BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047519
(892 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 191/466 (40%), Gaps = 58/466 (12%)
Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
S N G++P L L L SN SG + K++ LK L +S N S
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 406 LKVNSSFPNLFGLGLSACNISEFPDILRTLHQ-----LQWFNLSKNRIHGRISSWMWDLG 460
+ + +L L LS+ N S IL L Q LQ L N G+I + +
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-- 416
Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM--NNFNGKISQKFVXXX 518
+ L L LS N+L+ P+++ L+ K+ D+++ N G+I Q+ +
Sbjct: 417 CSELVSLHLSFNYLSGTI---PSSLGSLS-------KLRDLKLWLNMLEGEIPQELMYVK 466
Query: 519 XXXXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
L NC +L + + NN++ P W+ L L +L L +N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 579 WGPI----GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYL--------------------- 613
G I GD +++ +DL+ N F G +P
Sbjct: 527 SGNIPAELGDCRSLI------WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 614 DNFKAMMHGNNNSVEV-----DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLS 668
D K HG N +E + + L++ N G M +D+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 669 SNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ 728
N G IP+ + + HN+++G IP + +L + LDLSSN L G IP
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILN-LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 729 LTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPL 774
+++L L+ ++LS N GPIP+ QF TF ++ N GLCG+PL
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 115/440 (26%), Positives = 180/440 (40%), Gaps = 97/440 (22%)
Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSG-TTELYDFAKLKNLKWLFVSNNRLSLST 404
S++ ++GS+ S +L L L N LSG T L LK+L VS+N L
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL---- 138
Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHG-RISSWMWDLGITA 463
FP GL L+ L+ +LS N I G + W+ G
Sbjct: 139 ------DFPGKVSGGLK-------------LNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXXXXXX 523
L +L +S N ++ ++ + + LD+ NNF+ I
Sbjct: 180 LKHLAISGNKISG----------DVDVSRCVNLEFLDVSSNNFSTGIP------------ 217
Query: 524 XXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
L +C L+ LD+ N+++ +F + EL++L + SN+F GPI
Sbjct: 218 -------------FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI- 263
Query: 584 DNTTIVPFPRFRIIDLSHNEFTGVLP---TGYLDNFKAM-MHGNN---------NSVEVD 630
+P + + L+ N+FTG +P +G D + + GN+ S +
Sbjct: 264 ---PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 631 YMTPLNSSNYYESI----ILTIKGIDI--------------QIERILTIFMTIDLSSNKF 672
L+S+N+ + +L ++G+ + + + +T+DLSSN F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 673 QGGI-PEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS 731
G I P + + +N TG IP L N +E+ SL LS N L G IP+ L S
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 732 LKYLSVLNLSYNQFEGPIPQ 751
L L L L N EG IPQ
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQ 460
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 163/387 (42%), Gaps = 42/387 (10%)
Query: 368 LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNIS- 426
L + N++SG D ++ NL++L VS+N S + S L L +S +S
Sbjct: 183 LAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPFLGDCSA--LQHLDISGNKLSG 237
Query: 427 EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS-NNFLTNIEYFPPTNM 485
+F + T +L+ N+S N+ G I L + +L YL L+ N F I F
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 486 TQLNFDSNLTHKVLDMRMNNFNGKISQKF-VXXXXXXXXXXXXXXXXXXXXXSLVNCHHL 544
L LD+ N+F G + F +L+ L
Sbjct: 294 DTL--------TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 545 EVLDVGNNQINDNFPNWLEIL-PELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE 603
+VLD+ N+ + P L L L L L SN F GPI N P + + L +N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 604 FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFM 663
FTG +P L N ++ S+ + + NY I + G + R L +++
Sbjct: 406 FTGKIPP-TLSNCSELV-----SLHLSF-------NYLSGTIPSSLG-SLSKLRDLKLWL 451
Query: 664 TIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG 723
N +G IP+ + + N+LTG+IPS L N T + + LS+N L G
Sbjct: 452 ------NMLEGEIPQELMYVKTLETLI-LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 724 HIPTQLTSLKYLSVLNLSYNQFEGPIP 750
IP + L+ L++L LS N F G IP
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIP 531
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 191/466 (40%), Gaps = 58/466 (12%)
Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
