+.....
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 77 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN---------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 77 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3467778888999999999999999988742 3456788889999999999999999999998875
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHhcCChhHHHHHHHHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF--NVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
. .+..++..+..++...|++++|...+++..+... .+...+ ...+..+...|++++|...+....
T Consensus 78 ~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 78 K-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 3 3677888999999999999999999999998642 244455 334444778899999999988765
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=2.2e-07 Score=69.16 Aligned_cols=170 Identities=12% Similarity=0.065 Sum_probs=125.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-----HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-----LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
+...+..+...|++++|.+.++...+...... ...+..+...+...|++++|+..+++..+........
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~------ 151 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV------ 151 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch------
Confidence 44567778899999999999998876532211 1234456667788899999999999988643221100
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD---K-NVKP--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-- 185 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-- 185 (256)
.....+++.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++..+..
T Consensus 152 ---~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 152 ---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp ---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 00134788999999999999999999998862 2 1111 12588889999999999999999999987531
Q ss_pred --CCC-cHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047518 186 --VQP-NVVTFNVIMDELCKNGKMDEA-SSLLDLMI 217 (256)
Q Consensus 186 --~~~-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~ 217 (256)
... -..+|..+..++...|++++| ...+++..
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111 167788999999999999999 77777665
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.99 E-value=1.4e-08 Score=71.04 Aligned_cols=161 Identities=11% Similarity=0.007 Sum_probs=86.4
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHH
Q 047518 48 KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127 (256)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~ 127 (256)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+.....+. .+....++..+.
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~ 73 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVG 73 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHH
Confidence 345555555533333221 1123345555555556666666666666555442100000 011233455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCc--HHHHHHH
Q 047518 128 DGLCKQGFVDKAKELFLKMKDK----NVKP--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPN--VVTFNVI 196 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l 196 (256)
..|...|++++|...+.+.... +..| ....+..+...+...|++++|...+++..... ..+. ..++..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 6677777777777777665432 2111 23456666677777788888888777766321 1111 2345667
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 047518 197 MDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~ 218 (256)
...+...|++++|.+.+++..+
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH
Confidence 7777888888888888776653
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.99 E-value=1.3e-08 Score=71.30 Aligned_cols=157 Identities=12% Similarity=0.053 Sum_probs=114.2
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CchH
Q 047518 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK-PNVV 156 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 156 (256)
...|++++|.+.++.+... | .....++..+...+...|++++|...+++.... +.. ....
T Consensus 3 ~~~g~~~~A~~~~~~~~~~---~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 67 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH---P------------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67 (203)
T ss_dssp ----CHHHHHHHHHHHHTS---T------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC---h------------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 4578889999865555331 1 123557888899999999999999999987652 222 2346
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCC-CH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HGVRP-DA 225 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~ 225 (256)
++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+ .+..+ ..
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 7788888999999999999999987753 2122 245678888999999999999999998763 22111 12
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.++..+...+...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3467888899999999999999887654
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=3e-08 Score=64.07 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=45.2
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
.+......+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.++.. +
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------------p 78 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---------------S 78 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---------------h
Confidence 34444445555555555555555544432 2234444445555555555555555555444421 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+...|..+..+|...|++++|...|++..+.
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23334444445555555555555555544443
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2e-08 Score=73.39 Aligned_cols=201 Identities=9% Similarity=-0.093 Sum_probs=141.7
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCHhhHHHH-------HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhh-------h
Q 047518 48 KNKHYDTVLSLFKRLNSTGLFPDLYTHSIL-------INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-------I 113 (256)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l 113 (256)
+.++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..++.... +.|+......- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999998874 2345677777 4555555555566555544443 34433222111 0
Q ss_pred hhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--H
Q 047518 114 KVC-KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--V 190 (256)
Q Consensus 114 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 190 (256)
... ..-...+..+...+...|++++|..+|..+...+ |+....-.+...+.+.+++++|+..++...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 001 1113345667788999999999999999988765 343355555667889999999999998665432 221 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4778889999999999999999999986433254 346777788999999999999999998764
No 136
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=5e-07 Score=67.35 Aligned_cols=199 Identities=8% Similarity=-0.006 Sum_probs=154.6
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHH----Hcc---CChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCL----AKN---KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
.++++++..++.+...+|. +..+|+.-...+ ... +++++++.+++.+.+.. +-+..+|+.-..++.+.+.
T Consensus 83 ~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~ 159 (306)
T 3dra_A 83 RNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDL 159 (306)
T ss_dssp SCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 4899999999999998876 777888766665 555 78999999999998875 4477889888888888899
Q ss_pred cc--hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCchHHH
Q 047518 87 VS--HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF------VDKAKELFLKMKDKNVKPNVVTY 158 (256)
Q Consensus 87 ~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~ 158 (256)
++ +++++++++++.. +.|-.+|+.......+.+. +++++..++.+....+. |...|
T Consensus 160 ~~~~~EL~~~~~~i~~d---------------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW 223 (306)
T 3dra_A 160 HNDAKELSFVDKVIDTD---------------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTW 223 (306)
T ss_dssp TTCHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHH
T ss_pred cChHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHH
Confidence 88 9999999998852 3566777777777777776 89999999999887655 78888
Q ss_pred HHHHHHHhccCCHHH-HHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 159 TSVIRGFCYANDWNE-AKRLFIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 159 ~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
+-+-..+.+.|+... +..+..++.+.+ -..+...+..++.++.+.|+.++|.++++.+.+.--+.....|...
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 888888878887444 555666665432 1346788999999999999999999999999863123344455443
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=1.1e-07 Score=60.72 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=93.1
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 4678888889999999999999999988742 2356678889999999999999999999998764
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
. .+..++..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 74 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 74 P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 3 367788899999999999999999999998864 2345555555555544
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.93 E-value=4.2e-08 Score=67.23 Aligned_cols=121 Identities=7% Similarity=0.075 Sum_probs=98.1
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
...|++++|+..+++..+. .+.+...|..+...|...|++++|...|++....... +...+..+
T Consensus 21 ~~~~~~~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 84 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---------------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAAL 84 (177)
T ss_dssp C-----CCCCHHHHHHHHH---------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 4567888899998888774 2346678899999999999999999999998876533 66777788
Q ss_pred HHH-HhccCCH--HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 162 IRG-FCYANDW--NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 162 i~~-~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..+ +...|++ ++|...+++..+.. +.+...+..+..++...|++++|...|+.+.+.
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888 7788998 99999999999874 335778889999999999999999999999886
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.93 E-value=1.1e-07 Score=61.13 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=99.8
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+......
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---------------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 45677888889999999999999999988741 345677888999999999999999999999876
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
.. .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 DP-AYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred Cc-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 43 357788889999999999999999999999874 33667788888888877764
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.93 E-value=3.6e-08 Score=65.78 Aligned_cols=99 Identities=15% Similarity=-0.019 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|++..+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44567778888999999999999999999875 4478899999999999999999999999999863 446788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 047518 234 GFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988753
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-07 Score=61.55 Aligned_cols=119 Identities=10% Similarity=-0.035 Sum_probs=85.6
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---------------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345677777888888888888888888877641 23456677778888888888888888888777
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 204 (256)
.... +...+..+..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 79 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 79 LEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred hCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 6432 56777778888888888888888888887753 223455566665555544
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=1.2e-08 Score=67.90 Aligned_cols=110 Identities=12% Similarity=0.001 Sum_probs=92.1
Q ss_pred hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
++...+...+.+...+..+...+...|++++|...|+........ +...|..+..+|...|++++|...+++..... +
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 344555444556677888899999999999999999999887543 77888889999999999999999999999874 3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+...+..+..++...|++++|...|+...+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36678888999999999999999999998864
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.88 E-value=1.1e-07 Score=66.39 Aligned_cols=133 Identities=11% Similarity=0.002 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---------------hHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN---------------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+..+...+...|++++|...|.+......... ...+..+..+|...|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34567788899999999999999999987533211 278888899999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH-HHHHHHHhc
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK-ELFVSMESM 254 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 254 (256)
. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++. ..++.|...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 4467889999999999999999999999998763 446778888888888888777776 555555443
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=3.2e-07 Score=57.83 Aligned_cols=111 Identities=13% Similarity=0.065 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...+..+...+...|++++|...|+....... .+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45677788899999999999999999987643 367788888899999999999999999999874 3467788899999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...|++++|...++...+.+ +.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 999999999999999998763 334555544443
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=6.3e-08 Score=64.44 Aligned_cols=109 Identities=8% Similarity=-0.023 Sum_probs=89.7
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.|+.+.... +.+...+..+...+...|++++|...++...... +.+...|..+..++...|++++|...|++.....
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344444432 1245667778888999999999999999999874 4478889999999999999999999999998763
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 222 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.+...+..+..+|...|++++|.+.|++..+
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44677889999999999999999999998765
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.87 E-value=1.5e-08 Score=80.82 Aligned_cols=125 Identities=11% Similarity=0.049 Sum_probs=101.8
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (256)
.+...|..+.+.|++++|++.|++..+..+. +..+|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4567889999999999999999999998765 78899999999999999999999999999874 34677899999999
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047518 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG--LCKQGFVDKAKELFL 144 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 144 (256)
...|++++|++.++++.+.. | .+...+..+..+ +.+.|++++|+..++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~--p-------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK--P-------------HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS--T-------------TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC--C-------------CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998852 2 233345555555 888899999999998
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.2e-07 Score=59.78 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...|..+...+.+.|++++|...|.+..+.... +...|..+..++...|++++|...+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 446777888999999999999999999887543 67889999999999999999999999999874 3467788999999
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 047518 200 LCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~ 219 (256)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.7e-07 Score=72.42 Aligned_cols=202 Identities=7% Similarity=-0.071 Sum_probs=142.2
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcc---------------cHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVS---------------SFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPD 70 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 70 (256)
+..+.+.|++++|++.|..+.+..+...+.. ++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455778999999999999998766533321 26788999999999999999999875431 1122
Q ss_pred H----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 71 L----YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 71 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
. .+.+.+...+...|+++.+..++........... ....-..++..+...|...|++++|..++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK---------RVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---------CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 2 2333344445567889999999988765310000 00112346778899999999999999999987
Q ss_pred HhC----C-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 047518 147 KDK----N-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPN--VVTFNVIMDELCKNGKMDEASSLLDL 215 (256)
Q Consensus 147 ~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (256)
... + .+....++..++..|...|++++|..+++..... +..+. ...+..+...+...|++++|...|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 642 1 1123467888999999999999999999987642 21111 34566677777889999999888876
Q ss_pred HH
Q 047518 216 MI 217 (256)
Q Consensus 216 ~~ 217 (256)
..
T Consensus 242 a~ 243 (434)
T 4b4t_Q 242 SF 243 (434)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=7.4e-09 Score=72.49 Aligned_cols=96 Identities=15% Similarity=-0.047 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
..|..+..+|.+.|++++|+..++....... .+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 3455666677777777777777777666532 255666667777777777777777777776653 23455666666666
Q ss_pred HhcCChhHHH-HHHHHHHH
Q 047518 201 CKNGKMDEAS-SLLDLMIQ 218 (256)
Q Consensus 201 ~~~g~~~~a~-~~~~~~~~ 218 (256)
...++..++. ..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666555 44444443
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.84 E-value=1.6e-07 Score=60.70 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCc----HHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPN----VVTF 193 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 193 (256)
...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++.++... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 346778899999999999999999999887543 678899999999999999999999999886421 111 2467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
..+..++...|++++|.+.|++.... .|++.+...+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 77888899999999999999998874 5676655443
No 151
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.84 E-value=3.2e-07 Score=75.83 Aligned_cols=205 Identities=10% Similarity=0.036 Sum_probs=151.1
Q ss_pred CcCChhhHH-HHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC---------CCCC-----------
Q 047518 12 TTITPNEAL-CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---------LFPD----------- 70 (256)
Q Consensus 12 ~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~----------- 70 (256)
..|+.++|. .+|++.....|. +...|...+....+.|++++|.++|+.+.... ..|+
T Consensus 355 ~~~~~~~a~r~il~rAi~~~P~--s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCIPN--SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 456778896 999999886653 66678888888999999999999999987631 0132
Q ss_pred -HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 047518 71 -LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKD 148 (256)
Q Consensus 71 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 148 (256)
..+|...+....+.|..+.|..+|.++.+.. | ......|...+..-.+. ++++.|..+|+...+
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~--~------------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK--K------------LVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG--G------------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--C------------CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2468888888888899999999999998750 1 11223343333333344 559999999999887
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
. .+-+...+...+......|+.+.|..+|+........+ ....|...+..-.+.|+.+.+.++.+++.+. .|+..
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~ 575 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVN 575 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCC
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCc
Confidence 6 33356667788888888899999999999999874321 4568888898889999999999999999875 34433
Q ss_pred hHHHHHHHH
Q 047518 227 TYNTLLDGF 235 (256)
Q Consensus 227 ~~~~l~~~~ 235 (256)
....++.-|
T Consensus 576 ~~~~f~~ry 584 (679)
T 4e6h_A 576 KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 444444433
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.83 E-value=7.7e-08 Score=63.46 Aligned_cols=99 Identities=9% Similarity=-0.112 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+...+..+...+.+.|++++|...|+......+. +...|..+..++...|++++|...++...... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4456677788999999999999999999887543 77888889999999999999999999999875 346678888999
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 047518 199 ELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~ 219 (256)
++...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=1.2e-08 Score=75.54 Aligned_cols=187 Identities=11% Similarity=0.059 Sum_probs=125.3
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|..+...|++++|+..|++.....|. +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 455677899999999999999998765 77889999999999999999999999998874 346778999999999999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
++++|...|++..+.. |+.. .......+..+ ...+. . -+........+.+......+ ..+
T Consensus 87 ~~~~A~~~~~~al~l~--p~~~--------~~~~~~~~~~~--~~~~~------~-~~~~~~~~~~~~~~~i~~~l-~~l 146 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLA--KEQR--------LNFGDDIPSAL--RIAKK------K-RWNSIEERRIHQESELHSYL-TRL 146 (281)
T ss_dssp CHHHHHHHHHHHHHHH--HHTT--------CCCCSHHHHHH--HHHHH------H-HHHHHHHTCCCCCCHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHhC--ccch--------hhHHHHHHHHH--HHHHH------H-HHHHHHHHHHhhhHHHHHHH-HHH
Confidence 9999999999988741 1110 00011111111 11111 1 12222233333344433333 222
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKN-GKMDEASSLLDLMIQ 218 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~ 218 (256)
..|+.++|.+.++...+. .|+ ......+...+.+. +.+++|.++|..+.+
T Consensus 147 -~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 368889998888887765 444 33344444444444 668889999987764
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.81 E-value=1.3e-07 Score=59.05 Aligned_cols=102 Identities=10% Similarity=0.027 Sum_probs=66.2
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. |+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~--------- 72 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--ED--------- 72 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CC---------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cc---------
Confidence 45566677777777777777777777776653 2345566667777777777777777777766641 11
Q ss_pred hcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCC
Q 047518 115 VCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKN 150 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 150 (256)
..+...+..+..++... |++++|...+.......
T Consensus 73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 73 --EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp --TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred --cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 01345566666677777 77777777777666553
No 155
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.3e-06 Score=68.50 Aligned_cols=201 Identities=9% Similarity=-0.063 Sum_probs=143.3
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCC----------------HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-C
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPD----------------LYTHSILINCFCKMGRVSHGFVVLGRILRSCFT-P 104 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 104 (256)
-...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+++.++.+.--. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35667889999999999999877532211 124778899999999999999999887763101 1
Q ss_pred chhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-chHHHHHHHHHHhccCCHHHHHHHHH
Q 047518 105 DVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD----KNVKP-NVVTYTSVIRGFCYANDWNEAKRLFI 179 (256)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 179 (256)
+.. ....+.+.+...+...|++++|..++..... .+..+ -..++..+...+...|++++|..+++
T Consensus 90 ~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 90 KSK----------TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HHH----------HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 100 0112344455566678999999999987653 22222 35677889999999999999999999
Q ss_pred HHHHc--CC---CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHhHHHHHHHHHhcCChhHHHHHH
Q 047518 180 EMMDQ--GV---QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HGVRPD--AFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 180 ~~~~~--~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
++... +. .....++..++..|...|++++|..+++.... .+.++. ...+..+...+...|++++|...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 98743 11 11256788899999999999999999988764 221222 235666677788889999999887
Q ss_pred HHHH
Q 047518 249 VSME 252 (256)
Q Consensus 249 ~~m~ 252 (256)
.+..
