Query 047519
Match_columns 892
No_of_seqs 1010 out of 5526
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.2E-91 1.8E-95 849.0 42.5 703 1-783 4-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 8E-68 2.7E-72 644.8 34.7 600 66-747 79-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.3E-58 2.9E-62 551.6 47.1 573 90-751 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-57 7.2E-62 548.1 44.7 585 93-773 7-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-57 7.8E-62 558.5 37.3 566 70-788 10-598 (844)
6 3t6q_A CD180 antigen; protein- 100.0 4.3E-53 1.5E-57 503.5 42.1 532 70-751 18-565 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.6E-51 5.6E-56 489.9 39.6 520 64-726 33-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 8.1E-52 2.8E-56 492.6 35.9 529 69-751 16-563 (606)
9 4eco_A Uncharacterized protein 100.0 1.2E-52 3.9E-57 499.6 24.1 509 5-607 26-602 (636)
10 4ecn_A Leucine-rich repeat pro 100.0 1.6E-50 5.6E-55 488.1 34.4 492 2-609 262-844 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 2E-50 7E-55 496.6 33.3 525 52-726 14-564 (844)
12 3vq2_A TLR4, TOLL-like recepto 100.0 5E-50 1.7E-54 477.1 34.9 518 64-726 32-562 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 8.7E-47 3E-51 443.7 34.0 493 51-751 3-515 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 1.7E-46 5.9E-51 443.4 30.3 494 90-753 28-538 (570)
15 4eco_A Uncharacterized protein 100.0 5.5E-46 1.9E-50 442.1 20.2 451 194-747 81-601 (636)
16 2z63_A TOLL-like receptor 4, v 100.0 5.8E-44 2E-48 421.8 37.1 485 64-611 28-537 (570)
17 4g8a_A TOLL-like receptor 4; l 100.0 8.5E-44 2.9E-48 426.1 35.1 563 35-750 6-584 (635)
18 2z81_A CD282 antigen, TOLL-lik 100.0 7.5E-44 2.6E-48 418.7 29.1 485 92-773 7-514 (549)
19 4ecn_A Leucine-rich repeat pro 100.0 1.1E-43 3.6E-48 428.7 27.2 442 194-749 323-843 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-43 3.7E-48 414.3 23.5 446 169-751 21-486 (520)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-42 6E-47 404.1 27.5 453 68-611 4-487 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.5E-41 1.2E-45 403.4 33.7 534 93-773 34-584 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-41 1.3E-45 396.1 25.6 494 90-780 31-546 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-40 1E-44 388.5 26.3 453 67-726 34-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.4E-39 4.9E-44 370.0 25.7 429 85-732 6-439 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 2.9E-39 9.9E-44 367.5 24.7 341 113-605 9-350 (454)
27 1ogq_A PGIP-2, polygalacturona 100.0 6.8E-40 2.3E-44 354.9 17.9 293 4-398 1-301 (313)
28 3v47_A TOLL-like receptor 5B a 100.0 7.3E-38 2.5E-42 358.7 29.6 392 286-755 14-417 (455)
29 3v47_A TOLL-like receptor 5B a 100.0 3.1E-36 1.1E-40 345.1 32.7 357 194-610 30-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-35 8.3E-40 335.5 24.5 356 277-752 37-393 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-34 7.7E-39 327.5 29.5 316 278-731 81-396 (457)
32 1o6v_A Internalin A; bacterial 100.0 3.7E-34 1.2E-38 328.4 31.2 346 280-747 44-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 8.7E-34 3E-38 325.3 32.6 347 258-728 44-393 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 9.3E-35 3.2E-39 334.8 24.0 348 342-774 14-361 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 5.4E-33 1.8E-37 320.1 22.9 345 309-751 14-361 (477)
36 1ogq_A PGIP-2, polygalacturona 100.0 6.7E-34 2.3E-38 307.8 12.2 234 495-778 77-312 (313)
37 3o6n_A APL1; leucine-rich repe 100.0 6.4E-32 2.2E-36 302.5 28.1 349 41-508 2-353 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 5.1E-32 1.7E-36 303.3 23.3 333 337-772 43-377 (390)
39 3oja_B Anopheles plasmodium-re 100.0 2.4E-31 8E-36 314.4 28.9 348 41-509 8-360 (597)
40 3oja_B Anopheles plasmodium-re 100.0 9.7E-32 3.3E-36 317.7 23.8 334 337-773 49-384 (597)
41 4fmz_A Internalin; leucine ric 100.0 5.7E-31 1.9E-35 290.0 28.2 306 336-746 41-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 1.5E-30 5.1E-35 286.6 29.6 307 302-722 40-346 (347)
43 4fcg_A Uncharacterized protein 100.0 1.3E-31 4.5E-36 291.5 14.1 276 4-373 22-311 (328)
44 1xku_A Decorin; proteoglycan, 100.0 1.9E-28 6.5E-33 267.6 27.2 125 340-474 32-157 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.6E-33 269.0 23.6 126 340-475 34-160 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-28 8.9E-33 266.7 24.4 267 413-744 54-331 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-32 1.1E-36 312.2 -7.4 288 414-747 86-412 (461)
48 1xku_A Decorin; proteoglycan, 100.0 1.1E-27 3.6E-32 261.7 27.2 269 282-603 52-330 (330)
49 1z7x_W Ribonuclease inhibitor; 100.0 5.6E-32 1.9E-36 310.3 -10.2 385 282-748 3-442 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 3.4E-28 1.2E-32 268.2 16.0 281 411-751 29-319 (353)
51 3ogk_B Coronatine-insensitive 100.0 1.7E-30 5.9E-35 307.9 -4.3 458 50-602 40-548 (592)
52 2z66_A Variable lymphocyte rec 99.9 3.5E-27 1.2E-31 254.6 19.7 252 342-609 10-265 (306)
53 2z66_A Variable lymphocyte rec 99.9 5E-27 1.7E-31 253.5 17.9 208 495-750 53-265 (306)
54 3zyi_A Leucine-rich repeat-con 99.9 5.5E-26 1.9E-30 259.3 23.0 232 463-750 76-307 (452)
55 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-26 8.1E-31 245.4 16.8 210 495-751 33-243 (285)
56 3zyj_A Leucine-rich repeat-con 99.9 8.6E-26 2.9E-30 256.8 22.4 233 462-750 64-296 (440)
57 3ogk_B Coronatine-insensitive 99.9 3.9E-29 1.3E-33 296.3 -5.5 433 230-743 67-548 (592)
58 4fcg_A Uncharacterized protein 99.9 2.3E-26 7.7E-31 250.2 16.7 201 495-746 105-314 (328)
59 1ozn_A Reticulon 4 receptor; N 99.9 5.9E-26 2E-30 242.3 16.7 234 463-752 33-267 (285)
60 3zyj_A Leucine-rich repeat-con 99.9 1.9E-25 6.4E-30 254.0 21.9 252 463-773 44-296 (440)
61 3g06_A SSPH2 (leucine-rich rep 99.9 1E-24 3.4E-29 255.2 28.3 262 364-751 41-302 (622)
62 2z80_A TOLL-like receptor 2, v 99.9 3E-26 1E-30 252.7 14.4 278 434-773 29-318 (353)
63 3zyi_A Leucine-rich repeat-con 99.9 2.2E-25 7.5E-30 254.3 22.0 252 464-774 56-308 (452)
64 1wwl_A Monocyte differentiatio 99.9 7.4E-28 2.5E-32 260.4 0.8 205 495-747 96-310 (312)
65 3g06_A SSPH2 (leucine-rich rep 99.9 6.6E-25 2.3E-29 256.7 24.9 269 339-733 40-308 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-27 6.3E-32 257.9 2.4 267 415-751 12-281 (317)
67 1wwl_A Monocyte differentiatio 99.9 6.1E-27 2.1E-31 253.2 3.6 248 413-724 43-311 (312)
68 3oja_A Leucine-rich immune mol 99.9 9E-26 3.1E-30 259.0 8.1 226 427-746 21-250 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 1.7E-23 5.7E-28 222.2 20.4 210 495-752 29-243 (276)
70 3oja_A Leucine-rich immune mol 99.9 9.1E-25 3.1E-29 250.6 10.0 217 495-772 35-253 (487)
71 2p1m_B Transport inhibitor res 99.9 8.1E-27 2.8E-31 276.5 -8.8 438 230-745 60-543 (594)
72 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-24 4.3E-29 235.6 9.1 237 336-624 31-269 (317)
73 2p1m_B Transport inhibitor res 99.9 5.4E-26 1.8E-30 269.4 -3.9 439 50-605 33-519 (594)
74 2o6q_A Variable lymphocyte rec 99.9 2.1E-22 7.3E-27 212.7 23.2 206 495-750 17-222 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 1.5E-22 5.1E-27 214.8 19.8 211 463-726 29-241 (276)
76 1p9a_G Platelet glycoprotein I 99.9 5.8E-22 2E-26 211.2 19.0 201 494-748 10-210 (290)
77 3rfs_A Internalin B, repeat mo 99.9 6E-22 2E-26 209.5 18.3 160 432-605 59-218 (272)
78 4glp_A Monocyte differentiatio 99.9 5.8E-22 2E-26 214.0 18.1 205 496-747 93-308 (310)
79 3rfs_A Internalin B, repeat mo 99.9 4.2E-22 1.4E-26 210.6 16.3 200 495-752 42-241 (272)
80 2o6q_A Variable lymphocyte rec 99.9 3.7E-21 1.3E-25 203.1 23.5 205 463-725 17-221 (270)
81 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.8E-26 208.3 19.9 205 514-772 6-211 (290)
82 3m19_A Variable lymphocyte rec 99.9 1.2E-21 4.2E-26 204.5 17.2 212 519-781 15-232 (251)
83 2ca6_A RAN GTPase-activating p 99.8 1.7E-23 5.7E-28 233.7 -3.6 253 427-750 23-320 (386)
84 3goz_A Leucine-rich repeat-con 99.8 2.1E-22 7.1E-27 222.5 1.8 156 419-580 4-181 (362)
85 3goz_A Leucine-rich repeat-con 99.8 1.1E-22 3.6E-27 224.8 -0.7 260 440-750 2-301 (362)
86 4glp_A Monocyte differentiatio 99.8 2.2E-21 7.7E-26 209.3 9.2 207 462-723 91-308 (310)
87 2xwt_C Thyrotropin receptor; s 99.8 1.3E-20 4.6E-25 195.1 14.0 196 495-743 32-236 (239)
88 2ast_B S-phase kinase-associat 99.8 7.6E-22 2.6E-26 215.8 3.4 253 437-752 48-312 (336)
89 3m19_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 188.8 20.2 182 413-608 14-195 (251)
90 1h6u_A Internalin H; cell adhe 99.8 7.2E-20 2.5E-24 197.0 17.5 190 495-747 42-231 (308)
91 2ast_B S-phase kinase-associat 99.8 5.9E-21 2E-25 208.8 4.9 252 283-586 48-313 (336)
92 2xwt_C Thyrotropin receptor; s 99.8 2.2E-19 7.4E-24 185.9 15.7 78 495-576 156-236 (239)
93 3cvr_A Invasion plasmid antige 99.8 1.9E-19 6.5E-24 207.8 16.6 186 463-731 60-252 (571)
94 2ca6_A RAN GTPase-activating p 99.8 5.1E-21 1.7E-25 213.5 3.4 96 513-609 211-320 (386)
95 4ay9_X Follicle-stimulating ho 99.8 2E-19 7E-24 197.4 16.1 239 416-743 12-256 (350)
96 1h6u_A Internalin H; cell adhe 99.8 4.1E-19 1.4E-23 191.1 17.3 194 360-606 38-231 (308)
97 4ay9_X Follicle-stimulating ho 99.8 5E-19 1.7E-23 194.3 15.6 241 391-720 12-257 (350)
98 2o6s_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 176.0 17.1 109 496-606 30-138 (208)
99 2o6s_A Variable lymphocyte rec 99.8 2E-18 6.8E-23 174.5 18.4 181 497-734 10-190 (208)
100 3cvr_A Invasion plasmid antige 99.8 8.2E-19 2.8E-23 202.5 15.7 196 437-710 60-255 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 7.3E-19 2.5E-23 179.1 10.5 158 545-751 14-171 (220)
102 2v9t_B SLIT homolog 2 protein 99.7 3.7E-18 1.3E-22 173.9 10.5 91 659-750 79-169 (220)
103 1h6t_A Internalin B; cell adhe 99.7 1.4E-17 4.8E-22 177.5 14.7 172 515-747 43-214 (291)
104 2xot_A Amphoterin-induced prot 99.7 8.8E-18 3E-22 185.1 11.5 178 521-748 21-204 (361)
105 3e6j_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 166.6 16.3 90 659-750 87-176 (229)
106 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.5E-22 194.0 13.5 171 516-747 41-211 (605)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 8.9E-17 3.1E-21 163.6 15.1 116 495-612 58-173 (220)
108 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.9E-21 162.1 14.8 137 462-608 32-168 (220)
109 2xot_A Amphoterin-induced prot 99.7 6.2E-17 2.1E-21 178.3 12.9 179 465-698 21-202 (361)
110 1h6t_A Internalin B; cell adhe 99.7 1.7E-16 5.9E-21 169.0 15.1 188 365-605 26-213 (291)
111 1m9s_A Internalin B; cell inva 99.7 1.8E-16 6.2E-21 185.1 16.2 151 432-606 61-211 (605)
112 1w8a_A SLIT protein; signaling 99.7 3E-17 1E-21 163.3 8.2 156 569-773 11-166 (192)
113 3e6j_A Variable lymphocyte rec 99.7 3.7E-16 1.3E-20 160.1 16.6 156 415-609 21-176 (229)
114 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5.2E-22 199.3 7.0 227 436-750 173-408 (727)
115 1dce_A Protein (RAB geranylger 99.7 1.8E-19 6E-24 209.4 -10.0 204 112-394 346-566 (567)
116 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.8E-21 160.0 10.4 84 659-747 111-195 (197)
117 1xeu_A Internalin C; cellular 99.7 8.3E-17 2.8E-21 168.7 9.0 168 519-748 20-187 (263)