S N G++P L L L SN SG + K++ LK L +S N S
Sbjct: 298 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Query: 406 LKVNSSFPNLFGLGLSACNISEFPDILRTLHQ-----LQWFNLSKNRIHGRISSWMWDLG 460
+ + +L L LS+ N S IL L Q LQ L N G+I + +
Sbjct: 358 ESLTNLSASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-- 413
Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM--NNFNGKISQKFVXXX 518
+ L L LS N+L+ P+++ L+ K+ D+++ N G+I Q+ +
Sbjct: 414 CSELVSLHLSFNYLSGTI---PSSLGSLS-------KLRDLKLWLNMLEGEIPQELMYVK 463
Query: 519 XXXXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
L NC +L + + NN++ P W+ L L +L L +N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 579 WGPI----GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYL--------------------- 613
G I GD +++ +DL+ N F G +P
Sbjct: 524 SGNIPAELGDCRSLI------WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 614 DNFKAMMHGNNNSVEV-----DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLS 668
D K HG N +E + + L++ N G M +D+S
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 669 SNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ 728
N G IP+ + + HN+++G IP + +L + LDLSSN L G IP
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILN-LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 729 LTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPL 774
+++L L+ ++LS N GPIP+ QF TF ++ N GLCG+PL
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 115/440 (26%), Positives = 180/440 (40%), Gaps = 97/440 (22%)
Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSG-TTELYDFAKLKNLKWLFVSNNRLSLST 404
S++ ++GS+ S +L L L N LSG T L LK+L VS+N L
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL---- 135
Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHG-RISSWMWDLGITA 463
FP GL L+ L+ +LS N I G + W+ G
Sbjct: 136 ------DFPGKVSGGLK-------------LNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXXXXXX 523
L +L +S N ++ ++ + + LD+ NNF+ I
Sbjct: 177 LKHLAISGNKISG----------DVDVSRCVNLEFLDVSSNNFSTGIP------------ 214
Query: 524 XXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
L +C L+ LD+ N+++ +F + EL++L + SN+F GPI
Sbjct: 215 -------------FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI- 260
Query: 584 DNTTIVPFPRFRIIDLSHNEFTGVLP---TGYLDNFKAM-MHGNN---------NSVEVD 630
+P + + L+ N+FTG +P +G D + + GN+ S +
Sbjct: 261 ---PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 317
Query: 631 YMTPLNSSNYYESI----ILTIKGIDI--------------QIERILTIFMTIDLSSNKF 672
L+S+N+ + +L ++G+ + + + +T+DLSSN F
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 377
Query: 673 QGGI-PEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS 731
G I P + + +N TG IP L N +E+ SL LS N L G IP+ L S
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 732 LKYLSVLNLSYNQFEGPIPQ 751
L L L L N EG IPQ
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQ 457
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 161/387 (41%), Gaps = 42/387 (10%)
Query: 368 LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNIS- 426
L + N++SG D ++ NL++L VS+N S + S L L +S +S
Sbjct: 180 LAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPFLGDCSA--LQHLDISGNKLSG 234
Query: 427 EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS-NNFLTNIEYFPPTNM 485
+F + T +L+ N+S N+ G I L + +L YL L+ N F I F
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 486 TQLNFDSNLTHKVLDMRMNNFNGKISQKF-VXXXXXXXXXXXXXXXXXXXXXSLVNCHHL 544
L LD+ N+F G + F +L+ L
Sbjct: 291 DTL--------TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 545 EVLDVGNNQINDNFPNWLEIL-PELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE 603
+VLD+ N+ + P L L L L L SN F GPI N P + + L +N
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 604 FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFM 663
FTG +P L N ++ S+ + + NY I + G L+
Sbjct: 403 FTGKIPP-TLSNCSELV-----SLHLSF-------NYLSGTIPSSLGS-------LSKLR 442
Query: 664 TIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG 723
+ L N +G IP+ + + N+LTG+IPS L N T + + LS+N L G
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLI-LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 724 HIPTQLTSLKYLSVLNLSYNQFEGPIP 750
IP + L+ L++L LS N F G IP
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIP 528
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 19/248 (7%)
Query: 537 SLVNCHHLEVLDVGN-NQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR 595
SL N +L L +G N + P + L +L L + G I D + +
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK--TLV 128