T Consensus 240 ~~a~ 243 (434)
T 4b4t_Q 240 FESF 243 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.5e-07 Score=59.50 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34567778888999999999999999999874 4468899999999999999999999999998863 446888999999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
++...|++++|...+++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.80 E-value=2.1e-07 Score=58.08 Aligned_cols=96 Identities=15% Similarity=0.012 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP--NVVTFNVIMD 198 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~ 198 (256)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34444555555555555555555555443221 33444445555555555555555555555432 11 2444445555
Q ss_pred HHHhc-CChhHHHHHHHHHHH
Q 047518 199 ELCKN-GKMDEASSLLDLMIQ 218 (256)
Q Consensus 199 ~~~~~-g~~~~a~~~~~~~~~ 218 (256)
++... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 55555 555555555555444
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.79 E-value=1.1e-05 Score=60.74 Aligned_cols=221 Identities=8% Similarity=-0.015 Sum_probs=159.0
Q ss_pred CcCChh-hHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC----------hHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 047518 12 TTITPN-EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH----------YDTVLSLFKRLNSTGLFPDLYTHSILINC 80 (256)
Q Consensus 12 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (256)
+.|.++ +|+.+++.+...+|. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345554 799999999997775 66778765444444333 678999999988764 3477788888888
Q ss_pred HHhcCC--cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCchHH
Q 047518 81 FCKMGR--VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF-VDKAKELFLKMKDKNVKPNVVT 157 (256)
Q Consensus 81 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 157 (256)
+...+. +++++.+++++.+. .+.|-.+|+.-.-.....|. +++++..++.+.+..+. |..+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~---------------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA 181 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA---------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 181 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred HhccCcccHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence 888774 78999999999885 24567788877777788888 69999999999988665 7777
Q ss_pred HHHHHHHHhcc--------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-----------CChhHHHHH
Q 047518 158 YTSVIRGFCYA--------------NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-----------GKMDEASSL 212 (256)
Q Consensus 158 ~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~ 212 (256)
|+.....+... +.++++++.+....... +-|...|+.+-..+.+. +.++++++.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 77666655544 45788999999998774 44777887665555555 457889999
Q ss_pred HHHHHHCCCCCCH-HhHHHHHH---HHHhcCChhHHHHHHHHHHhc
Q 047518 213 LDLMIQHGVRPDA-FTYNTLLD---GFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 213 ~~~~~~~~~~~~~-~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~ 254 (256)
++++.+. .|+. .++..++. .....|..+++..++.++++-
T Consensus 261 ~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 261 CKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 9998875 4443 33322222 222457778888888888753
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=2.3e-07 Score=61.13 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+...|++++|...++...... +.+...|..+..++...|++++|...|+.....+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34556667788899999999999999999874 3477889999999999999999999999998864 456778889999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...|++++|.+.+++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.78 E-value=2e-07 Score=59.95 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCc----HHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPN----VVTF 193 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 193 (256)
...+..+...+...|++++|...|........ .+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34677788999999999999999999987653 3677888899999999999999999999886531 122 6788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
..+..++...|++++|.+.|+...+. .|+......+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 88999999999999999999999885 457666666555443
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=5.4e-07 Score=58.70 Aligned_cols=101 Identities=14% Similarity=0.005 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
+.+...+..+...+...|++++|...|......... +...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 356778889999999999999999999998887543 67888999999999999999999999999875 3467889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..++...|++++|...|+...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999988753
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.77 E-value=5.6e-07 Score=56.65 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=51.3
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
.+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------~ 69 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---------------P 69 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------T
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---------------c
Confidence 44555555556666666666666655442 2244455555555555566666665555555431 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+...+..+..++...|++++|...++...+.
T Consensus 70 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 23344555555555555555555555555544
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=4.8e-07 Score=58.92 Aligned_cols=99 Identities=9% Similarity=-0.071 Sum_probs=87.8
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 232 (256)
.+...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788889999999999999999999999874 3467889999999999999999999999998864 44788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 047518 233 DGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+|...|++++|...+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999998765
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.2e-06 Score=57.77 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
+.+...+..+...+...|++++|...|++..+.... + ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 356778888999999999999999999999886432 2 6788888899999999999999999998874 3367788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
..+..++...|++++|...|++..+.. +.+...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 899999999999999999999998753 3345555544443
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.76 E-value=1.5e-07 Score=62.93 Aligned_cols=134 Identities=7% Similarity=0.020 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C--chHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-c
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK---P--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQP-N 189 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 189 (256)
..++..+...|...|++++|...+.+..+.... + ...++..+...+...|++++|...+++..+. +..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346778888999999999999999987653111 1 1246788888999999999999999998753 1111 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
...+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788888999999999999999887642 2111 234677888899999999999999988764
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=9.2e-07 Score=58.25 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=66.8
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhH
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD----LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (256)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|+..+++..+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-------- 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------
Confidence 34556677777777788888888888877765 344 4566667777777777777777777766531
Q ss_pred HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 110 TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 110 ~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+.+...+..+..++...|++++|...|++....
T Consensus 96 -------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 96 -------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 234455666666777777777777777766654
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=4.3e-07 Score=61.34 Aligned_cols=101 Identities=8% Similarity=-0.015 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
..+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..+++..+.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345667888999999999999999999999887543 77889999999999999999999999999875 3468889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..++...|++++|...|++..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=5.3e-07 Score=60.90 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+...|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55677788888889999999999999998874 3367888889999999999999999999988763 446788888999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...|++++|.+.|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 99999999999999988765
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.72 E-value=6e-07 Score=57.95 Aligned_cols=106 Identities=11% Similarity=0.058 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..+..+...+.+.|++++|+..|++.++. .+.+...|..+..+|.+.|++++|+..+++..+...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 46778899999999999999999999874 234677899999999999999999999998876421
Q ss_pred --CCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 152 --KPN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 152 --~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
.++ ..+|..+..++...|++++|+..+++.... .||.....
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 111 246777888899999999999999998875 45554443
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.69 E-value=2.4e-08 Score=79.23 Aligned_cols=144 Identities=13% Similarity=0.013 Sum_probs=77.3
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC--------------HhhHHHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD--------------LYTHSILIN 79 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 79 (256)
+++++|+..|+......+. ....|..+...+.+.|+++.|+..|++..+...... ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLE--QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444333222 445677777788888888888888887766421111 345555555
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
+|.+.|++++|+..++++++.. +.+..+|..+..+|...|++++|...|++..+.... +...+.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~ 389 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD---------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARL 389 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 5556666666666665555531 223445555555555566666666666555554322 334445
Q ss_pred HHHHHHhccCCHHHHH
Q 047518 160 SVIRGFCYANDWNEAK 175 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~ 175 (256)
.+..++...++.+++.
T Consensus 390 ~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 390 QISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554443
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.69 E-value=5.1e-07 Score=71.62 Aligned_cols=132 Identities=8% Similarity=-0.028 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--------------hHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--------------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
....|..+...|.+.|++++|...|.+..+...... ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345778889999999999999999999887533221 578889999999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH-HHHHHH
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE-LFVSME 252 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 252 (256)
. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+ .+++|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 3468889999999999999999999999999863 3355678888888988888887764 445443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.66 E-value=5.2e-07 Score=57.70 Aligned_cols=95 Identities=8% Similarity=-0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
+..+...+.+.|++++|...|+...+.... +...|..+..++...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445566677777777777777777765432 56666777777777777777777777777663 2245666777777777
Q ss_pred cCChhHHHHHHHHHHHC
Q 047518 203 NGKMDEASSLLDLMIQH 219 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~ 219 (256)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777653
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.66 E-value=5.6e-07 Score=57.82 Aligned_cols=113 Identities=9% Similarity=0.052 Sum_probs=90.1
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++......
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD---------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4567788889999999999999999998752 3456778889999999999999999999987653
Q ss_pred CC--Cc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 151 VK--PN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 151 ~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
.. ++ ..++..+..++...|++++|...++...+.. |+......+..+.
T Consensus 69 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 21 12 6778888999999999999999999999863 4655555544443
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.64 E-value=1.1e-05 Score=60.94 Aligned_cols=199 Identities=9% Similarity=-0.012 Sum_probs=143.3
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc-C-ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc----
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN-K-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS---- 88 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 88 (256)
.+++++..++.+....|. +..+|+.-...+.+. + ++++++.+++.+.+.. +-+..+|+.-.-++.+.+.++
T Consensus 104 ~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~ 180 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLK--SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISE 180 (349)
T ss_dssp CHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCH
T ss_pred hHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccch
Confidence 599999999999998775 888899888877776 7 8999999999999875 347778887777776666666
Q ss_pred ----hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCchHH
Q 047518 89 ----HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF-------VDKAKELFLKMKDKNVKPNVVT 157 (256)
Q Consensus 89 ----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 157 (256)
++++.++++++. .+.|..+|+.....+.+.+. +++++..+++.....+. |...
T Consensus 181 ~~~~eELe~~~k~I~~---------------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~Sa 244 (349)
T 3q7a_A 181 AQWGSELDWCNEMLRV---------------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSA 244 (349)
T ss_dssp HHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hhHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 788888888875 24577788888888877776 78999999988877554 7777
Q ss_pred HHHHHHHHhccCCH--------------------HHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHhcCChhHHHHH
Q 047518 158 YTSVIRGFCYANDW--------------------NEAKRLFIEMMDQG-----VQPNVVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 158 ~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
|+-+-..+.+.|.. .....+..++...+ -.++...+..+++.|...|+.++|.++
T Consensus 245 W~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~ 324 (349)
T 3q7a_A 245 WNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKV 324 (349)
T ss_dssp HHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHH
Confidence 76665555555543 22333333333221 135788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHH
Q 047518 213 LDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~ 232 (256)
++.+.+.--+....-|...+
T Consensus 325 ~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 325 FEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhhhChHHHHHHHHHH
Confidence 99997652233333444433
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=7.5e-07 Score=56.93 Aligned_cols=96 Identities=11% Similarity=-0.083 Sum_probs=82.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
.+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556677889999999999999999874 3478889999999999999999999999998863 446788999999999
Q ss_pred hcCChhHHHHHHHHHHhc
Q 047518 237 LTGRVNHAKELFVSMESM 254 (256)
Q Consensus 237 ~~g~~~~a~~~~~~m~~~ 254 (256)
..|++++|+..+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 176
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.58 E-value=4.5e-05 Score=61.05 Aligned_cols=125 Identities=10% Similarity=0.095 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY-ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
..|...+....+.++++.|..+|+.. .. ...+...|......-.. .++.+.|..+++...+.. +-+...|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 56777777777888999999999999 32 12244444432222222 336999999999998763 2234556777888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
....|+.+.|..+|+.+. .....|...+..=...|+.+.+.+++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999872 2567788888777788999999998887763
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.58 E-value=2.9e-07 Score=73.35 Aligned_cols=121 Identities=9% Similarity=-0.009 Sum_probs=96.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
+...+.+.|++++|...|++..+.... +..+|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 345677889999999999999887433 67889999999999999999999999999874 3467889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 047518 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDG--FCLTGRVNHAKELFV 249 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 249 (256)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998753 2234455555555 888899999999877
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.57 E-value=1.6e-06 Score=66.70 Aligned_cols=124 Identities=12% Similarity=-0.003 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDK---------------NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
..+..+...+.+.|++++|+..|++..+. -.+.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777889999999999999999988761 112245778889999999999999999999999874
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999998763 3467778888888888888877765
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.55 E-value=6.1e-07 Score=59.92 Aligned_cols=137 Identities=10% Similarity=-0.031 Sum_probs=70.3
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCC-CC----HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHh
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PD----LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (256)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.....+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 35666777777778888888877776543100 11 135666666777777777777777766542100000
Q ss_pred hhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 112 ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
.......+..+...+...|++++|...+++.... +.. ....++..+...+...|++++|...+++..
T Consensus 85 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 85 ----RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 0001234455555666666666666666554321 100 012233444444444455555544444443
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=1.2e-05 Score=51.54 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---HHHHHHHH
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV---VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN---VVTFNVIM 197 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll 197 (256)
..+...+...|++++|...|+...+.... +. ..+..+..++...|++++|...++...+.... + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 44567888999999999999999876432 23 57778888999999999999999999986422 2 56788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047518 198 DELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.++...|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=6.2e-06 Score=52.90 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=58.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
+..+...+...|++++|...|+...+... .+. ..+..+..++...|++++|...++++.+.. |+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~--------- 72 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTH--------- 72 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTS---------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCC---------
Confidence 44455666677777777777777665421 122 356666666777777777777777766531 110
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.....++..+..++...|++++|...|+.+...
T Consensus 73 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 73 -DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp -TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 000344555666666777777777777766654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=4.4e-06 Score=56.20 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDK--------N---------VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
...+......+.+.|++++|+..|...... . .+.+...|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677788999999999999999988764 1 01134678888999999999999999999999
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 183 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+.. +.+...|..+..++...|++++|...|+...+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 874 446788999999999999999999999999875
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.47 E-value=1.6e-06 Score=69.06 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=96.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-----C--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CCc-HHHHH
Q 047518 129 GLCKQGFVDKAKELFLKMKDK-----N--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GV-QPN-VVTFN 194 (256)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 194 (256)
.+...|++++|+.++++..+. | .+....+++.+...|...|++++|+.++++.... |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887642 2 1123467899999999999999999999987742 21 222 56789
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-----CCC-CC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQ-----HGV-RP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.|...|...|++++|+.++++..+ .|- .| ...+...+..++...+.+++|..+++++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 231 12 234566777788889999999999999876
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=5.2e-07 Score=57.24 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHH
Q 047518 132 KQGFVDKAKELFLKMKDKN--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 209 (256)
..|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...+++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998874 22356778888899999999999999999999875 33577888899999999999999
Q ss_pred HHHHHHHHHC
Q 047518 210 SSLLDLMIQH 219 (256)
Q Consensus 210 ~~~~~~~~~~ 219 (256)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=8.1e-06 Score=54.85 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=85.3
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhc------CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRS------CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
...+......+.+.|++++|+..|.+.++. ...|+...+. ...+.+...|..+..+|.+.|++++|+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWV---ELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHH---HHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHH---HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345667777888888888888888887763 0011111100 0012345678899999999999999999999
Q ss_pred HHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH
Q 047518 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 190 (256)
........ +...|..+..+|...|++++|...++...+. .|+.
T Consensus 88 ~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 88 EVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 99887543 7788999999999999999999999999987 4543
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.45 E-value=5.2e-06 Score=63.91 Aligned_cols=138 Identities=10% Similarity=-0.037 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..+..+...+.+.|++++|+..|+++++.--. +............+.+...|..+..+|.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34677788888999999999999888762000 00000000000112345678899999999999999999999999875
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
.. +...|..+..+|...|++++|...+++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67888999999999999999999999999874 2356677777777777777766654
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.44 E-value=1.3e-06 Score=66.53 Aligned_cols=131 Identities=11% Similarity=-0.022 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH------------------HHHHHHHHHhccCCHHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV------------------TYTSVIRGFCYANDWNEAKRLFIEM 181 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~~ 181 (256)
...+..+...+.+.|++++|...|.+..... |+.. .|..+..+|.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4467778889999999999999999987653 3332 7888899999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHhcCChhHHHHHHHHHHhc
Q 047518 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG-FCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 182 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 254 (256)
++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+++.++|++|.+.
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9874 3467889999999999999999999999987642 2234455555544 23456677788888877653
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=1.8e-05 Score=64.46 Aligned_cols=172 Identities=9% Similarity=-0.031 Sum_probs=124.9
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC----------hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH----------YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.++|++.++++...+|. +..+|+.--..+...|+ +++++..++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 35678888888887775 67778877777766666 888888888888765 336678888777888888
Q ss_pred --CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 86 --RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG-FVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 86 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
+++++++.++++.+.. +.+..+|+.-.-++.+.| .++++++.++++.+..+. +..+|+...