118 1dce_A Protein (RAB geranylger 99.6 9.1E-19 3.1E-23 203.4 -9.1 140 411-580 347-500 (567)
119 1xeu_A Internalin C; cellular 99.6 2E-16 6.7E-21 165.8 9.5 168 495-724 20-187 (263)
120 4ezg_A Putative uncharacterize 99.6 9.2E-16 3.2E-20 153.3 13.0 150 412-578 43-193 (197)
121 4b8c_D Glucose-repressible alc 99.6 1.9E-16 6.4E-21 189.9 7.2 226 411-722 171-404 (727)
122 1w8a_A SLIT protein; signaling 99.6 9E-15 3.1E-19 145.3 14.9 114 495-610 30-144 (192)
123 3sb4_A Hypothetical leucine ri 99.6 2.7E-15 9.2E-20 163.0 9.9 258 281-572 48-327 (329)
124 2ell_A Acidic leucine-rich nuc 99.6 1.1E-14 3.8E-19 141.3 10.9 63 542-608 24-87 (168)
125 2ell_A Acidic leucine-rich nuc 99.5 1E-14 3.5E-19 141.6 9.4 138 564-751 22-164 (168)
126 2wfh_A SLIT homolog 2 protein 99.5 1.2E-14 4E-19 144.5 9.6 131 569-750 13-143 (193)
127 2o6r_A Variable lymphocyte rec 99.5 6.6E-14 2.3E-18 137.1 12.9 92 659-751 51-142 (177)
128 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7.3E-19 136.3 8.4 80 661-741 65-148 (149)
129 2o6r_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 132.2 15.4 133 464-609 9-141 (177)
130 3sb4_A Hypothetical leucine ri 99.5 1.8E-14 6E-19 156.5 6.7 201 517-746 100-310 (329)
131 2wfh_A SLIT homolog 2 protein 99.5 3.3E-13 1.1E-17 133.9 15.1 134 465-612 13-146 (193)
132 2je0_A Acidic leucine-rich nuc 99.5 1.6E-13 5.3E-18 130.2 10.3 128 336-470 14-148 (149)
133 3g39_A Variable lymphocyte rec 99.4 2.1E-13 7.2E-18 132.4 10.6 92 659-751 29-120 (170)
134 2r9u_A Variable lymphocyte rec 99.4 6.9E-13 2.4E-17 129.2 10.5 91 659-750 32-122 (174)
135 1ds9_A Outer arm dynein; leuci 99.4 2.3E-15 8E-20 150.5 -8.2 132 561-746 43-185 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.4 6.3E-13 2.1E-17 130.0 8.9 63 538-605 15-77 (176)
137 4fdw_A Leucine rich hypothetic 99.4 2.4E-11 8.1E-16 134.8 21.3 89 510-603 292-381 (401)
138 1ds9_A Outer arm dynein; leuci 99.3 4.6E-15 1.6E-19 148.3 -9.0 156 514-723 14-186 (198)
139 4fdw_A Leucine rich hypothetic 99.3 6.5E-11 2.2E-15 131.3 23.0 216 341-578 159-382 (401)
140 1a9n_A U2A', U2A'; complex (nu 99.3 2E-12 6.9E-17 126.3 8.7 91 513-605 59-153 (176)
141 3g39_A Variable lymphocyte rec 99.3 1.6E-11 5.6E-16 119.0 13.1 110 495-609 10-119 (170)
142 4fs7_A Uncharacterized protein 99.3 1.2E-10 4.1E-15 129.6 19.0 217 336-576 68-286 (394)
143 2r9u_A Variable lymphocyte rec 99.3 4E-11 1.4E-15 116.6 13.1 107 497-608 15-121 (174)
144 4fs7_A Uncharacterized protein 99.2 8.9E-10 3E-14 122.5 22.3 234 336-597 159-393 (394)
145 2ifg_A High affinity nerve gro 99.1 6.7E-11 2.3E-15 129.3 8.4 86 660-747 31-117 (347)
146 3un9_A NLR family member X1; l 99.1 1.3E-12 4.4E-17 143.5 -6.5 87 660-747 155-253 (372)
147 3un9_A NLR family member X1; l 99.0 1.2E-11 4.1E-16 135.8 -2.6 160 281-450 71-253 (372)
148 2ifg_A High affinity nerve gro 99.0 1.2E-09 4.3E-14 119.1 11.8 113 497-614 11-125 (347)
149 4gt6_A Cell surface protein; l 98.9 6.6E-08 2.3E-12 107.3 23.4 111 273-398 54-170 (394)
150 4gt6_A Cell surface protein; l 98.9 1.7E-07 5.7E-12 104.1 22.6 127 255-398 58-192 (394)
151 2ra8_A Uncharacterized protein 98.6 3.5E-09 1.2E-13 115.1 -0.5 16 707-722 305-320 (362)
152 4h09_A Hypothetical leucine ri 98.6 1.1E-06 3.9E-11 96.7 18.9 37 537-574 212-248 (379)
153 2ra8_A Uncharacterized protein 98.6 2.1E-08 7.3E-13 108.9 4.3 164 510-720 164-341 (362)
154 4h09_A Hypothetical leucine ri 98.5 1.5E-05 5.2E-10 87.7 23.4 103 495-602 241-343 (379)
155 3rw6_A Nuclear RNA export fact 98.2 2.1E-07 7.1E-12 95.8 1.1 90 659-751 140-238 (267)
156 3rw6_A Nuclear RNA export fact 98.1 9.4E-07 3.2E-11 90.9 4.0 80 657-739 167-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.1 4.3E-07 1.5E-11 88.8 0.2 118 86-209 32-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.1 9E-07 3.1E-11 86.5 2.1 124 108-249 29-164 (185)
159 3e4g_A ATP synthase subunit S, 97.5 2.5E-05 8.4E-10 74.4 1.5 34 519-552 62-95 (176)
160 3e4g_A ATP synthase subunit S, 97.4 3.3E-05 1.1E-09 73.5 0.5 83 495-577 62-150 (176)
161 3rfe_A Platelet glycoprotein I 96.5 0.0032 1.1E-07 56.9 5.8 57 688-747 12-69 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00093 3.2E-08 64.7 2.1 11 435-445 40-50 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0014 4.9E-08 63.4 2.1 62 337-399 39-109 (197)
164 3rfe_A Platelet glycoprotein I 95.9 0.0071 2.4E-07 54.6 5.1 58 663-723 11-69 (130)
165 2lz0_A Uncharacterized protein 29.1 64 0.0022 26.7 4.7 40 535-575 13-52 (100)
166 2lz0_A Uncharacterized protein 27.2 74 0.0025 26.3 4.7 46 506-552 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.2e-91 Score=849.00 Aligned_cols=703 Identities=25% Similarity=0.327 Sum_probs=616.3
Q ss_pred CCCCCCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCCCCccccceEecCCCCeEEEEECCCCCCCCC-
Q 047519 1 CSAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGN- 79 (892)
Q Consensus 1 ~~~~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~- 79 (892)
|.++.+.++||+|||+||+++.++ . ++++|+.+++||+|+||+|+ +|||++|||++.++.|.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~--------------~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~ 66 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDK--------------N-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGF 66 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCT--------------T-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEH
T ss_pred CccccCCHHHHHHHHHHHhhCCCc--------------c-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCcc
Confidence 567778899999999999999755 2 78999988899999999998 58999999999999998
Q ss_pred --CCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCC--CCCcccCCCCceecCCcccCCc
Q 047519 80 --IPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPA--SIDLINVSRLSTNYLPIFAFSD 155 (892)
Q Consensus 80 --~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~--~l~~~~L~~L~~L~Ls~~~~~~ 155 (892)
+++ ++.++++|+.++++.+.+.. +|+.|+++++|++|||++|.+.|.+|. .++ ++++|++|+|+++...+
T Consensus 67 ~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~--~l~~L~~L~Ls~n~l~~ 140 (768)
T 3rgz_A 67 SAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG--SCSGLKFLNVSSNTLDF 140 (768)
T ss_dssp HHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG--GCTTCCEEECCSSEEEC
T ss_pred CccCh--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHh--CCCCCCEEECcCCccCC
Confidence 887 89999999999999998754 678999999999999999999999998 899 99999999999988788
Q ss_pred chhhhh-hcccCCCCCCCEEecCCccCccccccc----CCCCCCcccEEEccCCCCcCccCChhHHHHhhhccccccccc
Q 047519 156 CFQLDV-KTTFLHDDLEEEIYMTQLDGFKVAEKE----NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMK 230 (892)
Q Consensus 156 ~~p~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~----~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~ 230 (892)
.+|..+ . ++++|++|+|++|.+.+..+.. .++ ++|++|++++| .+++..|
T Consensus 141 ~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l--~~L~~L~Ls~n--~l~~~~~----------------- 195 (768)
T 3rgz_A 141 PGKVSGGL----KLNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGN--KISGDVD----------------- 195 (768)
T ss_dssp CSSCCSCC----CCTTCSEEECCSSCCEEETHHHHHHTTCC--TTCCEEECCSS--EEESCCB-----------------
T ss_pred cCCHHHhc----cCCCCCEEECCCCccCCcCChhhhhhccC--CCCCEEECCCC--cccccCC-----------------
Confidence 888765 6 8999999999999998877653 778 99999999999 8887755
Q ss_pred ccccCCCCCEEEcccCCCCCcCCccccCCCCcceec---ccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCC
Q 047519 231 DLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLG---QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQS 307 (892)
Q Consensus 231 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~---~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 307 (892)
+..+++|++|++++|.+.+.+|. ++++++|++|+ +.+.+.+|. .+.++++|++|++++|.+.+.+|.. .+++
T Consensus 196 -~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~ 270 (768)
T 3rgz_A 196 -VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL--PLKS 270 (768)
T ss_dssp -CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC--CCTT
T ss_pred -cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc--ccCC
Confidence 47899999999999999998887 99999999999 888889998 9999999999999999999988875 8999
Q ss_pred CcEEecCccccccceeecc-chhhhhhccCC-CCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcC
Q 047519 308 TVVLSTTEAEYMAITKAVK-EAIWLQVFVRG-RRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFA 385 (892)
Q Consensus 308 L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~-l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 385 (892)
|++|+++ +|.+++.+| .+ .. +++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|...+.
T Consensus 271 L~~L~L~---~n~l~~~ip~~~-------~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 271 LQYLSLA---ENKFTGEIPDFL-------SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp CCEEECC---SSEEEESCCCCS-------CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred CCEEECc---CCccCCccCHHH-------HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence 9999999 999999999 66 55 499999999999999999999999999999999999999889966699
Q ss_pred CCCCCCEEEcccCCCCCCccccCCC-CCC-CccEEEccCCCCC-CcchhhhC--CCCccEEEccCCCCCCCCchhhhhhC
Q 047519 386 KLKNLKWLFVSNNRLSLSTKLKVNS-SFP-NLFGLGLSACNIS-EFPDILRT--LHQLQWFNLSKNRIHGRISSWMWDLG 460 (892)
Q Consensus 386 ~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~-~L~~L~L~~n~l~-~lp~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~ 460 (892)
.+++|++|++++| .+.+.+|... .++ +|++|++++|.++ .+|..+.. +++|++|++++|.+++.+|..+..+
T Consensus 341 ~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l- 417 (768)
T 3rgz_A 341 KMRGLKVLDLSFN--EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC- 417 (768)
T ss_dssp TCTTCCEEECCSS--EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-
T ss_pred cCCCCCEEeCcCC--ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-
Confidence 9999999999999 6677777776 565 9999999999998 67777766 8899999999999999999999988
Q ss_pred CCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccC
Q 047519 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVN 540 (892)
Q Consensus 461 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 540 (892)
++|++|++++|++++..|..+..+. +|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.+
T Consensus 418 -~~L~~L~Ls~N~l~~~~p~~l~~l~--------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 418 -SELVSLHLSFNYLSGTIPSSLGSLS--------KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp -TTCCEEECCSSEEESCCCGGGGGCT--------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred -CCCCEEECcCCcccCcccHHHhcCC--------CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 9999999999999999888777766 8999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhh
Q 047519 541 CHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM 620 (892)
Q Consensus 541 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~ 620 (892)
+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+ ..+++|++|++++|+++|.+|..++. ...+.