Query: 596 IIDLSHNEFTGVLPTGY--LDNFKAMMHGNN---NSVEVDYMTPLNSSNYYESIILTIKG 650
+D S+N +G LP L N + N ++ Y + S + S+ ++
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS---FSKLFTSMTISRNR 185
Query: 651 IDIQIERILTIF--MTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIP--SLLR 706
+ +I +DLS N +G V+ ++ N+L D+ L +
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 707 NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGN 766
NL LDL +N + G +P LT LK+L LN+S+N G IPQG F +Y N
Sbjct: 245 NL---NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Query: 767 SGLCGFPL 774
LCG PL
Sbjct: 302 KCLCGSPL 309
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTT--ELYDFAKLKNLKWLFVSNNRLSLS 403
FS N LSG++P S+ L NL+ + NR+SG F+KL + +S NRL+
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL--FTSMTISRNRLT-- 187
Query: 404 TKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQ---WFNLSKN--RIHGRISSWMWD 458
K+ +F NL N++ F D+ R + + F KN +IH +S +D
Sbjct: 188 --GKIPPTFANL--------NLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 459 LGITALYY----LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ 512
LG L LDL NN + P +TQL F H L++ NN G+I Q
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTL---PQGLTQLKF----LHS-LNVSFNNLCGEIPQ 286
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 346 FSSNQLSGSIPSSVY-ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
SN+LS S+PS + L L LL L N+L T F +LKNL+ L+V++N+L +
Sbjct: 44 LQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-AL 100
Query: 405 KLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
+ V NL L L + P + +L +L + +L N + + ++D +T+
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD-KLTS 158
Query: 464 LYYLDLSNNFLTNI---EYFPPTNMTQLNFDSNLTHKV 498
L L L NN L + + T + L D+N +V
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 17/145 (11%)
Query: 335 VRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLF 394
+ G + +FSSNQ++ P + L L L + SN++S ++ AKL NL+ L
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLI 201
Query: 395 VSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDI--LRTLHQLQWFNLSKNRIHGRI 452
+NN++S T L + NL L L N ++ DI L +L L +L+ N +I
Sbjct: 202 ATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDLDLANN----QI 251
Query: 453 SSWMWDLGITALYYLDLSNNFLTNI 477
S+ G+T L L L N ++NI
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNI 276
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 45/250 (18%)
Query: 367 LLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFP--NLFGLGLSACN 424
LL L +N+++ + DF LKNL L + NN++S K+ + P L L LS
Sbjct: 56 LLDLQNNKITEIKD-GDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQ 111
Query: 425 ISEFPDIL-RTLHQLQWFNLSKNRIHGRISSWMWDL---------------------GIT 462
+ E P+ + +TL +L+ ++ + + + + G+
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFN--GKISQKFVXXXXX 520
L Y+ +++ +T I P ++T+L+ D N KV + N K+ F
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF------ 225
Query: 521 XXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
SL N HL L + NN++ P L +QV+ L +N
Sbjct: 226 -------NSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Query: 581 PIGDNTTIVP 590
IG N P
Sbjct: 278 -IGSNDFCPP 286
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 45/250 (18%)
Query: 367 LLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFP--NLFGLGLSACN 424
LL L +N+++ + DF LKNL L + NN++S K+ + P L L LS
Sbjct: 56 LLDLQNNKITEIKD-GDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQ 111
Query: 425 ISEFPDIL-RTLHQLQWFNLSKNRIHGRISSWMWDL---------------------GIT 462
+ E P+ + +TL +L+ ++ + + + + G+
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFN--GKISQKFVXXXXX 520
L Y+ +++ +T I P ++T+L+ D N KV + N K+ F
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF------ 225
Query: 521 XXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
SL N HL L + NN++ P L +QV+ L +N
Sbjct: 226 -------NSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Query: 581 PIGDNTTIVP 590
IG N P
Sbjct: 278 -IGSNDFCPP 286
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 45/245 (18%)
Query: 335 VRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLF 394
+ G + FSSNQ++ P + L L L + SN++S ++ AKL NL+ L
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLI 201
Query: 395 VSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDI--LRTLHQLQWFNLSKNRIHG-- 450
+NN++S T L + NL L L N ++ DI L +L L +L+ N+I
Sbjct: 202 ATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 451 ----------------RISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL 494