T Consensus 122 ~~~~~~el~~~~k~l~~d---------------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~ 185 (567)
T 1dce_A 122 EPNWARELELCARFLEAD---------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS 185 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhc---------------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHH
Confidence 5588888888888742 346667777777777777 788888888888877654 666776666
Q ss_pred HHHhcc--------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 163 RGFCYA--------------NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 163 ~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
..+.+. +.++++++.+++..... +-|...|...-..+.+.++.+
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 665543 45677888887777664 336677777776666666533
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=8.8e-07 Score=56.17 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
..++..+..+|...|++++|...|++..+..+. +..++..+..++...|++++|...+++....
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555555555555555555554322 3444555555555555555555555555543
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=2.7e-05 Score=50.85 Aligned_cols=111 Identities=10% Similarity=-0.065 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChhHH
Q 047518 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEA 209 (256)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a 209 (256)
+++++|...|.+..+.|.. +.. +-..|...+..++|..++++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 5688999999999988732 332 6677777788899999999999875 56778888888888 8899999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 047518 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMESMG 255 (256)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 255 (256)
.+.|++..+.| ++..+..|...|.. .++.++|.+++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999999876 67778888888988 899999999999988776
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=0.00022 Score=53.60 Aligned_cols=189 Identities=10% Similarity=-0.038 Sum_probs=135.6
Q ss_pred HccCCh-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------cchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 47 AKNKHY-DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR----------VSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 47 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
.+.|.+ ++|+.+++.+.... +-+..+|+.--..+...+. +++++.+++.+...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---------------
Confidence 455665 48999999999874 2244566655444443333 45666777766653
Q ss_pred cCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCcHHH
Q 047518 116 CKPDAITYNTIIDGLCKQG--FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEAKRLFIEMMDQGVQPNVVT 192 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 192 (256)
.+.+..+|+.-.-.+.+.+ .+++++.+++.+.+..+. |..+|+--.-.+...|. ++++++.++.+.+..+ -|...
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SA 181 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSS 181 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHH
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHH
Confidence 3567778888777777777 489999999999988765 77788877777778888 6899999999998763 47778
Q ss_pred HHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-----------CChhHHHHH
Q 047518 193 FNVIMDELCKN--------------GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT-----------GRVNHAKEL 247 (256)
Q Consensus 193 ~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~ 247 (256)
|+.....+... +.++++.+.+....... +-|...|+-+-..+.+. +..+++++.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 87777666655 45788899998888753 55777777555555444 346788888
Q ss_pred HHHHHhc
Q 047518 248 FVSMESM 254 (256)
Q Consensus 248 ~~~m~~~ 254 (256)
++++.+.
T Consensus 261 ~~elle~ 267 (331)
T 3dss_A 261 CKELQEL 267 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877653
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.41 E-value=1.9e-06 Score=65.51 Aligned_cols=147 Identities=9% Similarity=-0.010 Sum_probs=66.5
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
..+..+...+.+.|+++.|...|++.... .|+... +...++..++...+ .
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~------------------ 229 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K------------------ 229 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H------------------
Confidence 34666777788888888888888887664 233321 11111111111111 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
...|..+..+|.+.|++++|+..++....... .+...|..+..+|...|++++|...|++..+.. +-+...+..+
T Consensus 230 ---~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L 304 (338)
T 2if4_A 230 ---NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRREL 304 (338)
T ss_dssp ---THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 11455566666777777777777776665532 255666666677777777777777777666542 1123333333
Q ss_pred HHH-HHhcCChhHHHHHHHHHHH
Q 047518 197 MDE-LCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 197 l~~-~~~~g~~~~a~~~~~~~~~ 218 (256)
... ....+..+++..+|..+..
T Consensus 305 ~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 305 RALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 333 2234455666666666654
No 193
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.41 E-value=0.00013 Score=58.40 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=79.5
Q ss_pred hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH-----------------------------
Q 047518 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY----------------------------- 158 (256)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------- 158 (256)
+|...+..++.+...|...+..+.+.|++++|..+|++.... +.+...+
T Consensus 201 ~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 201 IHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 444455556667788888888888899999999999887766 2222211
Q ss_pred -----------HHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHH
Q 047518 159 -----------TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK-NGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 159 -----------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
...+....+.++.+.|..+|+.. ... ..+...|...+..-.. .++.+.|..+|+...+.- +-++.
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~ 355 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTL 355 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHH
Confidence 11122222345566677777766 221 1233334322222222 225777777777766542 22344
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
.+...++...+.|+.+.|..+|++.
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555566566677777777776653
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.39 E-value=3.9e-06 Score=66.83 Aligned_cols=131 Identities=8% Similarity=0.003 Sum_probs=91.0
Q ss_pred HHHccCChHHHHHHHHHHhhC---CCCC----CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 45 CLAKNKHYDTVLSLFKRLNST---GLFP----DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 45 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
.+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++.++. +...+....
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i--------~~~~lG~~H 389 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG--------YMKLYHHNN 389 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHSCTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------HHHHcCCCC
Confidence 456889999999999887543 1112 2458999999999999999999999988763 111111111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 118 P-DAITYNTIIDGLCKQGFVDKAKELFLKMKD-----KNV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 118 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
| ...+++.|...|...|++++|+.++++..+ .|. +....+.+.+-.++...+.+.+|+.++..+.+
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 245688888999999999999998887653 232 11233455566666777778888888877764
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=2e-05 Score=52.33 Aligned_cols=98 Identities=9% Similarity=-0.024 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------c-----hHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP------N-----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----- 184 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 184 (256)
..+......+.+.|++++|+..|++..+..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345666788889999999999999987754321 2 237888888889999999999999988875
Q ss_pred CCCC-cHHHH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 185 GVQP-NVVTF----NVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 185 ~~~~-~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+.| +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1133 45577 7888888899999999999988764
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.31 E-value=2e-05 Score=52.32 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC------c-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP------N-----VVTFNVIMDELCKNGKMDEASSLLDLMIQH----- 219 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 219 (256)
..+......+...|++++|+..|++.++..... + ...|.....++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345556677788999999999999999763221 2 238999999999999999999999999874
Q ss_pred CCCCC-HHhH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 220 GVRPD-AFTY----NTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 220 ~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+.|+ ...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11454 4577 8889999999999999999998765
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.29 E-value=7.9e-05 Score=60.67 Aligned_cols=175 Identities=10% Similarity=-0.051 Sum_probs=135.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------cchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 49 NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR----------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
....++|++.++.+.... +-+..+|+.--.++...++ ++++++.++++.+. .+.
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---------------~pK 105 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---------------NPK 105 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------------CTT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------------CCC
Confidence 334578899999998874 2355677777777766666 78888888888874 245
Q ss_pred CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 119 DAITYNTIIDGLCKQG--FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
+..+|+.-.-++.+.+ ++++++..++++.+.... +..+|+.....+.+.| .++++++.++++.+..+ -|...|+.
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~ 183 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY 183 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHH
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHH
Confidence 6778888888888899 779999999999998765 7888888888888888 89999999999998753 47788888
Q ss_pred HHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 047518 196 IMDELCKN--------------GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 196 ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 242 (256)
....+... +.++++.+.++...... +-+...|..+-..+.+.++.+
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 77777663 45788999998888753 446778887777777766643
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.28 E-value=5.3e-06 Score=52.25 Aligned_cols=81 Identities=10% Similarity=-0.037 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 96 (256)
+.|+..|++..+..|. +...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688899999887664 77889999999999999999999999998864 34567899999999999999999999999
Q ss_pred HHhc
Q 047518 97 ILRS 100 (256)
Q Consensus 97 ~~~~ 100 (256)
..+.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.28 E-value=3.9e-05 Score=50.10 Aligned_cols=113 Identities=5% Similarity=-0.109 Sum_probs=73.0
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCc
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----MGRV 87 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 87 (256)
..+++++|++.|++..+.+.. +. . +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~--~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEM--FG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT--TH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CccCHHHHHHHHHHHHcCCCH--hh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 345677777777777765532 32 2 5566666666777777777777654 45566666666666 6677
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 150 (256)
++|+.+|++..+.| ++..+..|...|.. .+++++|...|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g-----------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN-----------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777776643 34455566666666 667777777777666655
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.8e-06 Score=53.87 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
..+..+...+...|++++|...|++....... +...+..+..++...|++++|...+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444445555555555555555554443221 334444444444555555555555555444
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.20 E-value=2.7e-06 Score=56.40 Aligned_cols=89 Identities=6% Similarity=-0.019 Sum_probs=75.1
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh----------HHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY----------DTVLSLFKRLNSTGLFPDLYTHSILI 78 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~ 78 (256)
..-+.+.+++|++.++...+..|. +...|..+..++.+.+++ ++|+..|++..+.. +.+..+|..+.
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG 87 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIG 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 445667899999999999998886 888899899899888775 59999999998874 23567899999
Q ss_pred HHHHhcC-----------CcchHHHHHHHHHhc
Q 047518 79 NCFCKMG-----------RVSHGFVVLGRILRS 100 (256)
Q Consensus 79 ~~~~~~~-----------~~~~a~~~~~~~~~~ 100 (256)
.+|...| ++++|++.|++.++.
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 9998774 899999999999985
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.8e-05 Score=49.14 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-------AF 226 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 226 (256)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 56678888899999999999999999999874 346788999999999999999999999999975 343 66
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
.+..+..++...|+.+.|...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 778888888888888777665443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.13 E-value=3.8e-05 Score=48.19 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.|+..|+...+... .+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...|+...
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57778888877654 367788889999999999999999999999874 3457788899999999999999999999887
Q ss_pred HC
Q 047518 218 QH 219 (256)
Q Consensus 218 ~~ 219 (256)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.10 E-value=6.8e-05 Score=44.56 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
.+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4444455555555555555555555443221 3344444445555555555555555555443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=8.8e-05 Score=44.03 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45677788888999999999999999999874 3467788899999999999999999999998753 346667777776
Q ss_pred HHHhcC
Q 047518 234 GFCLTG 239 (256)
Q Consensus 234 ~~~~~g 239 (256)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665543
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.93 E-value=0.00011 Score=44.91 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.+...+..+..+|...|++++|+..|++..+.... +...|..+..+|...|++++|...+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566777777777888888888888777766433 555677777777777888877777777664
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.90 E-value=0.0001 Score=45.01 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLL 232 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~ 232 (256)
+...+..+..+|...|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 56778888899999999999999999999875 3356788899999999999999999999877531 123555555555
Q ss_pred HHHHhcCC
Q 047518 233 DGFCLTGR 240 (256)
Q Consensus 233 ~~~~~~g~ 240 (256)
..+.+.+.
T Consensus 85 ~~l~~~~~ 92 (100)
T 3ma5_A 85 DAKLKAEG 92 (100)
T ss_dssp HHHHHHHT
T ss_pred HHHHHccc
Confidence 55544433
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.84 E-value=7.5e-05 Score=49.50 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=78.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH----------HHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW----------NEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
.+.+.+++|...++...+.... +...|..+-.++...+++ ++|+..|++.++.. +-+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556789999999998887644 777888787788777664 59999999999874 23567888899998
Q ss_pred HhcC-----------ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047518 201 CKNG-----------KMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235 (256)
Q Consensus 201 ~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (256)
...| ++++|.+.|++..+. .|+...|...+...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 8764 899999999999885 67766666655543
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.73 E-value=0.00032 Score=55.01 Aligned_cols=87 Identities=7% Similarity=-0.109 Sum_probs=66.2
Q ss_pred ccCCHHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CC-CCCC-HHhHHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQ---GVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQ-----HG-VRPD-AFTYNTLL 232 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~-~~~~-~~~~~~l~ 232 (256)
..|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.++++..+ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887742 12222 46788999999999999999999988764 22 1222 34688899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 047518 233 DGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999887654
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.65 E-value=0.00071 Score=53.08 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=57.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CC-CCC-CHHh
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQ---GVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQ-----HG-VRP-DAFT 227 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~-~~~-~~~~ 227 (256)
+..+...|++++|+..+++..+. -+.|+ ..+++.+...|...|++++|+.++++..+ .| ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667777777777777642 11122 45667777777777777777777776653 11 112 2335
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6777777777777777777776654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.61 E-value=0.0043 Score=47.15 Aligned_cols=138 Identities=9% Similarity=0.036 Sum_probs=67.8
Q ss_pred CCcccHHHHHHHHHc--cC---ChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHh---cCCcch-HHHHHHHHHhcCCC
Q 047518 34 PPVSSFNIMLGCLAK--NK---HYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCK---MGRVSH-GFVVLGRILRSCFT 103 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~-a~~~~~~~~~~~~~ 103 (256)
.+...|...+++... .+ +..+|..+|++..+. .|+ ...|..+..+|.. .+.+.. ...-+....+.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a--- 266 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN--- 266 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH---
Confidence 466778777765543 22 347888888888876 344 3455544444431 111110 00000100000
Q ss_pred CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 104 PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 104 ~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
...+...+.++.+|.++...+...|++++|...+++....+ |+...|..+-..+...|++++|.+.+++...
T Consensus 267 ------~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 267 ------IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp ------HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00001123444555555555555566666666666665553 4555555555555556666666666666555
Q ss_pred c
Q 047518 184 Q 184 (256)
Q Consensus 184 ~ 184 (256)
.
T Consensus 339 L 339 (372)
T 3ly7_A 339 L 339 (372)
T ss_dssp H
T ss_pred c
Confidence 4
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.59 E-value=0.00047 Score=54.07 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=68.8
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC----chHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-CCCc-HHHHHHHH
Q 047518 132 KQGFVDKAKELFLKMKDK---NVKP----NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----G-VQPN-VVTFNVIM 197 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~ll 197 (256)
..|++++|+.++++..+. -+.| ...+++.+..+|...|++++|+.++++.... | -.|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999887542 1222 2467899999999999999999999998742 2 1233 55789999
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 047518 198 DELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.56 E-value=0.00069 Score=53.15 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=72.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----chHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-CCCc-HHH
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKN---VKP----NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----G-VQPN-VVT 192 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 192 (256)
+..+.+.|++++|+..+++..+.. ..| ...+++.+...|...|++++|+.++++.... | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455677899999999999887531 122 3467899999999999999999999988742 2 1222 557
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
++.+...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999998764
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.51 E-value=0.0028 Score=53.80 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+...|..+...+.+.++++.|.++|..+.+ |..+...+...|+.+....+.+.....|. ++....
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~ 744 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFN 744 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHH
Confidence 455667777777777777777777776543 23344444456666665555555554431 233344
Q ss_pred HHHhcCChhHHHHHHHHH
Q 047518 199 ELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~ 216 (256)
++.+.|++++|.+++.++
T Consensus 745 ~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHc
Confidence 455667777777776554
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.46 E-value=0.005 Score=52.28 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=30.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
....|++++|.++.+.+ .+...|..+...+.+.++++.|++.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 45567777776665433 255667777777777777777777776653
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.32 E-value=0.0045 Score=47.06 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=86.0
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc---C--C---hHHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhc
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN---K--H---YDTVLSLFKRLNS-TGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 84 (256)
.+..+|+.+|++..+..|. ....|..+..++... + . .......++.... ...+.+..+|..+...+...
T Consensus 213 ~~~~~A~~l~e~Al~lDP~--~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPE--FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 4468899999999998875 555565544444311 1 1 1111112222111 11245677888887777778
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
|++++|...+++++..+ |+...|..+...+.-.|++++|...|.+....+ |...+|.
T Consensus 291 gd~d~A~~~l~rAl~Ln----------------~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~ 347 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLE----------------MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHH
T ss_pred CCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHH
Confidence 99999999999999863 455567778889999999999999999988864 4555654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.00095 Score=40.24 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=48.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 66 (256)
|..+...|++++|+..|++..+..|. +.. .|..+..++...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44566789999999999999887765 666 88888999999999999999999988764
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.29 E-value=0.0042 Score=37.23 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=55.1
Q ss_pred CCchHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 152 KPNVVTYTSVIRGFCYAND---WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
+.+...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3466777777777765555 799999999999875 3467888888899999999999999999999863
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.26 E-value=0.003 Score=37.98 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+.+.|++++|...|+...+.... +.. .+..+..++...|++++|...+++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566677777777777776665332 445 6666666777777777777777777665
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.021 Score=38.46 Aligned_cols=130 Identities=19% Similarity=0.161 Sum_probs=81.8
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (256)
.....+.|+++.|.++.+.+ .+...|..|.......|+++-|+..|++...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------------- 62 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------------------- 62 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------------------
Confidence 44556778888888887765 2567888888888888888888888877654
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
+..+.-.|.-.|+.+.-.++-+.....|- ++.....+...|+++++.+++.+.-+ -|.. ......