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~ 565 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKI 565 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGT-TTTCB
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhc-ccchh
Confidence 9999999999999999999999999999999999999999999887 89999999999999999999987543 22222
Q ss_pred cccCCC-ccccccCCCCC--------------------------CCccceEEEEEccchhhHHHhhhhheeeecCCCcCC
Q 047519 621 HGNNNS-VEVDYMTPLNS--------------------------SNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ 673 (892)
Q Consensus 621 ~l~~~~-~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 673 (892)
...... ....++..... ..........+++.....+..++.|+.|||++|+++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 222111 11111100000 000000000111222222334688999999999999
Q ss_pred CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCC
Q 047519 674 GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753 (892)
Q Consensus 674 ~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 753 (892)
|.+|.++++++.|+.|+ |++|+++|.+|..|+++++|++|||++|+++|.+|..|..+++|++||+++|+++|.||.++
T Consensus 646 g~ip~~l~~l~~L~~L~-Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILN-LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp SCCCGGGGGCTTCCEEE-CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred ccCCHHHhccccCCEEe-CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCccCCCCCCCCCCCCCCCCCCCC
Q 047519 754 QFNTFRNDSYVGNSGLCGFPLLESCNIDEA 783 (892)
Q Consensus 754 ~~~~~~~~~~~gN~~lc~~~~~~~c~~~~~ 783 (892)
+|.+|...+|.|||++||.|+. .|.....
T Consensus 725 ~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp SGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred hhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 9999999999999999999987 8976543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8e-68 Score=644.82 Aligned_cols=600 Identities=22% Similarity=0.225 Sum_probs=505.6
Q ss_pred EEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCC--cCcCCCCCCeEeCCCCCCccccCCCC-CcccCCC
Q 047519 66 VIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISS--GFSQLRSLTLLNLSSSNFMGSIPASI-DLINVSR 142 (892)
Q Consensus 66 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~L~Ls~n~~~~~~p~~l-~~~~L~~ 142 (892)
+..++++.+++.. ++. .+..+++|++|||++|.+.+. +|. .++++++|++|+|++|.+.+.+|..+ + ++++
T Consensus 79 L~~l~~~~~~~~~-l~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~l~~ 152 (768)
T 3rgz_A 79 LESLFLSNSHING-SVS--GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNS 152 (768)
T ss_dssp CCEEECTTSCEEE-CCC--CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC--CCTT
T ss_pred ccccCCcCCCcCC-Cch--hhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhc--cCCC
Confidence 3445555544332 334 799999999999999999986 787 89999999999999999999999876 7 9999
Q ss_pred CceecCCcccCCcchhhh---hhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHh
Q 047519 143 LSTNYLPIFAFSDCFQLD---VKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKL 219 (892)
Q Consensus 143 L~~L~Ls~~~~~~~~p~~---l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l 219 (892)
|++|+++++.+.+..|.. +. ++++|++|++++|.+.+..+. ..+ ++|++|++++| .+++.+|
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~-~~l--~~L~~L~Ls~n--~l~~~~~------ 217 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSD----GCGELKHLAISGNKISGDVDV-SRC--VNLEFLDVSSN--NFSTGIP------ 217 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTT----CCTTCCEEECCSSEEESCCBC-TTC--TTCCEEECCSS--CCCSCCC------
T ss_pred CCEEECCCCccCCcCChhhhhhc----cCCCCCEEECCCCcccccCCc-ccC--CcCCEEECcCC--cCCCCCc------
Confidence 999999998878887776 66 999999999999999876554 778 99999999999 8988777
Q ss_pred hhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceec---ccceeecChhhhcCCCCCcEEEccCCCCCc
Q 047519 220 KTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLG---QSVNGYVDSDYIGDLDKRRSITGYVFNFAG 296 (892)
Q Consensus 220 ~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~---~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~ 296 (892)
. ++++++|++|++++|.+.+.+|..++++++|++|+ |.+.+.+|. . .+++|++|++++|.+++
T Consensus 218 ----------~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~--~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 218 ----------F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L--PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp ----------B-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C--CCTTCCEEECCSSEEEE
T ss_pred ----------c-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc-c--ccCCCCEEECcCCccCC
Confidence 5 89999999999999999999999999999999999 888888887 4 89999999999999999
Q ss_pred CCCccccCC-CCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCcc-ccCCCCCCEEECcCC
Q 047519 297 GPINWKSTL-QSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSS-VYELENLILLRLPSN 373 (892)
Q Consensus 297 ~~p~~l~~l-~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n 373 (892)
.+|..+... ++|++|+++ +|.+.+.+| .+ +++++|++|++++|.+++.+|.. +..+++|++|++++|
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls---~n~l~~~~p~~~-------~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLS---GNHFYGAVPPFF-------GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp SCCCCSCTTCTTCSEEECC---SSEEEECCCGGG-------GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred ccCHHHHhhcCcCCEEECc---CCcCCCccchHH-------hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 999988875 999999999 999999999 88 99999999999999999888876 999999999999999
Q ss_pred cCCCccChhhcCCCC-CCCEEEcccCCCCCCccccCCC-C--CCCccEEEccCCCCC-CcchhhhCCCCccEEEccCCCC
Q 047519 374 RLSGTTELYDFAKLK-NLKWLFVSNNRLSLSTKLKVNS-S--FPNLFGLGLSACNIS-EFPDILRTLHQLQWFNLSKNRI 448 (892)
Q Consensus 374 ~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~-~--l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l 448 (892)
.+++.+| ..+..++ +|++|++++| .+.+.++... . +++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 354 ~l~~~~p-~~l~~l~~~L~~L~Ls~N--~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 354 EFSGELP-ESLTNLSASLLTLDLSSN--NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp EEEECCC-TTHHHHTTTCSEEECCSS--EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred ccCcccc-HHHHhhhcCCcEEEccCC--CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 9998888 6777777 9999999999 6667666655 3 789999999999998 8899999999999999999999
Q ss_pred CCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCC
Q 047519 449 HGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGN 528 (892)
Q Consensus 449 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 528 (892)
++.+|..+..+ ++|+.|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..+++|++|++++|
T Consensus 431 ~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~--------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 431 SGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMYVK--------TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp ESCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGGCT--------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cCcccHHHhcC--CCCCEEECCCCcccCcCCHHHcCCC--------CceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 99999999988 9999999999999998887776665 8999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCC---------------
Q 047519 529 RLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPR--------------- 593 (892)
Q Consensus 529 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~--------------- 593 (892)
++++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+ .....
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~--~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG--GTTTTCBCCSTTCSCEEEEE
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH--hcccchhhhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999998887643 11111
Q ss_pred -------------------------------ccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccc
Q 047519 594 -------------------------------FRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYE 642 (892)
Q Consensus 594 -------------------------------L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (892)
++.++++.|.+.|.+|.. +++++.|+.++++.|.+..
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~-~~~l~~L~~LdLs~N~l~g----------- 646 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSG----------- 646 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS-CSSSBCCCEEECCSSCCBS-----------
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchh-hhccccccEEECcCCcccc-----------
Confidence 111122223333333322 2333333333333332110
Q ss_pred eEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCC
Q 047519 643 SIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLV 722 (892)
Q Consensus 643 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 722 (892)
.....+..++.|+.|||++|+++|.+|..++++++|+.|+ |++|+++|.+|..++++++|++|||++|+++
T Consensus 647 --------~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld-Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 647 --------YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD-LSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp --------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE-CCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred --------cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE-CCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 0001112377899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCEEECCCCc-Ccc
Q 047519 723 GHIPTQLTSLKYLSVLNLSYNQ-FEG 747 (892)
Q Consensus 723 ~~ip~~l~~l~~L~~L~ls~N~-l~g 747 (892)
|.||.. ..+..+....+.+|+ +.|
T Consensus 718 g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 718 GPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp EECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred ccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999974 344555666677886 444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.3e-58 Score=551.62 Aligned_cols=573 Identities=17% Similarity=0.155 Sum_probs=346.9
Q ss_pred CCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhh-hhhcccCCC
Q 047519 90 PHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQL-DVKTTFLHD 168 (892)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~-~l~~~~~~l 168 (892)
+++++|+|++|.+++. .+..|+++++|++|+|++|.+.+..|..++ ++++|++|+++++.+. .+|. .++ ++
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~-~l~~~~~~----~l 96 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNELS-QLSDKTFA----FC 96 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSCCC-CCCTTTTT----TC
T ss_pred CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCccC-ccChhhhc----cC
Confidence 3444455554444442 223344444555555554444444444444 4444444444444322 2222 233 44
Q ss_pred CCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCC
Q 047519 169 DLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNR 247 (892)
Q Consensus 169 ~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~ 247 (892)
++|++|++++|.+.+..+.. +.+ ++|++|++++| .+++..| ..++++++|++|++++|.
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n--~l~~~~~----------------~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQ--KNLITLDLSHN--GLSSTKL----------------GTQVQLENLQELLLSNNK 156 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTC--TTCCEEECCSS--CCSCCCC----------------CSSSCCTTCCEEECCSSC
T ss_pred CCCCEEECCCCccCccChhHcccc--CCCCEEECCCC--cccccCc----------------hhhcccccCCEEEccCCc
Confidence 44455555444444333333 444 44455555444 4444433 344444445555554444
Q ss_pred CCCcCCcccc--CCCCcceec---ccceeecChhhhcCCCCCcEEEccCCCCCcCCCccc---cCCCCCcEEecCccccc
Q 047519 248 TCGKTMDVGL--LFEQDDTLG---QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWK---STLQSTVVLSTTEAEYM 319 (892)
Q Consensus 248 ~~~~~~~~l~--~l~~L~~L~---~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~l~~~~~n 319 (892)
+.+..+..+. .+++|++|+ +.+.+..|. .+..+++|+.|++.++.+.+.....+ ...++|+.|+++ +|
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~---~n 232 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS---NS 232 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT---TS
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc---CC
Confidence 4433332221 223333333 233333333 45555555555555555443211111 023556666666 66
Q ss_pred cceeecc-chhhhhhccCCCCC--cCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcc
Q 047519 320 AITKAVK-EAIWLQVFVRGRRH--YAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVS 396 (892)
Q Consensus 320 ~l~~~~p-~l~~l~l~~~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 396 (892)
.+.+..| .+ ..++. |++|++++|.+++..|..|+.+++|++|++++|.+++..+ ..|..+++|++|+++
T Consensus 233 ~l~~~~~~~~-------~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 233 QLSTTSNTTF-------LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLK 304 (680)
T ss_dssp CCCEECTTTT-------GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECT
T ss_pred cccccChhHh-------hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh-hhhcCCCCccEEecc
Confidence 6655555 44 44433 6666666666665555666666666666666666665444 556666666666666
Q ss_pred cCCCCCCc-----cccC----CC-CCCCccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCC--chhhhhhCCCc
Q 047519 397 NNRLSLST-----KLKV----NS-SFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRI--SSWMWDLGITA 463 (892)
Q Consensus 397 ~n~l~~~~-----~~~~----~~-~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~~~ 463 (892)
+| ...+ .+|. .+ .+++|++|++++|.++.+ |..+..+++|++|++++|.+.... ...+..+..++
T Consensus 305 ~~--~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~ 382 (680)
T 1ziw_A 305 RS--FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382 (680)
T ss_dssp TC--BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred ch--hhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence 55 2221 1111 22 567777777777777744 345777777777777777654321 22233332257
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccc-ccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS-QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH 542 (892)
Q Consensus 464 L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 542 (892)
|+.|++++|++++..|..+..+. +|+.|++++|.+.+.+| ..|..+++|++|++++|++++..+..+..++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~--------~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 454 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLG--------HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCT--------TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT
T ss_pred CceEECCCCCCCeEChhhhhCCC--------CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc
Confidence 78888888887777776666555 77788888888776555 5677778888888888887777777777888
Q ss_pred CCcEEEccCCCCC--CCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhh
Q 047519 543 HLEVLDVGNNQIN--DNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM 620 (892)
Q Consensus 543 ~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~ 620 (892)
+|++|++++|.+. +.+|..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++..+..+.+
T Consensus 455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 526 (680)
T 1ziw_A 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHANPG------ 526 (680)
T ss_dssp TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTTSTT------
T ss_pred ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh--ccccccCEEeCCCCCccccchhhccC------
Confidence 8888888888776 4567777788888888888888876666555 67778888888888877542211100
Q ss_pred cccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCC
Q 047519 621 HGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD 700 (892)
Q Consensus 621 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ 700 (892)
.+...+..+++|+.|+|++|+++...+..|.++++|+.|+ |++|++++.
T Consensus 527 ------------------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~-Ls~N~l~~l 575 (680)
T 1ziw_A 527 ------------------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID-LGLNNLNTL 575 (680)
T ss_dssp ------------------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCC
T ss_pred ------------------------------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE-CCCCCCCcC
Confidence 0000112267899999999999954445689999999998 999999977
Q ss_pred cchhccCCCCCCeeeCCCCcCCCCCccccC-CCCCCCEEECCCCcCcccCCC
Q 047519 701 IPSLLRNLTEVESLDLSSNMLVGHIPTQLT-SLKYLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 701 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~iP~ 751 (892)
.+..|.++++|+.|+|++|++++..|..+. .+++|+.|++++|++.+.++.
