Query 047519
Match_columns 892
No_of_seqs 1010 out of 5526
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 11:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4E-72 8.6E-77 701.4 45.1 582 7-773 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.4E-57 1.2E-61 564.9 38.2 515 116-773 70-588 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.6E-39 3.5E-44 329.3 -16.8 384 277-751 155-544 (565)
4 KOG4194 Membrane glycoprotein 100.0 4.6E-36 9.9E-41 317.2 7.1 367 342-746 81-452 (873)
5 KOG4194 Membrane glycoprotein 100.0 6.2E-36 1.4E-40 316.1 4.2 378 268-721 71-451 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 6.2E-38 1.3E-42 317.9 -13.2 450 66-605 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.3E-35 2.9E-40 330.4 -2.8 469 86-744 17-487 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 1.5E-33 3.3E-38 299.4 -2.2 343 336-744 29-373 (1255)
9 KOG0618 Serine/threonine phosp 100.0 1.6E-33 3.4E-38 313.9 -3.4 403 230-769 85-489 (1081)
10 KOG0444 Cytoskeletal regulator 100.0 2.4E-32 5.2E-37 290.3 -2.8 370 337-774 5-380 (1255)
11 PLN03210 Resistant to P. syrin 99.9 5.4E-22 1.2E-26 249.0 27.4 336 300-720 552-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.6E-21 7.8E-26 241.7 26.8 337 230-603 552-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 2.5E-21 5.5E-26 225.0 19.0 267 339-731 201-467 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 1.9E-21 4E-26 226.1 17.0 264 388-752 201-464 (788)
15 KOG4237 Extracellular matrix p 99.8 2.1E-23 4.5E-28 212.6 -5.1 398 283-743 68-498 (498)
16 KOG4237 Extracellular matrix p 99.8 8.6E-23 1.9E-27 208.2 -4.8 416 252-719 61-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-19 3.2E-24 212.0 13.8 246 389-722 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.5E-19 5.5E-24 210.0 13.5 277 364-736 179-460 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.5E-23 190.6 -1.2 86 659-745 220-319 (319)
20 KOG0617 Ras suppressor protein 99.7 3.2E-18 7E-23 155.2 -2.5 165 514-731 29-194 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 8E-18 1.7E-22 183.9 -0.4 284 367-721 2-319 (319)
22 PLN03150 hypothetical protein; 99.6 4.2E-15 9.1E-20 174.4 9.2 118 661-779 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 1.1E-16 2.5E-21 145.2 -4.1 162 538-751 29-191 (264)
24 PLN03150 hypothetical protein; 99.6 1.8E-14 3.8E-19 169.2 12.8 152 5-182 368-528 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 4.2E-13 9.2E-18 144.0 -3.5 102 497-605 78-179 (722)
26 COG4886 Leucine-rich repeat (L 99.2 4.1E-11 8.8E-16 134.9 7.7 199 498-752 97-296 (394)
27 KOG0532 Leucine-rich repeat (L 99.1 2E-12 4.4E-17 138.9 -3.6 103 496-605 100-202 (722)
28 COG4886 Leucine-rich repeat (L 99.1 2.1E-10 4.6E-15 129.0 8.9 179 413-610 116-295 (394)
29 KOG1909 Ran GTPase-activating 99.1 1.9E-11 4E-16 124.6 -0.3 97 167-295 28-133 (382)
30 KOG1909 Ran GTPase-activating 99.0 5.8E-12 1.3E-16 128.2 -5.8 112 277-398 180-308 (382)
31 KOG3207 Beta-tubulin folding c 99.0 1.4E-10 3.1E-15 121.3 2.5 211 336-581 118-341 (505)
32 KOG4658 Apoptotic ATPase [Sign 98.9 7E-10 1.5E-14 133.1 4.9 105 90-204 545-652 (889)
33 KOG1259 Nischarin, modulator o 98.9 2E-10 4.3E-15 114.1 -0.6 105 363-476 284-388 (490)
34 KOG3207 Beta-tubulin folding c 98.9 3.3E-10 7.2E-15 118.7 0.6 186 412-607 145-341 (505)
35 KOG1259 Nischarin, modulator o 98.9 3.3E-10 7.1E-15 112.6 0.4 61 516-578 350-411 (490)
36 PF14580 LRR_9: Leucine-rich r 98.8 2.4E-09 5.1E-14 103.1 3.8 38 412-449 87-126 (175)
37 PF08263 LRRNT_2: Leucine rich 98.8 7.3E-09 1.6E-13 74.8 4.2 40 8-60 2-43 (43)
38 PF14580 LRR_9: Leucine-rich r 98.8 3.1E-09 6.7E-14 102.3 2.3 104 338-444 41-148 (175)
39 KOG0531 Protein phosphatase 1, 98.7 2.4E-09 5.2E-14 120.6 1.6 104 495-605 96-199 (414)
40 KOG0531 Protein phosphatase 1, 98.7 2.1E-09 4.6E-14 121.1 0.2 246 413-750 72-322 (414)
41 PF13855 LRR_8: Leucine rich r 98.7 6.1E-09 1.3E-13 82.3 1.4 60 685-745 2-61 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.6 1.5E-08 3.3E-13 121.8 3.6 131 86-247 519-653 (889)
43 PF13855 LRR_8: Leucine rich r 98.6 1.3E-08 2.8E-13 80.4 1.7 61 660-721 1-61 (61)
44 KOG2120 SCF ubiquitin ligase, 98.4 4E-09 8.6E-14 105.1 -8.0 181 91-314 186-371 (419)
45 KOG1859 Leucine-rich repeat pr 98.3 3.4E-08 7.3E-13 109.6 -5.1 105 495-605 188-292 (1096)
46 KOG1859 Leucine-rich repeat pr 98.3 4.6E-08 1E-12 108.5 -4.2 127 339-476 164-293 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.2 1.7E-08 3.8E-13 100.7 -7.6 160 231-398 205-373 (419)
48 KOG4579 Leucine-rich repeat (L 98.2 5.8E-08 1.3E-12 86.0 -3.8 87 661-752 54-141 (177)
49 COG5238 RNA1 Ran GTPase-activa 98.1 5.1E-07 1.1E-11 89.2 -1.6 191 167-399 28-253 (388)
50 KOG2982 Uncharacterized conser 98.1 8.5E-07 1.8E-11 88.8 -0.1 82 519-600 200-287 (418)
51 KOG2982 Uncharacterized conser 98.0 1E-06 2.2E-11 88.3 -0.6 64 387-450 198-263 (418)
52 KOG4579 Leucine-rich repeat (L 97.8 3.2E-06 6.9E-11 75.2 -1.1 81 662-746 29-113 (177)
53 KOG4341 F-box protein containi 97.8 7.7E-07 1.7E-11 93.4 -6.2 305 90-444 138-460 (483)
54 COG5238 RNA1 Ran GTPase-activa 97.7 7.9E-06 1.7E-10 81.0 0.6 22 231-252 25-46 (388)
55 PF12799 LRR_4: Leucine Rich r 97.7 2.4E-05 5.3E-10 56.5 2.6 36 710-746 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.6 6.1E-05 1.3E-09 54.4 3.8 37 413-449 1-37 (44)
57 PRK15386 type III secretion pr 97.6 0.00022 4.9E-09 77.4 9.8 75 516-604 50-124 (426)
58 PRK15386 type III secretion pr 97.6 0.0002 4.4E-09 77.7 8.5 55 385-446 49-104 (426)
59 KOG1644 U2-associated snRNP A' 97.5 0.00014 3E-09 69.6 5.1 106 339-447 42-151 (233)
60 KOG4341 F-box protein containi 97.5 3.6E-06 7.8E-11 88.5 -6.3 107 283-398 139-252 (483)
61 KOG1644 U2-associated snRNP A' 97.3 0.00045 9.7E-09 66.2 5.7 109 306-425 42-152 (233)
62 KOG3665 ZYG-1-like serine/thre 97.2 0.00012 2.5E-09 86.4 0.9 46 277-325 215-266 (699)
63 KOG3665 ZYG-1-like serine/thre 97.0 0.0004 8.6E-09 82.1 3.3 135 65-213 123-267 (699)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00057 1.2E-08 68.4 2.6 18 432-449 112-129 (260)
65 KOG2739 Leucine-rich acidic nu 96.7 0.0014 3E-08 65.8 3.7 104 337-443 41-150 (260)
66 PF13306 LRR_5: Leucine rich r 96.1 0.015 3.2E-07 53.7 6.7 117 493-618 11-127 (129)
67 PF13306 LRR_5: Leucine rich r 95.8 0.02 4.4E-07 52.7 6.2 13 514-526 77-89 (129)
68 KOG2123 Uncharacterized conser 95.6 0.00061 1.3E-08 68.3 -5.1 60 337-398 39-98 (388)
69 KOG2123 Uncharacterized conser 95.5 0.00059 1.3E-08 68.3 -5.4 97 364-468 20-123 (388)
70 PF00560 LRR_1: Leucine Rich R 95.1 0.0064 1.4E-07 36.5 0.1 19 711-730 2-20 (22)
71 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.3E-07 35.5 0.6 20 116-136 1-20 (22)
72 KOG4308 LRR-containing protein 94.5 0.00029 6.2E-09 79.6 -12.3 187 236-450 87-304 (478)
73 KOG1947 Leucine rich repeat pr 94.2 0.0064 1.4E-07 70.4 -2.5 37 412-448 268-307 (482)
74 KOG1947 Leucine rich repeat pr 94.0 0.0056 1.2E-07 70.9 -3.6 34 281-314 187-222 (482)
75 KOG0473 Leucine-rich repeat pr 92.0 0.012 2.5E-07 57.8 -4.0 84 659-746 41-124 (326)
76 PF13504 LRR_7: Leucine rich r 91.5 0.13 2.9E-06 28.5 1.5 16 414-429 2-17 (17)
77 PF13504 LRR_7: Leucine rich r 89.6 0.17 3.6E-06 28.2 0.8 13 710-722 2-14 (17)
78 KOG4308 LRR-containing protein 89.6 0.007 1.5E-07 68.6 -9.3 20 277-296 285-304 (478)
79 KOG0473 Leucine-rich repeat pr 89.5 0.012 2.5E-07 57.8 -6.4 81 64-152 42-122 (326)
80 smart00369 LRR_TYP Leucine-ric 85.6 0.67 1.5E-05 28.9 2.0 14 709-722 2-15 (26)
81 smart00370 LRR Leucine-rich re 85.6 0.67 1.5E-05 28.9 2.0 14 709-722 2-15 (26)
82 KOG3864 Uncharacterized conser 81.2 0.25 5.4E-06 48.0 -1.9 81 495-575 102-185 (221)
83 smart00369 LRR_TYP Leucine-ric 80.9 1.6 3.4E-05 27.2 2.3 16 542-557 2-17 (26)
84 smart00370 LRR Leucine-rich re 80.9 1.6 3.4E-05 27.2 2.3 16 542-557 2-17 (26)
85 KOG3864 Uncharacterized conser 77.7 0.45 9.8E-06 46.3 -1.4 80 364-446 102-186 (221)
86 PF13516 LRR_6: Leucine Rich r 70.1 0.74 1.6E-05 28.1 -1.3 15 542-556 2-16 (24)
87 smart00365 LRR_SD22 Leucine-ri 69.1 3.9 8.5E-05 25.6 1.8 15 708-722 1-15 (26)
88 smart00364 LRR_BAC Leucine-ric 64.9 4.1 8.9E-05 25.5 1.2 18 413-430 2-19 (26)
89 KOG4242 Predicted myosin-I-bin 63.0 71 0.0015 35.7 10.9 21 437-457 215-235 (553)
90 KOG3763 mRNA export factor TAP 59.2 6.5 0.00014 44.3 2.5 43 433-475 241-283 (585)
91 smart00368 LRR_RI Leucine rich 56.7 8.4 0.00018 24.5 1.7 14 709-722 2-15 (28)
92 KOG3763 mRNA export factor TAP 54.7 6.6 0.00014 44.3 1.6 15 437-451 271-285 (585)
93 PF08693 SKG6: Transmembrane a 53.7 14 0.0003 25.9 2.4 20 807-826 13-32 (40)
94 KOG4242 Predicted myosin-I-bin 49.4 35 0.00076 38.0 5.9 109 495-605 355-481 (553)
95 TIGR00864 PCC polycystin catio 37.6 21 0.00046 48.4 2.5 34 691-724 1-34 (2740)
96 PF04478 Mid2: Mid2 like cell 30.5 17 0.00036 33.8 0.0 7 809-815 52-58 (154)
97 PF01034 Syndecan: Syndecan do 29.8 18 0.00039 28.1 0.1 16 810-825 17-32 (64)
98 smart00367 LRR_CC Leucine-rich 29.4 40 0.00086 20.8 1.6 13 114-126 1-13 (26)
99 KOG1665 AFH1-interacting prote 26.6 74 0.0016 31.5 3.6 13 170-182 197-209 (302)
100 TIGR00864 PCC polycystin catio 23.2 51 0.0011 45.1 2.4 32 666-698 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-72 Score=701.43 Aligned_cols=582 Identities=28% Similarity=0.416 Sum_probs=465.8
Q ss_pred CHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCCCCccccceEecCCCCeEEEEECCCCCCCCCCCCCCCc
Q 047519 7 SHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSL 86 (892)
Q Consensus 7 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l 86 (892)
.++|+.||++||+++.++ . ..+.+|..+.+||.|+||+|++ .++|+.|+|++++++|.+++ ++
T Consensus 27 ~~~~~~~l~~~~~~~~~~--~------------~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~ 89 (968)
T PLN00113 27 HAEELELLLSFKSSINDP--L------------KYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AI 89 (968)
T ss_pred CHHHHHHHHHHHHhCCCC--c------------ccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HH
Confidence 568999999999999654 2 3678998788999999999986 47999999999999999887 89
Q ss_pred cCCCCCCeEecCCCCCCCCCCCCcC-cCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhccc
Q 047519 87 FFLPHIRKLNLAFNDFNYSEISSGF-SQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTF 165 (892)
Q Consensus 87 ~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~ 165 (892)
..+++|++|+|++|.+.+. +|..+ ..+++||+|+|++|++++.+|. + .+
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~--~l------------------------- 139 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--G--SI------------------------- 139 (968)
T ss_pred hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--c--cc-------------------------
Confidence 9999999999999999876 88665 4999999999999999988874 3 33
Q ss_pred CCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcc
Q 047519 166 LHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEIC 244 (892)
Q Consensus 166 ~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~ 244 (892)
++|++|+|++|.+.+..|.. +.+ ++|++|+|++| .+.+.+| ..++++++|++|+++
T Consensus 140 ---~~L~~L~Ls~n~~~~~~p~~~~~l--~~L~~L~L~~n--~l~~~~p----------------~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 140 ---PNLETLDLSNNMLSGEIPNDIGSF--SSLKVLDLGGN--VLVGKIP----------------NSLTNLTSLEFLTLA 196 (968)
T ss_pred ---CCCCEEECcCCcccccCChHHhcC--CCCCEEECccC--cccccCC----------------hhhhhCcCCCeeecc
Confidence 34444444444444444433 444 56666666666 6666666 566666777777777
Q ss_pred cCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceee
Q 047519 245 RNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKA 324 (892)
Q Consensus 245 ~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~ 324 (892)
+|.+. +.+|. .++++++|++|++++|.+.+.+|..++++++|++|+++ +|.+.+.
T Consensus 197 ~n~l~---------------------~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~---~n~l~~~ 251 (968)
T PLN00113 197 SNQLV---------------------GQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV---YNNLTGP 251 (968)
T ss_pred CCCCc---------------------CcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc---Cceeccc
Confidence 76443 33444 66677777777777777777777777777777777777 7777776
Q ss_pred cc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCC
Q 047519 325 VK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403 (892)
Q Consensus 325 ~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 403 (892)
+| .+ +++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++| .+.
T Consensus 252 ~p~~l-------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n--~~~ 321 (968)
T PLN00113 252 IPSSL-------GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSN--NFT 321 (968)
T ss_pred cChhH-------hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCC--ccC
Confidence 66 66 677777777777777777777777777777777777777766666 55666666666666666 333
Q ss_pred ccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCC
Q 047519 404 TKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPT 483 (892)
Q Consensus 404 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 483 (892)
+ .+|..+..+++|+.|++++|.+.+.+|..+..+ ++|+.|++++|++++..|..+.
T Consensus 322 ~----------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 322 G----------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH--NNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred C----------------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCC--CCCcEEECCCCeeEeeCChhHh
Confidence 3 345556666677777777777766666666665 6777777777777666665544
Q ss_pred CCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc
Q 047519 484 NMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE 563 (892)
Q Consensus 484 ~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 563 (892)
.+. +|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+.
T Consensus 378 ~~~--------~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 378 SSG--------NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred CcC--------CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence 443 677888888888888888888899999999999999999999999999999999999999999998888
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccce
Q 047519 564 ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYES 643 (892)
Q Consensus 564 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 643 (892)
.+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+ .
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~-~----------------------------- 496 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL-G----------------------------- 496 (968)
T ss_pred cCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChhh-h-----------------------------
Confidence 99999999999999998888764 45889999999999998888543 1
Q ss_pred EEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCC
Q 047519 644 IILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG 723 (892)
Q Consensus 644 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 723 (892)
.++.|+.|+|++|++++.+|..++++++|++|+ |++|+++|.+|..|+++++|+.|||++|+++|
T Consensus 497 --------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 497 --------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLD-LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred --------------hhhccCEEECcCCcceeeCChHHcCccCCCEEE-CCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 167789999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCccccCCCCCCCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 047519 724 HIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP 773 (892)
Q Consensus 724 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 773 (892)
.+|..+..+++|++|++++|+++|.+|..+++.++...++.||+.+||.+
T Consensus 562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-57 Score=564.89 Aligned_cols=515 Identities=27% Similarity=0.361 Sum_probs=383.9
Q ss_pred CCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCc
Q 047519 116 SLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEES 195 (892)
Q Consensus 116 ~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~ 195 (892)
+++.|+|++|.+.|.+|..+. .+++|++|+|+++.+.+.+|..+. .++++|++|+|++|.+.+..|. +.+ ++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip~~~~---~~l~~L~~L~Ls~n~l~~~~p~-~~l--~~ 141 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIF---TTSSSLRYLNLSNNNFTGSIPR-GSI--PN 141 (968)
T ss_pred cEEEEEecCCCccccCChHHh--CCCCCCEEECCCCccCCcCChHHh---ccCCCCCEEECcCCccccccCc-ccc--CC
Confidence 566677777777777777777 666666666666555555554331 1455555555555555443332 223 44
Q ss_pred ccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecCh
Q 047519 196 FIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDS 275 (892)
Q Consensus 196 L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~ 275 (892)
|++|+|++| .+++.+| .
T Consensus 142 L~~L~Ls~n--~~~~~~p----------------~--------------------------------------------- 158 (968)
T PLN00113 142 LETLDLSNN--MLSGEIP----------------N--------------------------------------------- 158 (968)
T ss_pred CCEEECcCC--cccccCC----------------h---------------------------------------------
Confidence 445555544 4444444 3
Q ss_pred hhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcC
Q 047519 276 DYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGS 354 (892)
Q Consensus 276 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~ 354 (892)
.++++++|++|++++|.+.+.+|..++++++|++|+++ +|.+.+.+| .+ +++++|++|++++|.+++.