T Consensus 63 ~~~L~~Ly~~tg~~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t 127 (177)
T 3mkq_B 63 FDKLSFLYLVTGDVNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKA 127 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHH
Confidence 34455566667777766666555554432 34444555667888888877744322 1211 111223
Q ss_pred cCChhHHHHHHHHH
Q 047518 203 NGKMDEASSLLDLM 216 (256)
Q Consensus 203 ~g~~~~a~~~~~~~ 216 (256)
.|-.+.|.++.+.+
T Consensus 128 ~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 128 NGDEAAASAFLEQA 141 (177)
T ss_dssp TTCHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHh
Confidence 55566666666654
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.21 E-value=0.0013 Score=43.23 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=74.8
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC---ChHHHHHHHHHHhhCCCCC--CHhhHHHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK---HYDTVLSLFKRLNSTGLFP--DLYTHSILINC 80 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 80 (256)
.....+..+....+.+-|.+....++ ++..+...+..++++.+ +.++++.+++...+.. .| ....+..+.-+
T Consensus 4 ~l~~~l~~~~l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 4 VLNELVSVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG 80 (152)
T ss_dssp CCSCSCCHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHH
Confidence 34566677778888888988877665 58888888999999988 5669999999998874 24 35666777788
Q ss_pred HHhcCCcchHHHHHHHHHhc
Q 047518 81 FCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~ 100 (256)
|.+.+++++|.++++.+++.
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhc
Confidence 99999999999999999985
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.16 E-value=0.0057 Score=36.60 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 117 KPDAITYNTIIDGLCKQGF---VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
+.++..+..+..++...++ .++|..++++..+.... +..+...+...+...|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567778888888765555 79999999999987654 77788888889999999999999999999874
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.09 E-value=0.022 Score=36.35 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
.+|++......+-.+-. +...+...++.....|..++-.+++.++... .+|+......+..+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHH
Confidence 45666666665554432 4445667777778888888888888886443 36777788888888888888888888
Q ss_pred HHHHHHHCCCC
Q 047518 212 LLDLMIQHGVR 222 (256)
Q Consensus 212 ~~~~~~~~~~~ 222 (256)
++.+..+.|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 88888887754
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.91 E-value=0.027 Score=34.33 Aligned_cols=66 Identities=8% Similarity=-0.064 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKN------VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+..-+..+...+.+.++++.|...|+...+.- ..+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677778888888888888887765431 1234566777777777777777777777777765
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.87 E-value=0.023 Score=37.28 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCChhHH
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN---DWNEAKRLFIEMMDQGVQP--NVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a 209 (256)
....+.+-|.+..+.+. ++..+...+..++++.+ +.+++..+++...+.. .| +...+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34566777777766665 57777777777888877 6668999999988874 34 356667777788999999999
Q ss_pred HHHHHHHHHCCCCCC
Q 047518 210 SSLLDLMIQHGVRPD 224 (256)
Q Consensus 210 ~~~~~~~~~~~~~~~ 224 (256)
.+.++.+.+. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 9999999885 554
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.81 E-value=0.013 Score=35.77 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=57.8
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 225 (256)
.+...+..+...+...+++..|...++...+.. -.+....+..+..++.+.|+++.|...++++.+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 355566778888999999999999999988641 1345778899999999999999999999999986 4543
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.67 E-value=0.056 Score=34.58 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=87.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-C----------------CCCcHHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-G----------------VQPNVVT 192 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~----------------~~~~~~~ 192 (256)
+.-.|..++..++..+..... +..-||.+|.-....-+-+-..++++.+-+. . ...+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~ 93 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 93 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHH
Confidence 455788888888888876642 3334455554433333444444444433211 0 1234566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
++..++.+...|+-++-.+++..+... -+|++.....+..+|.+.|+..+|.+++++.-++|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 788889999999999999999996553 478999999999999999999999999999999885
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.67 E-value=0.051 Score=35.41 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCchH-HHHHHHH------HHhccCCHHHHHHHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFV------DKAKELFLKMKDKNVKPNVV-TYTSVIR------GFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~~ 183 (256)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...|. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888998 8888999988764 445421 1111111 12344899999999999987
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 184 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
.+-.. ...|......-.+.|+...|.+++......+..| .......++-
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 64343 7788888888889999999999999999876444 4445544443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.076 Score=35.77 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 047518 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 181 (256)
...|+++.|.++.+.+ .+...|..+.......|+++-|...|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 13444555555555555555555554443
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.42 E-value=0.067 Score=39.22 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCCC--CcHH
Q 047518 120 AITYNTIIDGLCK-----QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQ--PNVV 191 (256)
Q Consensus 120 ~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~ 191 (256)
...|..+...|.+ .|+.++|...|++..+.+..-+..++......++.. |+.+.+.+.+++....... |+..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 5678888999988 499999999999998875432466777788888774 9999999999999987655 6654
Q ss_pred HHHH
Q 047518 192 TFNV 195 (256)
Q Consensus 192 ~~~~ 195 (256)
..+.
T Consensus 279 lan~ 282 (301)
T 3u64_A 279 LLVI 282 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.058 Score=45.29 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHHc------CCCCc----
Q 047518 122 TYNTIIDGLCKQGF-VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQ------GVQPN---- 189 (256)
Q Consensus 122 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~~---- 189 (256)
.-..++..+...++ ++.|..+|+++.......+......++..+.+.+ +--+|.+++.+..+. ...+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34556666666766 5889999999988743322222333444433333 233455555554421 11111
Q ss_pred -------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 190 -------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 190 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
......-...|...|+++-|+++-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112333345577899999999999999875 2456889999999999999999999888765
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.21 E-value=0.055 Score=34.18 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=64.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHH---HHHHHHHHHHcCCCC--cHHHHHHHHHHH
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE---AKRLFIEMMDQGVQP--NVVTFNVIMDEL 200 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~~ 200 (256)
++...........+.+-|......|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .......+.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 33444445556667777776666554 566666667777777777666 888888887764 23 345566677788
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 047518 201 CKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~ 219 (256)
.+.|++++|.+.++.+.+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 8999999999999998875
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.20 E-value=0.021 Score=41.81 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=73.4
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
.-.-+....|...+++..+..|.-.+-..|..+...|.+ -|+.++|.+.|++..+.+..-+..++......+++.
T Consensus 173 ~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 173 SALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred hHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Confidence 334456678899999999977653345689999999998 499999999999999874322467788888888884
Q ss_pred -CCcchHHHHHHHHHhcC
Q 047518 85 -GRVSHGFVVLGRILRSC 101 (256)
Q Consensus 85 -~~~~~a~~~~~~~~~~~ 101 (256)
|+.+.+.+.+++.+...
T Consensus 253 ~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 253 LNNRAGFDEALDRALAID 270 (301)
T ss_dssp TTCHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHcCC
Confidence 99999999999999864
No 234
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=96.08 E-value=0.1 Score=31.29 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+.-+..+.++.+....+.|+.....+.+++|.+.+++..|.++|+.+..+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45556666666666666677777777777777777777777777666543 2223334555544
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.04 E-value=0.067 Score=33.80 Aligned_cols=82 Identities=15% Similarity=0.020 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCChhHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE---ASSLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVNHA 244 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 244 (256)
....+.+-+.+....|. ++..+--.+..++.++..... ++.+++++.+.+ .| .......+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444544444332 455555555556665555444 556666655542 12 223344445566666666666
Q ss_pred HHHHHHHHh
Q 047518 245 KELFVSMES 253 (256)
Q Consensus 245 ~~~~~~m~~ 253 (256)
.+.++.+.+
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.93 E-value=0.18 Score=32.89 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHhccCCH------HHHHHHHHHHHHcCCCCcHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHCC
Q 047518 154 NVVTYTSVIRGFCYANDW------NEAKRLFIEMMDQGVQPNVV-TFNVIMD------ELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~------~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
|..+|-..+....+.|++ +...++|++.... ++|+.. .|...+. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666666666777 7777888888765 455421 1111111 1234589999999999998753
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
-.. ...|....+.=.+.|+...|.+++.+.+..|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 333 6677777777789999999999998877654
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.80 E-value=0.51 Score=42.08 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=126.7
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCch------hhHHh
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV------VTFTS 111 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 111 (256)
....++..+...+.++.+.++...... +...--.+..++...|++++|...|++... |+..+. .....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 344566777778888877765544332 334445677889999999999999987643 222211 11111
Q ss_pred hhh---hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 112 LIK---VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 112 ll~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+.. ....-..-|..++..+.+.+.++.+.++-....+...+-+ ...|..+.+++...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 111 1122345688899999999999999988876654322111 235788999999999999999999888765
Q ss_pred CCCCcHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHH-C-CCCCCHHhHHHHHHHHHhcCChhHHHHH-HH
Q 047518 185 GVQPNVVTFNVIMDELCKNGK------------MDEASSLLDLMIQ-H-GVRPDAFTYNTLLDGFCLTGRVNHAKEL-FV 249 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~------------~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~ 249 (256)
.. -......++..++..|. .++..+++..-.+ . .+...+.-|..|=.-+...|++.+|-.+ |+
T Consensus 968 ~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 968 PL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp SS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHH
Confidence 43 34567777777776654 3444555543221 1 1111223345554555667777766553 44
Q ss_pred HH
Q 047518 250 SM 251 (256)
Q Consensus 250 ~m 251 (256)
..
T Consensus 1046 ~~ 1047 (1139)
T 4fhn_B 1046 KL 1047 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 238
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.54 E-value=0.24 Score=31.49 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
|.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+-...+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45556666666666777777777888888888888888888887777643 2333445666554
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.18 E-value=0.19 Score=38.89 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=53.8
Q ss_pred cCCcchHHHHHHHHHhcCCC---Cchhh--H----HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 047518 84 MGRVSHGFVVLGRILRSCFT---PDVVT--F----TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~---~~~~~--~----~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
.|+.+.+...+.++....-- ++... | ..-+. ..-..+...++.++...|++++|...+..+.... +.+
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~--~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~ 204 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALV--EDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYR 204 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 47777888888887764211 11100 0 00000 0001122334455556666666666666555443 235
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCcHHH
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMD-----QGVQPNVVT 192 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 192 (256)
...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 205 E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 205 EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 55666666666666666666666665542 355665444
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.24 E-value=0.48 Score=28.47 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=53.5
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 129 GLCKQG-FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 129 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
.|.+.. +.=+..+.++.+....+.|++....+.+++|.+.+++..|.++++-++.. +.+...+|..++.
T Consensus 18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 344444 55678888888888888999999999999999999999999999998855 2334455766654
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.60 E-value=0.00042 Score=54.29 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|.+.+..+++.+|++.|=+. .|+..|..++..+.+.|.+++-++.+...++..- ++.+=+.|+-+|++.++
T Consensus 61 gkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 61 AKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNR 131 (624)
T ss_dssp HHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCS
T ss_pred HHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCc
Confidence 55556666666666655322 4666788999999999999999988887766533 33444578888998888
Q ss_pred cchHH
Q 047518 87 VSHGF 91 (256)
Q Consensus 87 ~~~a~ 91 (256)
+.+-.
T Consensus 132 L~elE 136 (624)
T 3lvg_A 132 LAELE 136 (624)
T ss_dssp SSTTT
T ss_pred HHHHH
Confidence 76543
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.16 E-value=1 Score=28.71 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+.-+..+-++.+...++.|++......+++|.+.+++..|.++++-++.+ +.+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45567777888888888899999999999999999999999999988865 3344556766654
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.09 E-value=1 Score=28.62 Aligned_cols=73 Identities=10% Similarity=0.138 Sum_probs=50.3
Q ss_pred CCCCchHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047518 150 NVKPNVVTYTSVIRGFCYAND---WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 224 (256)
+..|+..+--.+.-++.+..+ ...++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+.+. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 344566555555555555554 4568888888887652224566777788889999999999999998875 454
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.97 E-value=1.9 Score=31.24 Aligned_cols=121 Identities=10% Similarity=0.069 Sum_probs=79.6
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcC
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINCFCKMG 85 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 85 (256)
...++.|++++|+.....-.+..|. |...-..++..+|-.|+|++|.+-++...+... .|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 4467899999999999999887775 888889999999999999999999988876531 1223345555543
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL--CKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 149 (256)
+..=.++..-+-.|... .....-...++.+. ...|+.++|..+-....+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~---------g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVL---------GENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECC---------CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCC---------CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22223333433333321 12222333444443 3468899998888877553
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.69 E-value=2.3 Score=31.62 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA---NDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
.++..+..+...|.+.+++.+|...|-.-. .-+...+..++--+... |...++ +...-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHH
Confidence 477788888889999999988888775111 11344454444444333 333322 112122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.++ .|.-.|+...|..+++...
T Consensus 194 aVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHH
Confidence 222 3445677777877777654
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.51 E-value=5.6 Score=35.60 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=90.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC------------------CCchHHHHHHHHHHhccCCHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NV------------------KPNVVTYTSVIRGFCYANDWNE 173 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~------------------~~~~~~~~~li~~~~~~~~~~~ 173 (256)
++.++..--.+..+|...|++++|...|.+.... .. ..-..-|..++..+.+.+.++.
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 4456555566778899999999999999875311 00 0011236778888889999999
Q ss_pred HHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH
Q 047518 174 AKRLFIEMMDQGVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 244 (256)
+.++-+...+....-+ ...|..+..++...|++++|-..+-.+..... -......++...+..|..+.-
T Consensus 918 vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 918 ALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 9988888775422212 23688889999999999999999988876533 456777787777777665544
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.50 E-value=2.9 Score=32.25 Aligned_cols=113 Identities=6% Similarity=-0.036 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhC--CCC-Cch------------------HHHHHHHHHHhccCCHHH
Q 047518 118 PDAITYNTIIDGL---CKQGFVDKAKELFLKMKDK--NVK-PNV------------------VTYTSVIRGFCYANDWNE 173 (256)
Q Consensus 118 ~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~~~-~~~------------------~~~~~li~~~~~~~~~~~ 173 (256)
-|...|..++... ...|+.+.|...+.+.... |.. ++. .+...++..+...|++.+
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3555666665443 2468898998888887653 211 111 112344566778899999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHhHHHH
Q 047518 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-----HGVRPDAFTYNTL 231 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 231 (256)
+...+..+.... +.+...|..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-...
T Consensus 190 a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 190 VIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999999988764 55888999999999999999999999988754 5899998764443
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.24 E-value=2.4 Score=33.24 Aligned_cols=97 Identities=14% Similarity=0.016 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCcHHH--HH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD---QGVQPNVVT--FN 194 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~ 194 (256)
+...+...|.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..+...+.++.. .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4567889999999999999999999864 3333456778888999999999999999998763 232333221 11
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 122234467889999988877654
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.44 E-value=5.3 Score=33.01 Aligned_cols=213 Identities=10% Similarity=0.007 Sum_probs=119.7
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH--HHHHHHHhcC-----------
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF--VVLGRILRSC----------- 101 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~~~~~~----------- 101 (256)
+...--....+....|+...|......+...| ......+..++..+.+.|.+.... .=++.+...|
T Consensus 101 ~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~ 179 (618)
T 1qsa_A 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (618)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333445666777888888888888887776 334566777777777666654422 1122222221
Q ss_pred CCCch----hhHHhhhh----------hcCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH----HHH
Q 047518 102 FTPDV----VTFTSLIK----------VCKPDAIT---YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT----YTS 160 (256)
Q Consensus 102 ~~~~~----~~~~~ll~----------~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 160 (256)
+.++. ..+..+.. ...++... +...+.-+.+ .+.+.|...+......... +... +..