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 777889999999999999999988888787 788999999999999988775
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-57 Score=548.09 Aligned_cols=585 Identities=17% Similarity=0.169 Sum_probs=494.0
Q ss_pred CeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCC
Q 047519 93 RKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEE 172 (892)
Q Consensus 93 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~ 172 (892)
+.+|.+++.++. +|..+. ++|++|+|++|.+.+..|..++ ++++|++|+++++.+.+..|..++ ++++|+
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~ 76 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQ----KLPMLK 76 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHH----HCTTCC
T ss_pred CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHh----cccCcC
Confidence 456666666655 676665 7999999999999987777799 999999999999887887788888 999999
Q ss_pred EEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCc
Q 047519 173 EIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGK 251 (892)
Q Consensus 173 ~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~ 251 (892)
+|+|++|.+....+.. +.+ ++|++|++++| .+++..| ..++++++|++|++++|.+.+.
T Consensus 77 ~L~L~~n~l~~l~~~~~~~l--~~L~~L~L~~n--~l~~~~~----------------~~~~~l~~L~~L~Ls~n~l~~~ 136 (680)
T 1ziw_A 77 VLNLQHNELSQLSDKTFAFC--TNLTELHLMSN--SIQKIKN----------------NPFVKQKNLITLDLSHNGLSST 136 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTC--TTCSEEECCSS--CCCCCCS----------------CTTTTCTTCCEEECCSSCCSCC
T ss_pred EEECCCCccCccChhhhccC--CCCCEEECCCC--ccCccCh----------------hHccccCCCCEEECCCCccccc
Confidence 9999999998776655 889 99999999999 8887766 7899999999999999999999
Q ss_pred CCccccCCCCcceec---ccceeecChhhhc--CCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc
Q 047519 252 TMDVGLLFEQDDTLG---QSVNGYVDSDYIG--DLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK 326 (892)
Q Consensus 252 ~~~~l~~l~~L~~L~---~~~~~~~p~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p 326 (892)
.|..++++++|++|+ |.+.+..+. .+. .+++|++|++++|.+++..|..+..+++|+.|++. ++.+.+...
T Consensus 137 ~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~---~~~l~~~~~ 212 (680)
T 1ziw_A 137 KLGTQVQLENLQELLLSNNKIQALKSE-ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN---NVQLGPSLT 212 (680)
T ss_dssp CCCSSSCCTTCCEEECCSSCCCCBCHH-HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT---TCCCHHHHH
T ss_pred CchhhcccccCCEEEccCCcccccCHH-HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc---ccccChhhH
Confidence 999999999999999 667665555 554 56899999999999999999999999999999999 887754333
Q ss_pred -chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCC--CCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCC
Q 047519 327 -EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELEN--LILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403 (892)
Q Consensus 327 -~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 403 (892)
.+ .. ....++|++|++++|.+++..|..+..++. |++|++++|.+++..+ ..|..+++|++|++++| .+.
T Consensus 213 ~~~---~~-~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n--~l~ 285 (680)
T 1ziw_A 213 EKL---CL-ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEYN--NIQ 285 (680)
T ss_dssp HHH---HH-HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSC--CBS
T ss_pred HHH---HH-HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-ccccCcccccEeeCCCC--ccC
Confidence 11 00 024589999999999999999999988865 9999999999997666 78999999999999999 666
Q ss_pred ccccCCC-CCCCccEEEccCCCCC------Ccch----hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCC
Q 047519 404 TKLKVNS-SFPNLFGLGLSACNIS------EFPD----ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNN 472 (892)
Q Consensus 404 ~~~~~~~-~l~~L~~L~L~~n~l~------~lp~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 472 (892)
+..+..+ .+++|+.|++++|... .+|. .+..+++|++|++++|.+.+..+..+..+ ++|++|++++|
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n 363 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL--INLKYLSLSNS 363 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC--TTCCEEECTTC
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc--cCCcEEECCCC
Confidence 7666666 8999999999987543 3443 68889999999999999999888888888 99999999999
Q ss_pred CCCCC--CCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCC-ccccCCCCCcEEEc
Q 047519 473 FLTNI--EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP-LSLVNCHHLEVLDV 549 (892)
Q Consensus 473 ~l~~~--~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L 549 (892)
.+... ....+..+ ..+.|+.|++++|++++..|..|..+++|+.|++++|.+++.+| ..+.++++|++|++
T Consensus 364 ~~~~~~l~~~~f~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 364 FTSLRTLTNETFVSL------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp BSCCCEECTTTTGGG------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred chhhhhcchhhhccc------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 86432 22222221 11378999999999999999999999999999999999987666 68999999999999
Q ss_pred cCCCCCCCcchhccCCCCCCEEEccCCcCC--CCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCc
Q 047519 550 GNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSV 627 (892)
Q Consensus 550 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~ 627 (892)
++|++.+..+..|..+++|+.|++++|.+. +.+|..+ ..+++|++|++++|++++..|.. +.+
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~l~~i~~~~-~~~------------ 502 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNNIANINDDM-LEG------------ 502 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSCCCCCCTTT-TTT------------
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCCCCcCChhh-hcc------------
Confidence 999999988899999999999999999987 5567666 88999999999999999655533 221
Q ss_pred cccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCC--------hhhhcCccccccccccCCCCCCC
Q 047519 628 EVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGI--------PEVVGKLNLLKGLNNISHNNLTG 699 (892)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~--------p~~~~~l~~L~~L~~Ls~N~l~~ 699 (892)
+++|+.|++++|++++.. +..++++++|+.|+ |++|+++.
T Consensus 503 -------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~-L~~N~l~~ 550 (680)
T 1ziw_A 503 -------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN-LESNGFDE 550 (680)
T ss_dssp -------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE-CCSSCCCC
T ss_pred -------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE-CCCCCCCC
Confidence 677899999999998532 22478999999999 99999995
Q ss_pred CcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCC--CCCcccCCccCCCCCCCCCC
Q 047519 700 DIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS--QFNTFRNDSYVGNSGLCGFP 773 (892)
Q Consensus 700 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~--~~~~~~~~~~~gN~~lc~~~ 773 (892)
..+..|+++++|+.|||++|++++..+..|..+++|+.|++++|++++..|... .+.++....+.|||+.|+|+
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 555679999999999999999998777788999999999999999998776532 35567778889999999865
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-57 Score=558.48 Aligned_cols=566 Identities=21% Similarity=0.181 Sum_probs=380.1
Q ss_pred ECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCcccc-CCCCCcccCCCCceecC
Q 047519 70 DLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSI-PASIDLINVSRLSTNYL 148 (892)
Q Consensus 70 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~~~L~~L~~L~L 148 (892)
|.++.+++. +| . -.++|++|||++|.+++. .|..|+++++|++|+|++|.+.+.+ |..|+ ++++|++|+|
T Consensus 10 dcs~~~L~~-vP---~--lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~L 80 (844)
T 3j0a_A 10 FYRFCNLTQ-VP---Q--VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDL 80 (844)
T ss_dssp EESCCCSSC-CC---S--SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEEC
T ss_pred EccCCCCCC-CC---C--CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEEC
Confidence 444555553 33 2 347889999999998875 6788899999999999998777676 66777 7777777777
Q ss_pred CcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc---CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccc
Q 047519 149 PIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE---NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQ 225 (892)
Q Consensus 149 s~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~---~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~ 225 (892)
++|.+.+..|..+. ++++|++|+|++|.+.+..+.. ..+ ++|++|+|++| .+++..+.
T Consensus 81 s~N~l~~~~p~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~~~L--~~L~~L~Ls~N--~l~~~~~~----------- 141 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQ----GLFHLFELRLYFCGLSDAVLKDGYFRNL--KALTRLDLSKN--QIRSLYLH----------- 141 (844)
T ss_dssp TTCCCCEECTTSSC----SCSSCCCEECTTCCCSSCCSTTCCCSSC--SSCCEEEEESC--CCCCCCCC-----------
T ss_pred CCCcCcccCHhHcc----CCcccCEeeCcCCCCCcccccCcccccc--CCCCEEECCCC--cccccccc-----------
Confidence 66665555566665 6666666666666665543321 455 55555555555 55443320
Q ss_pred cccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCC--CCCcEEEccCCCCCcCCCcccc
Q 047519 226 EFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDL--DKRRSITGYVFNFAGGPINWKS 303 (892)
Q Consensus 226 ~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~ 303 (892)
..++++++|++|++++|.+.+..+. .+..+ ++|+.|++++|.+.+..|..++
T Consensus 142 ----~~~~~L~~L~~L~Ls~N~i~~~~~~----------------------~l~~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 142 ----PSFGKLNSLKSIDFSSNQIFLVCEH----------------------ELEPLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp ----GGGGTCSSCCEEEEESSCCCCCCSG----------------------GGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred ----hhHhhCCCCCEEECCCCcCCeeCHH----------------------HcccccCCccceEECCCCccccccccchh
Confidence 2345555555555555544332221 23322 4555555555555555554444
Q ss_pred CCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCC---CCCCEEECcC--------
Q 047519 304 TLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYEL---ENLILLRLPS-------- 372 (892)
Q Consensus 304 ~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~L~~-------- 372 (892)
.+++ . .....|++|++++|.+++..|..+... ++++.|.++.
T Consensus 196 ~~~~--------------------~-------~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 196 KCMN--------------------P-------FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp SSSC--------------------T-------TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred hcCC--------------------c-------cccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 4333 0 000124444444554444444433321 3444454442
Q ss_pred -CcCCCccChhhcCCC--CCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCc-chhhhCCCCccEEEccCCC
Q 047519 373 -NRLSGTTELYDFAKL--KNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNR 447 (892)
Q Consensus 373 -n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~ 447 (892)
+.+.+... ..|..+ ++|+.|++++| .+.+..+..+ .+++|+.|++++|+++.+ |..+..+++|++|++++|.
T Consensus 249 ~~~l~~~~~-~~f~~l~~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 249 FHNIKDPDQ-NTFAGLARSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp CSSSTTGGG-TTTTTTTTSCCCEEECTTC--CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred ccccCCCCh-hhhhccccCCccEEECCCC--cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 22222222 334443 56777777777 4445445444 677788888888877744 5677888888888888888
Q ss_pred CCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccC
Q 047519 448 IHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNG 527 (892)
Q Consensus 448 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 527 (892)
+.+..|..+..+ ++|+.|++++|.+.+..+..+..+. +|++|++++|.+++. ..+++|+.|++++
T Consensus 326 l~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l~--------~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 326 LGELYSSNFYGL--PKVAYIDLQKNHIAIIQDQTFKFLE--------KLQTLDLRDNALTTI-----HFIPSIPDIFLSG 390 (844)
T ss_dssp CSCCCSCSCSSC--TTCCEEECCSCCCCCCCSSCSCSCC--------CCCEEEEETCCSCCC-----SSCCSCSEEEEES
T ss_pred CCccCHHHhcCC--CCCCEEECCCCCCCccChhhhcCCC--------CCCEEECCCCCCCcc-----cCCCCcchhccCC
Confidence 887777777777 8888888888888877776666665 888888888888742 2377899999999
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCCCCCC-cchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcC
Q 047519 528 NRLEGPLPLSLVNCHHLEVLDVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG 606 (892)
Q Consensus 528 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 606 (892)
|+++ .+|.. ..+++.|++++|++++. .+..+..+++|++|++++|++++..+... +..+++|+.|++++|.+++
T Consensus 391 N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 391 NKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp CCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSS
T ss_pred CCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc-cccCCccccccCCCCcccc
Confidence 9998 55543 46789999999999874 23445689999999999999976554322 3567899999999999975
Q ss_pred cCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccc
Q 047519 607 VLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 686 (892)
Q Consensus 607 ~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L 686 (892)
..+..... ..+..+++|+.|+|++|++++..|..+.++++|
T Consensus 466 ~~~~~~~~---------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 466 AWETELCW---------------------------------------DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506 (844)
T ss_dssp SCCSCCCS---------------------------------------SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred ccccccch---------------------------------------hhhcCcccccEEECCCCcccccChhHccchhhh
Confidence 43321100 001116789999999999999999999999999
Q ss_pred ccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCCCCCcccCCccCCC
Q 047519 687 KGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGN 766 (892)
Q Consensus 687 ~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 766 (892)
+.|+ |++|+|++..|..+. ++|+.|||++|++++.+|..|. +|+.|++++|++.+.++.. .|......+|
T Consensus 507 ~~L~-Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~ 576 (844)
T 3j0a_A 507 RGLS-LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTN 576 (844)
T ss_dssp SEEE-EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTT
T ss_pred heeE-CCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcC
Confidence 9998 999999987777776 8999999999999999998765 7889999999999877642 3322223467
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 047519 767 SGLCGFPLLESCNIDEAPEPVG 788 (892)
Q Consensus 767 ~~lc~~~~~~~c~~~~~~~~~~ 788 (892)
..+||.|....|..|+...+.+
T Consensus 577 ~~~~~~~~~~~C~~p~~~~g~~ 598 (844)
T 3j0a_A 577 VTIAGPPADIYCVYPDSFSGVS 598 (844)
T ss_dssp TTTCCCGGGCCCSSCSSSCSCC
T ss_pred cccccccccCccCCchhhCCCc
Confidence 7788888888898776655444
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-53 Score=503.51 Aligned_cols=532 Identities=18% Similarity=0.139 Sum_probs=380.4
Q ss_pred ECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCC
Q 047519 70 DLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLP 149 (892)
Q Consensus 70 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls 149 (892)
+.++.+++ .+|. .+. +++++|||++|.+++. .|..|+++++|++|+|++|.+.+..|..|+ ++++|++|+++
T Consensus 18 ~c~~~~l~-~iP~--~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls 89 (606)
T 3t6q_A 18 NCENLGLN-EIPG--TLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLT 89 (606)
T ss_dssp ECTTSCCS-SCCT--TSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECT
T ss_pred ECCCCCcc-cCcC--CCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCC
Confidence 34444444 4444 343 3789999999999985 688999999999999999999988888899 77777777777
Q ss_pred cccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhccccccc
Q 047519 150 IFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFE 228 (892)
Q Consensus 150 ~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p 228 (892)
++...+..|..++ ++++|++|++++|.+.+..+.. ..+ ++|++|++++| .+++..+
T Consensus 90 ~n~l~~~~~~~~~----~l~~L~~L~L~~n~i~~l~~~~~~~l--~~L~~L~L~~n--~l~~~~~--------------- 146 (606)
T 3t6q_A 90 ANPLIFMAETALS----GPKALKHLFFIQTGISSIDFIPLHNQ--KTLESLYLGSN--HISSIKL--------------- 146 (606)
T ss_dssp TCCCSEECTTTTS----SCTTCCEEECTTSCCSCGGGSCCTTC--TTCCEEECCSS--CCCCCCC---------------
T ss_pred CCcccccChhhhc----ccccccEeeccccCcccCCcchhccC--CcccEEECCCC--cccccCc---------------
Confidence 7765665566666 7777777777777666554444 556 66666666666 5554222
Q ss_pred ccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCc--EEEccCCCCCcCCCccccCCC
Q 047519 229 MKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRR--SITGYVFNFAGGPINWKSTLQ 306 (892)
Q Consensus 229 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~ 306 (892)
+.+..+++|++|++++|.+.+ ..|. .++.+++|+ +|++++|.+.+..|..+.. .