T Consensus 159 -~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~---~n~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 159 -DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA---SNQLVGQIPREL-------GQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred -HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc---CCCCcCcCChHH-------cCcCCccEEECcCCccCCc
Confidence 34444444444444444444444444555555555555 454444444 44 4555555555555555555
Q ss_pred CCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCC-Ccchhh
Q 047519 355 IPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNIS-EFPDIL 432 (892)
Q Consensus 355 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~-~lp~~l 432 (892)
+|..++++++|++|++++|.+++.+| ..+.++++|++|++++| .+.+..|... .+++|++|++++|.++ .+|..+
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQN--KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCC--eeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 55555555555555555555554444 44555555555555555 3344444433 4556666666666665 678889
Q ss_pred hCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccc
Q 047519 433 RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ 512 (892)
Q Consensus 433 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~ 512 (892)
..+++|+.|++++|.+.+.+|..+..+ ++|+.|++++|.+++..|..+..+. +|+.|++++|++.+.+|.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~~~--------~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSL--PRLQVLQLWSNKFSGEIPKNLGKHN--------NLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcC--CCCCEEECcCCCCcCcCChHHhCCC--------CCcEEECCCCeeEeeCCh
Confidence 999999999999999999999999888 9999999999999998887776665 899999999999999999
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCC
Q 047519 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFP 592 (892)
Q Consensus 513 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 592 (892)
.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+ ..++
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~ 452 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMP 452 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876 7899
Q ss_pred CccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcC
Q 047519 593 RFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKF 672 (892)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 672 (892)
+|+.|++++|++.+.+|..+ + .++|+.||+++|++
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~-~--------------------------------------------~~~L~~L~ls~n~l 487 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSF-G--------------------------------------------SKRLENLDLSRNQF 487 (968)
T ss_pred CCcEEECcCceeeeecCccc-c--------------------------------------------cccceEEECcCCcc
Confidence 99999999999998888532 1 45789999999999
Q ss_pred CCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC
Q 047519 673 QGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752 (892)
Q Consensus 673 ~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 752 (892)
++.+|..+.++++|+.|+ |++|++++.+|..++++++|++|+|++|++++.+|..|..+++|+.|++++|+++|.+|..
T Consensus 488 ~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLK-LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred CCccChhhhhhhccCEEE-CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999975
Q ss_pred C-CCCcccCCccCCCCCCCCCC
Q 047519 753 S-QFNTFRNDSYVGNSGLCGFP 773 (892)
Q Consensus 753 ~-~~~~~~~~~~~gN~~lc~~~ 773 (892)
. .+..+....+.+|+..+..|
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred HhcCcccCEEeccCCcceeeCC
Confidence 3 34456666777887665433
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-39 Score=329.34 Aligned_cols=384 Identities=22% Similarity=0.256 Sum_probs=232.8
Q ss_pred hhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCC
Q 047519 277 YIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSI 355 (892)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~ 355 (892)
.++++.+|..+++.+|++....|..+. ++.|++|+.. .|.+. .+| .+ +.+.+|+.|++..|++. ..
T Consensus 155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~---~N~L~-tlP~~l-------g~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN---SNLLE-TLPPEL-------GGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc---hhhhh-cCChhh-------cchhhhHHHHhhhcccc-cC
Confidence 333444444444444444432222222 4455555544 44432 333 55 55555555555566655 44
Q ss_pred CccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCcchhhhC
Q 047519 356 PSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEFPDILRT 434 (892)
Q Consensus 356 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~ 434 (892)
| +|..+..|++|+++.|.|+ .+|.+...+++++..||+.+|++ . ..|... .+.+|++||+++|.++.+|..+++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl--k-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgn 296 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL--K-EVPDEICLLRSLERLDLSNNDISSLPYSLGN 296 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc--c-cCchHHHHhhhhhhhcccCCccccCCccccc
Confidence 4 5666666666666666665 55545555666666666666633 2 233333 556666666666777777777888
Q ss_pred CCCccEEEccCCCCCCCCchhhhhhCC-CcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccc
Q 047519 435 LHQLQWFNLSKNRIHGRISSWMWDLGI-TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK 513 (892)
Q Consensus 435 l~~L~~L~Ls~n~l~~~~~~~~~~l~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~ 513 (892)
+ .|+.|-+.+|.+.. +-..+-..+. .-|++|.= .++...+..-..- .-..-+ ...+..|.
T Consensus 297 l-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs---~~~~dglS~se~~---------~e~~~t----~~~~~~~~- 357 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS---KIKDDGLSQSEGG---------TETAMT----LPSESFPD- 357 (565)
T ss_pred c-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH---hhccCCCCCCccc---------ccccCC----CCCCcccc-
Confidence 7 78888888887652 1111111100 01111110 1110000000000 000000 00011111
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCC---CcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcC
Q 047519 514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHH---LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVP 590 (892)
Q Consensus 514 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 590 (892)
...+.+.+.|++++-+++ .+|........ .+..+++.|++.. +|..+..+..+.+.-+..|+..+.+|..+ +.
T Consensus 358 ~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l--~~ 433 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVPLEL--SQ 433 (565)
T ss_pred hhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccchHHH--Hh
Confidence 223456777888888887 45554333333 6778888888866 67766666665554444444446666666 77
Q ss_pred CCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCC
Q 047519 591 FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSN 670 (892)
Q Consensus 591 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 670 (892)
+++|..|+|++|.+. .+|.++++ +..|+.||+|.|
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~--------------------------------------------lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGS--------------------------------------------LVRLQTLNLSFN 468 (565)
T ss_pred hhcceeeecccchhh-hcchhhhh--------------------------------------------hhhhheeccccc
Confidence 888888888888876 66765422 455889999999
Q ss_pred cCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519 671 KFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750 (892)
Q Consensus 671 ~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 750 (892)
+|. .+|..+..+..|+.+- .++|++....|+.+.+|.+|..|||.+|.+. .||+.+++|++|++|++.+|+|. .|
T Consensus 469 rFr-~lP~~~y~lq~lEtll-as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~P 543 (565)
T KOG0472|consen 469 RFR-MLPECLYELQTLETLL-ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QP 543 (565)
T ss_pred ccc-cchHHHhhHHHHHHHH-hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CC
Confidence 998 8999999999998886 7889999777777999999999999999998 89999999999999999999998 55
Q ss_pred C
Q 047519 751 Q 751 (892)
Q Consensus 751 ~ 751 (892)
.
T Consensus 544 r 544 (565)
T KOG0472|consen 544 R 544 (565)
T ss_pred H
Confidence 3
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-36 Score=317.18 Aligned_cols=367 Identities=23% Similarity=0.224 Sum_probs=203.2
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEc
Q 047519 342 AEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGL 420 (892)
Q Consensus 342 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L 420 (892)
+.|++++|++...-+..|.++++|+++++.+|.++ .+| .......+|+.|+|.+| .+........ .++.|+.|||
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP-~f~~~sghl~~L~L~~N--~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIP-RFGHESGHLEKLDLRHN--LISSVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcc-cccccccceeEEeeecc--ccccccHHHHHhHhhhhhhhh
Confidence 34555555555444455555555555555555554 444 22222333555555555 2222222222 4455555555
Q ss_pred cCCCCCCcch-hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEE
Q 047519 421 SACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVL 499 (892)
Q Consensus 421 ~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L 499 (892)
+.|.|+++|. .|..-.++++|+|++|+|+..-...|..+ .+|..|.|+.|+++..++..|.+|. .|+.|
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l--nsL~tlkLsrNrittLp~r~Fk~L~--------~L~~L 226 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL--NSLLTLKLSRNRITTLPQRSFKRLP--------KLESL 226 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeecccccccccccccccc--chheeeecccCcccccCHHHhhhcc--------hhhhh
Confidence 5555554442 33333455555555555554444555544 4555555555555555555555554 55555
Q ss_pred ECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCC
Q 047519 500 DMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFW 579 (892)
Q Consensus 500 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 579 (892)
+|..|.|.-.---.|.++++|+.|.+..|.+...-...|..|.++++|+|+.|++...-..|+.++..|+.|+|++|.|.
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 55555554332344556666666666666665444455666666666666666666555556666666666666666665
Q ss_pred CCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhh
Q 047519 580 GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERIL 659 (892)
Q Consensus 580 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 659 (892)
..-+... ...++|++|||++|+|+ .++++.+..+..|..++++.|++.++. ...+..+
T Consensus 307 rih~d~W--sftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~-------------------e~af~~l 364 (873)
T KOG4194|consen 307 RIHIDSW--SFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLA-------------------EGAFVGL 364 (873)
T ss_pred eeecchh--hhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHH-------------------hhHHHHh
Confidence 5444443 44556666666666666 333333444444444444444332221 1123346
Q ss_pred hhheeeecCCCcCCCCChh---hhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCC
Q 047519 660 TIFMTIDLSSNKFQGGIPE---VVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 736 (892)
Q Consensus 660 ~~L~~LdLs~N~l~~~~p~---~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 736 (892)
++|++|||++|.|+..|.+ .|.+++.|+.|. +.+|+|....-.+|.++.+||.|||.+|.|..+-|.+|..+ .|+
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~-l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR-LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhhee-ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence 7777777777777655543 356677777776 77777775555677777777777777777777777777777 677
Q ss_pred EEECCCCcCc
Q 047519 737 VLNLSYNQFE 746 (892)
Q Consensus 737 ~L~ls~N~l~ 746 (892)
.|-+..-.|-
T Consensus 443 ~Lv~nSssfl 452 (873)
T KOG4194|consen 443 ELVMNSSSFL 452 (873)
T ss_pred hhhhcccceE
Confidence 7666554443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-36 Score=316.15 Aligned_cols=378 Identities=19% Similarity=0.204 Sum_probs=313.8
Q ss_pred cceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCC-CCCcCEEEc
Q 047519 268 SVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRG-RRHYAEPHF 346 (892)
Q Consensus 268 ~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~-l~~L~~L~L 346 (892)
.+.|.+|. .-+.|++++|.+...-+..|.++++|+.+++. +|.++ .+|.+ +. ..+|+.|+|
T Consensus 71 ~l~g~lp~-------~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~---~N~Lt-~IP~f-------~~~sghl~~L~L 132 (873)
T KOG4194|consen 71 RLKGFLPS-------QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLN---KNELT-RIPRF-------GHESGHLEKLDL 132 (873)
T ss_pred ccCCcCcc-------ceeeeeccccccccCcHHHHhcCCcceeeeec---cchhh-hcccc-------cccccceeEEee
Confidence 44555554 45789999999998888889999999999998 88875 77855 44 455999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCC
Q 047519 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNI 425 (892)
Q Consensus 347 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l 425 (892)
.+|.|+..-.+++..++.|+.|||+.|.|+ .++...|..-.++++|+|++|+| .......+ .+.+|..|.|+.|.+
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccc--cccccccccccchheeeecccCcc
Confidence 999999888888999999999999999998 67767888888999999999954 33333444 777999999999999
Q ss_pred CCcch-hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCC
Q 047519 426 SEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMN 504 (892)
Q Consensus 426 ~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n 504 (892)
+.+|. .|..+++|+.|+|..|+|.-.--..|..+ ++|+.|.+..|.+.....+.|-.+. ++++|+|+.|
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL--~Sl~nlklqrN~I~kL~DG~Fy~l~--------kme~l~L~~N 279 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL--PSLQNLKLQRNDISKLDDGAFYGLE--------KMEHLNLETN 279 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCc--hhhhhhhhhhcCcccccCcceeeec--------ccceeecccc
Confidence 98885 67779999999999999864334445555 9999999999998887777766665 8899999999
Q ss_pred ccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCC
Q 047519 505 NFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD 584 (892)
Q Consensus 505 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 584 (892)
++...-..++.++++|+.|++++|.|...-++.+..+++|++|+|++|+|+...+..|..+..|++|+|++|++...-..
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence 99887778888999999999999999988888899999999999999999998888899999999999999998654444
Q ss_pred CCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhhee
Q 047519 585 NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMT 664 (892)
Q Consensus 585 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 664 (892)
.+ ..+++|++|||++|.+++.+-+.. ..+..+++|+.
T Consensus 360 af--~~lssL~~LdLr~N~ls~~IEDaa-----------------------------------------~~f~gl~~Lrk 396 (873)
T KOG4194|consen 360 AF--VGLSSLHKLDLRSNELSWCIEDAA-----------------------------------------VAFNGLPSLRK 396 (873)
T ss_pred HH--HHhhhhhhhcCcCCeEEEEEecch-----------------------------------------hhhccchhhhh
Confidence 33 778899999999999986665321 11223889999
Q ss_pred eecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcC
Q 047519 665 IDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNML 721 (892)
Q Consensus 665 LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 721 (892)
|++.+|+|....-..|.++..|+.|| |.+|.|...-|.+|..+ .|+.|.++.-.+
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~Ld-L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLD-LGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eeecCceeeecchhhhccCcccceec-CCCCcceeecccccccc-hhhhhhhcccce
Confidence 99999999966667899999999999 99999999999999999 899887765433
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.2e-38 Score=317.93 Aligned_cols=450 Identities=19% Similarity=0.164 Sum_probs=311.7
Q ss_pred EEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCce
Q 047519 66 VIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLST 145 (892)
Q Consensus 66 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~ 145 (892)
...+.+++|.+. .+.+ .+.++..|.+|++++|++.. +|++++.+..+..|+.|+|.+. .+|+.++ .+.+|+.
T Consensus 47 l~~lils~N~l~-~l~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~--s~~~l~~ 118 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLRE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIG--SLISLVK 118 (565)
T ss_pred hhhhhhccCchh-hccH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHh--hhhhhhh
Confidence 456777888776 3444 68888999999999999877 8889999999999999999887 8898998 8888998
Q ss_pred ecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccc
Q 047519 146 NYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQ 225 (892)
Q Consensus 146 L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~ 225 (892)
|+.+++. ...+|++++ .+..|+.|+..+|++....++...+ .+|..+++.+| ++....|
T Consensus 119 l~~s~n~-~~el~~~i~----~~~~l~dl~~~~N~i~slp~~~~~~--~~l~~l~~~~n--~l~~l~~------------ 177 (565)
T KOG0472|consen 119 LDCSSNE-LKELPDSIG----RLLDLEDLDATNNQISSLPEDMVNL--SKLSKLDLEGN--KLKALPE------------ 177 (565)
T ss_pred hhccccc-eeecCchHH----HHhhhhhhhccccccccCchHHHHH--HHHHHhhcccc--chhhCCH------------
Confidence 8888876 566777777 8888888888888877665555666 77777777777 6655444
Q ss_pred cccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCC
Q 047519 226 EFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTL 305 (892)
Q Consensus 226 ~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 305 (892)
..-.++.|++||...|- -+.+|+ .++.+.+|+-|++..|++. .+| .|..+
T Consensus 178 -----~~i~m~~L~~ld~~~N~----------------------L~tlP~-~lg~l~~L~~LyL~~Nki~-~lP-ef~gc 227 (565)
T KOG0472|consen 178 -----NHIAMKRLKHLDCNSNL----------------------LETLPP-ELGGLESLELLYLRRNKIR-FLP-EFPGC 227 (565)
T ss_pred -----HHHHHHHHHhcccchhh----------------------hhcCCh-hhcchhhhHHHHhhhcccc-cCC-CCCcc
Confidence 22236677777766653 334444 5555555555555555554 233 45555
Q ss_pred CCCcEEecCccccccceeecc--chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhh
Q 047519 306 QSTVVLSTTEAEYMAITKAVK--EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYD 383 (892)
Q Consensus 306 ~~L~~L~l~~~~~n~l~~~~p--~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 383 (892)
..|+++.++ .|++. .+| .. .++.+|..||+..|+++ ..|+.+.-+.+|++||+++|.|++ .| ..
T Consensus 228 s~L~Elh~g---~N~i~-~lpae~~-------~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp-~s 293 (565)
T KOG0472|consen 228 SLLKELHVG---ENQIE-MLPAEHL-------KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LP-YS 293 (565)
T ss_pred HHHHHHHhc---ccHHH-hhHHHHh-------cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CC-cc
Confidence 555555555 44443 333 33 35555555555555555 455555555555555555555552 33 34
Q ss_pred cCCCCCCCEEEcccCCCCC-----------------------------------Ccc-----ccCCCCCCCccEEEccCC
Q 047519 384 FAKLKNLKWLFVSNNRLSL-----------------------------------STK-----LKVNSSFPNLFGLGLSAC 423 (892)
Q Consensus 384 ~~~l~~L~~L~Ls~n~l~~-----------------------------------~~~-----~~~~~~l~~L~~L~L~~n 423 (892)
++++ +|+.|-+.+|++.. .+. .+......+.+.|+++.-
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 5555 55555555554310 000 011113456788888888
Q ss_pred CCCCcchhhhCCCC---ccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEE
Q 047519 424 NISEFPDILRTLHQ---LQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLD 500 (892)
Q Consensus 424 ~l~~lp~~l~~l~~---L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~ 500 (892)
+++.+|+....... .+..+++.|++. .+|..+..+ ..+.+.-+..|+..+.+|..+..++ +|..|+
T Consensus 373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~l--kelvT~l~lsnn~isfv~~~l~~l~--------kLt~L~ 441 (565)
T KOG0472|consen 373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVEL--KELVTDLVLSNNKISFVPLELSQLQ--------KLTFLD 441 (565)
T ss_pred ccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHH--HHHHHHHHhhcCccccchHHHHhhh--------cceeee
Confidence 88888875544444 778888888887 677666655 4444433344444455555555555 888899
Q ss_pred CCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCC
Q 047519 501 MRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580 (892)
Q Consensus 501 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 580 (892)
+++|.+. .+|..++.+..|+.|+++.|++. .+|..+..+..++.+-.++|++....|..+.+|.+|.+|||.+|.+.
T Consensus 442 L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq- 518 (565)
T KOG0472|consen 442 LSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ- 518 (565)
T ss_pred cccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-
Confidence 9988776 67888888889999999999988 78888888888888888889998877777999999999999999985
Q ss_pred CCCCCCCCcCCCCccEEEcCCCCCc
Q 047519 581 PIGDNTTIVPFPRFRIIDLSHNEFT 605 (892)
Q Consensus 581 ~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (892)
.+|..+ +++++|++|++++|.|.
T Consensus 519 ~IPp~L--gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 QIPPIL--GNMTNLRHLELDGNPFR 541 (565)
T ss_pred hCChhh--ccccceeEEEecCCccC
Confidence 556666 89999999999999997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=330.42 Aligned_cols=469 Identities=23% Similarity=0.247 Sum_probs=242.1
Q ss_pred ccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhccc
Q 047519 86 LFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTF 165 (892)
Q Consensus 86 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~ 165 (892)
+..-.++..|+++.|.+-..+ -+++.+..+|+.||+|+|.+. ..|..|. .+.+|+.|+++.|. ...+|..+.
T Consensus 17 i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it--~l~~L~~ln~s~n~-i~~vp~s~~--- 88 (1081)
T KOG0618|consen 17 ILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQIT--LLSHLRQLNLSRNY-IRSVPSSCS--- 88 (1081)
T ss_pred hccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhh--hHHHHhhcccchhh-HhhCchhhh---
Confidence 333344555666655554421 133444444666666655543 4555555 55555555554444 333343333
Q ss_pred CCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEccc
Q 047519 166 LHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICR 245 (892)
Q Consensus 166 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~ 245 (892)
++ .+|+++.|..| .+ ...| ..+..+++|++|+++.