T Consensus 180 l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 257 (618)
T 1qsa_A 180 MPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL-NEDQIQELRDI 257 (618)
T ss_dssp CCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC-CHHHHHHHHHH
Confidence 12222 11111111 11222221 1112222333 3789999999888654322 3222 223
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
+.......+...++...+....... ++.....-.+....+.|+++.|...|+.|.... .........+..++...|+
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~ 334 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGR 334 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCC
Confidence 3333344453456666666655442 344344445555567899999999999886532 2245556777788889999
Q ss_pred hhHHHHHHHHHHh
Q 047518 241 VNHAKELFVSMES 253 (256)
Q Consensus 241 ~~~a~~~~~~m~~ 253 (256)
.++|..+|+++.+
T Consensus 335 ~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 335 EAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 250
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.02 E-value=8.6e-05 Score=58.01 Aligned_cols=67 Identities=6% Similarity=-0.032 Sum_probs=50.9
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
....|..+..+....+...+|++.| ++. -|+..|..++.+..+.|.+++-++++....+..-.|...
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID 119 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE 119 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH
Confidence 3456889999999888888877665 222 266778899999999999999999998877764444433
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.88 E-value=4.9 Score=31.65 Aligned_cols=197 Identities=11% Similarity=0.119 Sum_probs=119.7
Q ss_pred CcCChhhHHHHHHHHHHhCC----CCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHH----
Q 047518 12 TTITPNEALCIFDYMLRMHP----SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFC---- 82 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~---- 82 (256)
..|+++.|++.+-.+.+... .+.+......++..|...|+++...+.+..+... |..+ .....+++.+.
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLK 105 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHh
Confidence 35789999888877665321 1134455778999999999999998888776543 3222 22233333222
Q ss_pred hcCCcchHHHHHHHHHhc--CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCc---h
Q 047518 83 KMGRVSHGFVVLGRILRS--CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPN---V 155 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~ 155 (256)
.....+... ....... ..... .+|.. .........|...|...|++.+|..++..+... |..+. .
T Consensus 106 ~~~~~d~~~--~~~~i~~l~~vte~-kiflE-----~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kv 177 (445)
T 4b4t_P 106 SSKSLDLNT--RISVIETIRVVTEN-KIFVE-----VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKI 177 (445)
T ss_dssp HHCTTHHHH--HHHHHHCCSSSSSC-CCCCC-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred cCCchhHHH--HHHHHHHHHHHhcc-chHHH-----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 222221111 1111110 00000 00000 001223456889999999999999999998642 22111 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMD----QGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+...++.|...+++..|..+++.+.. ....|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5677788899999999999999998752 222333 34567777888889999999888877753
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.85 E-value=2.5 Score=28.12 Aligned_cols=112 Identities=6% Similarity=0.053 Sum_probs=56.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCch-------HHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCc-HHHHHHH
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKN-VKPNV-------VTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPN-VVTFNVI 196 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~l 196 (256)
+..+...+.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++.+... .-+. ..+...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 556667777777777776654321 11221 244555666777777777777777754321 0011 0011000
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
. .....+. ......+...-..+..||.+.|++++|+.+++.+
T Consensus 107 ~---~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 107 G---NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred c---ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0 0000000 0012223445555778888889999998887754
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.72 E-value=5.1 Score=31.56 Aligned_cols=191 Identities=9% Similarity=0.033 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHhhC-----CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhc-CCCCchhhHHhhhhhcCCCHHHH
Q 047518 50 KHYDTVLSLFKRLNST-----GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAITY 123 (256)
Q Consensus 50 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~ 123 (256)
|+++.|++.+-.+.+. ...........++..|...++++...+.+.-+.+. |..+... . ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~----------~~V 97 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--Q----------YMI 97 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--H----------HHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--H----------HHH
Confidence 6778888777655432 23445667888999999999999988877766553 2221111 1 111
Q ss_pred HHHHHHHHhcCCHHHH--HHHHHHHHh--CC-CCC---chHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCc---H
Q 047518 124 NTIIDGLCKQGFVDKA--KELFLKMKD--KN-VKP---NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQPN---V 190 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~ 190 (256)
..++.........+.. ..+.+.+.. .| +.. .......|...+...|++.+|..++..+... +..+. .
T Consensus 98 ~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kv 177 (445)
T 4b4t_P 98 QKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKI 177 (445)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 2223333333333322 222222211 11 111 2233456778899999999999999998742 22221 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 191 VTFNVIMDELCKNGKMDEASSLLDLMIQ----HGVRPDA--FTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
..+...++.|...+++.+|..++.++.. ...+|+. ..+...+..+...+++.+|.+.|.+..
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5677788899999999999999988742 2222222 245666777778899998888776654
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.65 E-value=1.7 Score=26.00 Aligned_cols=88 Identities=10% Similarity=0.013 Sum_probs=61.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
-....++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.. ..||...|.++.. .+.|-.+++..
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 34568899999988888754 3333333445667889999998876544 4788888877643 48888888888
Q ss_pred HHHHHHHCCCCCCHHhH
Q 047518 212 LLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 212 ~~~~~~~~~~~~~~~~~ 228 (256)
-+.++...| .|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 888888776 3443333
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.53 E-value=1.8 Score=25.98 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=61.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
-....++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.. ..||...|.++.. .+.|-.+++..
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 34568899999888888754 3333333445667889999998876554 4788888877644 47888888888
Q ss_pred HHHHHHHCCCCCCHHhH
Q 047518 212 LLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 212 ~~~~~~~~~~~~~~~~~ 228 (256)
-+.++...| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 887887765 3443333
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.46 E-value=1.8 Score=25.92 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (256)
..++|..+-+-+...+. ....-.+=+..+...|++++|..+.+.+ ..||...|.+|.. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554432 2112222234455666666666655443 2456555555533 35555555555555
Q ss_pred HHHhc
Q 047518 250 SMESM 254 (256)
Q Consensus 250 ~m~~~ 254 (256)
++-.+
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 54443
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.36 E-value=3.9 Score=29.63 Aligned_cols=113 Identities=14% Similarity=0.207 Sum_probs=73.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhc
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKN 203 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~ 203 (256)
....+.|.+++|+.....-.+..+. |...-..+++.+|-.|+|+.|.+-++...+. .|+. .+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 3456789999999999888777544 7777788899999999999999999888876 3442 234444433
Q ss_pred CChhHHHHHHHHHHHCCC-----CCCHHhHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 047518 204 GKMDEASSLLDLMIQHGV-----RPDAFTYNTLLDGFC--LTGRVNHAKELFVSMES 253 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 253 (256)
+..=.++..-+- .....-...++.+.. ..|+.++|.++-.+..+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 111222222111 122334455555543 45898888888776643
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.25 E-value=1.9 Score=25.86 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
...++|..+-+-+...+. ....-.+=+..+...|++++|..+.+.+. .||...|.+|.. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345566666555555432 22222222344566777777766665442 566666665543 3556666665555
Q ss_pred HHHHhcC
Q 047518 249 VSMESMG 255 (256)
Q Consensus 249 ~~m~~~g 255 (256)
.++-.+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5554433
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.94 E-value=5.9 Score=31.03 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD--- 148 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 148 (256)
.++..+...|.+.|+++.|.+.|.++......+. .-...+-..+..+...+++..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~------------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG------------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC------------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 3677889999999999999999999987533222 2245677788999999999999999998754
Q ss_pred CCCCCchHH--HHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 149 KNVKPNVVT--YTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 149 ~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
.+..|+... ...-...+...+++..|...|-+....
T Consensus 200 ~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 200 KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 232233221 111112235678899998888777644
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.76 E-value=2.8 Score=27.06 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047518 152 KPNVVTYTSVIRGFCYAND---WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 224 (256)
.|+..+--.+.-++.+..+ ..+++.+++.+.+.+..-.......+.-++.+.|++++|.+..+.+.+. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 4566665556666666554 4578888888887643334556667778899999999999999999985 554
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.75 E-value=3.1 Score=27.62 Aligned_cols=120 Identities=11% Similarity=0.024 Sum_probs=64.4
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhh---hcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIK---VCKPDA-------ITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKP 153 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 153 (256)
|..-.-++-.+.+.+.+.-.+......++. ...++. .++..+.+++...+++..|...|++..+.. .-+
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 333444556666777766666555555433 223332 266778899999999999999999864321 111
Q ss_pred -chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 154 -NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 154 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
+..++..+- ....... ......+...--.+..+|.+.+++++|+.+++.+.
T Consensus 98 k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 98 KTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111111110 0000000 01122344555557788888999999988887654
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.87 E-value=11 Score=32.83 Aligned_cols=55 Identities=11% Similarity=-0.121 Sum_probs=27.8
Q ss_pred CCCcCChhhHHHHHHHHHHhC-CCCCCcccHHHHHHHHHccCChHHHHHHHHHHhh
Q 047518 10 DITTITPNEALCIFDYMLRMH-PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS 64 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 64 (256)
.+..|+.++++.+++.....+ ...+....-..+.-+....|..+++..++.....
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Confidence 345677777777766654321 1101112223344455566666667766665543
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.04 E-value=3.6 Score=26.17 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 118 PDAITYNTIIDGLCKQGFV---DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
++..+-..+.-++.++.+. .+++.++..+...+..-....+--+.-++.+.|+++.|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3334333344444444332 244444444444331112223333444455555555555555555543
No 264
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=87.52 E-value=1.7 Score=28.45 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 53 DTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
+++..+|..|...|+... ...|......+-..|++++|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 458999999999987644 4578888888899999999999999999988888654
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.32 E-value=2.3 Score=29.26 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=47.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 49 NKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
.+....+..+|..|...|+.-. ...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4457789999999988876544 4577888888888999999999999999888777654
No 266
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.86 E-value=14 Score=31.47 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=25.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 047518 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181 (256)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 181 (256)
.+...|+++.|+.+-++....-+ -+-.+|-.|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445555555555555544321 13345555555555555555555544443
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=86.81 E-value=8.3 Score=29.36 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK--MDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
....++.-|...++.++|.+.++++..-... .......+..++-+.++ .+...+++..+.+.|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4577888888999999999999988632211 23344455555554433 45677888888877765444443333333
Q ss_pred HHhcC----ChhHHHHHHHHHH
Q 047518 235 FCLTG----RVNHAKELFVSME 252 (256)
Q Consensus 235 ~~~~g----~~~~a~~~~~~m~ 252 (256)
+.... +...|..++.++.
T Consensus 298 l~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHHH
Confidence 33222 3444555544443
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.51 E-value=8.7 Score=28.91 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHh
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF----LKMKD 148 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~ 148 (256)
+|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++- +...+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------------------------~ll~~~Q~~sg~DL~~llvevy~~ 87 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-----------------------------TLLRSGQGGSGGDLAVLLVDTFRQ 87 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-----------------------------HHHHCCCcchHHHHHHHHHHHHHH
Confidence 445555556667777777766544322 233344444333333 33344
Q ss_pred CCCCCchHHHHHHHHHHhccCCHH-HHHHHHHHHH----HcC--CCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWN-EAKRLFIEMM----DQG--VQPNVVTFNVIMDELCKNGKMDEASSLL 213 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 213 (256)
.+++++......++..+......+ .=..++++++ +.| ..-|......+...|.+.+++.+|+.-|
T Consensus 88 ~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 88 AGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 455556555555555554443211 1122222222 111 1224445555566666666655554443
No 269
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=85.96 E-value=2.3 Score=28.27 Aligned_cols=56 Identities=7% Similarity=-0.002 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhh
Q 047518 53 DTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 108 (256)
+.+..+|..|...|+... ...|......+-..|++.+|.++|+.-++.+-.|....
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 457889999999887654 45788888888899999999999999999988887553
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.25 E-value=8.1 Score=26.60 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=53.9
Q ss_pred CCCHhhHHHHHHHHHh--cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCK--MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (256)
.-|..-....+..--. .+....+..+|..|...|+... ....|......+...|++.+|..+|..
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~-------------~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTK-------------LSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTT-------------BHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHH-------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455444433332222 3446689999999999877644 344688888899999999999999999
Q ss_pred HHhCCCCCch
Q 047518 146 MKDKNVKPNV 155 (256)
Q Consensus 146 ~~~~~~~~~~ 155 (256)
-.+.+-.|-.
T Consensus 141 GI~~~A~P~~ 150 (202)
T 3esl_A 141 GAENNCRPYN 150 (202)
T ss_dssp HHHTTCBSHH
T ss_pred HHHcCCccHH
Confidence 9998777754
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.54 E-value=7.7 Score=25.04 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 118 PDAITYNTIIDGLCKQGFV---DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
++..+-..+.-++.++... .+++.+++.+...+..-.....--+.-++.+.|+++.|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555555555543 355566666555432222333334445666667777777666666664
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.29 E-value=27 Score=30.56 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=39.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHH---HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYT---SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
+...|+.+.+..+.+.+.... .|. .-|. .+..+|+..|+.....+++..+.+.. ..+.+....+.-++...|+.
T Consensus 534 ll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 534 LINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred hhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 345566666666666655431 111 1122 22334556666655555666655431 22333333333333345555
Q ss_pred hHHHHHHHHHHH
Q 047518 207 DEASSLLDLMIQ 218 (256)
Q Consensus 207 ~~a~~~~~~~~~ 218 (256)
+.+.++++.+.+
T Consensus 611 e~v~rlv~~L~~ 622 (963)
T 4ady_A 611 TTVPRIVQLLSK 622 (963)
T ss_dssp SSHHHHTTTGGG
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
No 273
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=80.42 E-value=3.6 Score=28.84 Aligned_cols=56 Identities=18% Similarity=0.051 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 52 YDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
.+.+..+|..|...|+.-. ...|......+-..|++.+|..+|+.-++.+-.|-..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3578899999999987654 4578888888899999999999999999988888654
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.99 E-value=16 Score=27.16 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHH
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL----FLKMK 147 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~ 147 (256)
..|..+..-|.+.+++++|++++..-.. .+.+.|++..|-++ .+...
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~-----------------------------~ll~~~Q~~sa~DLa~llvev~~ 84 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL-----------------------------SFLKAKQGGSGTDLIFYLLEVYD 84 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------------------HHHHCCCcchHHHHHHHHHHHHH
Confidence 3556666677778888888877655433 34555666555554 44555
Q ss_pred hCCCCCchHHHHHHHHHHhccCCHH-HHHHHHHHHH----HcC--CCCcHHHHHHHHHHHHhcCChhHHHHHHH------
Q 047518 148 DKNVKPNVVTYTSVIRGFCYANDWN-EAKRLFIEMM----DQG--VQPNVVTFNVIMDELCKNGKMDEASSLLD------ 214 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------ 214 (256)
+.+.+++......++..+......+ .-.+++++++ +.| ..-+......+...|.+.|++.+|+..|-
T Consensus 85 ~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s 164 (312)
T 2wpv_A 85 LAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDS 164 (312)
T ss_dssp HTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCcc
Confidence 6677778777777777765533211 2233444443 222 12366777888888888888888877552
Q ss_pred -----HH-----HHC--CCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHH
Q 047518 215 -----LM-----IQH--GVRPDAFTY-NTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 215 -----~~-----~~~--~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
.| .+. |.+.....| ...+-.|.-.|+...|..+++...
T Consensus 165 ~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 165 MIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 11 111 211111111 222233456678888888877654
No 275
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=79.34 E-value=3.7 Score=21.83 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHH-Hcc
Q 047518 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCL-AKN 49 (256)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 49 (256)
.++|...|.+|++.... ++..+|...++.. ++.
T Consensus 2 ~eEae~aF~~lL~~~~V-~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQV-DSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTC-CSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCC-CCCCcHHHHHHHhccCC
Confidence 36777888887776666 4556777777776 443
No 276
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=77.86 E-value=8.2 Score=25.50 Aligned_cols=72 Identities=18% Similarity=0.095 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHH-hCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCCcch
Q 047518 16 PNEALCIFDYMLR-MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 16 ~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
.+.+++-+.+..+ .|.. .+.--..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-..+
T Consensus 13 ~~~~~~~~~~~L~~~g~r--~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLK--YTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4556666666554 4443 3445667778888877888899999999876 656677776667777777776543
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.92 E-value=25 Score=27.17 Aligned_cols=25 Identities=8% Similarity=-0.072 Sum_probs=15.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLN 63 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~ 63 (256)
...|...|.+.|+.++..+++....