+IS+ G+TAL L+L+ N L +I P +N+ L +
Sbjct: 256 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTY---- 309
Query: 495 THKVLDMRMNNFNGKISQKFVXXXXXXXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQI 554
L + NN IS SL N ++ L G+NQI
Sbjct: 310 ----LTLYFNN----ISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQI 361
Query: 555 NDNFP 559
+D P
Sbjct: 362 SDLTP 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 65/255 (25%)
Query: 335 VRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLF 394
+ G + FSSNQ++ P + L L L + SN++S ++ AKL NL+ L
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLI 201
Query: 395 VSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDI--LRTLHQLQWFNLSKNRIHG-- 450
+NN++S T L + NL L L N ++ DI L +L L +L+ N+I
Sbjct: 202 ATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 451 ----------------RISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL 494
+IS+ G+TAL L+L+ N L +I P +N+ L + +
Sbjct: 256 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLY 313
Query: 495 THKVLDM----------RMNNFNGKISQKFVXXXXXXXXXXXXXXXXXXXXXSLVNCHHL 544
+ + D+ R+ +N K+S SL N ++
Sbjct: 314 FNNISDISPVSSLTKLQRLFFYNNKVSD----------------------VSSLANLTNI 351
Query: 545 EVLDVGNNQINDNFP 559
L G+NQI+D P
Sbjct: 352 NWLSAGHNQISDLTP 366
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
N DI + LRNLT LDLS L PT SL L VLN+S+N F
Sbjct: 484 NFLPDIFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752
N DI + LRNLT LDLS L PT SL L VLN++ NQ + +P G
Sbjct: 460 NFLPDIFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDG 512
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
N DI + LRNLT LDLS L PT SL L VLN+S+N F
Sbjct: 460 NFLPDIFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 538 LVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRII 597
L +L+ L +GNNQ+ND P L L +L L N+ I D + + P +
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNK----ISDISPLASLPNLIEV 206
Query: 598 DLSHNEFTGVLPTGYLDNF 616
L N+ + V P L N
Sbjct: 207 HLKDNQISDVSPLANLSNL 225
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
N DI + LRNLT LDLS L PT SL L VLN+S+N F
Sbjct: 165 NFLPDIFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 409 NSSFPNLFGLGLSACNISE------FPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
N +F L G+ C++S+ + L+ L++N I+ + W G+T
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLT 323
Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV 515
L L+LS NFL +I+ N+ +L +VLD+ N+ Q F+
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKL--------EVLDLSYNHIRALGDQSFL 368
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 544 LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE 603
LEVLDV NN + D+F + LP LQ L + N+ + D + FP ++ +S N+
Sbjct: 433 LEVLDVSNNNL-DSFSLF---LPRLQELYISRNKL-KTLPDASL---FPVLLVMKISRNQ 484
Query: 604 FTGVLPTGYLDNFKAM----MHGNN---NSVEVDYMT 633
V P G D ++ +H N + +DY++
Sbjct: 485 LKSV-PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 537 SLVNCHHLEVLDV-------------GNNQINDNFPNWLEILPELQVLILRSNRFWG-PI 582
+LVNC ++ + V NNQI P + L LQ L SN+ P
Sbjct: 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74
Query: 583 GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH 621
G + + +DL+ N + P G DN K++ H
Sbjct: 75 GVFDKLTQLTQ---LDLNDNHLKSI-PRGAFDNLKSLTH 109
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 413 PNLFGLGLSACNISEF--PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS 470
P L LS +ISE PDI L +L+ LS NRI R + L L YLD+S
Sbjct: 52 PRTKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVS 108
Query: 471 NNFLTNIEYFPPTNMTQLNFDSN 493
+N L NI P ++ L+ N
Sbjct: 109 HNRLQNISCCPMASLRHLDLSFN 131
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 664 TIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLT-EVESLDLSSNMLV 722
T+D+S N + +S N LTG S+ R L +V+ LDL +N ++
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG---SVFRCLPPKVKVLDLHNNRIM 463
Query: 723 GHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752
IP +T L+ L LN++ NQ + +P G
Sbjct: 464 S-IPKDVTHLQALQELNVASNQLKS-VPDG 491
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL 400
+ S+NQ++ P + L N+ L L N+L T++ A LKNL WLF+ N++
Sbjct: 72 NLSNNQITDISP--IQYLPNVTKLFLNGNKL---TDIKPLANLKNLGWLFLDENKV 122
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 368 LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISE 427
L + SN++S ++ AKL NL+ L +NN++S T L + NL L L+ + +
Sbjct: 181 LDISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD 234
Query: 428 FPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPP-TNMT 486