T Consensus 89 -~~-------------------------~~l~~lnL~~n--~l-~~lP----------------~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 89 -NM-------------------------RNLQYLNLKNN--RL-QSLP----------------ASISELKNLQYLDLSF 123 (1081)
T ss_pred -hh-------------------------hcchhheeccc--hh-hcCc----------------hhHHhhhcccccccch
Confidence 33 45555555554 22 3344 5555666666666666
Q ss_pred CCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeec
Q 047519 246 NRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAV 325 (892)
Q Consensus 246 n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~ 325 (892)
|.+. .+|. .+..+..++.+..++|..... ++... ++.+++. .|.+.+.+
T Consensus 124 N~f~----------------------~~Pl-~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~---~n~l~~~~ 172 (1081)
T KOG0618|consen 124 NHFG----------------------PIPL-VIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLR---LNVLGGSF 172 (1081)
T ss_pred hccC----------------------CCch-hHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhh---hhhcccch
Confidence 6443 2233 444444445555555411111 11111 4455555 55555555
Q ss_pred c-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCc
Q 047519 326 K-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404 (892)
Q Consensus 326 p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 404 (892)
+ .+ ..++. .|+|.+|.+. -..+..+.+|+.|....|++... . -..++|+.|+.++|.+.
T Consensus 173 ~~~i-------~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-~----~~g~~l~~L~a~~n~l~--- 232 (1081)
T KOG0618|consen 173 LIDI-------YNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-E----ISGPSLTALYADHNPLT--- 232 (1081)
T ss_pred hcch-------hhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE-E----ecCcchheeeeccCcce---
Confidence 4 34 44444 5666666665 23455666777777777776522 1 23467777777777432
Q ss_pred cccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCC
Q 047519 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTN 484 (892)
Q Consensus 405 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 484 (892)
.........+|++++++.|+++.+|+|++.+.+|+.+++.+|.++ .+|..+... .+|+.|.+..|.+..++|. ...
T Consensus 233 ~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~--~~L~~l~~~~nel~yip~~-le~ 308 (1081)
T KOG0618|consen 233 TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRI--TSLVSLSAAYNELEYIPPF-LEG 308 (1081)
T ss_pred eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhh--hhHHHHHhhhhhhhhCCCc-ccc
Confidence 111112456788888888888888888888888888888888885 667766666 7777777777776655432 122
Q ss_pred CCeeecCCCCcccEEECCCCccCccccccccCCCC-CCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc
Q 047519 485 MTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN-LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE 563 (892)
Q Consensus 485 l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 563 (892)
++ .|++|+|..|++....+..+..... |..|+.+.|++. ..| ..+ =.
T Consensus 309 ~~--------sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp-~~~----------------------e~ 356 (1081)
T KOG0618|consen 309 LK--------SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLP-SYE----------------------EN 356 (1081)
T ss_pred cc--------eeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccc-ccc----------------------ch
Confidence 22 4555555555554322222222222 444444444444 222 110 01
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccce
Q 047519 564 ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYES 643 (892)
Q Consensus 564 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 643 (892)
.++.|+.|++.+|.++...-+.+ .++..|++|+|++|++. .+|+.++.+
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNrL~-~fpas~~~k---------------------------- 405 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNRLN-SFPASKLRK---------------------------- 405 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhh--ccccceeeeeecccccc-cCCHHHHhc----------------------------
Confidence 23445555555555554443333 45555555566655554 445443322
Q ss_pred EEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCC
Q 047519 644 IILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG 723 (892)
Q Consensus 644 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 723 (892)
+..|+.|+||+|+++ .+|..+.++..|++|. ..+|+|. ..| .+.++++|+.+|+|.|+|+.
T Consensus 406 ---------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~-ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 406 ---------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLR-AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ---------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHh-hcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 334445555555555 4555555555555554 5555555 444 45555555555555555543
Q ss_pred CCccccCCCCCCCEEECCCCc
Q 047519 724 HIPTQLTSLKYLSVLNLSYNQ 744 (892)
Q Consensus 724 ~ip~~l~~l~~L~~L~ls~N~ 744 (892)
..-..-..-++|++||+++|.
T Consensus 467 ~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 467 VTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhCCCcccceeeccCCc
Confidence 221111112455555555554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-33 Score=299.41 Aligned_cols=343 Identities=26% Similarity=0.324 Sum_probs=247.2
Q ss_pred CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519 336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL 415 (892)
Q Consensus 336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 415 (892)
..+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+. ..++.++.|+.+++.+|++...|..+..+.+..|
T Consensus 29 ~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhh-hhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 44555555555555555 67888888888888888888876 344 5677888888888888877777766666688888
Q ss_pred cEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCc
Q 047519 416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLT 495 (892)
Q Consensus 416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~ 495 (892)
+.|+|+.|+++++|..+..-+++-.|+||+|+|.......+.++ +.|-.||||+|++...+|. ...+. .
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL--tDLLfLDLS~NrLe~LPPQ-~RRL~--------~ 174 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL--TDLLFLDLSNNRLEMLPPQ-IRRLS--------M 174 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhh--HhHhhhccccchhhhcCHH-HHHHh--------h
Confidence 88888888888888888888888889999998885444556666 8888889999888876652 23333 6
Q ss_pred ccEEECCCCccCccccccccCCCCCCEEEccCCCCC-CCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 496 HKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLE-GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 496 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
|++|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+.. +|+.+-++++|+.|+|+
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccC
Confidence 778888888776544445566778888888886543 4678889999999999999999876 78889999999999999
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (892)
+|+++..-. ....+.+|++|++|.|+++ .+|.. ...
T Consensus 254 ~N~iteL~~---~~~~W~~lEtLNlSrNQLt-~LP~a-vcK--------------------------------------- 289 (1255)
T KOG0444|consen 254 GNKITELNM---TEGEWENLETLNLSRNQLT-VLPDA-VCK--------------------------------------- 289 (1255)
T ss_pred cCceeeeec---cHHHHhhhhhhccccchhc-cchHH-Hhh---------------------------------------
Confidence 999865432 2256788999999999998 77755 333
Q ss_pred HHHhhhhheeeecCCCcCC-CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519 655 IERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK 733 (892)
Q Consensus 655 ~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 733 (892)
++.|+.|.+.+|+++ ..||..+|.|..|+++. .++|++. ..|+.+..+..|+.|.|++|++. ..|+.+.-++
T Consensus 290 ----L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~-aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 290 ----LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH-AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred ----hHHHHHHHhccCcccccCCccchhhhhhhHHHH-hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence 444555555555554 24566666666666665 6666555 56666666666666666666665 5566666666
Q ss_pred CCCEEECCCCc
Q 047519 734 YLSVLNLSYNQ 744 (892)
Q Consensus 734 ~L~~L~ls~N~ 744 (892)
.|++||+..|+
T Consensus 363 ~l~vLDlreNp 373 (1255)
T KOG0444|consen 363 DLKVLDLRENP 373 (1255)
T ss_pred CcceeeccCCc
Confidence 66666666654
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-33 Score=313.92 Aligned_cols=403 Identities=22% Similarity=0.267 Sum_probs=291.3
Q ss_pred cccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCc
Q 047519 230 KDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTV 309 (892)
Q Consensus 230 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 309 (892)
....++.+|++|.|.+|. ...+|. .+..+.+|+.|+++.|.+. .+|..+..++.++
T Consensus 85 ~s~~~~~~l~~lnL~~n~----------------------l~~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~ 140 (1081)
T KOG0618|consen 85 SSCSNMRNLQYLNLKNNR----------------------LQSLPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEE 140 (1081)
T ss_pred hhhhhhhcchhheeccch----------------------hhcCch-hHHhhhcccccccchhccC-CCchhHHhhhHHH
Confidence 445556666666666553 345666 8888889999999998886 6777788888888
Q ss_pred EEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCC
Q 047519 310 VLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKN 389 (892)
Q Consensus 310 ~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 389 (892)
.+..+ +|.....+ +... ++.+++..|.+.+.++.++..++. .|+|.+|.+. . ..+..+.+
T Consensus 141 ~~~~s---~N~~~~~l----------g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~ 200 (1081)
T KOG0618|consen 141 ELAAS---NNEKIQRL----------GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLAN 200 (1081)
T ss_pred HHhhh---cchhhhhh----------cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccc
Confidence 88888 77222221 2222 788888888888888888877777 7899999886 3 34677888
Q ss_pred CCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEc
Q 047519 390 LKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDL 469 (892)
Q Consensus 390 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L 469 (892)
|+.|....|++.... ..-++|+.|+.+.|.++.+-. -..-.+|++++++.|+++ .+|+|+..+ .+|+.++.
T Consensus 201 l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l~-~lp~wi~~~--~nle~l~~ 271 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNLS-NLPEWIGAC--ANLEALNA 271 (1081)
T ss_pred hhhhhhhhcccceEE-----ecCcchheeeeccCcceeecc-ccccccceeeecchhhhh-cchHHHHhc--ccceEecc
Confidence 888888888432111 135778888888887773321 122356788888888887 455777776 77777666
Q ss_pred cCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEc
Q 047519 470 SNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDV 549 (892)
Q Consensus 470 s~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 549 (892)
.+|+++ .+|..+....+|+.|.+..|.+. -+|......+.|++|||
T Consensus 272 n~N~l~---------------------------------~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 272 NHNRLV---------------------------------ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cchhHH---------------------------------hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 666653 34455556667777888888877 56666777888888888
Q ss_pred cCCCCCCCcchhccCCCC-CCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCcc
Q 047519 550 GNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVE 628 (892)
Q Consensus 550 ~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~ 628 (892)
..|+|....+..+..+.. |+.|+.+.|++.... ...-..++.|+.|.+.+|.++...-..+
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p~l---------------- 379 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLTDSCFPVL---------------- 379 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCcccccchhhh----------------
Confidence 888887644433444433 777888888774332 1222456778999999999985432111
Q ss_pred ccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCC
Q 047519 629 VDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNL 708 (892)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l 708 (892)
...+.|+.|+|++|+|.......+.++..|+.|+ ||+|+++ .+|.++.++
T Consensus 380 ----------------------------~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~-LSGNkL~-~Lp~tva~~ 429 (1081)
T KOG0618|consen 380 ----------------------------VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN-LSGNKLT-TLPDTVANL 429 (1081)
T ss_pred ----------------------------ccccceeeeeecccccccCCHHHHhchHHhHHHh-cccchhh-hhhHHHHhh
Confidence 1267899999999999944445678999999999 9999999 889999999
Q ss_pred CCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCccc-CCCCCCCCcccCCccCCCCCC
Q 047519 709 TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP-IPQGSQFNTFRNDSYVGNSGL 769 (892)
Q Consensus 709 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~-iP~~~~~~~~~~~~~~gN~~l 769 (892)
..|++|...+|++. ..| .+..++.|+.+|+|.|+|+-. +|......+++..++.||.++
T Consensus 430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 99999999999998 778 899999999999999999753 444434467888889999864
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.4e-32 Score=290.30 Aligned_cols=370 Identities=24% Similarity=0.290 Sum_probs=310.6
Q ss_pred CCCCcCEEEccCCcCC-cCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519 337 GRRHYAEPHFSSNQLS-GSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL 415 (892)
Q Consensus 337 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 415 (892)
-++-.+-+|+++|.++ +.+|.....+++++.|.|....+. .+| +.++.+.+|++|.+++| .+.........+|.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN--~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHN--QLISVHGELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhh--hhHhhhhhhccchhh
Confidence 3455677899999998 579999999999999999999997 788 88999999999999999 444444444478999
Q ss_pred cEEEccCCCCC--CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCC
Q 047519 416 FGLGLSACNIS--EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN 493 (892)
Q Consensus 416 ~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~ 493 (892)
+.+.+..|++. .+|..+..+..|+.||||+|++. ..|..+... .++-.|+||+|+|..++...+.+++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A--Kn~iVLNLS~N~IetIPn~lfinLt------- 150 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA--KNSIVLNLSYNNIETIPNSLFINLT------- 150 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh--cCcEEEEcccCccccCCchHHHhhH-------
Confidence 99999999998 79999999999999999999998 788888877 8999999999999988777777777
Q ss_pred CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCC-CCcchhccCCCCCCEEE
Q 047519 494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIN-DNFPNWLEILPELQVLI 572 (892)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~ 572 (892)
.|-.|||++|++. .+|..+..+..|++|.|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..++
T Consensus 151 -DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 151 -DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred -hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 7788999999987 56667788889999999999876433334556778888999887543 45788888999999999
Q ss_pred ccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccch
Q 047519 573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGID 652 (892)
Q Consensus 573 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (892)
++.|.+. .+|+.+ ..+++|+.|+||+|+|+.. ...
T Consensus 229 lS~N~Lp-~vPecl--y~l~~LrrLNLS~N~iteL-~~~----------------------------------------- 263 (1255)
T KOG0444|consen 229 LSENNLP-IVPECL--YKLRNLRRLNLSGNKITEL-NMT----------------------------------------- 263 (1255)
T ss_pred ccccCCC-cchHHH--hhhhhhheeccCcCceeee-ecc-----------------------------------------
Confidence 9999884 456655 7888999999999998732 111
Q ss_pred hhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCC-CCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519 653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT-GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS 731 (892)
Q Consensus 653 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 731 (892)
.....+|++|+||.|+++ ..|..+..|+.|+.|. +.+|+++ .-||+.++.+.+|+++..++|.+. ..|..+..
T Consensus 264 ---~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy-~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR 337 (1255)
T KOG0444|consen 264 ---EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY-ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR 337 (1255)
T ss_pred ---HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH-hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh
Confidence 011567899999999999 9999999999999998 9999998 458999999999999999999998 89999999
Q ss_pred CCCCCEEECCCCcCcccCCCCCCCC-cccCCccCCCCCCCCCCC
Q 047519 732 LKYLSVLNLSYNQFEGPIPQGSQFN-TFRNDSYVGNSGLCGFPL 774 (892)
Q Consensus 732 l~~L~~L~ls~N~l~g~iP~~~~~~-~~~~~~~~gN~~lc~~~~ 774 (892)
+..|+.|.|+.|++- .+|.+-++. .+...+...||.|.-+|-
T Consensus 338 C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 999999999999997 677765443 456677888998887664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.4e-22 Score=249.00 Aligned_cols=336 Identities=19% Similarity=0.184 Sum_probs=242.8
Q ss_pred ccccCCCCCcEEecCcccccc------ceeecc-chhhhhhccCCC-CCcCEEEccCCcCCcCCCccccCCCCCCEEECc
Q 047519 300 NWKSTLQSTVVLSTTEAEYMA------ITKAVK-EAIWLQVFVRGR-RHYAEPHFSSNQLSGSIPSSVYELENLILLRLP 371 (892)
Q Consensus 300 ~~l~~l~~L~~L~l~~~~~n~------l~~~~p-~l~~l~l~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 371 (892)
..|..+++|+.|.+. .+. +...+| .+ ..+ .+|+.|++.++.+. .+|..| ...+|++|++.
T Consensus 552 ~aF~~m~~L~~L~~~---~~~~~~~~~~~~~lp~~~-------~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~ 619 (1153)
T PLN03210 552 NAFKGMRNLLFLKFY---TKKWDQKKEVRWHLPEGF-------DYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQ 619 (1153)
T ss_pred HHHhcCccccEEEEe---cccccccccceeecCcch-------hhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECc
Confidence 456778888888886 432 233445 44 444 46888888888776 667666 56888889998
Q ss_pred CCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCC-CCCcchhhhCCCCccEEEccCCCCCC
Q 047519 372 SNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACN-ISEFPDILRTLHQLQWFNLSKNRIHG 450 (892)
Q Consensus 372 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~Ls~n~l~~ 450 (892)
+|.+. .++ ..+..+++|+.|+++++ .....+|....+++|+.|++++|. +..+|..++.+++|+.|++++|...+
T Consensus 620 ~s~l~-~L~-~~~~~l~~Lk~L~Ls~~--~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 620 GSKLE-KLW-DGVHSLTGLRNIDLRGS--KNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred Ccccc-ccc-cccccCCCCCEEECCCC--CCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence 88886 455 45678888899998887 545666655578888888888875 45888888888889999998876555
Q ss_pred CCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCC
Q 047519 451 RISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRL 530 (892)
Q Consensus 451 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 530 (892)
.+|..+ .+ ++|+.|++++|......|.... +|+.|++++|.+. .+|..+ .+++|++|.+.++..
T Consensus 696 ~Lp~~i-~l--~sL~~L~Lsgc~~L~~~p~~~~-----------nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 696 ILPTGI-NL--KSLYRLNLSGCSRLKSFPDIST-----------NISWLDLDETAIE-EFPSNL-RLENLDELILCEMKS 759 (1153)
T ss_pred ccCCcC-CC--CCCCEEeCCCCCCccccccccC-----------CcCeeecCCCccc-cccccc-cccccccccccccch
Confidence 666654 34 8888888888865544443222 6677788888775 455544 467788888876432
Q ss_pred C-------CCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCC
Q 047519 531 E-------GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE 603 (892)
Q Consensus 531 ~-------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 603 (892)
. ...+.....+++|+.|++++|.....+|.+++++++|+.|++++|...+.+|... .+++|+.|++++|.
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCS 836 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCC
Confidence 1 1122223345678888888887777788888888888888888876666666653 57788888888876
Q ss_pred CcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCc
Q 047519 604 FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL 683 (892)
Q Consensus 604 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l 683 (892)
....+|.. .++|+.|+|++|.++ .+|..+..+
T Consensus 837 ~L~~~p~~-----------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l 868 (1153)
T PLN03210 837 RLRTFPDI-----------------------------------------------STNISDLNLSRTGIE-EVPWWIEKF 868 (1153)
T ss_pred cccccccc-----------------------------------------------ccccCEeECCCCCCc-cChHHHhcC
Confidence 54444421 356788999999998 788889999
Q ss_pred cccccccccCC-CCCCCCcchhccCCCCCCeeeCCCCc
Q 047519 684 NLLKGLNNISH-NNLTGDIPSLLRNLTEVESLDLSSNM 720 (892)
Q Consensus 684 ~~L~~L~~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~ 720 (892)
++|+.|+ +++ |++. .+|..+..+++|+.|++++|.
T Consensus 869 ~~L~~L~-L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 869 SNLSFLD-MNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCEEE-CCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 9999998 988 4555 678788889999999998885
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.6e-21 Score=241.66 Aligned_cols=337 Identities=15% Similarity=0.067 Sum_probs=231.1
Q ss_pred cccccCCCCCEEEcccCCC------CCcCCccccCCC-Ccceec--ccceeecChhhhcCCCCCcEEEccCCCCCcCCCc
Q 047519 230 KDLGEAKKILGMEICRNRT------CGKTMDVGLLFE-QDDTLG--QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPIN 300 (892)
Q Consensus 230 ~~l~~l~~L~~L~L~~n~~------~~~~~~~l~~l~-~L~~L~--~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~ 300 (892)
..+.++++|+.|.+..+.. ...+|..+..++ +|+.|. ..-...+|. .+ ...+|++|++.+|.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~-~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS-NF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC-cC-CccCCcEEECcCcccc-cccc
Confidence 4567788888888866532 234566666653 477776 333455665 44 4678888888888766 4666
Q ss_pred cccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccC
Q 047519 301 WKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTE 380 (892)
Q Consensus 301 ~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 380 (892)
.+..+++|+.|+++ ++...+.+|.+ ..+++|++|++++|.....+|..+.++++|+.|++++|.....+|
T Consensus 629 ~~~~l~~Lk~L~Ls---~~~~l~~ip~l-------s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 629 GVHSLTGLRNIDLR---GSKNLKEIPDL-------SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred ccccCCCCCEEECC---CCCCcCcCCcc-------ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 77788888888888 77666677777 778888888888876666788888888888888888875444666
Q ss_pred hhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCC-------CCCc
Q 047519 381 LYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH-------GRIS 453 (892)
Q Consensus 381 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-------~~~~ 453 (892)
..+ ++++|+.|++++| .....+|. ..++|+.|++++|.++.+|..+ .+++|++|++.++... ...+
T Consensus 699 -~~i-~l~sL~~L~Lsgc--~~L~~~p~--~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 699 -TGI-NLKSLYRLNLSGC--SRLKSFPD--ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred -CcC-CCCCCCEEeCCCC--CCcccccc--ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccch
Confidence 222 6788888888887 44444443 2467888888888888887654 5677777777764321 1111
Q ss_pred hhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCC
Q 047519 454 SWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGP 533 (892)
Q Consensus 454 ~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 533 (892)
...... ++|+.|++++|...+.+|..+.++. +|+.|++++|...+.+|..+ .+++|+.|++++|.....