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456666666666666666665553
No 278
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=75.71 E-value=22 Score=26.39 Aligned_cols=87 Identities=8% Similarity=0.025 Sum_probs=42.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC--hHHHHHHHHHHhhCCCCCCHhh---HHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH--YDTVLSLFKRLNSTGLFPDLYT---HSILINCF 81 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~ 81 (256)
...|...|+.++|...++++.. +.-.......++......++ -+.+-.++..+.. ++-+.... |..++..+
T Consensus 10 i~EYf~~~d~~Ea~~~l~el~~---p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 10 IQEYFEHGDTNEVAEMLRDLNL---GEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCC---GGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhCC---cchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Confidence 3456677888888888887622 10112223344444444443 3445556666653 44333333 33333333
Q ss_pred HhcC-CcchHHHHHHHH
Q 047518 82 CKMG-RVSHGFVVLGRI 97 (256)
Q Consensus 82 ~~~~-~~~~a~~~~~~~ 97 (256)
-... +...|..++..+
T Consensus 86 dDl~lD~P~a~~~la~f 102 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQF 102 (307)
T ss_dssp HHHHHHCTTHHHHHHHH
T ss_pred hHhcccccchHHHHHHH
Confidence 2221 334454444443
No 279
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=74.74 E-value=16 Score=24.19 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC--chHHHHHHHH-H-----HhccCCHHHHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKP--NVVTYTSVIR-G-----FCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 183 (256)
.-+..| ..|++-+|.++++........+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 38 ~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 38 HGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333444 4499999999999998876556 5667888887 2 3467999999999988875
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=73.92 E-value=14 Score=23.32 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=48.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK--MDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
....++.-|...|+.++|.+.++++.... -........+..++-+.++ .+.+..++..+.+.|+-+.......+-..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 45678888989999999999999985221 1123334444555555432 45678888888877765544443433333
Q ss_pred H
Q 047518 235 F 235 (256)
Q Consensus 235 ~ 235 (256)
+
T Consensus 88 ~ 88 (129)
T 2nsz_A 88 Y 88 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 281
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.83 E-value=26 Score=26.38 Aligned_cols=82 Identities=6% Similarity=0.053 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
.-|+.....+...|.+.+++.+|...|- .|-.++...|..++--+...+... .++...-..+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHH
Confidence 4567778888888999999888888773 233334456655554444443322 1222233333
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 047518 197 MDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~ 217 (256)
+ -|.-.++...|..+++.+.
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHH
Confidence 3 3455677777877766554
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=72.65 E-value=17 Score=23.71 Aligned_cols=68 Identities=6% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCCcHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND--WNEAKRLFIEMMDQGVQPNVV 191 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 191 (256)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+...++-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456788899999999999999998642211 33445555566655322 456777788887766544433
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.04 E-value=19 Score=23.53 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=52.7
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
.-|..-....+. |+. ..+.+..+|..|...|+-.. ....|......+...|++++|..+|..-.
T Consensus 65 knD~RyLklWl~-ya~--~~~dp~~if~~L~~~~IG~~-------------~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 65 HNDPRFISYCLK-FAE--YNSDLHQFFEFLYNHGIGTL-------------SSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp TTCHHHHHHHHH-HHT--TBSCHHHHHHHHHTTTTTTT-------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHH--hcCCHHHHHHHHHHCCCcHH-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445554444443 222 23558999999999877644 34467888889999999999999999999
Q ss_pred hCCCCCchH
Q 047518 148 DKNVKPNVV 156 (256)
Q Consensus 148 ~~~~~~~~~ 156 (256)
+.+-.|-..
T Consensus 129 ~~~A~P~~r 137 (152)
T 4a1g_A 129 QNQAEPREF 137 (152)
T ss_dssp HTTCBSHHH
T ss_pred HcCCccHHH
Confidence 887777543
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.69 E-value=21 Score=23.62 Aligned_cols=73 Identities=10% Similarity=0.121 Sum_probs=53.1
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
..|..-....+. |+.. .+.+..+|..|...|+-... ...|......+...|++.+|..+|..-.
T Consensus 60 knD~RyLklWl~-ya~~--~~~p~~if~~L~~~~IG~~~-------------AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 60 YSDPRFLNLWLK-LGRL--CNEPLDMYSYLHNQGIGVSL-------------AQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp TTCHHHHHHHHH-HHHH--CSCHHHHHHHHHHTTSSTTB-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHH-HHHh--cCCHHHHHHHHHHCCcchhh-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 446554444443 2322 25588899999998876543 4467788888999999999999999999
Q ss_pred hCCCCCchH
Q 047518 148 DKNVKPNVV 156 (256)
Q Consensus 148 ~~~~~~~~~ 156 (256)
+.+-.|-..
T Consensus 124 ~~~A~P~~~ 132 (164)
T 2wvi_A 124 QQKAEPLER 132 (164)
T ss_dssp HTTCBSHHH
T ss_pred HcCCCcHHH
Confidence 988777654
No 285
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=67.71 E-value=36 Score=25.46 Aligned_cols=28 Identities=7% Similarity=-0.147 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..-|....+.+++..|..+-+++.+.+.
T Consensus 211 r~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 211 QVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4456677788888888888888887754
No 286
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=67.64 E-value=22 Score=23.00 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=38.0
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
..+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455667665543 2345555555566677778888877766666677776667777777654
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=67.05 E-value=21 Score=22.48 Aligned_cols=66 Identities=6% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCCc
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND--WNEAKRLFIEMMDQGVQPN 189 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 189 (256)
...++.-|...|+.++|...++++...... ...+...+..+.-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456788899999999999999998633221 33445555566655432 4567777878877665443
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.90 E-value=12 Score=24.47 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK--MDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
....++.-|...|+.++|.+.++++.... -........+..++-+.++ .+.+..++..+.+.|+-+.......+-..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 45778888999999999999999985321 1123334445555555333 45678888888877765554443333333
Q ss_pred HHhcC----ChhHHHHHHHHHHh
Q 047518 235 FCLTG----RVNHAKELFVSMES 253 (256)
Q Consensus 235 ~~~~g----~~~~a~~~~~~m~~ 253 (256)
+.... |...|..++.++..
T Consensus 90 l~~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 90 YNEIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHhChHhccCccchHHHHHHHHH
Confidence 33322 34456666665543
No 289
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=66.81 E-value=20 Score=22.56 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=20.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3333334444555555555554444444444444444444443
No 290
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=66.64 E-value=25 Score=23.23 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHH
Q 047518 169 NDWNEAKRLFIEMM 182 (256)
Q Consensus 169 ~~~~~a~~~~~~~~ 182 (256)
|++-+|.++++..=
T Consensus 46 g~yfeaHEvLEe~W 59 (161)
T 2ijq_A 46 GEFHESHDCFEDEW 59 (161)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHH
Confidence 55555555554443
No 291
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=65.89 E-value=24 Score=22.70 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34455555555544444444444444444444443
No 292
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=65.66 E-value=23 Score=22.43 Aligned_cols=62 Identities=11% Similarity=0.238 Sum_probs=38.8
Q ss_pred HHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 145 KMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3556666655543 34455555555 56678888888877766667777766777777766543
No 293
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=65.23 E-value=26 Score=23.03 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=40.9
Q ss_pred HHHHHHHH-HHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCChhH
Q 047518 137 DKAKELFL-KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQPNVVTFNVIMDELCKNGKMDE 208 (256)
Q Consensus 137 ~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~ 208 (256)
+.+.+-+. .+.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-..+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34444333 344556665443 344555555556666777777777665 555566666666666666666553
No 294
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=64.83 E-value=26 Score=22.70 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=41.6
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
..+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34566777655543 34455555555 56678888888887766667777777777777777543
No 295
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=64.06 E-value=3.5 Score=25.64 Aligned_cols=76 Identities=9% Similarity=-0.030 Sum_probs=57.1
Q ss_pred ccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 4 KSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 4 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
.++|--|-+++++++++.+.+ ....|.-.|...+..++.+-|.++++-..+.| +...|...+-.|..
T Consensus 10 ~~~~~~ykkN~rw~qSI~L~K----------kDkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYd 76 (125)
T 3qil_A 10 HSSGLVPRGSHMWKQSVELAK----------KDSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYD 76 (125)
T ss_dssp SSCCCCSSSCCCCSSCCCCCS----------CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTT
T ss_pred ccccchhhccccHHHHHHHHH----------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHh
Confidence 356777888888888866532 23457778888899999999999999998876 56777777777777
Q ss_pred cCCcchHHH
Q 047518 84 MGRVSHGFV 92 (256)
Q Consensus 84 ~~~~~~a~~ 92 (256)
.=+++.+++
T Consensus 77 LlrpDvVLE 85 (125)
T 3qil_A 77 LLRPDVVLE 85 (125)
T ss_dssp CSCTTHHHH
T ss_pred ccChHHHHH
Confidence 666665544
No 296
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=63.52 E-value=17 Score=23.13 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3444555555556667777777766655556666666666666666543
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=63.32 E-value=27 Score=22.42 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=36.3
Q ss_pred HHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
.+.+.|.+++..= ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3555666655432 334444444555666777777777666556666666666666666643
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=62.73 E-value=28 Score=22.49 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
+.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 445667776543 34456667777778889999999998876667788877778888877754
No 299
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=62.38 E-value=37 Score=23.70 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCCCchH--HHH-----HHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 136 VDKAKELFLKMKDKNVKPNVV--TYT-----SVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~--~~~-----~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
++.|+.+|+.+.+.-..++.. ... ..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 677777777776553221111 111 2234466677777777777776654
No 300
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=61.86 E-value=29 Score=22.30 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=35.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
--..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 20 qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 20 QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 4455666666666 6788999999988876667777666777777776543
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.76 E-value=36 Score=23.32 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH--HHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY--NTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+...+..|+.+-+..++ +.|..++.... ...+....+.|+.+-+.-+++...+.
T Consensus 180 ~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 344455677766444444 33444432211 12344445667776666555554443
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=61.75 E-value=29 Score=22.26 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=42.1
Q ss_pred HHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 26 MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
+.+.|.. .+..-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 13 l~~~g~r--~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 13 LKETGVR--ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHTTCC--CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCC--CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 4444543 334455677777777777889999999988776667777777777777777543
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.67 E-value=40 Score=23.87 Aligned_cols=90 Identities=13% Similarity=0.050 Sum_probs=53.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCC----chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDK--NVKP----NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
-++.+....++++|..++++.... +.++ ........+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 378888899999999999877542 2221 1111222233323333333344444445 33 4455666677788
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~ 218 (256)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 8888888888888876654
No 304
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.18 E-value=58 Score=25.22 Aligned_cols=166 Identities=11% Similarity=0.001 Sum_probs=97.5
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCC---CCCcccHHHHHHHHHccC-ChHHHHHHHHHHhhCCCCCCHhhH------H
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPS---PPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTH------S 75 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~------~ 75 (256)
.|.-|.+.|+.++..+++......-.. .........++..+.... ..+.-.++..+..+..- -...+| .
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~ 103 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 345567778888888877765432111 012233556777776543 33444444444332110 011222 2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC
Q 047518 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKP 153 (256)
Q Consensus 76 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~ 153 (256)
.++..|...|++.+|.+++.++.+.--..|..+ .-..++..-+..|...+++.++...+...... .+.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~---------~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKN---------LLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccch---------hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 578899999999999999999887422212111 11335666778899999999999999877542 2222
Q ss_pred chHHHHHHHH-----HHh-ccCCHHHHHHHHHHHH
Q 047518 154 NVVTYTSVIR-----GFC-YANDWNEAKRLFIEMM 182 (256)
Q Consensus 154 ~~~~~~~li~-----~~~-~~~~~~~a~~~~~~~~ 182 (256)
++..- ..+. .+. ..+++..|...|-+..
T Consensus 175 ~p~i~-a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 175 PPKVQ-GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp CHHHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 33221 2222 234 6899999988877765
No 305
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.14 E-value=42 Score=23.67 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=41.6
Q ss_pred HhccCCHHHHHHHHHHHHHc-CCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhc
Q 047518 165 FCYANDWNEAKRLFIEMMDQ-GVQPN---VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT--YNTLLDGFCLT 238 (256)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 238 (256)
.+..|+.+-+. .+.+. |..++ ....+.+ ...+..+......++++.+.+.|..++... -...+...++.
T Consensus 155 A~~~~~~~~v~----~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 155 AAEKGHVEVLK----ILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHTCHHHHH----HHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHHHHH----HHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 34556655443 34433 44433 2223333 334556666666778888888877665432 12334555566
Q ss_pred CChhHHHHHH
Q 047518 239 GRVNHAKELF 248 (256)
Q Consensus 239 g~~~~a~~~~ 248 (256)
|+.+-+..++
T Consensus 230 ~~~~~v~~Ll 239 (285)
T 1wdy_A 230 KHLGLVQRLL 239 (285)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7765544443
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=60.03 E-value=35 Score=22.68 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHCCCCCCH
Q 047518 207 DEASSLLDLMIQHGVRPDA 225 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~ 225 (256)
..-.++.+.+.+.|..++.
T Consensus 155 ~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 155 QLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHHHHTTCCTTC
T ss_pred hhHHHHHHHHHHCCCCCCc
Confidence 3335666666676655543
No 307
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=59.93 E-value=32 Score=22.22 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=44.7
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 179 IEMMDQGVQPNVVTFNVIMDELCKNG-KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
+.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3456677776543 334555666666 7788999999999887677888877778888877754
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=59.68 E-value=21 Score=20.03 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=17.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34445555555554443344445444455554444
No 309
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.20 E-value=31 Score=21.80 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 180 EMMDQGVQPNVVTFNVIMDELCKNG-KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 180 ~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355677766543 344556666666 7888999999999887677888877777888777654
No 310
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=58.83 E-value=21 Score=22.73 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=37.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34567777777777889999999988876677777777777777777543
No 311
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=58.17 E-value=23 Score=22.21 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=35.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 3456666666677788999999888776667777777777777777543
No 312
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=57.26 E-value=41 Score=25.67 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCC
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~ 187 (256)
...++.-|...|+.++|...++++...+.-.....+..+..++-+.. ..+.+-.++..+...++-
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 45678899999999999999999864210001233444444443321 124455566666665543
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.08 E-value=76 Score=25.65 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCch--HHHH-HHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNV--VTYT-SVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~-~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+|.+++.|...+.++.|..+..+..--. ..++. ..|. -+.+.+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4578899999999999999999999874210 01121 1221 1224456678999999999888765
No 314
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=56.68 E-value=18 Score=21.36 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHc-c-CChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 22 IFDYMLRMHPSPPPVSSFNIMLGCLAK-N-KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
+++.+.+.+.- +..-...+- .. . ...++|.+++..+...|. ..|..++.++...|+..-|
T Consensus 26 vld~L~~~~vl--t~~~~e~I~---~~~~~t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 26 LWDVLLSRELF--RPHMIEDIQ---RAGSGSRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp THHHHHHTTSS--CHHHHHHHH---TSTTCCHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCCC--CHHHHHHHH---hccCCChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 56666665543 322222222 22 2 467888888888887752 4677777777665654443
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.42 E-value=1.1e+02 Score=26.97 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=36.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 98 (256)
.++..+...|.++-|.++...+. .+...-..+..+|...|++++|...|+++.
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 35666677777776655443322 233333567888999999999999998865
No 316
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=55.08 E-value=44 Score=22.30 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=57.8
Q ss_pred HHccCChHHHHHHHHHHhhCCCC-CC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHH
Q 047518 46 LAKNKHYDTVLSLFKRLNSTGLF-PD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123 (256)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 123 (256)
.++.|+.+....++.. +.. .+ ..-++ .+...+..|..+.-.++.+.+++.|..++... ..-+
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T-~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d-----------~~g~ 76 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSN-ILYDVLRNNNDEARYKISMFLINKGADIKSRT-----------KEGT 76 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTT-HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC-----------TTCC
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCC-HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC-----------CCCC
Confidence 3566777776655543 211 11 11222 33344455555545567777777777666432 1111
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHhccCCH-HHHHHHHHHHHH-cCCCCc
Q 047518 124 NTIIDGL-CKQGFVDKAKELFLKMKDKNVKPNVV---TYTSVIRGFCYANDW-NEAKRLFIEMMD-QGVQPN 189 (256)
Q Consensus 124 ~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~-~~a~~~~~~~~~-~~~~~~ 189 (256)
+.|..++ ....+......+.+.+.+.|..++.. -.+..+...+..+.. ..-..+++.+.+ .|..++
T Consensus 77 TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 77 TLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp CTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred cHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 1122111 12233444456666666666554432 110122222222222 334455666666 555544
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=54.00 E-value=51 Score=22.69 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=37.0
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCCC
Q 047518 126 IIDGLC---KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-----WNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 126 l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~ 187 (256)
+++++. +..+++.|+-.+-+|.+.| .|.-..-..++.+....|. ...|...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 455554 4578888888888888888 6555555555555544443 33444555555555543
No 318
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=53.35 E-value=33 Score=20.39 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHhHHH
Q 047518 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI-----QHGVRPDAFTYNT 230 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~ 230 (256)
+..+.+++...|+.|+..+...++..|...+- + +.++.++.. ..|..|+....+.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 45555666666666666666666666655553 1 333322222 3455666555444
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=53.35 E-value=49 Score=24.89 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=59.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHccC--ChHHHHHHHHHHhhCCCCCCHhh---HHHHHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPV--SSFNIMLGCLAKNK--HYDTVLSLFKRLNSTGLFPDLYT---HSILINC 80 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~ 80 (256)
..|...|+.++|...++++.. |.. .....++......+ ..+.+..++..+.+.|+-+.... |..++..