T Consensus 147 -~~~~~l~~L~~L~L~~n~l~~---------------------~~~~-~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~ 202 (606)
T 3t6q_A 147 -PKGFPTEKLKVLDFQNNAIHY---------------------LSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-A 202 (606)
T ss_dssp -CTTCCCTTCCEEECCSSCCCE---------------------ECHH-HHHTTTTCCSEEEECTTCCCCEECTTTTTT-C
T ss_pred -ccccCCcccCEEEcccCcccc---------------------cChh-hhhhhcccceeEEecCCCccCccChhHhhh-c
Confidence 223335555555555553322 2222 455555555 5566666665544443332 4
Q ss_pred CCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCC----ccChh
Q 047519 307 STVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSG----TTELY 382 (892)
Q Consensus 307 ~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~----~~~~~ 382 (892)
+|+.|+++ +|. . ++..+..+.+++...+....+.+ .++..
T Consensus 203 ~L~~L~l~---~~~---~------------------------------~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 203 VFQSLNFG---GTQ---N------------------------------LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp EEEEEECT---TCS---C------------------------------HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred cccccccC---Cch---h------------------------------HHHHhhhccccchhheechhhccccccccChh
Confidence 55555555 443 1 12222222222221111111100 11112
Q ss_pred hcCCCC--CCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhh
Q 047519 383 DFAKLK--NLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDL 459 (892)
Q Consensus 383 ~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 459 (892)
.+..+. +|++|++++| .+.+..+..+ .+++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+..+
T Consensus 247 ~~~~l~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKH--YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp GGGGGGGSEEEEEECTTC--CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred HhchhhcCceeEEEeecC--ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 222222 5666666666 3334333333 5666777777777777777777788888888888888887767777777
Q ss_pred CCCcccEEEccCCCCCCCCCC-CCCCCCeeecCCCCcccEEECCCCccCccc--cccccCCCCCCEEEccCCCCCCCCCc
Q 047519 460 GITALYYLDLSNNFLTNIEYF-PPTNMTQLNFDSNLTHKVLDMRMNNFNGKI--SQKFVNSCNLTNLNLNGNRLEGPLPL 536 (892)
Q Consensus 460 ~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~ 536 (892)
++|++|++++|.+.+..+. .+..+. +|++|++++|.+.+.. +..+..+++|++|++++|++++..|.
T Consensus 325 --~~L~~L~l~~n~~~~~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 394 (606)
T 3t6q_A 325 --PSLTHLSIKGNTKRLELGTGCLENLE--------NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394 (606)
T ss_dssp --TTCSEEECCSCSSCCBCCSSTTTTCT--------TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred --CcCCEEECCCCCcccccchhhhhccC--------cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence 8888888888887755443 355554 8888888888888765 67888999999999999999988888
Q ss_pred cccCCCCCcEEEccCCCCCCCcch-hccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC-Cc-chh
Q 047519 537 SLVNCHHLEVLDVGNNQINDNFPN-WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL-PT-GYL 613 (892)
Q Consensus 537 ~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~-~~~ 613 (892)
.+..+++|++|++++|++.+..|. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|++++.. |. ..+
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh
Confidence 999999999999999999887654 48899999999999999988888777 88999999999999998632 21 111
Q ss_pred hhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccC
Q 047519 614 DNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS 693 (892)
Q Consensus 614 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls 693 (892)
..+++|+.|++++|++++..|..++++++|+.|+ |+
T Consensus 473 -------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-Ls 508 (606)
T 3t6q_A 473 -------------------------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD-LS 508 (606)
T ss_dssp -------------------------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CC
T ss_pred -------------------------------------------ccCCCccEEECCCCccCccChhhhccccCCCEEE-CC
Confidence 1267899999999999999999999999999999 99
Q ss_pred CCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519 694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 694 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 751 (892)
+|++++.+|..|.++++| .|+|++|++++..|..+..+++|+.|++++|++++.++.
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999 999999999999999999999999999999999987764
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-51 Score=489.95 Aligned_cols=520 Identities=18% Similarity=0.184 Sum_probs=399.6
Q ss_pred CeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCC
Q 047519 64 GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRL 143 (892)
Q Consensus 64 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L 143 (892)
..++.|+|+++.+++..+. ++..+++|++|+|++|.+.+. .|..|+++++|++|+|++|.+.+..|..++ ++++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALS--GPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTS--SCTTC
T ss_pred CcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhc--ccccc
Confidence 4689999999999987676 899999999999999999886 788999999999999999999988899999 99999
Q ss_pred ceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccc-cccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhc
Q 047519 144 STNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVA-EKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQ 222 (892)
Q Consensus 144 ~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~ 222 (892)
++|+++++.+.+.-|..+. ++++|++|++++|.+.+.. +....+ ++|++|++++| .+++..|
T Consensus 108 ~~L~L~~n~i~~l~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n--~l~~~~~--------- 170 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLH----NQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNN--AIHYLSK--------- 170 (606)
T ss_dssp CEEECTTSCCSCGGGSCCT----TCTTCCEEECCSSCCCCCCCCTTCCC--TTCCEEECCSS--CCCEECH---------
T ss_pred cEeeccccCcccCCcchhc----cCCcccEEECCCCcccccCcccccCC--cccCEEEcccC--cccccCh---------
Confidence 9999999886665566777 9999999999999998854 444558 99999999999 9988777
Q ss_pred ccccccccccccCCCCC--EEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCc
Q 047519 223 LNQEFEMKDLGEAKKIL--GMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPIN 300 (892)
Q Consensus 223 ~~~~~p~~~l~~l~~L~--~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~ 300 (892)
..++.+++|+ +|++++|.+.+..| ......+|++|++++|. .++.
T Consensus 171 -------~~~~~l~~L~~l~L~l~~n~l~~~~~-----------------------~~~~~~~L~~L~l~~~~---~~~~ 217 (606)
T 3t6q_A 171 -------EDMSSLQQATNLSLNLNGNDIAGIEP-----------------------GAFDSAVFQSLNFGGTQ---NLLV 217 (606)
T ss_dssp -------HHHHTTTTCCSEEEECTTCCCCEECT-----------------------TTTTTCEEEEEECTTCS---CHHH
T ss_pred -------hhhhhhcccceeEEecCCCccCccCh-----------------------hHhhhccccccccCCch---hHHH
Confidence 6788888999 89999997665433 23344689999999986 3445
Q ss_pred cccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCC--CCCEEECcCCcCCCc
Q 047519 301 WKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELE--NLILLRLPSNRLSGT 378 (892)
Q Consensus 301 ~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~ 378 (892)
.+..+.++....+. .. .+..+...++. +..+..+. +|++|++++|.+++.
T Consensus 218 ~~~~l~~~~l~~l~---~~-----------------~~~~~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 218 IFKGLKNSTIQSLW---LG-----------------TFEDMDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp HHHHTTTCEEEEEE---CC-----------------CCTTSCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred Hhhhccccchhhee---ch-----------------hhccccccccC--------hhHhchhhcCceeEEEeecCccCcc
Confidence 55555554444333 11 11111111111 11111111 455555555555533
Q ss_pred cChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCCch-h
Q 047519 379 TELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISS-W 455 (892)
Q Consensus 379 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~-~ 455 (892)
.+ ..|..+++|++|++++|++ . .+|... .+++|++|++++|.++.+ |..+..+++|++|++++|.+.+.+|. .
T Consensus 270 ~~-~~~~~l~~L~~L~l~~n~l--~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 270 SS-NTFHCFSGLQELDLTATHL--S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp CT-TTTTTCTTCSEEECTTSCC--S-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred CH-HHhccccCCCEEeccCCcc--C-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 33 4455555555555555522 2 233333 556666666666666644 45677788888888888887766554 3
Q ss_pred hhhhCCCcccEEEccCCCCCCCC--CCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCC
Q 047519 456 MWDLGITALYYLDLSNNFLTNIE--YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGP 533 (892)
Q Consensus 456 ~~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 533 (892)
+..+ ++|++|++++|.+++.. +..+..+. +|++|++++|.+.+..|..+..+++|++|++++|++++.
T Consensus 346 ~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 346 LENL--ENLRELDLSHDDIETSDCCNLQLRNLS--------HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp TTTC--TTCCEEECCSSCCCEEEESTTTTTTCT--------TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred hhcc--CcCCEEECCCCccccccCcchhcccCC--------CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 6666 88888888888887765 44555554 888999999998888888899999999999999999877
Q ss_pred CCc-cccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCC-CCCCCCCcCCCCccEEEcCCCCCcCcCCcc
Q 047519 534 LPL-SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGDNTTIVPFPRFRIIDLSHNEFTGVLPTG 611 (892)
Q Consensus 534 ~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 611 (892)
.|. .+..+++|++|++++|++++..|..+..+++|++|++++|++++. ++....+..+++|++|++++|++++..|..
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 654 488999999999999999998889999999999999999999763 233233488999999999999999777754
Q ss_pred hhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccc
Q 047519 612 YLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN 691 (892)
Q Consensus 612 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~ 691 (892)
+ .+ ++.|+.|||++|++++.+|..+.+++.| .|+
T Consensus 496 ~-~~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~- 529 (606)
T 3t6q_A 496 F-TS-------------------------------------------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN- 529 (606)
T ss_dssp T-TT-------------------------------------------CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE-
T ss_pred h-cc-------------------------------------------ccCCCEEECCCCccCcCChhHhCccccc-EEE-
Confidence 3 21 6789999999999999999999999999 998
Q ss_pred cCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCc
Q 047519 692 ISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIP 726 (892)
Q Consensus 692 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 726 (892)
+++|++++.+|..++.+++|+.|++++|.+.+..+
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999999998665
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.1e-52 Score=492.57 Aligned_cols=529 Identities=17% Similarity=0.127 Sum_probs=435.8
Q ss_pred EECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecC
Q 047519 69 LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYL 148 (892)
Q Consensus 69 L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~L 148 (892)
++.++.+++ .+|. .+. ++|++|+|++|.+++. .+..|+++++|++|+|++|.+.+..|..|+
T Consensus 16 ~~c~~~~l~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~------------ 77 (606)
T 3vq2_A 16 YQCMDQKLS-KVPD--DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWH------------ 77 (606)
T ss_dssp EECTTSCCS-SCCT--TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTT------------
T ss_pred eEccCCCcc-cCCC--CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhh------------
Confidence 455666666 4554 333 7889999999998875 556888999999999999988876676666
Q ss_pred CcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccc
Q 047519 149 PIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEF 227 (892)
Q Consensus 149 s~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~ 227 (892)
++++|++|+|++|.+.+..|.. +++ ++|++|++++| .+++..|
T Consensus 78 ------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~L~~n--~l~~~~~-------------- 121 (606)
T 3vq2_A 78 ------------------GLHHLSNLILTGNPIQSFSPGSFSGL--TSLENLVAVET--KLASLES-------------- 121 (606)
T ss_dssp ------------------TCTTCCEEECTTCCCCCCCTTSSTTC--TTCCEEECTTS--CCCCSSS--------------
T ss_pred ------------------chhhcCEeECCCCcccccChhhcCCc--ccCCEEEccCC--ccccccc--------------
Confidence 7888888888888888887777 888 99999999999 8877766
Q ss_pred cccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCC
Q 047519 228 EMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQS 307 (892)
Q Consensus 228 p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 307 (892)
..++++++|++|++++|.+.+ ..+|. .++++++|++|++++|.+++..|..++.+++
T Consensus 122 --~~~~~l~~L~~L~L~~n~l~~--------------------~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 122 --FPIGQLITLKKLNVAHNFIHS--------------------CKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp --SCCTTCTTCCEEECCSSCCCC--------------------CCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred --cccCCCCCCCEEeCCCCcccc--------------------eechH-hHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 678889999999999986543 13456 8889999999999999999888887777665
Q ss_pred Cc----EEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCC-cCCCccccCCCCCCEEECcCCcCCCc----
Q 047519 308 TV----VLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLS-GSIPSSVYELENLILLRLPSNRLSGT---- 378 (892)
Q Consensus 308 L~----~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~---- 378 (892)
|+ +|+++ +|.+.+..+.. ....+|++|++++|.++ +..|..+.+++.|+.+++..+.+.+.