T Consensus 772 ~~~~~~--~sL~~L~Ls~n~~l~~lP~si~~L~--------~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 772 LMTMLS--PSLTRLFLSDIPSLVELPSSIQNLH--------KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred hhhhcc--ccchheeCCCCCCccccChhhhCCC--------CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 111222 6788888888876666666665555 77777777775555666655 577888888888765545
Q ss_pred CCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCC
Q 047519 534 LPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE 603 (892)
Q Consensus 534 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 603 (892)
+|.. .++|+.|+|++|.++. +|.++..+++|+.|++++|.-...+|... ..++.|+.+++++|.
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCG 904 (1153)
T ss_pred cccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCc
Confidence 5543 3567888888888865 67777888888888888755444555554 667778888887774
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.5e-21 Score=224.97 Aligned_cols=267 Identities=24% Similarity=0.302 Sum_probs=151.0
Q ss_pred CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEE
Q 047519 339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGL 418 (892)
Q Consensus 339 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 418 (892)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+| . ..++|++|++++|++. . +|. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP-~---lp~~Lk~LdLs~N~Lt--s-LP~--lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP-A---LPPELRTLEVSGNQLT--S-LPV--LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCC-C---CCCCCcEEEecCCccC--c-ccC--ccccccee
Confidence 33556777777777 5666654 36777888887777 344 1 2466777777777332 1 221 13456666
Q ss_pred EccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccE
Q 047519 419 GLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKV 498 (892)
Q Consensus 419 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~ 498 (892)
++++|.++.+|..+ ++|+.|++++|+++. +|.. . ++|+.|++++|++++++. .
T Consensus 268 ~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~~---p--~~L~~LdLS~N~L~~Lp~-l----------------- 320 (788)
T PRK15387 268 SIFSNPLTHLPALP---SGLCKLWIFGNQLTS-LPVL---P--PGLQELSVSDNQLASLPA-L----------------- 320 (788)
T ss_pred eccCCchhhhhhch---hhcCEEECcCCcccc-cccc---c--cccceeECCCCccccCCC-C-----------------
Confidence 66666666555422 345566666666652 3321 1 455555655555554321 1
Q ss_pred EECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcC
Q 047519 499 LDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578 (892)
Q Consensus 499 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 578 (892)
..+|+.|++++|++++ +|.. ..+|++|+|++|+|++ +|.. .++|+.|++++|++
T Consensus 321 ------------------p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L 374 (788)
T PRK15387 321 ------------------PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL 374 (788)
T ss_pred ------------------cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccc
Confidence 1134445555555542 3321 1345566666666654 3321 23555666666666
Q ss_pred CCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHh
Q 047519 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERI 658 (892)
Q Consensus 579 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (892)
++ +|.. ..+|+.|++++|+|++ +|..
T Consensus 375 ~~-LP~l-----~~~L~~LdLs~N~Lt~-LP~l----------------------------------------------- 400 (788)
T PRK15387 375 TS-LPAL-----PSGLKELIVSGNRLTS-LPVL----------------------------------------------- 400 (788)
T ss_pred cc-Cccc-----ccccceEEecCCcccC-CCCc-----------------------------------------------
Confidence 43 3321 2356677777777663 3321
Q ss_pred hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS 731 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 731 (892)
.+.|+.|++++|+|+ .+|... .+|+.|+ +++|+|+ .+|..+.++++|+.|+|++|+|++.+|..+..
T Consensus 401 ~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~-Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 401 PSELKELMVSGNRLT-SLPMLP---SGLLSLS-VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccCCCEEEccCCcCC-CCCcch---hhhhhhh-hccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 234666777777776 355432 3466676 7777777 67777777777777777777777777666533
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=1.9e-21 Score=226.08 Aligned_cols=264 Identities=23% Similarity=0.252 Sum_probs=182.0
Q ss_pred CCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEE
Q 047519 388 KNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYL 467 (892)
Q Consensus 388 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L 467 (892)
..-..|++++| .+. .+|... .++|+.|++.+|+++.+|.. +++|++|++++|+++. +|.. . ++|+.|
T Consensus 201 ~~~~~LdLs~~--~Lt-sLP~~l-~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p--~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGES--GLT-TLPDCL-PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPVL---P--PGLLEL 267 (788)
T ss_pred CCCcEEEcCCC--CCC-cCCcch-hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccCc---c--ccccee
Confidence 34567788877 333 344433 24677888888888777752 4677888888887773 4432 1 677777
Q ss_pred EccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 047519 468 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVL 547 (892)
Q Consensus 468 ~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 547 (892)
++++|.++.++. .+. .|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|
T Consensus 268 ~Ls~N~L~~Lp~-lp~-----------~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L 327 (788)
T PRK15387 268 SIFSNPLTHLPA-LPS-----------GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKL 327 (788)
T ss_pred eccCCchhhhhh-chh-----------hcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---ccccccc
Confidence 777777765432 111 56667777777763 343 23567777777777774 4432 2356677
Q ss_pred EccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCc
Q 047519 548 DVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSV 627 (892)
Q Consensus 548 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~ 627 (892)
++++|++++ +|.. ..+|+.|+|++|++++ +|.. .++|+.|++++|++++ +|..
T Consensus 328 ~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l---------------- 380 (788)
T PRK15387 328 WAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL---------------- 380 (788)
T ss_pred ccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc----------------
Confidence 777777765 4431 2467777777777764 3332 2456677777777763 4421
Q ss_pred cccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccC
Q 047519 628 EVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRN 707 (892)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~ 707 (892)
+..|+.|++++|+|+ .+|... ++|+.|+ +++|+|+ .+|..+
T Consensus 381 -------------------------------~~~L~~LdLs~N~Lt-~LP~l~---s~L~~Ld-LS~N~Ls-sIP~l~-- 421 (788)
T PRK15387 381 -------------------------------PSGLKELIVSGNRLT-SLPVLP---SELKELM-VSGNRLT-SLPMLP-- 421 (788)
T ss_pred -------------------------------ccccceEEecCCccc-CCCCcc---cCCCEEE-ccCCcCC-CCCcch--
Confidence 346889999999999 466543 5788898 9999999 477643
Q ss_pred CCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC
Q 047519 708 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752 (892)
Q Consensus 708 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 752 (892)
.+|+.|++++|+|+ .+|..+..+++|+.|+|++|+|+|.+|..
T Consensus 422 -~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 422 -SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred -hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 46889999999998 78999999999999999999999988863
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-23 Score=212.65 Aligned_cols=398 Identities=17% Similarity=0.104 Sum_probs=199.6
Q ss_pred CCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccC-CcCCcCCCcccc
Q 047519 283 KRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSS-NQLSGSIPSSVY 360 (892)
Q Consensus 283 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~-n~l~~~~p~~l~ 360 (892)
.-..++|..|+++...|.+|+.+++|+.|+|+ +|.|+...| .| .++++|.+|-+.+ |+|+......|+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS---~N~Is~I~p~AF-------~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS---KNNISFIAPDAF-------KGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceeccc---ccchhhcChHhh-------hhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 34566677777766556666677777777777 666666666 66 6666665555544 666654445566
Q ss_pred CCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCC---Ccc-------
Q 047519 361 ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNIS---EFP------- 429 (892)
Q Consensus 361 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~---~lp------- 429 (892)
++..|+.|.+.-|++... +.+.|..+++|..|.+.+| .+.......+ .+..++.+.+..|.+. .+|
T Consensus 138 gL~slqrLllNan~i~Ci-r~~al~dL~~l~lLslyDn--~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCI-RQDALRDLPSLSLLSLYDN--KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hHHHHHHHhcChhhhcch-hHHHHHHhhhcchhcccch--hhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 666666666666666633 3366666666666666666 2222222222 4555555555555422 111
Q ss_pred ---hhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCcc
Q 047519 430 ---DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNF 506 (892)
Q Consensus 430 ---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l 506 (892)
-.+++.....-..+.+.++....+..|.. .++.+ ..--.+.+..
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c----~~esl-----------------------------~s~~~~~d~~ 261 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLC----SLESL-----------------------------PSRLSSEDFP 261 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhh----hHHhH-----------------------------HHhhccccCc
Confidence 11222222222222222222111111110 01100 0000111111
Q ss_pred Ccccc-ccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCC
Q 047519 507 NGKIS-QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDN 585 (892)
Q Consensus 507 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 585 (892)
.+..| ..|..+++|+.|+|++|+++++-+.+|.+...+++|.|..|+|...-...|.++..|++|+|.+|+|+...|..
T Consensus 262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 11222 23555666666666666666555556666666666666666665544455556666666666666665555555
Q ss_pred CCCcCCCCccEEEcCCCCCcCcCCcchhhhhhh---------------hhcccCCCccccccCCCCCCCccceEEEEEcc
Q 047519 586 TTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKA---------------MMHGNNNSVEVDYMTPLNSSNYYESIILTIKG 650 (892)
Q Consensus 586 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~---------------l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (892)
+ ..+.+|..|+|-.|.+....--.|++.+-. +..+.++...+....- . ..+. .....
T Consensus 342 F--~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c---~-~~ee--~~~~~ 413 (498)
T KOG4237|consen 342 F--QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRC---G-GPEE--LGCLT 413 (498)
T ss_pred c--cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccccccc---C-Cccc--cCCCC
Confidence 4 555566666666665543322222222110 0111111110000000 0 0000 00000
Q ss_pred chhhHHHhhhhhee-eecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCcccc
Q 047519 651 IDIQIERILTIFMT-IDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQL 729 (892)
Q Consensus 651 ~~~~~~~~l~~L~~-LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 729 (892)
... .....+-+.+ ...|+..+. .+|..+- ..-.+|. +.+|.++ .+|.. .+.+| .+|+|+|+++..--..|
T Consensus 414 s~~-cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~tely-l~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf 484 (498)
T KOG4237|consen 414 SSP-CPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELY-LDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTF 484 (498)
T ss_pred CCC-CCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHh-cccchhc-ccCHH--HHhhh-hcccccCceehhhcccc
Confidence 000 0000122222 233444443 4444332 1344676 8899998 77876 66778 89999999987777889
Q ss_pred CCCCCCCEEECCCC
Q 047519 730 TSLKYLSVLNLSYN 743 (892)
Q Consensus 730 ~~l~~L~~L~ls~N 743 (892)
.++++|.+|-+|||
T Consensus 485 ~n~tql~tlilsyn 498 (498)
T KOG4237|consen 485 SNMTQLSTLILSYN 498 (498)
T ss_pred cchhhhheeEEecC
Confidence 99999999999987
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=8.6e-23 Score=208.19 Aligned_cols=416 Identities=19% Similarity=0.119 Sum_probs=258.9
Q ss_pred CCccccCCCCcceec-ccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCcccc-ccceeecc--c
Q 047519 252 TMDVGLLFEQDDTLG-QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEY-MAITKAVK--E 327 (892)
Q Consensus 252 ~~~~l~~l~~L~~L~-~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~-n~l~~~~p--~ 327 (892)
+|..+-.=+-+-.|+ |++ ..||+.+|..+++|+.|||+.|+++..-|++|..+.+|.+|-+. + |+|+ .+| .
T Consensus 61 VP~~LP~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly---g~NkI~-~l~k~~ 135 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY---GNNKIT-DLPKGA 135 (498)
T ss_pred CcccCCCcceEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh---cCCchh-hhhhhH
Confidence 444444333444555 554 45666699999999999999999999999999999999988887 6 7775 566 8
Q ss_pred hhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccc-
Q 047519 328 AIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL- 406 (892)
Q Consensus 328 l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~- 406 (892)
| +++..|+.|.+.-|++.-.....|..+++|..|.+.+|.+. .++...|..+..++.+.+..|++--.-..
T Consensus 136 F-------~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 136 F-------GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred h-------hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccc
Confidence 8 99999999999999999888899999999999999999998 66657899999999999998842111111
Q ss_pred ---------cCCC-CCCCccEEEccCCCCCCcch-hh-hCCCCccEEEccCCCCCCCCc-hhhhhhCCCcccEEEccCCC
Q 047519 407 ---------KVNS-SFPNLFGLGLSACNISEFPD-IL-RTLHQLQWFNLSKNRIHGRIS-SWMWDLGITALYYLDLSNNF 473 (892)
Q Consensus 407 ---------~~~~-~l~~L~~L~L~~n~l~~lp~-~l-~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~L~~L~Ls~n~ 473 (892)
+... .+....-..+.+.++..++. -+ ..+..+..=-.+.+...+.-| ..|..+ ++|++|++++|+
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L--~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL--PNLRKLNLSNNK 285 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc--ccceEeccCCCc
Confidence 1111 22222233334444443331 11 111122111122333333444 345666 888888888888
Q ss_pred CCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCC
Q 047519 474 LTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQ 553 (892)
Q Consensus 474 l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~ 553 (892)
++.+.+..|..+. .+++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|.
T Consensus 286 i~~i~~~aFe~~a--------~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 286 ITRIEDGAFEGAA--------ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchhhhhhhcchh--------hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 8877777776665 66777777777766555667777777777777777776667777777777777777666
Q ss_pred CCCC-cchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCc---CCcchhhhhhhhhcccCCCccc
Q 047519 554 INDN-FPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV---LPTGYLDNFKAMMHGNNNSVEV 629 (892)
Q Consensus 554 l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~~l~~l~~l~~~~~~~ 629 (892)
+... --.|++. .|+.+.-.|..|- .....++.++++++.+... -|++. + ....
T Consensus 358 ~~CnC~l~wl~~-------Wlr~~~~~~~~~C----q~p~~~~~~~~~dv~~~~~~c~~~ee~-~------~~~s----- 414 (498)
T KOG4237|consen 358 FNCNCRLAWLGE-------WLRKKSVVGNPRC----QSPGFVRQIPISDVAFGDFRCGGPEEL-G------CLTS----- 414 (498)
T ss_pred ccCccchHHHHH-------HHhhCCCCCCCCC----CCCchhccccchhccccccccCCcccc-C------CCCC-----
Confidence 5431 1112211 0111221122221 1223355566665554321 11110 0 0000
Q ss_pred cccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCC
Q 047519 630 DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLT 709 (892)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~ 709 (892)
...+....-....+-.+.++...-..+++...+++++.+|.++ .+|.+ .+.+| .++ +|+|+++..--..|.+++
T Consensus 415 -~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~d-ls~n~i~~Lsn~tf~n~t 488 (498)
T KOG4237|consen 415 -SPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLD-LSNNRISSLSNYTFSNMT 488 (498)
T ss_pred -CCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcc-cccCceehhhcccccchh
Confidence 0000000000000001111111111223455678999999999 88887 67788 787 999999977788999999
Q ss_pred CCCeeeCCCC
Q 047519 710 EVESLDLSSN 719 (892)
Q Consensus 710 ~L~~L~Ls~N 719 (892)
+|.+|-||+|
T Consensus 489 ql~tlilsyn 498 (498)
T KOG4237|consen 489 QLSTLILSYN 498 (498)
T ss_pred hhheeEEecC
Confidence 9999999987
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.5e-19 Score=212.02 Aligned_cols=246 Identities=22% Similarity=0.288 Sum_probs=143.6
Q ss_pred CCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEE
Q 047519 389 NLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLD 468 (892)
Q Consensus 389 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~ 468 (892)
+...|+++++ .+.. +|... .+.|+.|++++|+++.+|..+. ++|+.|++++|+++ .+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~--~Lts-LP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~----~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKIL--GLTT-IPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP----DTIQEME 247 (754)
T ss_pred CceEEEeCCC--CcCc-CCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh----ccccEEE
Confidence 4566777776 3222 33222 2467777777777777776543 46777777777776 4454432 4677777
Q ss_pred ccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEE
Q 047519 469 LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLD 548 (892)
Q Consensus 469 Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 548 (892)
+++|.+..+ |..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+
T Consensus 248 Ls~N~L~~L-P~~l~----------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~ 310 (754)
T PRK15370 248 LSINRITEL-PERLP----------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLN 310 (754)
T ss_pred CcCCccCcC-ChhHh----------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHH
Confidence 777776643 22221 15666677777666 3454443 36777777777766 3444332 3566677
Q ss_pred ccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCcc
Q 047519 549 VGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVE 628 (892)
Q Consensus 549 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~ 628 (892)
+++|+++. +|..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|+|+ .+|..+
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~L~-~LP~~l---------------- 365 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL----PPELQVLDVSKNQIT-VLPETL---------------- 365 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCcccc-CChhh----cCcccEEECCCCCCC-cCChhh----------------
Confidence 77776665 34333 2466667777776654 44332 256667777777665 344321
Q ss_pred ccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhc---
Q 047519 629 VDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLL--- 705 (892)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l--- 705 (892)
.+.|+.|+|++|+|+ .+|..+. ..|+.|+ +++|+|+ .+|..+
T Consensus 366 ------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld-Ls~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 366 ------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQ-ASRNNLV-RLPESLPHF 410 (754)
T ss_pred ------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHh-hccCCcc-cCchhHHHH
Confidence 235667777777777 4555543 2566776 7777776 444433
Q ss_pred -cCCCCCCeeeCCCCcCC
Q 047519 706 -RNLTEVESLDLSSNMLV 722 (892)
Q Consensus 706 -~~l~~L~~L~Ls~N~l~ 722 (892)
+.++.+..|+|.+|.++
T Consensus 411 ~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhcCCCccEEEeeCCCcc
Confidence 33466677777777765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.5e-19 Score=210.00 Aligned_cols=277 Identities=25% Similarity=0.315 Sum_probs=172.9
Q ss_pred CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEc
Q 047519 364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNL 443 (892)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 443 (892)
+...|+++++.++ .+| ..+ .++|+.|++++|++ .. +|... .++|++|++++|+++.+|..+. ++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP-~~I--p~~L~~L~Ls~N~L--ts-LP~~l-~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIP-ACI--PEQITTLILDNNEL--KS-LPENL-QGNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCC-ccc--ccCCcEEEecCCCC--Cc-CChhh-ccCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 4667888887777 455 222 24678888888843 32 33222 3578888888888887776553 46888888
Q ss_pred cCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEE
Q 047519 444 SKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNL 523 (892)
Q Consensus 444 s~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 523 (892)
++|.+. .+|..+. .+|+.|++++|+++.+ |..+. .+|+.|++++|++++ +|..+. ++|+.|
T Consensus 249 s~N~L~-~LP~~l~----s~L~~L~Ls~N~L~~L-P~~l~----------~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L 309 (754)
T PRK15370 249 SINRIT-ELPERLP----SALQSLDLFHNKISCL-PENLP----------EELRYLSVYDNSIRT-LPAHLP--SGITHL 309 (754)
T ss_pred cCCccC-cCChhHh----CCCCEEECcCCccCcc-ccccC----------CCCcEEECCCCcccc-Ccccch--hhHHHH
Confidence 888877 5565543 5688888888877754 32222 157777777777774 444332 367788
Q ss_pred EccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCC
Q 047519 524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE 603 (892)
Q Consensus 524 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 603 (892)
++++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+
T Consensus 310 ~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l----p~~L~~LdLs~N~ 378 (754)
T PRK15370 310 NVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL----PPTITTLDVSRNA 378 (754)
T ss_pred HhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh----cCCcCEEECCCCc
Confidence 888888873 45433 2578888888888776 565443 67888888888775 345433 2578888888888
Q ss_pred CcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhh----
Q 047519 604 FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV---- 679 (892)
Q Consensus 604 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~---- 679 (892)
++ .+|..+ ...|+.|++++|+|+ .+|..