T Consensus 19 ~Ey~~~~d~~Ea~~ci~el~~-----p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 19 EEYLHLNDMKEAVQCVQELAS-----PSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHCCHHHHHHHHHTTCC-----GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHcCC-----cccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 345666777777777777621 111 01112222222222 23455666777766665433332 2333333
Q ss_pred HHhc-CCcchHHHHHHHHHhc----CCCCchhhHHhhhhh---cCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 81 FCKM-GRVSHGFVVLGRILRS----CFTPDVVTFTSLIKV---CKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 81 ~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
+-.. =+...|...+.++... |..|-...+..+... ..........++..+.+....+.+.++|.
T Consensus 94 l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~ 165 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWR 165 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 2222 2556676666666554 332221222222111 11122233444555555555666666655
No 320
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.07 E-value=58 Score=23.05 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
+.......+..+.+.|+.++|.++|=+...
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 344444555556666666666666655443
No 321
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=52.31 E-value=14 Score=19.65 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=13.1
Q ss_pred ChhhHHHHHHHHHHhCCCCCC
Q 047518 15 TPNEALCIFDYMLRMHPSPPP 35 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~ 35 (256)
+++.|...|.++...+..||+
T Consensus 35 d~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGG
T ss_pred CHHHHHHHHHHHHHcCCCCHH
Confidence 566777777777665544343
No 322
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=52.31 E-value=54 Score=26.78 Aligned_cols=54 Identities=6% Similarity=-0.004 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 244 (256)
+..-...++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|+++|++++.
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 4556778899999999999999999988765322 34455 556788999988765
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.04 E-value=59 Score=22.83 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047518 172 NEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225 (256)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 225 (256)
+....+|..|...|+... ...|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 467778888887766544 456677777788888888888888887776656543
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=51.64 E-value=56 Score=22.49 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=33.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHCCCC
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK-----MDEASSLLDLMIQHGVR 222 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 222 (256)
.+-.+.+.|+-++.+|++.| .|.-..-..++.+....|. ...|...++.....|.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35567777777777777777 6655555555556555554 22344445555555544
No 325
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=51.53 E-value=30 Score=19.34 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=44.1
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
..+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-..
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 34667777766644 44556665554 56678889998888766677888888888888877543
No 326
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.35 E-value=96 Score=25.10 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=47.4
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCC-CCCHh---hHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPDLY---THSILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
+..+|.+++.|...+.++.|..+..+..-... .++.. -+..+...+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35689999999999999999999998852110 11211 2234556677789999999999888765
No 327
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=51.34 E-value=56 Score=22.42 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=36.0
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcC
Q 047518 126 IIDGLC---KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-----WNEAKRLFIEMMDQG 185 (256)
Q Consensus 126 l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~ 185 (256)
+|+++. +..+++.|+-.+-+|.+.|-.|.-..-..++.+....|. ...|...++.....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 455554 457888888888888888876666655555555544332 333444444444444
No 328
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=50.65 E-value=17 Score=19.73 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=35.8
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
.++.++..+++..-.++++..+.++.+.| ..+..+|---.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 46778888888888899999999998888 45777777777666653
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=50.22 E-value=30 Score=26.08 Aligned_cols=95 Identities=8% Similarity=0.049 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCCCCcHHH---HHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQPNVVT---FNVIMD 198 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~ 198 (256)
...++.-|...|+.++|...++++...... ...+...+..+.-+. ...+.+..++..+.+.++-+.... |..++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 456788899999999999999988643221 223333333443332 124556667777776655433332 233333
Q ss_pred HHHhcC-ChhHHHHHHHHHHH
Q 047518 199 ELCKNG-KMDEASSLLDLMIQ 218 (256)
Q Consensus 199 ~~~~~g-~~~~a~~~~~~~~~ 218 (256)
.+-... |...|...+..+..
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHG
T ss_pred hChHhhcCccchHHHHHHHHH
Confidence 332222 55566666666553
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.19 E-value=26 Score=24.63 Aligned_cols=56 Identities=14% Similarity=-0.035 Sum_probs=32.8
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHh-------hHHHHHHHHH--hcCCcchHHHHHHHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-------THSILINCFC--KMGRVSHGFVVLGRIL 98 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 98 (256)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344567788888888888777666554422 2233443332 4577666665555543
No 331
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.30 E-value=30 Score=18.33 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=17.7
Q ss_pred HccCChHHHHHHHHHHhhCCCCCC
Q 047518 47 AKNKHYDTVLSLFKRLNSTGLFPD 70 (256)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~~~~~ 70 (256)
...|+.+.|+..+-.|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 346778888888888877666664
No 332
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=47.59 E-value=66 Score=22.10 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=17.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 204 (256)
+-.+.+.|+-++.+|++.|-.|.-..-..++.+....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 33455555555555555554444333333333333333
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.27 E-value=70 Score=22.36 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=19.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+..|.+.|.+++|.+++++....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC
Confidence 345678889999999999888765
No 334
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=46.47 E-value=71 Score=22.18 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=50.2
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 047518 126 IIDGLC---KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-----WNEAKRLFIEMMDQGVQPNVVTFNVIM 197 (256)
Q Consensus 126 l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll 197 (256)
+++++. +..+++.|+-.+-+|.+.|-.|.-..-..++.+...-|. ...|...++.....|.+--.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455554 468899999999999999887776666666666644443 455666677777777543333333333
Q ss_pred HHHHhcCC
Q 047518 198 DELCKNGK 205 (256)
Q Consensus 198 ~~~~~~g~ 205 (256)
..++.+-+
T Consensus 118 iyLA~APK 125 (213)
T 3ctd_A 118 LYLAISPK 125 (213)
T ss_dssp HHHHHSCC
T ss_pred HHHHcCCc
Confidence 33343333
No 335
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=45.45 E-value=74 Score=22.09 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=43.2
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHCCCCCCHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK-----MDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~ 226 (256)
.+-.+.+.|+-++.+|++.|-.|.-..-..++.+....|. ...|...++....-|.+--..
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 111 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLF 111 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4668999999999999999987776666677777776664 334555666666667543333
No 336
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=45.21 E-value=54 Score=26.78 Aligned_cols=27 Identities=0% Similarity=-0.123 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
-..-++..|.+.|-.+.|.++++.+-.
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~ 544 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGN 544 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 344445555555555555555544433
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=45.19 E-value=1.2e+02 Score=24.29 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHH
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
..|..-.+.+...|++++|.++-.
T Consensus 362 ~L~~~~F~~l~~~g~y~~AA~~aA 385 (494)
T 1bpo_A 362 ELFARKFNALFAQGNYSEAAKVAA 385 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555556666666666655543
No 338
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.75 E-value=79 Score=22.21 Aligned_cols=74 Identities=11% Similarity=0.004 Sum_probs=38.2
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhcCC
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVT--FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF---TYNTLLDGFCLTGR 240 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 240 (256)
...+.......+++.+.+.|..++... -.+.+...+..|+.+-+..+++. .|..++.. -.+. +....+.|+
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~~~ 265 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELKL 265 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHcCc
Confidence 345565556777888888887665421 12334455667776544444331 45444422 2233 333445566
Q ss_pred hhH
Q 047518 241 VNH 243 (256)
Q Consensus 241 ~~~ 243 (256)
.+-
T Consensus 266 ~~i 268 (285)
T 1wdy_A 266 KKI 268 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 339
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=44.21 E-value=37 Score=23.12 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+.....++.+.+... +-+-.-.-.+|.++.+.|++++|.+++.++..
T Consensus 13 ~~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 13 SDTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp CCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666654 23444556678888999999999999988765
No 340
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.12 E-value=1e+02 Score=23.05 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..-|....+.+++..|..+-+++.+.+.
T Consensus 202 r~AM~~a~K~KNy~tAa~fArrLLel~p 229 (320)
T 3mkr_B 202 RTALNLFFKLKNFRTAAAFARRLLELGP 229 (320)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3446677788888888888888887653
No 341
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=41.67 E-value=70 Score=20.76 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhC----CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 135 FVDKAKELFLKMKDK----NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
+++.+....+.++.. |.. .......-+..+++.|+.+.+...+..+..
T Consensus 70 D~~~l~~~aH~LKGss~~lGa~-~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 70 DFKKVDAHVHQFKGSSASIGAQ-RVKNSCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666542 221 222334445555666777766666666654
No 342
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=41.24 E-value=24 Score=22.02 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=30.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
.|.-.|...+..++.+-|+++++-.++.| +...|.+.+..|-..=+++-+.+
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 34455555566666666666666666654 45566666666665555554443
No 343
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=39.87 E-value=59 Score=19.36 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH-----HcCCCCcHHHHHHH
Q 047518 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-----DQGVQPNVVTFNVI 196 (256)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 196 (256)
.|..+.++...-|+.|+..+...++..|...+. + +.++.++.. ..|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 456677777778898888888888888766554 2 444433332 34666766655543
No 344
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.12 E-value=1.4e+02 Score=23.49 Aligned_cols=116 Identities=10% Similarity=-0.000 Sum_probs=64.1
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC-------CCchhhHHhhhhhcC----CCHHHHHHHHHHHH---hcC
Q 047518 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF-------TPDVVTFTSLIKVCK----PDAITYNTIIDGLC---KQG 134 (256)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~~~----~~~~~~~~l~~~~~---~~~ 134 (256)
.+......+... ..|+...+..+++.+..... ..+.......+.... .+...+.-+++++. +.+
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgs 269 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGS 269 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCC
Confidence 344555555544 45677777777776654322 122222222222111 11222233444443 468
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCC
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-----WNEAKRLFIEMMDQGV 186 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~ 186 (256)
+.+.|+.++.+|.+.|..|....-..++.+...-|. ...|...++.....|.
T Consensus 270 d~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 270 APDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 899999999999999887776666666666554443 4445556666666664
No 345
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=38.31 E-value=61 Score=19.05 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=40.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-----hcCCcchHHHHHHHHHh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC-----KMGRVSHGFVVLGRILR 99 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~ 99 (256)
|..-+..+ ..|++-+|.++++........|....|..+|+... +.|+. |..++.+...
T Consensus 5 ~~~~~~lf-n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLW-RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHH-hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 44444444 44999999999999987763345567777776533 46776 7777777765
No 346
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=37.72 E-value=52 Score=18.16 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=21.4
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH 51 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 51 (256)
..++|...|..|++.... ....+|...+.....-.+
T Consensus 13 t~eea~~~F~~LL~e~~V-~~~~tWe~~~~~i~~DpR 48 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRV-PSNASWEQAMKMIINDPR 48 (71)
T ss_dssp SHHHHHHHHHHHHHHTTC-CTTCCHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHcCc-CCCCCHHHHHHHHccCcc
Confidence 456677777777665544 344467666665554433
No 347
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.21 E-value=1e+02 Score=23.53 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC--hhHHHHHHHHHHhcCC
Q 047518 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR--VNHAKELFVSMESMGC 256 (256)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~ 256 (256)
.....++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+...+++..+.+.|+
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 3467888999999999999999999863211 123445566666665443 4567788888877664
No 348
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.65 E-value=95 Score=20.83 Aligned_cols=172 Identities=11% Similarity=0.051 Sum_probs=93.5
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
++...-...+..+.+.+..+.. ..+..+.. .++..+-...+.++...+.. .+...+..+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~-------------- 91 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK-------------- 91 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT--------------
T ss_pred CCHHHHHHHHHHHHHhCCccHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc--------------
Confidence 4555556666666666664333 33333333 24556666666666666653 33333333333
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
.++..+-...+.++.+.+..+. ...+..+.. .++..+-...+.++...+..+ +...+..+.+ .++...-
T Consensus 92 ---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr 160 (211)
T 3ltm_A 92 ---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVR 160 (211)
T ss_dssp ---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHH
Confidence 2344445555666667676543 333333433 246666666677777777643 4444444443 3566666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
...+.++.+.+. .++...+..+.+. ++..+-...+.++.+.+
T Consensus 161 ~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 161 QSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 777777777776 4455566655542 35555555566555544
No 349
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=36.27 E-value=34 Score=15.50 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=12.4
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 047518 232 LDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+.-|...|..++|..+-++|+
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 445556666666666655554
No 350
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.16 E-value=64 Score=23.94 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNS 64 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 64 (256)
...++.-|...|+.++|...++++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45688889999999999999988753
No 351
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.02 E-value=1.2e+02 Score=20.62 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=14.0
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCC
Q 047518 44 GCLAKNKHYDTVLSLFKRLNSTGLF 68 (256)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~~~~~~~~ 68 (256)
...++.|+.+.+..+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3445566666666666655554433
No 352
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.89 E-value=81 Score=18.56 Aligned_cols=24 Identities=29% Similarity=0.183 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDL 215 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~ 215 (256)
.+.--...+.+.|++++|++....
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHH
Confidence 344455566666666666665544
No 353
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.70 E-value=58 Score=16.84 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=6.0
Q ss_pred hhHHHHHHHHH
Q 047518 241 VNHAKELFVSM 251 (256)
Q Consensus 241 ~~~a~~~~~~m 251 (256)
.+.|++++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555554
No 354
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=31.46 E-value=44 Score=22.39 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
...++.++..++...-.++++..+.+....|. .+..+|---++.+++.
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34578888888888888899999998888874 5777777777776663
No 355
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=31.36 E-value=78 Score=22.87 Aligned_cols=52 Identities=10% Similarity=0.183 Sum_probs=30.4
Q ss_pred HccCChHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047518 47 AKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98 (256)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 98 (256)
....++.....++..|.... -.|+......++++|.+.-+-..|.+.++...
T Consensus 184 ~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 184 QTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 33344555555555554422 24666667777777777777666766666544
No 356
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=30.46 E-value=21 Score=18.08 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHhhCCCCCCH
Q 047518 50 KHYDTVLSLFKRLNSTGLFPDL 71 (256)
Q Consensus 50 ~~~~~a~~~~~~~~~~~~~~~~ 71 (256)
++..+|+++++.+.+.|-.|+.
T Consensus 7 RDv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcH
Confidence 4667888888888888755543
No 357
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.25 E-value=99 Score=24.51 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=61.3
Q ss_pred CcCChhhHHHHHHHHHHhCCC--CCCc------------ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH------
Q 047518 12 TTITPNEALCIFDYMLRMHPS--PPPV------------SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL------ 71 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~--~~~~------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 71 (256)
+...++++-+++.++-..-.. .++. ...|.+...|.+.++.+.+..++..+...+..|+.
T Consensus 138 ~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~ 217 (455)
T 3t5v_B 138 SHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLD 217 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCcc
Confidence 455677777777777654222 1121 12577889999999999999999999877653332
Q ss_pred --hhH-HHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 72 --YTH-SILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 72 --~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
.+| ..+...+...+++.+|.+.+..+.+.