T Consensus 179 L~~~l~~L~l~---~n~l~~~~~~~-------~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 179 NPQVNLSLDMS---LNPIDFIQDQA-------FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp CTTCCCEEECT---TCCCCEECTTT-------TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred cccccceeecc---CCCcceeCccc-------ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 54 89999 99998766643 34448999999999987 46778889999999998866554321
Q ss_pred -cChhhcCCCC--CCCEEEc-ccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCch
Q 047519 379 -TELYDFAKLK--NLKWLFV-SNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISS 454 (892)
Q Consensus 379 -~~~~~~~~l~--~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~ 454 (892)
++...+..+. .++.+++ ..| .+.+..+....+++|+.|++++|.++.+| .+..+++|++|++++|.+ +.+|.
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~ 324 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT 324 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCT--TCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC
T ss_pred ccChHHhhhhhhccHhheeccccc--cccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc
Confidence 1112333333 4566777 556 56677776448999999999999999998 788999999999999999 57784
Q ss_pred hhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc--ccccccCCCCCCEEEccCCCCCC
Q 047519 455 WMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK--ISQKFVNSCNLTNLNLNGNRLEG 532 (892)
Q Consensus 455 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~ 532 (892)
. .+ ++|+.|++++|...+.. .+..+ ++|++|++++|.+++. .|..+..+++|++|++++|.+++
T Consensus 325 ~--~l--~~L~~L~l~~n~~~~~~--~~~~l--------~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 390 (606)
T 3vq2_A 325 L--DL--PFLKSLTLTMNKGSISF--KKVAL--------PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390 (606)
T ss_dssp C--CC--SSCCEEEEESCSSCEEC--CCCCC--------TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE
T ss_pred C--CC--CccceeeccCCcCccch--hhccC--------CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc
Confidence 4 55 99999999999655433 23333 4899999999999876 37888999999999999999984
Q ss_pred CCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCc-CCc
Q 047519 533 PLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV-LPT 610 (892)
Q Consensus 533 ~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~ 610 (892)
+|..+..+++|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+ ..+++|++|++++|++++. +|.
T Consensus 391 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 391 -MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp -ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECS
T ss_pred -chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHH
Confidence 66889999999999999999999877 688999999999999999999888877 8899999999999999874 453
Q ss_pred chhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccccccc
Q 047519 611 GYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 690 (892)
Q Consensus 611 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~ 690 (892)
.+ ++ +++|+.|++++|++++..|..++++++|+.|+
T Consensus 468 ~~-~~-------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 468 VF-AN-------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp CC-TT-------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred hh-cc-------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 32 21 67899999999999999999999999999999
Q ss_pred ccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC-CCCEEECCCCcCcccCCC
Q 047519 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK-YLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 691 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~iP~ 751 (892)
+++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|++|++++|++.+.+|.
T Consensus 504 -Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 504 -MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp -CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred -CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999999999 7888899987 599999999999988775
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-52 Score=499.62 Aligned_cols=509 Identities=15% Similarity=0.156 Sum_probs=334.6
Q ss_pred CCCHHHHHHHHHhhhcCccCCCCCCCccchhc-ccCCcCCCCCCCCCCccc---cceEecCCCCeEEEEECCCCCCCCCC
Q 047519 5 LCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQ-QSRPKMMSWKEDADCCSW---DGVTCDTVAGHVIGLDLSCSWLHGNI 80 (892)
Q Consensus 5 ~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~-~~~~~l~~w~~~~~~c~w---~gv~C~~~~~~v~~L~L~~~~l~g~~ 80 (892)
.....|++||.+||+++..+ .|.+. ..++...+|..+.+||.| +||+|+.. |||++|+|++++++|.+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~-------~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGK-------NWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRV 97 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-------GCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCC-------CcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcC
Confidence 34457999999999998654 13221 233456799988999999 99999875 89999999999999999
Q ss_pred CCCCCccCCCCCCeEecCCCCCCCC-----------CCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCC
Q 047519 81 PSNSSLFFLPHIRKLNLAFNDFNYS-----------EISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLP 149 (892)
Q Consensus 81 ~~~~~l~~l~~L~~L~Ls~n~l~~~-----------~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls 149 (892)
|+ +++++++|++|||++|.+... .+|... +.+|| ++++++.+.+.+|..++. .+.++..+++.
T Consensus 98 p~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~-~~~~l~~~~l~ 171 (636)
T 4eco_A 98 PD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSD-LIKDCINSDPQ 171 (636)
T ss_dssp CG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCH-HHHHHHHHCTT
T ss_pred Ch--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHH-HHHHHhhcCcc
Confidence 98 999999999999999976211 134333 56677 888888888888776651 12233333332
Q ss_pred cccCCcchhhhhhcccCCCCCCCEEecC--CccCccccccc-CCCCCCcccEEEccCCCCcCccC---------------
Q 047519 150 IFAFSDCFQLDVKTTFLHDDLEEEIYMT--QLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASK--------------- 211 (892)
Q Consensus 150 ~~~~~~~~p~~l~~~~~~l~~L~~L~L~--~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~--------------- 211 (892)
..... .. ....++.+.+. .|.+++ +|.. +++ ++|++|+|++| .+++.
T Consensus 172 ~~~~~------~~----~~~~l~~l~l~~~~n~l~~-ip~~l~~l--~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 172 QKSIK------KS----SRITLKDTQIGQLSNNITF-VSKAVMRL--TKLRQFYMGNS--PFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCCCC------CC----CCCCCCTTTTTCCSCEEEE-ECGGGGGC--TTCCEEEEESC--CCCGGGBSSSCSCTTSHHHH
T ss_pred ccccc------cc----cccchhhhhhccccCCCcc-CCHHHhcc--cCCCEEECcCC--ccccccccccccccccchhc
Confidence 10000 00 11122222222 234444 4444 555 55555555555 55553
Q ss_pred --ChhHHHHhhhcccccccccccc--cCCCCCEEEcccCCCCCcCCccccCCCCcceec---cc-cee-ecChhhhcCC-
Q 047519 212 --SKDEIEKLKTQLNQEFEMKDLG--EAKKILGMEICRNRTCGKTMDVGLLFEQDDTLG---QS-VNG-YVDSDYIGDL- 281 (892)
Q Consensus 212 --~p~~i~~l~~~~~~~~p~~~l~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~---~~-~~~-~~p~~~l~~l- 281 (892)
+| ..++ ++++|++|++++|.+.+.+|..++++++|++|+ |. +.| .+|. .++.+
T Consensus 237 ~~ip----------------~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~ 299 (636)
T 4eco_A 237 QYKT----------------EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALA 299 (636)
T ss_dssp HHTT----------------SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHH
T ss_pred ccCc----------------hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhh
Confidence 44 5666 666777777776666665555555555555554 33 555 5555 55554
Q ss_pred -----CCCcEEEccCCCCCcCCCc--cccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcC
Q 047519 282 -----DKRRSITGYVFNFAGGPIN--WKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGS 354 (892)
Q Consensus 282 -----~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~ 354 (892)
++|++|++++|.++ .+|. .++++++|++|+++ +|.+.|.+|.+ ..+++|++|++++|.++ .
T Consensus 300 ~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~---~N~l~g~ip~~-------~~l~~L~~L~L~~N~l~-~ 367 (636)
T 4eco_A 300 DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL---YNQLEGKLPAF-------GSEIKLASLNLAYNQIT-E 367 (636)
T ss_dssp HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC---SCCCEEECCCC-------EEEEEESEEECCSSEEE-E
T ss_pred ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc---CCcCccchhhh-------CCCCCCCEEECCCCccc-c
Confidence 77777777777777 6776 77777777777777 77777777766 66677777777777776 6
Q ss_pred CCccccCCCC-CCEEECcCCcCCCccChhhcCCCC--CCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchh
Q 047519 355 IPSSVYELEN-LILLRLPSNRLSGTTELYDFAKLK--NLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDI 431 (892)
Q Consensus 355 ~p~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 431 (892)
+|..+..+++ |++|++++|.++ .+| ..+..++ +|++|++++| .+.+.. |..
T Consensus 368 lp~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N--~l~~~~----------------------p~~ 421 (636)
T 4eco_A 368 IPANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYN--EIGSVD----------------------GKN 421 (636)
T ss_dssp CCTTSEEECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSS--CTTTTT----------------------TCS
T ss_pred ccHhhhhhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCC--cCCCcc----------------------hhh
Confidence 6666777776 777777777776 555 3444433 5666666666 333333 333
Q ss_pred hh-------CCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCC
Q 047519 432 LR-------TLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMN 504 (892)
Q Consensus 432 l~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n 504 (892)
+. .+++|++|++++|.++...+..+..+ ++|++|++++|+++.+++..+.... -.+.++++|+.|++++|
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l--~~L~~L~Ls~N~l~~i~~~~~~~~~-~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG--SPLSSINLMGNMLTEIPKNSLKDEN-ENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT--CCCSEEECCSSCCSBCCSSSSEETT-EECTTGGGCCEEECCSS
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccC--CCCCEEECCCCCCCCcCHHHhcccc-ccccccCCccEEECcCC
Confidence 33 44556666666666653222223334 5666666666666533322222110 01122237888888888
Q ss_pred ccCcccccccc--CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEc------cCCCCCCCcchhccCCCCCCEEEccCC
Q 047519 505 NFNGKISQKFV--NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDV------GNNQINDNFPNWLEILPELQVLILRSN 576 (892)
Q Consensus 505 ~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~L~~L~L~~N 576 (892)
+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|+| ++|++.+.+|.++..+++|++|++++|
T Consensus 499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 888 6777776 88999999999999996 8888889999999999 568888999999999999999999999
Q ss_pred cCCCCCCCCCCCcCCCCccEEEcCCCCCcCc
Q 047519 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV 607 (892)
Q Consensus 577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 607 (892)
++ +.+|..+ . ++|++||+++|++...
T Consensus 577 ~l-~~ip~~~--~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 577 DI-RKVNEKI--T--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CC-CBCCSCC--C--TTCCEEECCSCTTCEE
T ss_pred cC-CccCHhH--h--CcCCEEECcCCCCccc
Confidence 99 7788765 3 7999999999998743
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-50 Score=488.09 Aligned_cols=492 Identities=17% Similarity=0.163 Sum_probs=315.8
Q ss_pred CCCCCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCC-----CC--ccc------------cceEecCC
Q 047519 2 SAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDA-----DC--CSW------------DGVTCDTV 62 (892)
Q Consensus 2 ~~~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~-----~~--c~w------------~gv~C~~~ 62 (892)
+++.+..+|+.||++||+++.++ +|+.+. +| |.| .||.|+.
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-------------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~- 321 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-------------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN- 321 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-------------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-
T ss_pred cccccchHHHHHHHHHHHHcCCC-------------------CCCcCCCcccccCCccccccccccccccCcCceEecC-
Confidence 45667788999999999998432 576432 55 999 9999987
Q ss_pred CCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEec-CCCCCCCCCCCCcCcCC-CCCC--------------eEeC-CCC
Q 047519 63 AGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNL-AFNDFNYSEISSGFSQL-RSLT--------------LLNL-SSS 125 (892)
Q Consensus 63 ~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l-~~L~--------------~L~L-s~n 125 (892)
.|||++|+|++++++|.+|+ ++++|++|++||| ++|.+.|. .|-..... ..+. .++. ...
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp TSCEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCCEEEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 58999999999999999998 9999999999999 88877664 22111101 0000 0000 000
Q ss_pred CCcc-----------ccCCCCCcccCCCCceecCCc--ccCCcchhhhhhcccCCCCCCCEEecCCccCccc--------
Q 047519 126 NFMG-----------SIPASIDLINVSRLSTNYLPI--FAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKV-------- 184 (892)
Q Consensus 126 ~~~~-----------~~p~~l~~~~L~~L~~L~Ls~--~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~-------- 184 (892)
.+.+ ..+.... ....++.+.+.. |.+.+ +|..++ ++++|++|+|++|.+.+.