L +L L +L+ N +IS+ G+T L L L N ++NI T +T
Sbjct: 235 I-GTLASLTNLTDLDLANN----QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALT 289
Query: 487 QLNFDSN 493
L + N
Sbjct: 290 NLELNEN 296
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 597 IDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPL-NSSNYYESIILTIKGIDIQI 655
I+ S+N+ T + P L ++ NN ++ +TPL N +N + + DI
Sbjct: 72 INFSNNQLTDITPLKNLTKLVDILMNNN---QIADITPLANLTNLTGLTLFNNQITDIDP 128
Query: 656 ERILTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLD 715
+ LT ++LSSN + +S N D+ L NLT +E LD
Sbjct: 129 LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLD 182
Query: 716 LSSNMLVG-HIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752
+SSN + + +LT+L+ L N NQ P G
Sbjct: 183 ISSNKVSDISVLAKLTNLESLIATN---NQISDITPLG 217
>pdb|3VA6|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
pdb|3VA6|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 163 TTFLHDDLEEEIYMTQLDGFKVAE---KENWLQEESFIYLLLHVDDMEIASKSKDEIEKL 219
T+ L D E+ +Y+ DGF ++ + + E + L++++ ++ +++D++ +
Sbjct: 600 TSLLFDPKEDCVYLGGADGFGISHSNLEATYQPERPILLTALYINNQLVSPRTRDDVPNI 659
Query: 220 K---------TQLNQEFEMKDL 232
+ Q N FE+ DL
Sbjct: 660 RYTNSIKLKYDQNNLSFELSDL 681
>pdb|3OTT|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
pdb|3OTT|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 163 TTFLHDDLEEEIYMTQLDGFKVAE---KENWLQEESFIYLLLHVDDMEIASKSKDEIEKL 219
T+ L D E+ +Y+ DGF ++ + + E + L++++ ++ +++D++ +
Sbjct: 600 TSLLFDPKEDCVYLGGADGFGISHSNLEATYQPERPILLTALYINNQLVSPRTRDDVPNI 659
Query: 220 K---------TQLNQEFEMKDL 232
+ Q N FE+ DL
Sbjct: 660 RYTNSIKLKYDQNNLSFELSDL 681
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 368 LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISE 427
L + SN++S ++ AKL NL+ L +NN++S T L + NL L L+ + +
Sbjct: 182 LDISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD 235
Query: 428 FPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNI 477
L +L L +L+ N +IS+ G+T L L L N ++NI
Sbjct: 236 I-GTLASLTNLTDLDLANN----QISNLAPLSGLTKLTELKLGANQISNI 280
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 597 IDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPL-NSSNYYESIILTIKGIDIQI 655
I+ S+N+ T + P L ++ NN ++ +TPL N +N + + DI
Sbjct: 73 INFSNNQLTDITPLKNLTKLVDILMNNN---QIADITPLANLTNLTGLTLFNNQITDIDP 129
Query: 656 ERILTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLD 715
+ LT ++LSSN + +S N D+ L NLT +E LD
Sbjct: 130 LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLD 183
Query: 716 LSSNMLVG-HIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752
+SSN + + +LT+L+ L N NQ P G
Sbjct: 184 ISSNKVSDISVLAKLTNLESLIATN---NQISDITPLG 218
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 538 LVNCHHLEVLDVGNNQI----NDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPR 593
L N HL ++D+ NN+I N +F N ++L LIL NR T
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL----TLILSYNRLR--CIPPRTFDGLKS 103
Query: 594 FRIIDLSHNEFTGVLPTGYLDNFKAMMH 621
R++ L N+ + V+P G ++ A+ H
Sbjct: 104 LRLLSLHGNDIS-VVPEGAFNDLSALSH 130
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 15/112 (13%)
Query: 368 LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISE 427
L + SN++S ++ AKL NL+ L +NN++S T L + NL L L N ++
Sbjct: 177 LDISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQ 227
Query: 428 FPDI--LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNI 477
DI L +L L +L+ N +IS+ G+T L L L N ++NI
Sbjct: 228 LKDIGTLASLTNLTDLDLANN----QISNLAPLSGLTKLTELKLGANQISNI 275
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 15/112 (13%)
Query: 368 LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISE 427
L + SN++S ++ AKL NL+ L +NN++S T L + NL L L N ++
Sbjct: 177 LDISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQ 227
Query: 428 FPDI--LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNI 477
DI L +L L +L+ N +IS+ G+T L L L N ++NI
Sbjct: 228 LKDIGTLASLTNLTDLDLANN----QISNLAPLSGLTKLTELKLGANQISNI 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,318,861
Number of Sequences: 62578
Number of extensions: 1040829
Number of successful extensions: 2480
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2186
Number of HSP's gapped (non-prelim): 243
length of query: 892
length of database: 14,973,337
effective HSP length: 107
effective length of query: 785
effective length of database: 8,277,491
effective search space: 6497830435
effective search space used: 6497830435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)