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 233 33556667889999999988887764
No 358
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=30.15 E-value=88 Score=18.47 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=26.1
Q ss_pred ChhhHHHHHHHHHHh--CCCCCCcccHHHHHHHHHccCChHHHHHHHHHH
Q 047518 15 TPNEALCIFDYMLRM--HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 62 (256)
.+++...+++..... +|.+.|+..+...+..+.+.++.+.+..++..+
T Consensus 10 ~l~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l 59 (97)
T 4fjo_A 10 EFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYM 59 (97)
T ss_dssp SHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 444555555554433 333334445555555566667777776665544
No 359
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.11 E-value=2e+02 Score=22.61 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHCC
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK-----MDEASSLLDLMIQHG 220 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~ 220 (256)
+.++.+.|+.++.+|.+.|..|....-..+..+....|. ...|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 346777788888888877766655555555555555553 223444444444444
No 360
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.51 E-value=91 Score=20.88 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=12.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
++.++..++...-.+.++..+.+....|
T Consensus 114 ~~Qll~l~Aed~AieDaIy~L~~al~~g 141 (174)
T 2p22_A 114 LNQLYNLVAQDYALTDTIECLSRMLHRG 141 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444444444444444443
No 361
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.50 E-value=1.3e+02 Score=20.35 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 047518 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213 (256)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 213 (256)
.+......+.+.++.... +-.-.-.+|.++.+.|++++|.+++.++... +..... ..+.+++.-|.-++
T Consensus 13 ~~l~~~~~~~~~LR~qrH--df~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl 81 (192)
T 1ixm_A 13 SDTALTNELIHLLGHSRH--DWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFL 81 (192)
T ss_dssp CCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHH
Confidence 355666667776665422 3333456788999999999999999998764 111222 56677777777766
Q ss_pred HHHH
Q 047518 214 DLMI 217 (256)
Q Consensus 214 ~~~~ 217 (256)
.+..
T Consensus 82 ~K~~ 85 (192)
T 1ixm_A 82 TFNW 85 (192)
T ss_dssp HGGG
T ss_pred HHHH
Confidence 6554
No 362
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.45 E-value=1.6e+02 Score=21.10 Aligned_cols=83 Identities=11% Similarity=0.120 Sum_probs=38.1
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
++..+..+..+++.. .++...|..-++. +...+..|+.+-+..+++. |..++...-...+...+..|+.+
T Consensus 7 i~~~~~~~v~~lL~~---~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~-- 76 (285)
T 3kea_A 7 INTWKSKQLKSFLSS---KDTFKADVHGHSA-SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTK-- 76 (285)
T ss_dssp GGGCCHHHHHHHHHS---TTTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCH--
T ss_pred HHhcCHHHHHHHHHh---CCCCccCCCCCCH-HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHH--
Confidence 344555555555533 2333334433333 3444567777665555543 43332221122333444556654
Q ss_pred HHHHHHHHhcCCCCc
Q 047518 91 FVVLGRILRSCFTPD 105 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~ 105 (256)
+++.+.+.|..++
T Consensus 77 --~v~~Ll~~ga~~~ 89 (285)
T 3kea_A 77 --IVKILLFSGLDDS 89 (285)
T ss_dssp --HHHHHHHTTCCTT
T ss_pred --HHHHHHHCCCCCC
Confidence 3344455565544
No 363
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=29.35 E-value=1.3e+02 Score=22.54 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
+..+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|
T Consensus 216 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 216 FAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 3444566788888888888888877777888888888888765
No 364
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=28.94 E-value=96 Score=19.39 Aligned_cols=24 Identities=4% Similarity=-0.155 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHH
Q 047518 73 THSILINCFCKMGRVSHGFVVLGR 96 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~ 96 (256)
.+...+.-+...++++++..+++.
T Consensus 62 ~l~~yL~~lVeek~Lek~~~vlk~ 85 (124)
T 3vu7_H 62 QVVKYCTDLIEEKDLEKLDLVIKY 85 (124)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHHHHHH
Confidence 333334444455666655554333
No 365
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=28.56 E-value=62 Score=18.31 Aligned_cols=29 Identities=10% Similarity=-0.050 Sum_probs=13.8
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 047518 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (256)
++|++.||.-+..++.+.--..+++.+.+
T Consensus 32 LPpgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 32 IPPNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp CCTTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 45555555555554444433344444433
No 366
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.49 E-value=87 Score=17.87 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=26.5
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY 52 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 52 (256)
..-..++|...|..|+..... +...+|...+...+.-.++
T Consensus 12 ~~~t~eea~~~Fk~LL~e~~V-~p~~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 12 AIVPLEARMKQFKDMLLERGV-SAFSTWEKELHKIVFDPRY 51 (82)
T ss_dssp SSCCHHHHHHHHHHHHHHTTC-CSSSCHHHHHHHHHTCSGG
T ss_pred ccCCHHHHHHHHHHHHHHcCc-CCCCCHHHHHHHHccCCcc
Confidence 334567888888888876655 3445788777666554444
No 367
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=27.66 E-value=1.8e+02 Score=21.81 Aligned_cols=74 Identities=8% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH-------HhcCChhHHHHHH
Q 047518 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF-------CLTGRVNHAKELF 248 (256)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~a~~~~ 248 (256)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|.......+...+... ....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q ss_pred H
Q 047518 249 V 249 (256)
Q Consensus 249 ~ 249 (256)
+
T Consensus 310 ~ 310 (345)
T 2qfz_A 310 Q 310 (345)
T ss_dssp T
T ss_pred H
No 368
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.52 E-value=2.3e+02 Score=22.46 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--------HhHH-HHHHHHHhcCChhHHHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA--------FTYN-TLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~-~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
..+.+...|.+.++.+.+..+++.+...+..|+. .+|. -+...+...+++.+|.+.+....
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3466667777777777777777777665442221 2332 23344556677777777665543
No 369
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.89 E-value=1.7e+02 Score=20.83 Aligned_cols=116 Identities=10% Similarity=-0.020 Sum_probs=50.8
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
.+...+..|+.+-+..++ +.|..++ ..-++.+. ..+..|+.+ +++.+.+.|..++..
T Consensus 65 ~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~L~-~A~~~g~~~----~v~~Ll~~ga~~~~~----------- 124 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTALY-YAVDSGNMQ----TVKLFVKKNWRLMFY----------- 124 (285)
T ss_dssp HHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHHCGGGGGC-----------
T ss_pred HHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcHHH-HHHHcCCHH----HHHHHHhcCCCCCcc-----------
Confidence 445556777766554444 4454433 22223333 334556544 344444445443321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ch-HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-NV-VTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
+..-+...+...+..|+.+-+ +.+.+.|..+ +. ...+.+ ...+..|+.+-+..+++.-.
T Consensus 125 ~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 125 GKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCI-HITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp SSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHH-HHHHHcChHHHHHHHHHcCC
Confidence 111111122333455665433 3334444332 11 223333 33356677776666655533
No 370
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=25.52 E-value=51 Score=24.70 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
+++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 44556677888888888888888888888899999999988765
No 371
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.12 E-value=3.5e+02 Score=25.16 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHH
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 94 (256)
..++-.+.|.++.+--.. .|.......+......+++.+|++++.++.+. +|+...|..++..+...| |+....+.
T Consensus 1264 ~~~~~~~~~~el~k~~d~-~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~ 1339 (1354)
T 3lxu_X 1264 SLAEINELYTEIIKFVDA-NDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVI 1339 (1354)
T ss_dssp GHHHHHHHHHHHTTSSCT-TSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc-CCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHH
Q ss_pred HHHHhcCCCCc
Q 047518 95 GRILRSCFTPD 105 (256)
Q Consensus 95 ~~~~~~~~~~~ 105 (256)
+++....++++
T Consensus 1340 ~~~~~~~~p~~ 1350 (1354)
T 3lxu_X 1340 NRMMITAFPSS 1350 (1354)
T ss_dssp HHHHHHHSCSS
T ss_pred HhhhhhhCccc
No 372
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.20 E-value=2.8e+02 Score=22.25 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (256)
.|..-.+.+...|++++|.++--.-... +--+..|.+.+-..-...|+..-.+.+|.-+.+.| +.+..--..+++.-.
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL 440 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVL 440 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHH
Confidence 3444445555566666665555444332 22255555555554455555556666666666554 344444444455555
Q ss_pred hcCChhHHHHHHH
Q 047518 202 KNGKMDEASSLLD 214 (256)
Q Consensus 202 ~~g~~~~a~~~~~ 214 (256)
..|+.+-.++.+.
T Consensus 441 ~q~r~~llekWl~ 453 (494)
T 1bpo_A 441 QQGRKQLLEKWLK 453 (494)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHh
Confidence 5555555444443
No 373
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=23.92 E-value=2.8e+02 Score=22.25 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=46.2
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
.++.|...|.+.....|. +-..||.|.-.....|+.-+|.-.|-+..... .|-..+...+...+.+
T Consensus 167 ~~~~A~~~Y~~A~~~~P~--~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPS--NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHHCTT--BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC--CCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 456788888888887765 66778888888887787777776666655443 4566667777666654
No 374
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=23.56 E-value=1.3e+02 Score=18.28 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=13.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 231 LLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 231 l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
|+.+..-..-..+-+.+++++..+|
T Consensus 85 LMta~~~~~la~e~I~lyk~~~~~~ 109 (109)
T 3k1s_A 85 LMNAITVKELAAEFIDLYKKLEAKG 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4444443344556666777666554
No 375
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=23.50 E-value=85 Score=16.07 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=16.6
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
..+..|...|+.-..--.+.++. .+.|++..|++++
T Consensus 12 ~al~qMl~MGF~negGWLt~LL~--~k~gDI~~aLD~l 47 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLLQ--TKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHHH--HTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCccccHHHHHHH--HccCCHHHHHHHh
Confidence 34445555554432222233333 3556666665554
No 376
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.89 E-value=3.9e+02 Score=23.47 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=49.2
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHhC----CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 047518 125 TIIDGLCKQGF---VDKAKELFLKMKDK----NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197 (256)
Q Consensus 125 ~l~~~~~~~~~---~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 197 (256)
.++...|+.|. .+.|.+.|+..... .++|+.. ..+...-.+.|..++-..+++...... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 45566667665 45777788776543 2445543 222233334566665556666665532 233334566
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 047518 198 DELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+++-..+.....++++....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHhC
Confidence 666666666666666665543
No 377
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.54 E-value=1.4e+02 Score=18.38 Aligned_cols=64 Identities=8% Similarity=0.022 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhccCC---HHHHHH----HHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 156 VTYTSVIRGFCYAND---WNEAKR----LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 156 ~~~~~li~~~~~~~~---~~~a~~----~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.++..++..|...-. .+++.+ +|+.+.+..+.|+...-..-+..+...++++.|..+...+...
T Consensus 20 ~~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 20 RPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 345556665543321 233333 3344444455555444444445556788899998888887764
No 378
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.37 E-value=4.1e+02 Score=23.50 Aligned_cols=108 Identities=11% Similarity=0.017 Sum_probs=70.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC------------------
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ------------------ 187 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 187 (256)
++..+...|.++-|..+...+.. +...--.+..+|...|++++|...|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-----t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-----SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 66677778888766554432221 322223466778888999999999876531 111
Q ss_pred -----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcC
Q 047518 188 -----PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA----FTYNTLLDGFCLTG 239 (256)
Q Consensus 188 -----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 239 (256)
....-|..++..+.+.+-++.+.++-+...+.--.-|. ..|..+..+.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11236788999999999999999999888864222233 25777777766554
No 379
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.05 E-value=98 Score=16.26 Aligned_cols=17 Identities=12% Similarity=0.260 Sum_probs=10.3
Q ss_pred ChhHHHHHHHHHHhcCC
Q 047518 240 RVNHAKELFVSMESMGC 256 (256)
Q Consensus 240 ~~~~a~~~~~~m~~~g~ 256 (256)
..++...+++++.++|+
T Consensus 38 ~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 38 EKQEVVKLLEALKNKGL 54 (59)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 34556666666666664
No 380
>1n3k_A Astrocytic phosphoprotein PEA-15; death effector domain, six helix bundle, apoptosis; NMR {Cricetulus griseus} SCOP: a.77.1.4
Probab=21.83 E-value=49 Score=20.92 Aligned_cols=36 Identities=22% Similarity=0.051 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 54 TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 54 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
.+.++|..|.+.|.. +..-...|-..+.+-|+.+-.
T Consensus 41 s~ldlF~~Lek~~~L-~~~nl~~L~eLL~~I~R~DLl 76 (130)
T 1n3k_A 41 TGSAWFSFLESHNKL-DKDNLSYIEHIFEISRRPDLL 76 (130)
T ss_dssp SHHHHHHHHHHTTTC-CSSCCHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHcCCC-CCccHHHHHHHHHHcChHHHH
Confidence 566666666655522 211123344444444554444
No 381
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.83 E-value=85 Score=17.73 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+.+-|+..|+++.|..+|+...+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3455667777777777777776543
No 382
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.57 E-value=1.7e+02 Score=18.95 Aligned_cols=102 Identities=8% Similarity=-0.047 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (256)
..+.+..++..+.+.|.-.|..--...+....+.| .....+-.++...|+.++ +....+..+. ....+.|..++.
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~--~i~~al~~~~-~d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE--ATEKAMREAD-IDWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH--HHHHHHHHHC-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH--HHHHHHHHcC-HhHHHHHHHHHH
Confidence 34567778888888887755555556666655544 245567778888887543 3333333321 122344555554
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 215 LMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
.-.....+++.....-++..+.+.|-.
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrGF~ 146 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRGYL 146 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 333222233445566677777666643
No 383
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.27 E-value=2.8e+02 Score=21.28 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=36.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----------------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKN----------------VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
++.......+.+++...+..+...- ..+.......+...|...|+.++|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4556667778888888887764321 11223344555566777788888888877765
No 384
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=21.12 E-value=75 Score=19.19 Aligned_cols=46 Identities=28% Similarity=0.210 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
+..+.+.+++....... ....|...|+.++.+.+.-+-|..+....
T Consensus 55 ~~~eq~~~mL~~W~~r~--G~~AT~~~L~~AL~~~~~~dvae~l~~~~ 100 (110)
T 1wxp_A 55 DMKMRAKQLLVAWQDQE--GVHATPENLINALNKSGLSDLAESLTNDN 100 (110)
T ss_dssp SHHHHHHHHHHHHHHHH--GGGCCHHHHHHHHHHTTCHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence 34456666666665431 13457778888888888877776665443
No 385
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.76 E-value=1.9e+02 Score=19.03 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
...++.-|...++.++|...++++...
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p 39 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLG 39 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 356788899999999999999998743
No 386
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.58 E-value=4.4e+02 Score=23.17 Aligned_cols=158 Identities=10% Similarity=0.038 Sum_probs=83.4
Q ss_pred HHHHHHHccCCh---HHHHHHHHHHhhCC----CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 41 IMLGCLAKNKHY---DTVLSLFKRLNSTG----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 41 ~l~~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.++...|..|.. +.|.+.|+.....+ ++||.. ..+...-.+.|..++-..++++..+.
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~------------- 755 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA------------- 755 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc-------------
Confidence 456667777764 56777887765532 445533 22333334456554444555555543
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHhcc-CCHHHHHHHHHHHHH---cCCCC
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYA-NDWNEAKRLFIEMMD---QGVQP 188 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~---~~~~~ 188 (256)
.+..--..++.+++-..+.+...++++...... ++ ...... ++.+.... ...+.+.+++.+=-+ .....
T Consensus 756 ----~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir-~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~ 829 (909)
T 4fke_A 756 ----QLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIR-KQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGG 829 (909)
T ss_dssp ----CSHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSC-GGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSS
T ss_pred ----CCHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCc-hhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 233334567778888888888888888776543 33 233333 33333322 222334444333111 11223
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
....+..++......-.-++-.+-++.+.+.
T Consensus 830 ~~~~~~~~i~~~~~~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 830 GSFSFSNLIQGVTRRFSSEFELQQLEQFKKN 860 (909)
T ss_dssp CCCCHHHHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 3445777787777666555555556665543
No 387
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=20.21 E-value=26 Score=19.56 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=6.2
Q ss_pred HHHHccCChHHHHH
Q 047518 44 GCLAKNKHYDTVLS 57 (256)
Q Consensus 44 ~~~~~~~~~~~a~~ 57 (256)
..+...|+++++..
T Consensus 25 E~L~~~g~~~~~~~ 38 (73)
T 3ax2_A 25 EELLAQGDYEKGVD 38 (73)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHH
Confidence 33444444444444
Done!