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~--~~l~l~~l~l~~~~N~L~~-IP~~l~----~L~~L~~L~Ls~N~Lsg~~i~~~~~~ 471 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKD--SRISLKDTQIGNLTNRITF-ISKAIQ----RLTKLQIIYFANSPFTYDNIAVDWED 471 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCC--CCCCCCTTTTTCCSCEEEE-ECGGGG----GCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred hhhHHHHHHhhhCccccccccc--cccchhhceeccccCcccc-hhHHHh----cCCCCCEEECcCCcCCCCcccccccc
Confidence 1110 0111112 333444444444 44455 888888 889999999998888772
Q ss_pred ---------cccc-C--CCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCC-CCC-
Q 047519 185 ---------AEKE-N--WLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNR-TCG- 250 (892)
Q Consensus 185 ---------~~~~-~--~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~-~~~- 250 (892)
+|.. + .+ ++|++|+|++| .+.+.+| ..++++++|++|++++|. +++
T Consensus 472 ~s~n~~~g~iP~~l~f~~L--~~L~~L~Ls~N--~l~~~iP----------------~~l~~L~~L~~L~Ls~N~~lsg~ 531 (876)
T 4ecn_A 472 ANSDYAKQYENEELSWSNL--KDLTDVELYNC--PNMTQLP----------------DFLYDLPELQSLNIACNRGISAA 531 (876)
T ss_dssp TTSHHHHHHTTSCCCGGGC--TTCCEEEEESC--TTCCSCC----------------GGGGGCSSCCEEECTTCTTSCHH
T ss_pred cccccccccCChhhhhccC--CCCCEEECcCC--CCCccCh----------------HHHhCCCCCCEEECcCCCCcccc
Confidence 3433 3 55 55555555555 5555555 455555555555555553 333
Q ss_pred cCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCc--cccCCCCCcEEecCccccccceeeccch
Q 047519 251 KTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPIN--WKSTLQSTVVLSTTEAEYMAITKAVKEA 328 (892)
Q Consensus 251 ~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~~~~n~l~~~~p~l 328 (892)
.+|..+++++ . .+..+++|++|++++|.++ .+|. .++++++|+.|+++ +|.+. .+|.+
T Consensus 532 ~iP~~i~~L~--------------~-~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls---~N~l~-~lp~~ 591 (876)
T 4ecn_A 532 QLKADWTRLA--------------D-DEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV---HNKVR-HLEAF 591 (876)
T ss_dssp HHHHHHHHHH--------------H-CTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECT---TSCCC-BCCCC
T ss_pred cchHHHHhhh--------------h-cccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECC---CCCcc-cchhh
Confidence 3332221100 0 1223347778888887777 6777 77777777777777 77776 66666
Q ss_pred hhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCC-CCEEECcCCcCCCccChhhcCCCCC--CCEEEcccCCCCCCcc
Q 047519 329 IWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELEN-LILLRLPSNRLSGTTELYDFAKLKN--LKWLFVSNNRLSLSTK 405 (892)
Q Consensus 329 ~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~ 405 (892)
+.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+| ..+..++. |+.|++++| .+.+.
T Consensus 592 -------~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N--~l~g~ 659 (876)
T 4ecn_A 592 -------GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYN--KIGSE 659 (876)
T ss_dssp -------CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSS--CTTTT
T ss_pred -------cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCC--cCCCc
Confidence 77777777777777777 67777777777 777777777776 555 45554433 777777777 44443
Q ss_pred ccCCC------CCCCccEEEccCCCCCCcchhh-hCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCC
Q 047519 406 LKVNS------SFPNLFGLGLSACNISEFPDIL-RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIE 478 (892)
Q Consensus 406 ~~~~~------~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 478 (892)
+|... ..++|+.|++++|.++.+|..+ ..+++|+.|+|++|++. .+|..+
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~---------------------- 716 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS---------------------- 716 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS----------------------
T ss_pred cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH----------------------
Confidence 33211 2234555555555555444433 24455555555555444 333222
Q ss_pred CCCCCCCCeeecCCCCcccEEECCCCccCcccccccc--CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccC-----
Q 047519 479 YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV--NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGN----- 551 (892)
Q Consensus 479 ~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~----- 551 (892)
+.... -.+.++++|+.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 717 ---~~~~~-~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 717 ---LKPKD-GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp ---SSCTT-SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ---hcccc-ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 11110 00112237778888888887 5677776 88889999999998886 788888888999998876
Q ss_pred -CCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519 552 -NQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP 609 (892)
Q Consensus 552 -N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 609 (892)
|++.+.+|.++..+++|+.|+|++|++ +.+|..+ . ++|+.|||++|++...-+
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--T--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--C--SSSCEEECCSCTTCEEEC
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC-CccCHhh--c--CCCCEEECCCCCCCccCh
Confidence 778888888888899999999999998 7777765 2 689999999998875444
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-50 Score=496.64 Aligned_cols=525 Identities=18% Similarity=0.164 Sum_probs=382.9
Q ss_pred ccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCC-CCcCcCCCCCCeEeCCCCCCccc
Q 047519 52 CSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEI-SSGFSQLRSLTLLNLSSSNFMGS 130 (892)
Q Consensus 52 c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~~L~Ls~n~~~~~ 130 (892)
|.|++|.+ ...+++.|||+++.+++..+. ++.++++|++|||++|.+.+. + |..|+++++|++|+|++|.+.+.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCccc
Confidence 67888887 446899999999999987777 899999999999999977665 5 78899999999999999999988
Q ss_pred cCCCCCcccCCCCceecCCcccCCcchhhh--hhcccCCCCCCCEEecCCccCcccccc-c-CCCCCCcccEEEccCCCC
Q 047519 131 IPASIDLINVSRLSTNYLPIFAFSDCFQLD--VKTTFLHDDLEEEIYMTQLDGFKVAEK-E-NWLQEESFIYLLLHVDDM 206 (892)
Q Consensus 131 ~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~--l~~~~~~l~~L~~L~L~~~~~~~~~~~-~-~~l~~~~L~~L~Ls~n~~ 206 (892)
.|..|+ ++++|++|+|++|...+.+|.. +. ++++|++|+|++|.+.+..+. . +++ ++|++|+|++|
T Consensus 89 ~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~----~L~~L~~L~Ls~N~l~~~~~~~~~~~L--~~L~~L~Ls~N-- 158 (844)
T 3j0a_A 89 HPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFR----NLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSN-- 158 (844)
T ss_dssp CTTSSC--SCSSCCCEECTTCCCSSCCSTTCCCS----SCSSCCEEEEESCCCCCCCCCGGGGTC--SSCCEEEEESS--
T ss_pred CHhHcc--CCcccCEeeCcCCCCCcccccCcccc----ccCCCCEEECCCCcccccccchhHhhC--CCCCEEECCCC--
Confidence 899999 9999999999998877777665 66 999999999999999887664 4 899 99999999999
Q ss_pred cCccCChhHHHHhhhcccccccccccccC--CCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCC
Q 047519 207 EIASKSKDEIEKLKTQLNQEFEMKDLGEA--KKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKR 284 (892)
Q Consensus 207 ~l~~~~p~~i~~l~~~~~~~~p~~~l~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L 284 (892)
.+++..| ..+..+ ++|+.|++++|.+.+..|..++.+++ .+.+ ..|
T Consensus 159 ~i~~~~~----------------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~---------------~~~~-~~L 206 (844)
T 3j0a_A 159 QIFLVCE----------------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN---------------PFRN-MVL 206 (844)
T ss_dssp CCCCCCS----------------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC---------------TTTT-CCB
T ss_pred cCCeeCH----------------HHcccccCCccceEECCCCccccccccchhhcCC---------------cccc-Cce
Confidence 9988888 566665 89999999999888776655543321 1111 258
Q ss_pred cEEEccCCCCCcCCCccccCC---CCCcEEecCccccccceee---------cc-chhhhhhccCC--CCCcCEEEccCC
Q 047519 285 RSITGYVFNFAGGPINWKSTL---QSTVVLSTTEAEYMAITKA---------VK-EAIWLQVFVRG--RRHYAEPHFSSN 349 (892)
Q Consensus 285 ~~L~L~~n~l~~~~p~~l~~l---~~L~~L~l~~~~~n~l~~~---------~p-~l~~l~l~~~~--l~~L~~L~Ls~n 349 (892)
++|++++|.+.+..|..+... +.++.|.++ .+..... .+ .+ .. .++|++|++++|
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~---~~~~~~~~~~~~l~~~~~~~f-------~~l~~~~L~~L~Ls~n 276 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILA---HHIMGAGFGFHNIKDPDQNTF-------AGLARSSVRHLDLSHG 276 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC---SSCCBCSSSCSSSTTGGGTTT-------TTTTTSCCCEEECTTC
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecc---cccccccccccccCCCChhhh-------hccccCCccEEECCCC
Confidence 888898888888777666543 567788776 4332211 11 22 33 478999999999
Q ss_pred cCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCc
Q 047519 350 QLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEF 428 (892)
Q Consensus 350 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~l 428 (892)
.+.+..|..|..+++|++|++++|.+++..+ ..|..+++|++|++++| .+.+..+..+ .+++|+.|++++|.++.+
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 353 (844)
T 3j0a_A 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYN--LLGELYSSNFYGLPKVAYIDLQKNHIAII 353 (844)
T ss_dssp CCCEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESC--CCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred cccccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCC--CCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence 9998889999999999999999999987666 78999999999999999 5556656556 899999999999999966
Q ss_pred c-hhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccC
Q 047519 429 P-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFN 507 (892)
Q Consensus 429 p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~ 507 (892)
+ ..+..+++|++|++++|.+++. +. + ++|+.|++++|+++..+.. . ..++.|++++|++.
T Consensus 354 ~~~~~~~l~~L~~L~Ls~N~l~~i-~~----~--~~L~~L~l~~N~l~~l~~~-~-----------~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 354 QDQTFKFLEKLQTLDLRDNALTTI-HF----I--PSIPDIFLSGNKLVTLPKI-N-----------LTANLIHLSENRLE 414 (844)
T ss_dssp CSSCSCSCCCCCEEEEETCCSCCC-SS----C--CSCSEEEEESCCCCCCCCC-C-----------TTCCEEECCSCCCC
T ss_pred ChhhhcCCCCCCEEECCCCCCCcc-cC----C--CCcchhccCCCCccccccc-c-----------cccceeecccCccc
Confidence 5 4688899999999999999853 22 3 8899999999988754221 1 15566677777666
Q ss_pred ccc-cccccCCCCCCEEEccCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCC
Q 047519 508 GKI-SQKFVNSCNLTNLNLNGNRLEGPLPL-SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDN 585 (892)
Q Consensus 508 ~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 585 (892)
+.. +..+..+++|++|++++|++++..+. .+..+++|++|++++|.++...+. +..+..
T Consensus 415 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~-------------------~~~~~~ 475 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET-------------------ELCWDV 475 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS-------------------CCCSSC
T ss_pred cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc-------------------ccchhh
Confidence 532 22234566666666666666543322 233455555666666555421110 111122
Q ss_pred CCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheee
Q 047519 586 TTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTI 665 (892)
Q Consensus 586 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 665 (892)
+ ..+++|++|+|++|++++..|..+ .+ +++|+.|
T Consensus 476 ~--~~l~~L~~L~Ls~N~l~~~~~~~~-~~-------------------------------------------l~~L~~L 509 (844)
T 3j0a_A 476 F--EGLSHLQVLYLNHNYLNSLPPGVF-SH-------------------------------------------LTALRGL 509 (844)
T ss_dssp S--SCBCCEECCCCCHHHHTTCCTTSS-SS-------------------------------------------CCSCSEE
T ss_pred h--cCcccccEEECCCCcccccChhHc-cc-------------------------------------------hhhhhee
Confidence 2 445555555555555554443221 10 3455556
Q ss_pred ecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCc
Q 047519 666 DLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIP 726 (892)
Q Consensus 666 dLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 726 (892)
+|++|++++..|..+. ++|+.|+ |++|+|++.+|..| .+|+.|++++|.+.+..+
T Consensus 510 ~Ls~N~l~~l~~~~~~--~~L~~L~-Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 510 SLNSNRLTVLSHNDLP--ANLEILD-ISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEESCCCSSCCCCCCC--SCCCEEE-EEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred ECCCCCCCccChhhhh--ccccEEE-CCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 6666666544444443 5677777 77777777777654 367778888888776543
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5e-50 Score=477.10 Aligned_cols=518 Identities=17% Similarity=0.140 Sum_probs=363.0
Q ss_pred CeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCC
Q 047519 64 GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRL 143 (892)
Q Consensus 64 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L 143 (892)
.+++.|+|+++.+++..+. ++.++++|++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|..|+ ++++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFS--GLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSST--TCTTC
T ss_pred CCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcC--CcccC
Confidence 5799999999999987776 899999999999999999985 678899999999999999999988899999 77778
Q ss_pred ceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcc-ccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhh
Q 047519 144 STNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFK-VAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKT 221 (892)
Q Consensus 144 ~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~ 221 (892)
++|+++++...+..|..++ ++++|++|++++|.+.+ ..|.. +++ ++|++|++++| .+++..|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~Ls~n--~l~~~~~-------- 170 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIG----QLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHVDLSYN--YIQTITV-------- 170 (606)
T ss_dssp CEEECTTSCCCCSSSSCCT----TCTTCCEEECCSSCCCCCCCCGGGGTC--TTCCEEECCSS--CCCEECT--------
T ss_pred CEEEccCCccccccccccC----CCCCCCEEeCCCCcccceechHhHhhc--CCCCEEEccCC--cceecCh--------
Confidence 8777777664444445555 77777777777776654 33544 666 66666666666 6665555
Q ss_pred cccccccccccccCCC----CCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-
Q 047519 222 QLNQEFEMKDLGEAKK----ILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG- 296 (892)
Q Consensus 222 ~~~~~~p~~~l~~l~~----L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~- 296 (892)
..++.+++ +++|++++|.+.+ ++. ......+|++|++++|.+.+
T Consensus 171 --------~~~~~l~~L~~~l~~L~l~~n~l~~----------------------~~~-~~~~~~~L~~L~L~~n~~~~~ 219 (606)
T 3vq2_A 171 --------NDLQFLRENPQVNLSLDMSLNPIDF----------------------IQD-QAFQGIKLHELTLRGNFNSSN 219 (606)
T ss_dssp --------TTTHHHHHCTTCCCEEECTTCCCCE----------------------ECT-TTTTTCEEEEEEEESCCSCHH
T ss_pred --------hhhhhhhccccccceeeccCCCcce----------------------eCc-ccccCceeeeeeccCCccchh
Confidence 33333333 3356666654432 222 22233367777777777663
Q ss_pred CCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEEC-cCCcC
Q 047519 297 GPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRL-PSNRL 375 (892)
Q Consensus 297 ~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-~~n~l 375 (892)
.+|..+.++++|+.+++. .+.+.+. ..++ .+....+..+..+ .++.+++ ..|.+
T Consensus 220 ~~~~~~~~l~~L~~l~l~---~~~~~~~--------------~~l~-------~~~~~~~~~l~~l-~l~~l~l~~~~~~ 274 (606)
T 3vq2_A 220 IMKTCLQNLAGLHVHRLI---LGEFKDE--------------RNLE-------IFEPSIMEGLCDV-TIDEFRLTYTNDF 274 (606)
T ss_dssp HHHHHHHTTTTCEEEEEE---EECCTTS--------------CCCS-------CCCGGGGTTGGGS-EEEEEEECCCTTC
T ss_pred HHHHHhcccccccccccc---ccccccC--------------Cccc-------ccChHHhhhhhhc-cHhheeccccccc
Confidence 456667777777777665 3222110 0000 0000111112222 3445555 44555
Q ss_pred CCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchh
Q 047519 376 SGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSW 455 (892)
Q Consensus 376 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~ 455 (892)
.+.++ . +..+++|+.|++++|.+ ..++....+++|++|++++|.++.+|. + .+++|++|++++|...+.+ .