T Consensus 379 Lt-~LP~~l----------------------------------------------~~sL~~LdLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 379 LT-NLPENL----------------------------------------------PAALQIMQASRNNLV-RLPESLPHF 410 (754)
T ss_pred CC-CCCHhH----------------------------------------------HHHHHHHhhccCCcc-cCchhHHHH
Confidence 77 445332 235667778888877 44443
Q ss_pred hcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC-CccccCCCCCCC
Q 047519 680 VGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH-IPTQLTSLKYLS 736 (892)
Q Consensus 680 ~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~ 736 (892)
.+.++.+..|+ +.+|.++. ..+.+|+.| ++.+...|. ++..+..++.++
T Consensus 411 ~~~~~~l~~L~-L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~ 460 (754)
T PRK15370 411 RGEGPQPTRII-VEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVR 460 (754)
T ss_pred hhcCCCccEEE-eeCCCccH------HHHHHHHHh-hhcccccCCccccccccccccc
Confidence 34456777787 88888772 233444444 344444433 333334334333
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.1e-18 Score=190.62 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=42.2
Q ss_pred hhhheeeecCCCcCCCCChhhhcC-----ccccccccccCCCCCC----CCcchhccCCCCCCeeeCCCCcCCCC----C
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGK-----LNLLKGLNNISHNNLT----GDIPSLLRNLTEVESLDLSSNMLVGH----I 725 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~-----l~~L~~L~~Ls~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----i 725 (892)
++.|+.|++++|.+++.....+.. .+.|+.|+ +++|.++ ..++..+..+++|+.+|+++|.++.. +
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~-l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS-LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE-ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 344555555555555422222221 24555665 6666554 12333444455666666666666533 2
Q ss_pred ccccCCC-CCCCEEECCCCcC
Q 047519 726 PTQLTSL-KYLSVLNLSYNQF 745 (892)
Q Consensus 726 p~~l~~l-~~L~~L~ls~N~l 745 (892)
...+... +.|+.+++.+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 299 AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhhcCCchhhcccCCCCC
Confidence 3333333 4566666665543
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=3.2e-18 Score=155.23 Aligned_cols=165 Identities=31% Similarity=0.545 Sum_probs=128.1
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCC
Q 047519 514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPR 593 (892)
Q Consensus 514 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 593 (892)
+..+..++.|.+++|+++ .+|..++.+.+|+.|++++|+|.. +|..++.+++|+.|++.-|++. ..|..+ +.+|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcccc--CCCch
Confidence 345678889999999999 677788999999999999999987 7888999999999999999883 566666 88899
Q ss_pred ccEEEcCCCCCcCc-CCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcC
Q 047519 594 FRIIDLSHNEFTGV-LPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKF 672 (892)
Q Consensus 594 L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 672 (892)
|++|||++|++... +|..||. ++.|+.|+|+.|.+
T Consensus 104 levldltynnl~e~~lpgnff~--------------------------------------------m~tlralyl~dndf 139 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFY--------------------------------------------MTTLRALYLGDNDF 139 (264)
T ss_pred hhhhhccccccccccCCcchhH--------------------------------------------HHHHHHHHhcCCCc
Confidence 99999999888642 4443322 56677777777777
Q ss_pred CCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519 673 QGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS 731 (892)
Q Consensus 673 ~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 731 (892)
. .+|..++++++|+.|. +..|.+- ..|.+++.++.|+.|.+.+|+++ .+|..+++
T Consensus 140 e-~lp~dvg~lt~lqil~-lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 140 E-ILPPDVGKLTNLQILS-LRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred c-cCChhhhhhcceeEEe-eccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 7 7777777777777777 7777777 67777777777777777777777 56655554
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=8e-18 Score=183.89 Aligned_cols=284 Identities=23% Similarity=0.238 Sum_probs=157.3
Q ss_pred EEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCc--cccCCC-CCCCccEEEccCCCCCC-------cchhhhCCC
Q 047519 367 LLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST--KLKVNS-SFPNLFGLGLSACNISE-------FPDILRTLH 436 (892)
Q Consensus 367 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-~l~~L~~L~L~~n~l~~-------lp~~l~~l~ 436 (892)
.|+|..+.+++.--...+..+.+|++|+++++.+...+ .++... ..+++++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 45666666653222244556666777777777321111 011111 34445555555554431 123344455
Q ss_pred CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCc----cccc
Q 047519 437 QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG----KISQ 512 (892)
Q Consensus 437 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~----~~~~ 512 (892)
+|+.|++++|.+.+..+..+..+ .. . ++|++|++++|++.+ .+..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l--~~----------------------------~-~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESL--LR----------------------------S-SSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHH--hc----------------------------c-CcccEEEeeCCccchHHHHHHHH
Confidence 55555555555544333333333 22 0 135555555555442 2222
Q ss_pred cccCC-CCCCEEEccCCCCCCC----CCccccCCCCCcEEEccCCCCCCC----cchhccCCCCCCEEEccCCcCCCCCC
Q 047519 513 KFVNS-CNLTNLNLNGNRLEGP----LPLSLVNCHHLEVLDVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIG 583 (892)
Q Consensus 513 ~~~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~ 583 (892)
.+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+...
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 34444 6777777777777632 233455666777777777777642 23334455678888888877653321
Q ss_pred CCC--CCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhh
Q 047519 584 DNT--TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTI 661 (892)
Q Consensus 584 ~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 661 (892)
..+ .+..+++|++|++++|.+++.....+...+ ....+.
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~---------------------------------------~~~~~~ 251 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASAL---------------------------------------LSPNIS 251 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH---------------------------------------hccCCC
Confidence 110 124567888888888887742221111100 001357
Q ss_pred heeeecCCCcCCC----CChhhhcCccccccccccCCCCCCCC----cchhccCC-CCCCeeeCCCCcC
Q 047519 662 FMTIDLSSNKFQG----GIPEVVGKLNLLKGLNNISHNNLTGD----IPSLLRNL-TEVESLDLSSNML 721 (892)
Q Consensus 662 L~~LdLs~N~l~~----~~p~~~~~l~~L~~L~~Ls~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l 721 (892)
|+.|++++|.++. .+...+..+++|+.++ +++|.++.. +...+... +.|++||+.+|.+
T Consensus 252 L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~-l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELD-LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE-CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 8888888888862 3445566678888898 999999855 44455555 6888999888864
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=4.2e-15 Score=174.40 Aligned_cols=118 Identities=35% Similarity=0.606 Sum_probs=106.6
Q ss_pred hheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEEC
Q 047519 661 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 740 (892)
Q Consensus 661 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l 740 (892)
.++.|+|++|.++|.+|..++.+++|+.|+ |++|+++|.+|..++++++|+.|||++|+++|.+|..+..+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~-Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSIN-LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEE-CCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 478899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCcCcccCCCCC--CCCcccCCccCCCCCCCCCCCCCCCC
Q 047519 741 SYNQFEGPIPQGS--QFNTFRNDSYVGNSGLCGFPLLESCN 779 (892)
Q Consensus 741 s~N~l~g~iP~~~--~~~~~~~~~~~gN~~lc~~~~~~~c~ 779 (892)
++|+++|.+|... .+.......+.+|+.+|+.|....|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999999753 12233456789999999987666674
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-16 Score=145.23 Aligned_cols=162 Identities=23% Similarity=0.438 Sum_probs=142.0
Q ss_pred ccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhh
Q 047519 538 LVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFK 617 (892)
Q Consensus 538 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~ 617 (892)
+-++..++.|.|++|+++. +|..+..+.+|+.|++++|++. ..|..+ ..++.|+.|+++-|++. .+|.+| +.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~i--ssl~klr~lnvgmnrl~-~lprgf-gs-- 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSI--SSLPKLRILNVGMNRLN-ILPRGF-GS-- 100 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhh--hhchhhhheecchhhhh-cCcccc-CC--
Confidence 4456788899999999987 6667899999999999999995 556666 88999999999999997 777664 22
Q ss_pred hhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCC-CChhhhcCccccccccccCCCC
Q 047519 618 AMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLNNISHNN 696 (892)
Q Consensus 618 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~~~~l~~L~~L~~Ls~N~ 696 (892)
++.|+.|||++|++.. ..|..|..++.|+.|. |++|.
T Consensus 101 -----------------------------------------~p~levldltynnl~e~~lpgnff~m~tlraly-l~dnd 138 (264)
T KOG0617|consen 101 -----------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALY-LGDND 138 (264)
T ss_pred -----------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHH-hcCCC
Confidence 6778999999999974 6889999999999998 99999
Q ss_pred CCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519 697 LTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 697 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 751 (892)
+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++-..|+
T Consensus 139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 99 88999999999999999999998 8999999999999999999999955554
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.8e-14 Score=169.19 Aligned_cols=152 Identities=26% Similarity=0.402 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCCCCc----cccceEecC--CCC--eEEEEECCCCCC
Q 047519 5 LCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCC----SWDGVTCDT--VAG--HVIGLDLSCSWL 76 (892)
Q Consensus 5 ~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c----~w~gv~C~~--~~~--~v~~L~L~~~~l 76 (892)
.+.++|..||+++|+.+..+ ...+|. +..|| .|.||.|.. ..+ +|+.|+|+++.+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~----------------~~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L 430 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLP----------------LRFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGL 430 (623)
T ss_pred ccCchHHHHHHHHHHhcCCc----------------ccCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCc
Confidence 45678999999999988543 124796 33443 799999952 222 699999999999
Q ss_pred CCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcc
Q 047519 77 HGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDC 156 (892)
Q Consensus 77 ~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~ 156 (892)
.|.++. .+..+++|++|+|++|.+.+. +|+.++.+++|++|+|++|.++|.+|..++ ++++|++|+|++|.+.+.
T Consensus 431 ~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 431 RGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNGNSLSGR 505 (623)
T ss_pred cccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcCCccccc
Confidence 999998 899999999999999999987 999999999999999999999999999999 999999999999888889
Q ss_pred hhhhhhcccCC-CCCCCEEecCCccCc
Q 047519 157 FQLDVKTTFLH-DDLEEEIYMTQLDGF 182 (892)
Q Consensus 157 ~p~~l~~~~~~-l~~L~~L~L~~~~~~ 182 (892)
+|..+. . ..++..+++.+|...
T Consensus 506 iP~~l~----~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 506 VPAALG----GRLLHRASFNFTDNAGL 528 (623)
T ss_pred CChHHh----hccccCceEEecCCccc
Confidence 998876 4 345667777766543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=4.2e-13 Score=144.01 Aligned_cols=102 Identities=27% Similarity=0.454 Sum_probs=57.7
Q ss_pred cEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCC
Q 047519 497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576 (892)
Q Consensus 497 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 576 (892)
...|++.|++. .+|..++.+..|+.+.+.+|.+. .+|..+.++..|++|||+.|+++. +|..+..|+ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecC
Confidence 44566666665 55555555666666666666665 556666666666666666666654 444444443 555555555
Q ss_pred cCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605 (892)
Q Consensus 577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (892)
+++ .+|+.+ +..+.|..||.+.|++.
T Consensus 154 kl~-~lp~~i--g~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 154 KLT-SLPEEI--GLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred ccc-cCCccc--ccchhHHHhhhhhhhhh
Confidence 552 334433 34445555555555554
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=4.1e-11 Score=134.88 Aligned_cols=199 Identities=31% Similarity=0.467 Sum_probs=150.8
Q ss_pred EEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC-CCcEEEccCCCCCCCcchhccCCCCCCEEEccCC
Q 047519 498 VLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH-HLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576 (892)
Q Consensus 498 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 576 (892)
.+++..|.+.... ..+...+.++.|++.+|.++ .+|......+ +|+.|++++|++.. +|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 3555555553222 22334467888888888888 5666666664 88899999998876 5566788889999999999
Q ss_pred cCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHH
Q 047519 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIE 656 (892)
Q Consensus 577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (892)
++....+. . ...+.|+.|++++|+++ .+|...
T Consensus 174 ~l~~l~~~-~--~~~~~L~~L~ls~N~i~-~l~~~~-------------------------------------------- 205 (394)
T COG4886 174 DLSDLPKL-L--SNLSNLNNLDLSGNKIS-DLPPEI-------------------------------------------- 205 (394)
T ss_pred hhhhhhhh-h--hhhhhhhheeccCCccc-cCchhh--------------------------------------------
Confidence 88644332 2 26788999999999988 455321
Q ss_pred HhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCC
Q 047519 657 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 736 (892)
Q Consensus 657 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 736 (892)
..+..|++|++++|.+. .++..+.++..+..+. +++|++. .+|..++.+++++.|++++|+++ .++. +..+.+|+
T Consensus 206 ~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~-l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~ 280 (394)
T COG4886 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE-LSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLR 280 (394)
T ss_pred hhhhhhhhhhhcCCcce-ecchhhhhcccccccc-cCCceee-eccchhccccccceecccccccc-cccc-ccccCccC
Confidence 01455888999999755 6778889999999998 9999998 55788899999999999999998 4544 88999999
Q ss_pred EEECCCCcCcccCCCC
Q 047519 737 VLNLSYNQFEGPIPQG 752 (892)
Q Consensus 737 ~L~ls~N~l~g~iP~~ 752 (892)
.|++++|.++...|..
T Consensus 281 ~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 281 ELDLSGNSLSNALPLI 296 (394)
T ss_pred EEeccCccccccchhh
Confidence 9999999999887764
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=2e-12 Score=138.85 Aligned_cols=103 Identities=26% Similarity=0.354 Sum_probs=48.6
Q ss_pred ccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccC
Q 047519 496 HKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS 575 (892)
Q Consensus 496 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 575 (892)
|+.+.+..|.+. .+|..++++..|++|+|+.|+++ .+|..+..|+ |+.|.+++|+++. +|..++.++.|..|+.+.
T Consensus 100 Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~-lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 100 LESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTS-LPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcccc-CCcccccchhHHHhhhhh
Confidence 344444444444 34444455555555555555554 3444444444 5555555555543 444444444555555555
Q ss_pred CcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519 576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605 (892)
Q Consensus 576 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (892)
|.+.. +|..+ +.+.+|+.|.+..|++.
T Consensus 176 nei~s-lpsql--~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 176 NEIQS-LPSQL--GYLTSLRDLNVRRNHLE 202 (722)
T ss_pred hhhhh-chHHh--hhHHHHHHHHHhhhhhh
Confidence 55432 22222 44445555555555544
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=2.1e-10 Score=129.04 Aligned_cols=179 Identities=29% Similarity=0.403 Sum_probs=90.4
Q ss_pred CCccEEEccCCCCCCcchhhhCCC-CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecC
Q 047519 413 PNLFGLGLSACNISEFPDILRTLH-QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFD 491 (892)
Q Consensus 413 ~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~ 491 (892)
+.++.|++.+|.++.+|.....+. +|+.|++++|.+. .+|..+..+ ++|+.|++++|+++...+... .+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l--~~L~~L~l~~N~l~~l~~~~~-~~------ 185 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNL--PNLKNLDLSFNDLSDLPKLLS-NL------ 185 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhcc--ccccccccCCchhhhhhhhhh-hh------
Confidence 344444444444444444444442 4555555555544 222333333 444455554444443332110 01
Q ss_pred CCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEE
Q 047519 492 SNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVL 571 (892)
Q Consensus 492 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 571 (892)
+.|+.|++++|++. .+|........|++|.+++|++. ..+..+..+.++..+.+.+|++.. .+..++.+++++.|
T Consensus 186 --~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L 260 (394)
T COG4886 186 --SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETL 260 (394)
T ss_pred --hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhcccccccee
Confidence 13444444444444 23333233344666666666433 345556666666666666666654 24556666666777
Q ss_pred EccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCc
Q 047519 572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPT 610 (892)
Q Consensus 572 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 610 (892)
++++|.++...+ + ..+.+++.|++++|.++...|.
T Consensus 261 ~~s~n~i~~i~~--~--~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 261 DLSNNQISSISS--L--GSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccccccc--c--cccCccCEEeccCccccccchh
Confidence 777666644332 2 5566667777777766655543
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=1.9e-11 Score=124.62 Aligned_cols=97 Identities=9% Similarity=-0.042 Sum_probs=55.8
Q ss_pred CCCCCCEEecCCccCccccccc-----CCCCCCcccEEEccCCCCcCcc----CChhHHHHhhhcccccccccccccCCC
Q 047519 167 HDDLEEEIYMTQLDGFKVAEKE-----NWLQEESFIYLLLHVDDMEIAS----KSKDEIEKLKTQLNQEFEMKDLGEAKK 237 (892)
Q Consensus 167 ~l~~L~~L~L~~~~~~~~~~~~-----~~l~~~~L~~L~Ls~n~~~l~~----~~p~~i~~l~~~~~~~~p~~~l~~l~~ 237 (892)
.+..+..++|++|.+....... ... ++|+..++++- ++| .+|+.+..++ +.+..+++
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~--~~L~~v~~sd~---ftGR~~~Ei~e~L~~l~---------~aL~~~~~ 93 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASK--KELREVNLSDM---FTGRLKDEIPEALKMLS---------KALLGCPK 93 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhc--ccceeeehHhh---hcCCcHHHHHHHHHHHH---------HHHhcCCc
Confidence 4555666666666654332222 344 56666666642 333 3454444444 55667778
Q ss_pred CCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCC
Q 047519 238 ILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFA 295 (892)
Q Consensus 238 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~ 295 (892)
|++||||+|.+....++.+.. -+..+..|++|.|.+|.+.
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~------------------ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEE------------------LLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred eeEeeccccccCccchHHHHH------------------HHHhccCHHHHhhhcCCCC
Confidence 888888888665444433321 4556777777777777664
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=5.8e-12 Score=128.25 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=63.3
Q ss_pred hhcCCCCCcEEEccCCCCCcC----CCccccCCCCCcEEecCccccccceeecc-----chhhhhhccCCCCCcCEEEcc
Q 047519 277 YIGDLDKRRSITGYVFNFAGG----PINWKSTLQSTVVLSTTEAEYMAITKAVK-----EAIWLQVFVRGRRHYAEPHFS 347 (892)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-----~l~~l~l~~~~l~~L~~L~Ls 347 (892)
.+...+.|+.+.+..|.+... +...+..+++|++||+. +|.++..-. .+ ..+++|++|+++
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~---DNtft~egs~~LakaL-------~s~~~L~El~l~ 249 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR---DNTFTLEGSVALAKAL-------SSWPHLRELNLG 249 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecc---cchhhhHHHHHHHHHh-------cccchheeeccc
Confidence 445556677777777665432 22345666777777777 666653222 34 556667777777
Q ss_pred CCcCCcCCCcccc-----CCCCCCEEECcCCcCCCccC---hhhcCCCCCCCEEEcccC
Q 047519 348 SNQLSGSIPSSVY-----ELENLILLRLPSNRLSGTTE---LYDFAKLKNLKWLFVSNN 398 (892)
Q Consensus 348 ~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n 398 (892)
+|.+......+|. ..++|++|.+.+|.|+..-. .......+.|+.|+|++|
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 7766544333332 35677777777776653110 122334566666666666
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.4e-10 Score=121.34 Aligned_cols=211 Identities=26% Similarity=0.202 Sum_probs=123.2
Q ss_pred CCCCCcCEEEccCCcCCcCCC-ccccCCCCCCEEECcCCcCCCccCh-hhcCCCCCCCEEEcccCCCCCCccccCCC--C
Q 047519 336 RGRRHYAEPHFSSNQLSGSIP-SSVYELENLILLRLPSNRLSGTTEL-YDFAKLKNLKWLFVSNNRLSLSTKLKVNS--S 411 (892)
Q Consensus 336 ~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~ 411 (892)
.++.+|+++.|.+........ .....+++++.|||+.|-+....+. .....+|+|+.|+|+.|++ ........ .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl--~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL--SNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc--cCCccccchhh
Confidence 455666666666665542111 2455677888888888766532221 2345678888888888843 32222222 6
Q ss_pred CCCccEEEccCCCCC--CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeee
Q 047519 412 FPNLFGLGLSACNIS--EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLN 489 (892)
Q Consensus 412 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 489 (892)
++.|+.|.++.|.++ .+-..+..+|+|+.|+|.+|............+ ..|+.|+|++|++......
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~--~~L~~LdLs~N~li~~~~~--------- 264 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL--QTLQELDLSNNNLIDFDQG--------- 264 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh--hHHhhccccCCcccccccc---------
Confidence 788888888888888 555666778888888888885332222222233 5677777777766543210
Q ss_pred cCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCC-CCcc-----ccCCCCCcEEEccCCCCCCC-cchhc
Q 047519 490 FDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGP-LPLS-----LVNCHHLEVLDVGNNQINDN-FPNWL 562 (892)
Q Consensus 490 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~-~p~~~ 562 (892)
...+.++.|+.|+++.+.+... .|+. ...+++|++|++..|+|... .-..+
T Consensus 265 ----------------------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 265 ----------------------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred ----------------------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence 1123344555555555555421 1111 23456777777777777541 11234
Q ss_pred cCCCCCCEEEccCCcCCCC
Q 047519 563 EILPELQVLILRSNRFWGP 581 (892)
Q Consensus 563 ~~l~~L~~L~L~~N~l~~~ 581 (892)
..+++|+.|.+..|.++..
T Consensus 323 ~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccchhhhhhccccccccc
Confidence 4567777777777777543
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=7e-10 Score=133.08 Aligned_cols=105 Identities=19% Similarity=0.125 Sum_probs=78.4
Q ss_pred CCCCeEecCCCC--CCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCC
Q 047519 90 PHIRKLNLAFND--FNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLH 167 (892)
Q Consensus 90 ~~L~~L~Ls~n~--l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~ 167 (892)
+.|++|-+..|. +... -+++|..++.|++||||+|.-.+.+|.+|+ .|.+||||+++++. ...+|..+. +
T Consensus 545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~LryL~L~~t~-I~~LP~~l~----~ 616 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLRYLDLSDTG-ISHLPSGLG----N 616 (889)
T ss_pred CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhhcccccCCC-ccccchHHH----H
Confidence 368888888775 3332 335578888888888888776678888888 88888888888876 457888888 8
Q ss_pred CCCCCEEecCCccCccccccc-CCCCCCcccEEEccCC
Q 047519 168 DDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVD 204 (892)
Q Consensus 168 l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n 204 (892)
+..|.+|++..+......+.. ..+ ++|++|.+...
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~s 652 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPRS 652 (889)
T ss_pred HHhhheeccccccccccccchhhhc--ccccEEEeecc
Confidence 888888888877765555555 557 78888887655
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=2e-10 Score=114.14 Aligned_cols=105 Identities=26% Similarity=0.305 Sum_probs=45.1
Q ss_pred CCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEE
Q 047519 363 ENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFN 442 (892)
Q Consensus 363 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 442 (892)
..|+++||++|.|+ .+. .+..-.|+++.|++|+|.+...+. ...+++|+.|||++|.++.+..|-..+-+++.|.
T Consensus 284 q~LtelDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QID-ESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhh-hhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 34444455554444 222 233334444555555542221111 1134445555555554444444444444455555
Q ss_pred ccCCCCCCCCchhhhhhCCCcccEEEccCCCCCC
Q 047519 443 LSKNRIHGRISSWMWDLGITALYYLDLSNNFLTN 476 (892)
Q Consensus 443 Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 476 (892)
|++|.|.. -..+..+ -+|..||+++|+|..
T Consensus 359 La~N~iE~--LSGL~KL--YSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKL--YSLVNLDLSSNQIEE 388 (490)
T ss_pred hhhhhHhh--hhhhHhh--hhheeccccccchhh
Confidence 55554431 1223333 445555555555443
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.3e-10 Score=118.66 Aligned_cols=186 Identities=20% Similarity=0.146 Sum_probs=107.3
Q ss_pred CCCccEEEccCCCCC---CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCee
Q 047519 412 FPNLFGLGLSACNIS---EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQL 488 (892)
Q Consensus 412 l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 488 (892)
+++++.|+|+.|-+. .+-.....+|+|+.|+++.|++.......... .++.|+.|.++.|.++...-..+
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-~l~~lK~L~l~~CGls~k~V~~~------ 217 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-LLSHLKQLVLNSCGLSWKDVQWI------ 217 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh-hhhhhheEEeccCCCCHHHHHHH------
Confidence 344444444444333 12233445555666666665554222211111 12556666666665552210000
Q ss_pred ecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCC--ccccCCCCCcEEEccCCCCCCC-cchh----
Q 047519 489 NFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP--LSLVNCHHLEVLDVGNNQINDN-FPNW---- 561 (892)
Q Consensus 489 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~-~p~~---- 561 (892)
+-.+++|+.|++..|...........-+..|++|+|++|++.. .+ ...+.++.|+.|+++.+.+... .|+.
T Consensus 218 -~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 218 -LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred -HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchh
Confidence 0111255666666664333333334456689999999998873 34 4567899999999999999874 3333
Q ss_pred -ccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCc
Q 047519 562 -LEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV 607 (892)
Q Consensus 562 -~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 607 (892)
...+++|++|++..|++.. .+..-....+++|+.|.+..|.++..
T Consensus 296 kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence 3468999999999999832 22222235677888888889998754
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=3.3e-10 Score=112.61 Aligned_cols=61 Identities=31% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCC-cchhccCCCCCCEEEccCCcC
Q 047519 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDN-FPNWLEILPELQVLILRSNRF 578 (892)
Q Consensus 516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l 578 (892)
.+.++++|.|++|.+.. -..+..+-+|..||+++|+|... -...++++|.|+.+.|.+|.+
T Consensus 350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 34455666666665542 12344555566666666665432 112344555555555555554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=2.4e-09 Score=103.13 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=11.9
Q ss_pred CCCccEEEccCCCCCCcc--hhhhCCCCccEEEccCCCCC
Q 047519 412 FPNLFGLGLSACNISEFP--DILRTLHQLQWFNLSKNRIH 449 (892)
Q Consensus 412 l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 449 (892)
+|+|++|++++|++..+. ..+..+++|+.|++.+|.+.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 344444444444443221 23445555555555555554
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.77 E-value=7.3e-09 Score=74.77 Aligned_cols=40 Identities=43% Similarity=0.858 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCC--CCCccccceEec
Q 047519 8 HDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKED--ADCCSWDGVTCD 60 (892)
Q Consensus 8 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~--~~~c~w~gv~C~ 60 (892)
++|++||++||+++..+ +. ..+.+|+.. .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~--~~-----------~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNND--PS-----------GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-S--C------------CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccc--cC-----------cccccCCCcCCCCCeeeccEEeC
Confidence 68999999999999854 32 489999976 799999999996
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=3.1e-09 Score=102.33 Aligned_cols=104 Identities=27% Similarity=0.250 Sum_probs=32.9
Q ss_pred CCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccE
Q 047519 338 RRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFG 417 (892)
Q Consensus 338 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 417 (892)
+.+|+.|++++|.++.. +.+..+++|++|++++|+|+. +.......+++|++|++++|+|.-.+.+.....+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 33444444444444421 124445555555555555542 220111234555555555554433333322224555555
Q ss_pred EEccCCCCCCcc----hhhhCCCCccEEEcc
Q 047519 418 LGLSACNISEFP----DILRTLHQLQWFNLS 444 (892)
Q Consensus 418 L~L~~n~l~~lp----~~l~~l~~L~~L~Ls 444 (892)
|++.+|.++.-+ ..+..+|+|+.||-.
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 555555555322 356778888887753
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=2.4e-09 Score=120.63 Aligned_cols=104 Identities=25% Similarity=0.250 Sum_probs=52.2
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
+++.+++.+|.|..... .+..+++|++|++++|.|+... .+..++.|+.|++++|.|+.. ..+..+++|+.++++
T Consensus 96 ~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence 44455555555543211 1344555666666666655322 244445566666666666542 234445566666666
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (892)
+|++...-+... ..+.+++.+++++|.+.
T Consensus 171 ~n~i~~ie~~~~--~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YNRIVDIENDEL--SELISLEELDLGGNSIR 199 (414)
T ss_pred cchhhhhhhhhh--hhccchHHHhccCCchh
Confidence 665543333101 34555666666666654
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=2.1e-09 Score=121.11 Aligned_cols=246 Identities=25% Similarity=0.250 Sum_probs=128.9
Q ss_pred CCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCC
Q 047519 413 PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDS 492 (892)
Q Consensus 413 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~ 492 (892)
..++.+.+..|.+..+-..+..+.+|+.|++.+|+|..... .+..+ ++|++|++++|.|+.+.+
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~--~~L~~L~ls~N~I~~i~~------------- 135 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSL--VNLQVLDLSFNKITKLEG------------- 135 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhh--hcchheeccccccccccc-------------
Confidence 33444444444444432334455556666666665553221 12223 555555555555543321
Q ss_pred CCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEE
Q 047519 493 NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVL 571 (892)
Q Consensus 493 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L 571 (892)
+..++.|+.|++++|.++. + ..+..++.|+.+++++|++...-+ . ...+.+++.+
T Consensus 136 ---------------------l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l 191 (414)
T KOG0531|consen 136 ---------------------LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEEL 191 (414)
T ss_pred ---------------------hhhccchhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHH
Confidence 2233345666666666652 1 234446666666666666665433 1 3556667777
Q ss_pred EccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccc
Q 047519 572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGI 651 (892)
Q Consensus 572 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (892)
++.+|.+..... . ..+..+..+++..|.++..-+.....
T Consensus 192 ~l~~n~i~~i~~--~--~~~~~l~~~~l~~n~i~~~~~l~~~~------------------------------------- 230 (414)
T KOG0531|consen 192 DLGGNSIREIEG--L--DLLKKLVLLSLLDNKISKLEGLNELV------------------------------------- 230 (414)
T ss_pred hccCCchhcccc--h--HHHHHHHHhhcccccceeccCcccch-------------------------------------
Confidence 777776632221 1 23334444566666665332211000
Q ss_pred hhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC---Cccc
Q 047519 652 DIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH---IPTQ 728 (892)
Q Consensus 652 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---ip~~ 728 (892)
...|+.+++++|.+. .++..+..+..+..|+ +++|++...- .+...+.+..+..+.|.+... ....
T Consensus 231 -------~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~-~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (414)
T KOG0531|consen 231 -------MLHLRELYLSGNRIS-RSPEGLENLKNLPVLD-LSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEY 299 (414)
T ss_pred -------hHHHHHHhcccCccc-cccccccccccccccc-hhhccccccc--cccccchHHHhccCcchhcchhhhhccc
Confidence 013666777777776 4445566666777776 7777776332 244556666677777766521 1111
Q ss_pred -cCCCCCCCEEECCCCcCcccCC
Q 047519 729 -LTSLKYLSVLNLSYNQFEGPIP 750 (892)
Q Consensus 729 -l~~l~~L~~L~ls~N~l~g~iP 750 (892)
......++.+.+.+|+.....+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 300 ITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccccccccCccccccc
Confidence 4456677777788887776554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=6.1e-09 Score=82.29 Aligned_cols=60 Identities=38% Similarity=0.520 Sum_probs=36.4
Q ss_pred ccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcC
Q 047519 685 LLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745 (892)
Q Consensus 685 ~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 745 (892)
+|++|+ +++|+|+...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~-l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLD-LSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEE-ETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEE-CCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455565 666666644445666666666666666666655555666666666666666654
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=1.5e-08 Score=121.79 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=102.2
Q ss_pred ccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCC--CccccCC-CCCcccCCCCceecCCcccCCcchhhhhh
Q 047519 86 LFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSN--FMGSIPA-SIDLINVSRLSTNYLPIFAFSDCFQLDVK 162 (892)
Q Consensus 86 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~--~~~~~p~-~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~ 162 (892)
..+....|...+-+|.+.. ++... ..++|++|-+..|. +. .++. .|. .++.|++|||++|...+.+|..++
T Consensus 519 ~~~~~~~rr~s~~~~~~~~--~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~--~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH--IAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFR--SLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred ccchhheeEEEEeccchhh--ccCCC-CCCccceEEEeecchhhh-hcCHHHHh--hCcceEEEECCCCCccCcCChHHh
Confidence 4556778899998888765 44433 34479999999986 33 4443 466 899999999999888999999999
Q ss_pred cccCCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEE
Q 047519 163 TTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGM 241 (892)
Q Consensus 163 ~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L 241 (892)
.+-+||+|+|++..+. ..|.. .+| ..|.+|++..+ .....+| .....+.+|++|
T Consensus 593 ----~Li~LryL~L~~t~I~-~LP~~l~~L--k~L~~Lnl~~~--~~l~~~~----------------~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 593 ----ELVHLRYLDLSDTGIS-HLPSGLGNL--KKLIYLNLEVT--GRLESIP----------------GILLELQSLRVL 647 (889)
T ss_pred ----hhhhhhcccccCCCcc-ccchHHHHH--Hhhheeccccc--ccccccc----------------chhhhcccccEE
Confidence 9999999999999887 55555 889 99999999888 4444445 556668999999
Q ss_pred EcccCC
Q 047519 242 EICRNR 247 (892)
Q Consensus 242 ~L~~n~ 247 (892)
.+..-.
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 987654
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=1.3e-08 Score=80.39 Aligned_cols=61 Identities=38% Similarity=0.487 Sum_probs=56.5
Q ss_pred hhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcC
Q 047519 660 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNML 721 (892)
Q Consensus 660 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 721 (892)
++|+.|++++|+++...+..|.++++|++|+ +++|+++...|..|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~-l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLD-LSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEE-ETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeE-ccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977678899999999999 999999988889999999999999999986
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4e-09 Score=105.15 Aligned_cols=181 Identities=12% Similarity=0.033 Sum_probs=108.0
Q ss_pred CCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCC
Q 047519 91 HIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDL 170 (892)
Q Consensus 91 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~ 170 (892)
.|++||||...++...+-.-+..|.+|+-|.|.++++.+.+-..|+ +-.+|+.|+|+.+. |--..++...|++++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA--kN~~L~~lnlsm~s--G~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA--KNSNLVRLNLSMCS--GFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh--ccccceeecccccc--ccchhHHHHHHHhhhh
Confidence 4788888887776554455567788888888888888877777777 77888888887632 1111233334448888
Q ss_pred CCEEecCCccCccccccc--CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCC
Q 047519 171 EEEIYMTQLDGFKVAEKE--NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRT 248 (892)
Q Consensus 171 L~~L~L~~~~~~~~~~~~--~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~ 248 (892)
|..|+|++|......... ... +++|+.|+|++++-.+... .+. .-..++++|.+|||++|..
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hi-se~l~~LNlsG~rrnl~~s---h~~------------tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHI-SETLTQLNLSGYRRNLQKS---HLS------------TLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhh-chhhhhhhhhhhHhhhhhh---HHH------------HHHHhCCceeeeccccccc
Confidence 888888888765544322 111 1667777777762001000 000 1224577777777777621
Q ss_pred CCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCc---cccCCCCCcEEecC
Q 047519 249 CGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPIN---WKSTLQSTVVLSTT 314 (892)
Q Consensus 249 ~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~l~ 314 (892)
+...... .+.+++.|++|.++.|.. .+|. .+...+.|.+|++.
T Consensus 326 --------------------l~~~~~~-~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 326 --------------------LKNDCFQ-EFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred --------------------cCchHHH-HHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence 1111222 556677777777777642 2333 24555667777666
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=3.4e-08 Score=109.58 Aligned_cols=105 Identities=23% Similarity=0.245 Sum_probs=51.9
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
.++.|+|++|+++..- .+..+++|++|||++|.+....-....+|. |+.|.+++|.++.. ..+.++.+|+.||++
T Consensus 188 ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLS 262 (1096)
T ss_pred HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchh
Confidence 4555666666655332 455555666666666665532222233333 56666666655442 234455556666666
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (892)
+|-+.+.---. .+..+..|+.|.|.+|.+-
T Consensus 263 yNll~~hseL~-pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 263 YNLLSEHSELE-PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hhhhhcchhhh-HHHHHHHHHHHhhcCCccc
Confidence 66554322111 1133445555555555553
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=4.6e-08 Score=108.54 Aligned_cols=127 Identities=27% Similarity=0.269 Sum_probs=97.2
Q ss_pred CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC--CCCCcc
Q 047519 339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS--SFPNLF 416 (892)
Q Consensus 339 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~ 416 (892)
-.|...+.++|.+. .+..++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+.. +|... .+. |+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~---vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRH---VPQLSMVGCK-LQ 235 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhcc---ccccchhhhh-he
Confidence 35777888888887 5667788889999999999998744 467889999999999996543 33332 333 99
Q ss_pred EEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCC-chhhhhhCCCcccEEEccCCCCCC
Q 047519 417 GLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRI-SSWMWDLGITALYYLDLSNNFLTN 476 (892)
Q Consensus 417 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~~~L~~L~Ls~n~l~~ 476 (892)
.|.+++|.++++ ..+.++.+|+.||+++|-|.+.- -..++.+ ..|+.|.|.+|++--
T Consensus 236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsL--s~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSL--SSLIVLWLEGNPLCC 293 (1096)
T ss_pred eeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHH--HHHHHHhhcCCcccc
Confidence 999999999877 45788999999999999887532 1234555 788899999988754
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.7e-08 Score=100.67 Aligned_cols=160 Identities=9% Similarity=-0.013 Sum_probs=75.4
Q ss_pred ccccCCCCCEEEcccCCCCCcCCccccCCCCcceec----ccceeecChhhhcCCCCCcEEEccCCCCCcCCCcc-ccC-
Q 047519 231 DLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLG----QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINW-KST- 304 (892)
Q Consensus 231 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~----~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~- 304 (892)
-+..|.+|+.|.+.++++...+...+++-.+|+.|+ +.++..-..--+.+++.|..|++++|.+....... +..
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 345667777777777766666655555555555555 22222111113456667777777776654432111 111
Q ss_pred CCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCc-CCcCCCccccCCCCCCEEECcCCcCCCccCh--
Q 047519 305 LQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQ-LSGSIPSSVYELENLILLRLPSNRLSGTTEL-- 381 (892)
Q Consensus 305 l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-- 381 (892)
-++|+.|+++++..|-....+..+ ...+++|.+|||+.|. ++......|.+++.|++|.++.|.. .+|.
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL------~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~ 356 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTL------VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETL 356 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHH------HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHe
Confidence 135666666622111111111100 1455666666666542 2322233444555566665555542 1220
Q ss_pred hhcCCCCCCCEEEcccC
Q 047519 382 YDFAKLKNLKWLFVSNN 398 (892)
Q Consensus 382 ~~~~~l~~L~~L~Ls~n 398 (892)
-.+...|.|.+|++.++
T Consensus 357 ~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccCcceEEEEeccc
Confidence 12334455555555444
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=5.8e-08 Score=85.98 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=51.4
Q ss_pred hheeeecCCCcCCCCChhhhc-CccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEE
Q 047519 661 IFMTIDLSSNKFQGGIPEVVG-KLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 739 (892)
Q Consensus 661 ~L~~LdLs~N~l~~~~p~~~~-~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 739 (892)
.|+.++|++|.+. ..|+.|. ..+.++.|| |++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|+
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lN-l~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLN-LANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhh-cchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 3555666666666 3444443 334566666 6666666 55666666666666666666666 4555555566666666
Q ss_pred CCCCcCcccCCCC
Q 047519 740 LSYNQFEGPIPQG 752 (892)
Q Consensus 740 ls~N~l~g~iP~~ 752 (892)
..+|... +||..
T Consensus 130 s~~na~~-eid~d 141 (177)
T KOG4579|consen 130 SPENARA-EIDVD 141 (177)
T ss_pred CCCCccc-cCcHH
Confidence 6666654 45543
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=5.1e-07 Score=89.25 Aligned_cols=191 Identities=10% Similarity=-0.028 Sum_probs=96.8
Q ss_pred CCCCCCEEecCCccCccccccc-----CCCCCCcccEEEccCCCCcCccC----ChhHHHHhhhcccccccccccccCCC
Q 047519 167 HDDLEEEIYMTQLDGFKVAEKE-----NWLQEESFIYLLLHVDDMEIASK----SKDEIEKLKTQLNQEFEMKDLGEAKK 237 (892)
Q Consensus 167 ~l~~L~~L~L~~~~~~~~~~~~-----~~l~~~~L~~L~Ls~n~~~l~~~----~p~~i~~l~~~~~~~~p~~~l~~l~~ 237 (892)
-+..+..++||+|.+....... ++- .+|+..+++.- ++|. +|+.+.-+. +.+.+|++
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~--~~L~vvnfsd~---ftgr~kde~~~~L~~Ll---------~aLlkcp~ 93 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANV--RNLRVVNFSDA---FTGRDKDELYSNLVMLL---------KALLKCPR 93 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhh--cceeEeehhhh---hhcccHHHHHHHHHHHH---------HHHhcCCc
Confidence 4556666667766665443332 333 66666666653 3333 222222222 45667778
Q ss_pred CCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCcc-------------ccC
Q 047519 238 ILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINW-------------KST 304 (892)
Q Consensus 238 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~-------------l~~ 304 (892)
|+..+||.|.+....|+.++. .++.-+.|++|.+++|.+...--.- ..+
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d------------------~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~ 155 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGD------------------LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAAD 155 (388)
T ss_pred ceeeeccccccCcccchHHHH------------------HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhcc
Confidence 888888877766555544331 4566677777777777653211111 123
Q ss_pred CCCCcEEecCccccccceeecc-----chhhhhhccCCCCCcCEEEccCCcCCcCCC-----ccccCCCCCCEEECcCCc
Q 047519 305 LQSTVVLSTTEAEYMAITKAVK-----EAIWLQVFVRGRRHYAEPHFSSNQLSGSIP-----SSVYELENLILLRLPSNR 374 (892)
Q Consensus 305 l~~L~~L~l~~~~~n~l~~~~p-----~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p-----~~l~~l~~L~~L~L~~n~ 374 (892)
-|.|++.... .|++...-. .+ ..-.+|+++.+.+|.|.-..- ..+..+.+|++|||.+|-
T Consensus 156 kp~Le~vicg---rNRlengs~~~~a~~l-------~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 156 KPKLEVVICG---RNRLENGSKELSAALL-------ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred CCCceEEEec---cchhccCcHHHHHHHH-------HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 3556666665 665532111 12 222456666666665542110 122345566666666665
Q ss_pred CCCccC---hhhcCCCCCCCEEEcccCC
Q 047519 375 LSGTTE---LYDFAKLKNLKWLFVSNNR 399 (892)
Q Consensus 375 l~~~~~---~~~~~~l~~L~~L~Ls~n~ 399 (892)
++..-. ...+..++.|+.|.+.+|-
T Consensus 226 ft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 226 FTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred hhhhhHHHHHHHhcccchhhhccccchh
Confidence 542111 1233344555566655553
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=8.5e-07 Score=88.83 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=45.3
Q ss_pred CCCEEEccCCCCCCC-CCccccCCCCCcEEEccCCCCCCC-cchhccCCCCCCEEEccCCcCCCC----CCCCCCCcCCC
Q 047519 519 NLTNLNLNGNRLEGP-LPLSLVNCHHLEVLDVGNNQINDN-FPNWLEILPELQVLILRSNRFWGP----IGDNTTIVPFP 592 (892)
Q Consensus 519 ~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~l~ 592 (892)
++..+-+..|.+... -...+..++.+..|+|+.|+|..- -.+.+.++++|..|.+++|++... .+..+.++.++
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 455555555554321 112344455566677777766541 123456677777777777776432 22333346677
Q ss_pred CccEEEcC
Q 047519 593 RFRIIDLS 600 (892)
Q Consensus 593 ~L~~L~Ls 600 (892)
++++|+=+
T Consensus 280 ~v~vLNGs 287 (418)
T KOG2982|consen 280 KVQVLNGS 287 (418)
T ss_pred ceEEecCc
Confidence 88877644
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=1e-06 Score=88.34 Aligned_cols=64 Identities=30% Similarity=0.407 Sum_probs=34.1
Q ss_pred CCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcc--hhhhCCCCccEEEccCCCCCC
Q 047519 387 LKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFP--DILRTLHQLQWFNLSKNRIHG 450 (892)
Q Consensus 387 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~ 450 (892)
+|++..+.+..|++.........-.+|.+.-|+|+.+++.... +.+..+++|..|.++++.+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 3455555555554332222222224555556666666666332 456666777777777776653
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=3.2e-06 Score=75.21 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=45.0
Q ss_pred heeeecCCCcCCCCChhhhcC---ccccccccccCCCCCCCCcchhccC-CCCCCeeeCCCCcCCCCCccccCCCCCCCE
Q 047519 662 FMTIDLSSNKFQGGIPEVVGK---LNLLKGLNNISHNNLTGDIPSLLRN-LTEVESLDLSSNMLVGHIPTQLTSLKYLSV 737 (892)
Q Consensus 662 L~~LdLs~N~l~~~~p~~~~~---l~~L~~L~~Ls~N~l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 737 (892)
+..+|||++.+. .+++.... ...|+..+ |++|.+. ..|..|.. .+.++.|+|++|.|+ .+|..++.++.|+.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~-ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKIS-LSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEe-cccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 445666666554 44443332 33444445 6666666 33444433 345666666666666 55666666666666
Q ss_pred EECCCCcCc
Q 047519 738 LNLSYNQFE 746 (892)
Q Consensus 738 L~ls~N~l~ 746 (892)
+|+++|+|.
T Consensus 105 lNl~~N~l~ 113 (177)
T KOG4579|consen 105 LNLRFNPLN 113 (177)
T ss_pred cccccCccc
Confidence 666666665
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.77 E-value=7.7e-07 Score=93.44 Aligned_cols=305 Identities=12% Similarity=-0.021 Sum_probs=148.7
Q ss_pred CCCCeEecCCCCCCCC-CCCCcCcCCCCCCeEeCCCCC-CccccCCCCCcccCCCCceecCCccc-CCcchhhhhhcccC
Q 047519 90 PHIRKLNLAFNDFNYS-EISSGFSQLRSLTLLNLSSSN-FMGSIPASIDLINVSRLSTNYLPIFA-FSDCFQLDVKTTFL 166 (892)
Q Consensus 90 ~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~-~~~~~p~~l~~~~L~~L~~L~Ls~~~-~~~~~p~~l~~~~~ 166 (892)
-.|+.|.|.++.=.+. ++-.+-.+++++++|++.++. ++...-.+++. .|++|++|+|..+. ++...-+.++ .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~-~C~~l~~l~L~~c~~iT~~~Lk~la---~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR-YCRKLRHLNLHSCSSITDVSLKYLA---E 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH-hcchhhhhhhcccchhHHHHHHHHH---H
Confidence 3577788877753322 233456778899999888875 33322233432 78889999987722 2333333222 2
Q ss_pred CCCCCCEEecCCcc-Cccccccc--CCCCCCcccEEEccCCCCcCccCChh-HHHHhhhcccccccccccccCCCCCEEE
Q 047519 167 HDDLEEEIYMTQLD-GFKVAEKE--NWLQEESFIYLLLHVDDMEIASKSKD-EIEKLKTQLNQEFEMKDLGEAKKILGME 242 (892)
Q Consensus 167 ~l~~L~~L~L~~~~-~~~~~~~~--~~l~~~~L~~L~Ls~n~~~l~~~~p~-~i~~l~~~~~~~~p~~~l~~l~~L~~L~ 242 (892)
.+++|++|++++|. +.+..-.. .++ ..++.+.+.+| . ..+. .+. ..=+.+..+..++
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~--~~l~~~~~kGC--~---e~~le~l~------------~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGC--KELEKLSLKGC--L---ELELEALL------------KAAAYCLEILKLN 274 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccc--hhhhhhhhccc--c---cccHHHHH------------HHhccChHhhccc
Confidence 78899999999986 34422222 555 66777766666 1 1110 010 1112345566666
Q ss_pred cccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCC-ccc-cCCCCCcEEecCcccccc
Q 047519 243 ICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPI-NWK-STLQSTVVLSTTEAEYMA 320 (892)
Q Consensus 243 L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~L~l~~~~~n~ 320 (892)
+..|....... +. . .-..+..|++|..+++...+..+ ..+ .+..+|+.|.++ .|+
T Consensus 275 l~~c~~lTD~~--~~-----------------~-i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~---~c~ 331 (483)
T KOG4341|consen 275 LQHCNQLTDED--LW-----------------L-IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS---GCQ 331 (483)
T ss_pred hhhhccccchH--HH-----------------H-HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc---ccc
Confidence 66653211100 00 0 11234455555555544322111 111 234555555555 443
Q ss_pred ceeeccchhhhhhccCCCCCcCEEEccCCcCCc--CCCccccCCCCCCEEECcCCcCCCccCh----hhcCCCCCCCEEE
Q 047519 321 ITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSG--SIPSSVYELENLILLRLPSNRLSGTTEL----YDFAKLKNLKWLF 394 (892)
Q Consensus 321 l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~ 394 (892)
--+..- + .....+++.|+.+++..+.... .+...-.+++.|++|.++++........ ..-..+..|+.+.
T Consensus 332 ~fsd~~-f---t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 332 QFSDRG-F---TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred hhhhhh-h---hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee
Confidence 211111 0 0001455666666666554321 1112223556667776666643211100 1113355667777
Q ss_pred cccCCCCCCccccCCCCCCCccEEEccCCCCC---CcchhhhCCCCccEEEcc
Q 047519 395 VSNNRLSLSTKLKVNSSFPNLFGLGLSACNIS---EFPDILRTLHQLQWFNLS 444 (892)
Q Consensus 395 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls 444 (892)
|++++............+++|+.+++..++-. .+...-..+|+++..-+-
T Consensus 408 L~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 408 LDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred ecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 77763222222222225667777777766432 333445567777665443
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.74 E-value=7.9e-06 Score=81.03 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=15.7
Q ss_pred ccccCCCCCEEEcccCCCCCcC
Q 047519 231 DLGEAKKILGMEICRNRTCGKT 252 (892)
Q Consensus 231 ~l~~l~~L~~L~L~~n~~~~~~ 252 (892)
.+..+..+..++||+|.+...-
T Consensus 25 el~~~d~~~evdLSGNtigtEA 46 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEA 46 (388)
T ss_pred HHHhhcceeEEeccCCcccHHH
Confidence 4445778888999988776543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=2.4e-05 Score=56.47 Aligned_cols=36 Identities=42% Similarity=0.653 Sum_probs=16.6
Q ss_pred CCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCc
Q 047519 710 EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746 (892)
Q Consensus 710 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 746 (892)
+|++|++++|+|+ .+|..+.+|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555554 34444455555555555555544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=6.1e-05 Score=54.39 Aligned_cols=37 Identities=41% Similarity=0.500 Sum_probs=29.1
Q ss_pred CCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCC
Q 047519 413 PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH 449 (892)
Q Consensus 413 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 449 (892)
++|++|++++|+++.+|..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4678888888888888877888888888888888887
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00022 Score=77.37 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=40.0
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCcc
Q 047519 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR 595 (892)
Q Consensus 516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 595 (892)
.+.+++.|++++|.++ .+|. -..+|++|.++++.-...+|+.+ .++|+.|++++|.....+| ++|+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ESVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cccc
Confidence 3456677777777666 4441 22357777776644334455433 2467777777663212222 2355
Q ss_pred EEEcCCCCC
Q 047519 596 IIDLSHNEF 604 (892)
Q Consensus 596 ~L~Ls~N~l 604 (892)
.|+++.|..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 666655543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.0002 Score=77.70 Aligned_cols=55 Identities=15% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCC-CCCCcchhhhCCCCccEEEccCC
Q 047519 385 AKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSAC-NISEFPDILRTLHQLQWFNLSKN 446 (892)
Q Consensus 385 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~Ls~n 446 (892)
..+.+++.|++++|.+.. +|. -.++|++|.+++| .++.+|+.+ .++|++|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~s---LP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIES---LPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcc---cCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 345666677777663221 121 1234666666653 344555433 235666666655
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00014 Score=69.58 Aligned_cols=106 Identities=24% Similarity=0.216 Sum_probs=65.0
Q ss_pred CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEE
Q 047519 339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGL 418 (892)
Q Consensus 339 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 418 (892)
.+...+||++|.+... ..|..+++|.+|.+.+|+|+..-| ..-..+++|+.|.|.+|.|.-.+.+.....+|.|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3455666666666421 345566777777777777764433 4444566677777777755555555555566677777
Q ss_pred EccCCCCCCcc----hhhhCCCCccEEEccCCC
Q 047519 419 GLSACNISEFP----DILRTLHQLQWFNLSKNR 447 (892)
Q Consensus 419 ~L~~n~l~~lp----~~l~~l~~L~~L~Ls~n~ 447 (892)
.+-+|..+.-+ ..+..+|+|+.||..+-.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77777666333 245667777777776543
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.47 E-value=3.6e-06 Score=88.55 Aligned_cols=107 Identities=13% Similarity=-0.018 Sum_probs=49.2
Q ss_pred CCcEEEccCCCCCcCC--CccccCCCCCcEEecCccccccceeecc--chhhhhhccCCCCCcCEEEccCC-cCCcCCCc
Q 047519 283 KRRSITGYVFNFAGGP--INWKSTLQSTVVLSTTEAEYMAITKAVK--EAIWLQVFVRGRRHYAEPHFSSN-QLSGSIPS 357 (892)
Q Consensus 283 ~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~l~~~~~n~l~~~~p--~l~~l~l~~~~l~~L~~L~Ls~n-~l~~~~p~ 357 (892)
.|+.|.+.++.-.+.- -....++++++.|.+. ++....... .+ ...+++|+.|++..+ .++...-.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~---gc~~iTd~s~~sl------a~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALY---GCKKITDSSLLSL------ARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhh---cceeccHHHHHHH------HHhcchhhhhhhcccchhHHHHHH
Confidence 4677777776543321 1233456677777666 554222111 11 034566666666653 33322222
Q ss_pred c-ccCCCCCCEEECcCCc-CCCccChhhcCCCCCCCEEEcccC
Q 047519 358 S-VYELENLILLRLPSNR-LSGTTELYDFAKLKNLKWLFVSNN 398 (892)
Q Consensus 358 ~-l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n 398 (892)
. ...+++|++|+++.+. +++.--...+.++..++.+.+.+|
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 1 1245566666666553 222111122344444555544444
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.00045 Score=66.18 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=75.7
Q ss_pred CCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcC
Q 047519 306 QSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFA 385 (892)
Q Consensus 306 ~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 385 (892)
.....+|++ +|.+. .++.| ..++.|.+|.+.+|+|+..-|.--.-+++|+.|.|.+|.|.......-+.
T Consensus 42 d~~d~iDLt---dNdl~-~l~~l-------p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 42 DQFDAIDLT---DNDLR-KLDNL-------PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred cccceeccc---ccchh-hcccC-------CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc
Confidence 356677777 77663 34455 77888888899999888666654455678999999999887544445577
Q ss_pred CCCCCCEEEcccCCCCCCccccCCC--CCCCccEEEccCCCC
Q 047519 386 KLKNLKWLFVSNNRLSLSTKLKVNS--SFPNLFGLGLSACNI 425 (892)
Q Consensus 386 ~l~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l 425 (892)
.+|+|++|.+-+|++.-........ .+|+|+.||+..-..
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8889999999988543222221111 688999998876543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00012 Score=86.44 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=28.0
Q ss_pred hhcCCCCCcEEEccCCCCCcCC--C----ccccCCCCCcEEecCccccccceeec
Q 047519 277 YIGDLDKRRSITGYVFNFAGGP--I----NWKSTLQSTVVLSTTEAEYMAITKAV 325 (892)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~l~~~~~n~l~~~~ 325 (892)
.+.++++|++||+|........ . +.-..+|+|+.||.+ +..+...+
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS---gTdi~~~~ 266 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS---GTDINEEI 266 (699)
T ss_pred HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC---CcchhHHH
Confidence 4567777777777776544321 1 122347788888888 66665443
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.01 E-value=0.0004 Score=82.07 Aligned_cols=135 Identities=17% Similarity=0.136 Sum_probs=96.0
Q ss_pred eEEEEECCCCCCC-CCCCCCCCcc-CCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCC
Q 047519 65 HVIGLDLSCSWLH-GNIPSNSSLF-FLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSR 142 (892)
Q Consensus 65 ~v~~L~L~~~~l~-g~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~ 142 (892)
....||++|.... ..++. .++ .|++|+.|.+++-.+....+-....++++|+.||+|+++++. + ..++ +|++
T Consensus 123 nL~~LdI~G~~~~s~~W~~--kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS--~Lkn 196 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPK--KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGIS--RLKN 196 (699)
T ss_pred hhhhcCccccchhhccHHH--HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHh--cccc
Confidence 3666777764422 22332 333 489999999999888665344556789999999999999873 3 5678 9999
Q ss_pred CceecCCc-ccCCcchhhhhhcccCCCCCCCEEecCCccCcccc--cc----c-CCCCCCcccEEEccCCCCcCccCCh
Q 047519 143 LSTNYLPI-FAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVA--EK----E-NWLQEESFIYLLLHVDDMEIASKSK 213 (892)
Q Consensus 143 L~~L~Ls~-~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~--~~----~-~~l~~~~L~~L~Ls~n~~~l~~~~p 213 (892)
|++|.+.+ .+....--..+. +|++|++||+|........ .. . ..| |+|+.||.|++ .+...+-
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF----~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L--peLrfLDcSgT--di~~~~l 267 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLF----NLKKLRVLDISRDKNNDDTKIIEQYLECGMVL--PELRFLDCSGT--DINEEIL 267 (699)
T ss_pred HHHHhccCCCCCchhhHHHHh----cccCCCeeeccccccccchHHHHHHHHhcccC--ccccEEecCCc--chhHHHH
Confidence 99999987 332223334556 8999999999997654443 11 1 568 99999999999 7765543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.00057 Score=68.42 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=8.7
Q ss_pred hhCCCCccEEEccCCCCC
Q 047519 432 LRTLHQLQWFNLSKNRIH 449 (892)
Q Consensus 432 l~~l~~L~~L~Ls~n~l~ 449 (892)
+..+.+|..|++.+|..+
T Consensus 112 l~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhcchhhhhcccCCcc
Confidence 334444555555555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.0014 Score=65.78 Aligned_cols=104 Identities=24% Similarity=0.263 Sum_probs=55.2
Q ss_pred CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCC--cCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCC
Q 047519 337 GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSN--RLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPN 414 (892)
Q Consensus 337 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 414 (892)
.+..|+.+++.+..++.. ..+..+++|+.|.++.| ++.+.++ .....+++|++|++++|++.....++....+.+
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 344555555555555421 23445666677777776 4444333 223344677777777775554444444445666
Q ss_pred ccEEEccCCCCCCcc----hhhhCCCCccEEEc
Q 047519 415 LFGLGLSACNISEFP----DILRTLHQLQWFNL 443 (892)
Q Consensus 415 L~~L~L~~n~l~~lp----~~l~~l~~L~~L~L 443 (892)
|..|++.+|..+.+- ..|.-+++|++||-
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 666666666554322 23444555555543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.10 E-value=0.015 Score=53.65 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=49.9
Q ss_pred CCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEE
Q 047519 493 NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572 (892)
Q Consensus 493 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 572 (892)
|.+|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++++|+.+.+.+ .+.......|..+++|+.+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 33555555553 344344455666667777777664 5544445667776777777755 44333345566677777777
Q ss_pred ccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhh
Q 047519 573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKA 618 (892)
Q Consensus 573 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~ 618 (892)
+..+ +.......+ ... .|+.+.+.. .++ .++...|.+++.
T Consensus 88 ~~~~-~~~i~~~~f--~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~ 127 (129)
T PF13306_consen 88 IPSN-ITEIGSSSF--SNC-NLKEINIPS-NIT-KIEENAFKNCTK 127 (129)
T ss_dssp ETTT--BEEHTTTT--TT--T--EEE-TT-B-S-S----GGG----
T ss_pred cCcc-ccEEchhhh--cCC-CceEEEECC-Ccc-EECCcccccccc
Confidence 7654 322222222 444 667776665 333 334444554443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.79 E-value=0.02 Score=52.67 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=5.1
Q ss_pred ccCCCCCCEEEcc
Q 047519 514 FVNSCNLTNLNLN 526 (892)
Q Consensus 514 ~~~l~~L~~L~L~ 526 (892)
|..+++|+.+++.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 3334444444443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.00061 Score=68.26 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=30.5
Q ss_pred CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccC
Q 047519 337 GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN 398 (892)
Q Consensus 337 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 398 (892)
.++.|+.|.||-|+|+..- .+..+++|++|+|..|.|...-....+.++++|+.|-|..|
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3444555555555554322 24455555555555555554333334455555555555555
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.00059 Score=68.34 Aligned_cols=97 Identities=25% Similarity=0.180 Sum_probs=50.4
Q ss_pred CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcc--hhhhCCCCccEE
Q 047519 364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFP--DILRTLHQLQWF 441 (892)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L 441 (892)
+.+.|+..++.+.+. ....+|+.|+.|.|+-|+|. . ......+++|++|+|..|.|..+. ..+.++|+|+.|
T Consensus 20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIs--s-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKIS--S-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHH---HHHHhcccceeEEeeccccc--c-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 334444444444321 23344555555555555221 1 111114555555555555555443 356778888888
Q ss_pred EccCCCCCCCCchh-----hhhhCCCcccEEE
Q 047519 442 NLSKNRIHGRISSW-----MWDLGITALYYLD 468 (892)
Q Consensus 442 ~Ls~n~l~~~~~~~-----~~~l~~~~L~~L~ 468 (892)
.|..|.-.|.-+.. +..+ |+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~L--PnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVL--PNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHc--ccchhcc
Confidence 88888776655432 3344 7777765
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.08 E-value=0.0064 Score=36.47 Aligned_cols=19 Identities=47% Similarity=0.719 Sum_probs=9.1
Q ss_pred CCeeeCCCCcCCCCCccccC
Q 047519 711 VESLDLSSNMLVGHIPTQLT 730 (892)
Q Consensus 711 L~~L~Ls~N~l~~~ip~~l~ 730 (892)
|++|||++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555554 4444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.81 E-value=0.011 Score=35.51 Aligned_cols=20 Identities=45% Similarity=0.705 Sum_probs=12.4
Q ss_pred CCCeEeCCCCCCccccCCCCC
Q 047519 116 SLTLLNLSSSNFMGSIPASID 136 (892)
Q Consensus 116 ~L~~L~Ls~n~~~~~~p~~l~ 136 (892)
+|++|||++|+++ .+|+.|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666666 5666554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.51 E-value=0.00029 Score=79.62 Aligned_cols=187 Identities=18% Similarity=0.129 Sum_probs=104.4
Q ss_pred CCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCC----ccccCC-CCCcE
Q 047519 236 KKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPI----NWKSTL-QSTVV 310 (892)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l-~~L~~ 310 (892)
..+..|.|.+|.+.......++ . .+...+.|+.|++++|.+.+.-- ..+... ..+++
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~-----------------~-~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~ 148 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELA-----------------Q-ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQT 148 (478)
T ss_pred hhHHHhhhhhCccccchHHHHH-----------------H-HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHH
Confidence 3477788888866543322221 2 56677888888888888874311 122222 45666
Q ss_pred EecCccccccceeecc-----chhhhhhccCCCCCcCEEEccCCcCCc----CCCccc----cCCCCCCEEECcCCcCCC
Q 047519 311 LSTTEAEYMAITKAVK-----EAIWLQVFVRGRRHYAEPHFSSNQLSG----SIPSSV----YELENLILLRLPSNRLSG 377 (892)
Q Consensus 311 L~l~~~~~n~l~~~~p-----~l~~l~l~~~~l~~L~~L~Ls~n~l~~----~~p~~l----~~l~~L~~L~L~~n~l~~ 377 (892)
|++. .|.+++.-- .+ .....+++++++.|.+.. .++..+ ....++++|.+.+|.++.
T Consensus 149 L~l~---~c~l~~~g~~~l~~~L-------~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~ 218 (478)
T KOG4308|consen 149 LELV---SCSLTSEGAAPLAAVL-------EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS 218 (478)
T ss_pred HHhh---cccccccchHHHHHHH-------hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh
Confidence 7777 666654322 44 457778888888887631 122222 246677778887777652
Q ss_pred ccC---hhhcCCCCC-CCEEEcccCCCCCCcccc---CCCCC-CCccEEEccCCCCC-----CcchhhhCCCCccEEEcc
Q 047519 378 TTE---LYDFAKLKN-LKWLFVSNNRLSLSTKLK---VNSSF-PNLFGLGLSACNIS-----EFPDILRTLHQLQWFNLS 444 (892)
Q Consensus 378 ~~~---~~~~~~l~~-L~~L~Ls~n~l~~~~~~~---~~~~l-~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls 444 (892)
..- ...+...+. +..|++..|.+...+... ....+ +.++.++++.|.++ .+.+.+..++.++++.++
T Consensus 219 ~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 219 SSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred HHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcc
Confidence 110 023344444 566777777433222111 11122 45566777777666 234455556667777777
Q ss_pred CCCCCC
Q 047519 445 KNRIHG 450 (892)
Q Consensus 445 ~n~l~~ 450 (892)
+|.+..
T Consensus 299 ~n~l~~ 304 (478)
T KOG4308|consen 299 NNPLTD 304 (478)
T ss_pred cCcccc
Confidence 776653
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.24 E-value=0.0064 Score=70.42 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=18.1
Q ss_pred CCCccEEEccCCC-CC--CcchhhhCCCCccEEEccCCCC
Q 047519 412 FPNLFGLGLSACN-IS--EFPDILRTLHQLQWFNLSKNRI 448 (892)
Q Consensus 412 l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~Ls~n~l 448 (892)
+++|+.|.+.+|. ++ .+-.....++.|++|+++++..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4445555444443 33 2333444555566666665544
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.01 E-value=0.0056 Score=70.92 Aligned_cols=34 Identities=3% Similarity=-0.242 Sum_probs=16.9
Q ss_pred CCCCcEEEccCCCCCcC--CCccccCCCCCcEEecC
Q 047519 281 LDKRRSITGYVFNFAGG--PINWKSTLQSTVVLSTT 314 (892)
Q Consensus 281 l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~l~ 314 (892)
++.|+.|.+..+.-... +-.....++.|+.|+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 222 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLS 222 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheeccc
Confidence 55666666665533222 12233445566666665
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.00 E-value=0.012 Score=57.84 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=71.3
Q ss_pred hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 738 (892)
....+.||++.|++. ..-..|.-++.|..|+ ++.|++. ..|..++++..+..+++..|..+ ..|.++...+.++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~-~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLD-LSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHh-ccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 456778999999886 4555677788888998 9999998 88888999999999999999988 788999999999999
Q ss_pred ECCCCcCc
Q 047519 739 NLSYNQFE 746 (892)
Q Consensus 739 ~ls~N~l~ 746 (892)
++-.|.|.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99999875
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.49 E-value=0.13 Score=28.55 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=5.9
Q ss_pred CccEEEccCCCCCCcc
Q 047519 414 NLFGLGLSACNISEFP 429 (892)
Q Consensus 414 ~L~~L~L~~n~l~~lp 429 (892)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.56 E-value=0.17 Score=28.15 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=4.6
Q ss_pred CCCeeeCCCCcCC
Q 047519 710 EVESLDLSSNMLV 722 (892)
Q Consensus 710 ~L~~L~Ls~N~l~ 722 (892)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.55 E-value=0.007 Score=68.57 Aligned_cols=20 Identities=0% Similarity=-0.139 Sum_probs=13.6
Q ss_pred hhcCCCCCcEEEccCCCCCc
Q 047519 277 YIGDLDKRRSITGYVFNFAG 296 (892)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~ 296 (892)
.+..+++++++.++.|.+..
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhhhHHHHHhhcccCcccc
Confidence 55566677777777776654
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.52 E-value=0.012 Score=57.81 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=66.1
Q ss_pred CeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCC
Q 047519 64 GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRL 143 (892)
Q Consensus 64 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L 143 (892)
.||+.||++.+.+... .. .+.-++.|..||++-|.+.- +|..++.+..++++++..|..+ ..|.+++ .++++
T Consensus 42 kr~tvld~~s~r~vn~-~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~--k~~~~ 113 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNL-GK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQK--KEPHP 113 (326)
T ss_pred ceeeeehhhhhHHHhh-cc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCcccc--ccCCc
Confidence 4899999998877633 22 46778889999999988876 7888999999999999888776 7898888 88888
Q ss_pred ceecCCccc
Q 047519 144 STNYLPIFA 152 (892)
Q Consensus 144 ~~L~Ls~~~ 152 (892)
+++++..+.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 888887644
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.57 E-value=0.67 Score=28.90 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=8.5
Q ss_pred CCCCeeeCCCCcCC
Q 047519 709 TEVESLDLSSNMLV 722 (892)
Q Consensus 709 ~~L~~L~Ls~N~l~ 722 (892)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.57 E-value=0.67 Score=28.90 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=8.5
Q ss_pred CCCCeeeCCCCcCC
Q 047519 709 TEVESLDLSSNMLV 722 (892)
Q Consensus 709 ~~L~~L~Ls~N~l~ 722 (892)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.20 E-value=0.25 Score=47.96 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=56.2
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCC-cccc-CCCCCcEEEccCC-CCCCCcchhccCCCCCCEE
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP-LSLV-NCHHLEVLDVGNN-QINDNFPNWLEILPELQVL 571 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~-~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L 571 (892)
.++.+|.++..|..+.-+.+.+++.++.|.+.+|.--+... +.+. -.++|+.|+|++| +|++..-.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 67788888888877766777788888888888775332110 0111 2468888888877 6777666777788888888
Q ss_pred EccC
Q 047519 572 ILRS 575 (892)
Q Consensus 572 ~L~~ 575 (892)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7754
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.90 E-value=1.6 Score=27.19 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=8.9
Q ss_pred CCCcEEEccCCCCCCC
Q 047519 542 HHLEVLDVGNNQINDN 557 (892)
Q Consensus 542 ~~L~~L~L~~N~l~~~ 557 (892)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4555566666655553
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.90 E-value=1.6 Score=27.19 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=8.9
Q ss_pred CCCcEEEccCCCCCCC
Q 047519 542 HHLEVLDVGNNQINDN 557 (892)
Q Consensus 542 ~~L~~L~L~~N~l~~~ 557 (892)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4555566666655553
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.69 E-value=0.45 Score=46.26 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=42.3
Q ss_pred CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCcccc--CCC-CCCCccEEEccCC-CCCC-cchhhhCCCCc
Q 047519 364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLK--VNS-SFPNLFGLGLSAC-NISE-FPDILRTLHQL 438 (892)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~-~l~~L~~L~L~~n-~l~~-lp~~l~~l~~L 438 (892)
.++.+|-++..|..+-- +.+.+++.++.|.+.+| ...+..- ... ..++|+.|++++| +|++ --..+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~c--k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANC--KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHH-HHHhccchhhhheeccc--cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 45566666666553222 45556666666666665 2222111 011 3566667776666 4442 22456667777
Q ss_pred cEEEccCC
Q 047519 439 QWFNLSKN 446 (892)
Q Consensus 439 ~~L~Ls~n 446 (892)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 77766543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.11 E-value=0.74 Score=28.08 Aligned_cols=15 Identities=60% Similarity=0.846 Sum_probs=6.8
Q ss_pred CCCcEEEccCCCCCC
Q 047519 542 HHLEVLDVGNNQIND 556 (892)
Q Consensus 542 ~~L~~L~L~~N~l~~ 556 (892)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.06 E-value=3.9 Score=25.63 Aligned_cols=15 Identities=53% Similarity=0.702 Sum_probs=10.2
Q ss_pred CCCCCeeeCCCCcCC
Q 047519 708 LTEVESLDLSSNMLV 722 (892)
Q Consensus 708 l~~L~~L~Ls~N~l~ 722 (892)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.93 E-value=4.1 Score=25.46 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=12.5
Q ss_pred CCccEEEccCCCCCCcch
Q 047519 413 PNLFGLGLSACNISEFPD 430 (892)
Q Consensus 413 ~~L~~L~L~~n~l~~lp~ 430 (892)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456777777777777765
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.00 E-value=71 Score=35.69 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=14.5
Q ss_pred CccEEEccCCCCCCCCchhhh
Q 047519 437 QLQWFNLSKNRIHGRISSWMW 457 (892)
Q Consensus 437 ~L~~L~Ls~n~l~~~~~~~~~ 457 (892)
.+.+++++.|.....+|..+.
T Consensus 215 ~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred cccccccccCCCCccchhHHH
Confidence 467778888777777765543
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.24 E-value=6.5 Score=44.33 Aligned_cols=43 Identities=26% Similarity=0.089 Sum_probs=18.8
Q ss_pred hCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCC
Q 047519 433 RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT 475 (892)
Q Consensus 433 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 475 (892)
...|+|+.|+|++|...-....++...+...|++|-+.+|++.
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3445566666666622111122233332244555555555544
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.71 E-value=8.4 Score=24.52 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=8.2
Q ss_pred CCCCeeeCCCCcCC
Q 047519 709 TEVESLDLSSNMLV 722 (892)
Q Consensus 709 ~~L~~L~Ls~N~l~ 722 (892)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666654
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.65 E-value=6.6 Score=44.31 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=9.7
Q ss_pred CccEEEccCCCCCCC
Q 047519 437 QLQWFNLSKNRIHGR 451 (892)
Q Consensus 437 ~L~~L~Ls~n~l~~~ 451 (892)
.|++|-+.+|.+...
T Consensus 271 ~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTT 285 (585)
T ss_pred CHHHeeecCCccccc
Confidence 466777777776543
No 93
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=53.72 E-value=14 Score=25.86 Aligned_cols=20 Identities=5% Similarity=-0.096 Sum_probs=8.4
Q ss_pred EEeeeeeeeehhhhhhHhhh
Q 047519 807 AKMGYGSGLVIGLSIGYIVF 826 (892)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~ 826 (892)
+++|+++.+++.++++.+++
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l 32 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFL 32 (40)
T ss_pred EEEEEEechHHHHHHHHHHh
Confidence 44444444444444333333
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.40 E-value=35 Score=37.96 Aligned_cols=109 Identities=19% Similarity=0.050 Sum_probs=58.4
Q ss_pred cccEEECCCCccCcccccc--ccCCCCCCEEEccCCCCC-----CCCCc--cc--cCCCCCcEEEccCCCCCCCcch---
Q 047519 495 THKVLDMRMNNFNGKISQK--FVNSCNLTNLNLNGNRLE-----GPLPL--SL--VNCHHLEVLDVGNNQINDNFPN--- 560 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~-----~~~p~--~l--~~l~~L~~L~L~~N~l~~~~p~--- 560 (892)
.++++....|++.|..-.. ...-+..+.+++..-.-. +.... .. ..-.-+..+.++.|.+....-.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 6788888888887654432 223345666666543220 00000 00 0112366788888887653322
Q ss_pred hccCCCCCCEEEccCCcCCC----CCCCCCCCcCCCCccEEEcCCCCCc
Q 047519 561 WLEILPELQVLILRSNRFWG----PIGDNTTIVPFPRFRIIDLSHNEFT 605 (892)
Q Consensus 561 ~~~~l~~L~~L~L~~N~l~~----~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (892)
....-+.+..|++++|.... .+|... ..-..++.+..+.|...
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkal--q~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKAL--QSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCcccc--CCCCccCCCCCCCCCcc
Confidence 23345688999999998632 122222 23345666666666554
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.62 E-value=21 Score=48.45 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=29.4
Q ss_pred ccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC
Q 047519 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH 724 (892)
Q Consensus 691 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 724 (892)
||++|+|+...+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 4899999977788899999999999999988754
No 96
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=30.54 E-value=17 Score=33.80 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=2.7
Q ss_pred eeeeeee
Q 047519 809 MGYGSGL 815 (892)
Q Consensus 809 ~~~~~~~ 815 (892)
||++||+
T Consensus 52 IGvVVGV 58 (154)
T PF04478_consen 52 IGVVVGV 58 (154)
T ss_pred EEEEecc
Confidence 3433333
No 97
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=29.83 E-value=18 Score=28.10 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred eeeeeeehhhhhhHhh
Q 047519 810 GYGSGLVIGLSIGYIV 825 (892)
Q Consensus 810 ~~~~~~~~~~~~~~~~ 825 (892)
|++++++++++++.++
T Consensus 17 G~Vvgll~ailLIlf~ 32 (64)
T PF01034_consen 17 GGVVGLLFAILLILFL 32 (64)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.37 E-value=40 Score=20.85 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=8.8
Q ss_pred CCCCCeEeCCCCC
Q 047519 114 LRSLTLLNLSSSN 126 (892)
Q Consensus 114 l~~L~~L~Ls~n~ 126 (892)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777764
No 99
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=26.62 E-value=74 Score=31.52 Aligned_cols=13 Identities=8% Similarity=-0.238 Sum_probs=5.3
Q ss_pred CCCEEecCCccCc
Q 047519 170 LEEEIYMTQLDGF 182 (892)
Q Consensus 170 ~L~~L~L~~~~~~ 182 (892)
+++--.|.+|++.
T Consensus 197 N~eGA~L~gcNfe 209 (302)
T KOG1665|consen 197 NAEGASLKGCNFE 209 (302)
T ss_pred ccccccccCcCCC
Confidence 3333334444443
No 100
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.20 E-value=51 Score=45.12 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=29.1
Q ss_pred ecCCCcCCCCChhhhcCccccccccccCCCCCC
Q 047519 666 DLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT 698 (892)
Q Consensus 666 dLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~ 698 (892)
||++|+|+...+..|..+.+|+.|+ |++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~Ld-LsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEID-LSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEE-eeCCccc
Confidence 7899999977777889999999999 9999987
Done!