T Consensus 275 ~~~~~-~-~~~l~~L~~L~l~~~~~---~~l~~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~--~ 345 (606)
T 3vq2_A 275 SDDIV-K-FHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF--K 345 (606)
T ss_dssp CGGGG-S-CGGGTTCSEEEEESCCC---CCCCCCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC--C
T ss_pred ccccc-c-cccCCCCCEEEecCccc---hhhhhccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCccch--h
Confidence 55555 2 55666666666666632 122322255666666666666666663 3 6677777777777544333 2
Q ss_pred hhhhCCCcccEEEccCCCCCCCC--CCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCC
Q 047519 456 MWDLGITALYYLDLSNNFLTNIE--YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGP 533 (892)
Q Consensus 456 ~~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 533 (892)
+..+ ++|++|++++|.+++.. +..+..+. +|++|++++|.+.+ +|..+..+++|++|++++|++.+.
T Consensus 346 ~~~l--~~L~~L~ls~n~l~~~~~~~~~~~~~~--------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 346 KVAL--PSLSYLDLSRNALSFSGCCSYSDLGTN--------SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CCCC--TTCCEEECCSSCEEEEEECCHHHHCCS--------CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred hccC--CCCCEEECcCCccCCCcchhhhhccCC--------cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 3334 67777777777666542 32223332 67777777777764 557788888999999999999877
Q ss_pred CC-ccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCC-CCCCCCCcCCCCccEEEcCCCCCcCcCCcc
Q 047519 534 LP-LSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGDNTTIVPFPRFRIIDLSHNEFTGVLPTG 611 (892)
Q Consensus 534 ~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 611 (892)
.| ..+..+++|++|++++|++++..|..+..+++|++|++++|++++. +|..+ ..+++|++|++++|++++..|..
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTT
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhh
Confidence 77 6788899999999999999988888899999999999999999874 66666 78899999999999999777654
Q ss_pred hhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccc
Q 047519 612 YLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN 691 (892)
Q Consensus 612 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~ 691 (892)
+ .+ +++|+.|++++|++++.+|..++++++|+.|+
T Consensus 493 ~-~~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~- 527 (606)
T 3vq2_A 493 F-DT-------------------------------------------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD- 527 (606)
T ss_dssp T-TT-------------------------------------------CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE-
T ss_pred h-cc-------------------------------------------cccCCEEECCCCcCCCcCHHHccCCCcCCEEE-
Confidence 2 21 67899999999999998899999999999999
Q ss_pred cCCCCCCCCcchhccCCC-CCCeeeCCCCcCCCCCc
Q 047519 692 ISHNNLTGDIPSLLRNLT-EVESLDLSSNMLVGHIP 726 (892)
Q Consensus 692 Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~ip 726 (892)
+++|+|+ .+|..+..++ +|+.|++++|.+.+..+
T Consensus 528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999 7888899997 69999999999997655
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.7e-47 Score=443.74 Aligned_cols=493 Identities=16% Similarity=0.118 Sum_probs=307.8
Q ss_pred CccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccc
Q 047519 51 CCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGS 130 (892)
Q Consensus 51 ~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~ 130 (892)
.|.|.|| |+.. +++++ .+|. .+. ++|++|||++|.+++. .|..|+++++|++|+|++|.+.+.
T Consensus 3 ~C~~~~~-c~~~----------~~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDGR----------SRSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EECT----------TSCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EECC----------CCccc-cccc--cCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence 4999998 8643 34444 4555 343 7899999999999885 678899999999999999999987
Q ss_pred cCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCcc
Q 047519 131 IPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIAS 210 (892)
Q Consensus 131 ~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~ 210 (892)
.|..++ ++++|++|+++++.+.+..|..++ ++++|++|++ ++| .+++
T Consensus 66 ~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L-------------------------s~n--~l~~ 112 (549)
T 2z81_A 66 EGDAFY--SLGSLEHLDLSDNHLSSLSSSWFG----PLSSLKYLNL-------------------------MGN--PYQT 112 (549)
T ss_dssp CTTTTT--TCTTCCEEECTTSCCCSCCHHHHT----TCTTCCEEEC-------------------------TTC--CCSS
T ss_pred Chhhcc--ccccCCEEECCCCccCccCHHHhc----cCCCCcEEEC-------------------------CCC--cccc
Confidence 778888 666666666655554444344444 4444444444 444 4433
Q ss_pred -CChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEc
Q 047519 211 -KSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITG 289 (892)
Q Consensus 211 -~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L 289 (892)
..| ..++++++|++|++++|.+. +.+|...+.++++|++|++
T Consensus 113 ~~~~----------------~~~~~l~~L~~L~L~~n~~~---------------------~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 113 LGVT----------------SLFPNLTNLQTLRIGNVETF---------------------SEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp SCSS----------------CSCTTCTTCCEEEEEESSSC---------------------CEECTTTTTTCCEEEEEEE
T ss_pred cchh----------------hhhhccCCccEEECCCCccc---------------------cccCHhhhhcccccCeeec
Confidence 123 34555556666666655322 1222115566666777777
Q ss_pred cCCCCCcCCCccccCCCCCcEEecCccccccceeecc--chhhhhhccCCCCCcCEEEccCCcCCcCC--C-ccccCCCC
Q 047519 290 YVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK--EAIWLQVFVRGRRHYAEPHFSSNQLSGSI--P-SSVYELEN 364 (892)
Q Consensus 290 ~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p--~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~--p-~~l~~l~~ 364 (892)
++|.+++..|..++.+++|++|+++ .|.+. .+| .+ ..+++|++|++++|.+++.. | .....+++
T Consensus 156 ~~n~l~~~~~~~l~~l~~L~~L~l~---~n~~~-~~~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 156 KALSLRNYQSQSLKSIRDIHHLTLH---LSESA-FLLEIFA-------DILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEE---CSBST-THHHHHH-------HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred cCCcccccChhhhhccccCceEecc---cCccc-ccchhhH-------hhcccccEEEccCCccccccccccchhhhhhc
Confidence 7777776666677777777777776 65543 223 23 45677777777777776532 1 12234567
Q ss_pred CCEEECcCCcCCCccCh---hhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEE
Q 047519 365 LILLRLPSNRLSGTTEL---YDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWF 441 (892)
Q Consensus 365 L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 441 (892)
|+.|++++|.+++..+. ..+..+++|+.+++++|.+.-.+..+.. ....+..+++|+.|
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~------------------~~~~~~~l~~L~~L 286 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS------------------ESDVVSELGKVETV 286 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC------------------TTTCCCCCTTCCEE
T ss_pred ccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc------------------chhhhhhhcccccc
Confidence 77777777766543321 2234566677777777632111111000 00112334445555
Q ss_pred EccCCCCCCC-----CchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccc-c
Q 047519 442 NLSKNRIHGR-----ISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKF-V 515 (892)
Q Consensus 442 ~Ls~n~l~~~-----~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~-~ 515 (892)
++.++.+... ++..+... + +|+.|++++|.+. .+|..+ .
T Consensus 287 ~l~~~~i~~~~~~~~l~~~~~~~--~--------------------------------~L~~L~l~~n~l~-~ip~~~~~ 331 (549)
T 2z81_A 287 TIRRLHIPQFYLFYDLSTVYSLL--E--------------------------------KVKRITVENSKVF-LVPCSFSQ 331 (549)
T ss_dssp EEESCBCSCGGGSCCCCHHHHHS--T--------------------------------TCCEEEEESSCCC-CCCHHHHH
T ss_pred cccccccchhhhcccchhhhhhc--c--------------------------------cceEEEeccCccc-cCCHHHHh
Confidence 5555543311 11111111 2 3344444444443 233333 3
Q ss_pred CCCCCCEEEccCCCCCCCCCc---cccCCCCCcEEEccCCCCCCCcc--hhccCCCCCCEEEccCCcCCCCCCCCCCCcC
Q 047519 516 NSCNLTNLNLNGNRLEGPLPL---SLVNCHHLEVLDVGNNQINDNFP--NWLEILPELQVLILRSNRFWGPIGDNTTIVP 590 (892)
Q Consensus 516 ~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 590 (892)
.+++|++|++++|++++.+|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+ ..
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~ 408 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC--QW 408 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC--CC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh--cc
Confidence 456666666666666654432 25566677777777777766322 34666777777777777775 455544 56
Q ss_pred CCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCC
Q 047519 591 FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSN 670 (892)
Q Consensus 591 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 670 (892)
+++|++|++++|+++ .+|... +++|+.||+++|
T Consensus 409 ~~~L~~L~Ls~N~l~-~l~~~~----------------------------------------------~~~L~~L~Ls~N 441 (549)
T 2z81_A 409 PEKMRFLNLSSTGIR-VVKTCI----------------------------------------------PQTLEVLDVSNN 441 (549)
T ss_dssp CTTCCEEECTTSCCS-CCCTTS----------------------------------------------CTTCSEEECCSS
T ss_pred cccccEEECCCCCcc-cccchh----------------------------------------------cCCceEEECCCC
Confidence 677888888888776 233221 346788888888
Q ss_pred cCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519 671 KFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750 (892)
Q Consensus 671 ~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 750 (892)
++++.+ ..+++|++|+ |++|+|+ .+|. ...+++|++|||++|++++.+|..|..+++|+.|++++|+++|.+|
T Consensus 442 ~l~~~~----~~l~~L~~L~-Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 442 NLDSFS----LFLPRLQELY-ISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSCCC----CCCTTCCEEE-CCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred Chhhhc----ccCChhcEEE-CCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 888643 5788899998 9999998 6776 5789999999999999999989889999999999999999999888
Q ss_pred C
Q 047519 751 Q 751 (892)
Q Consensus 751 ~ 751 (892)
.
T Consensus 515 ~ 515 (549)
T 2z81_A 515 R 515 (549)
T ss_dssp H
T ss_pred c
Confidence 4
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-46 Score=443.44 Aligned_cols=494 Identities=17% Similarity=0.160 Sum_probs=330.1
Q ss_pred CCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCC
Q 047519 90 PHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDD 169 (892)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~ 169 (892)
+++++|||++|.+++. .+..|.++++|++|+|++|.+.+..|..|+ +++
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~------------------------------~l~ 76 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQ------------------------------SLS 76 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTT------------------------------TCT
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCccccc------------------------------Cch
Confidence 4688888888888774 456788888888888888887765555565 677
Q ss_pred CCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCC
Q 047519 170 LEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRT 248 (892)
Q Consensus 170 ~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~ 248 (892)
+|++|+|++|.+.+..+.. ..+ ++|++|++++| .+++..+ ..++++++|++|++++|.+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n--~l~~l~~----------------~~~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 77 HLSTLILTGNPIQSLALGAFSGL--SSLQKLVAVET--NLASLEN----------------FPIGHLKTLKELNVAHNLI 136 (570)
T ss_dssp TCCEEECTTCCCCEECTTTTTTC--TTCCEEECTTS--CCCCSTT----------------CSCTTCTTCCEEECCSSCC
T ss_pred hCCEEeCcCCcCCccCHhhhcCc--ccccccccccc--ccccCCC----------------ccccccccccEEecCCCcc
Confidence 7777777777777666555 777 77888888777 6655443 4566677777777776644
Q ss_pred CCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCC----cEEecCccccccceee
Q 047519 249 CGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQST----VVLSTTEAEYMAITKA 324 (892)
Q Consensus 249 ~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~l~~~~~n~l~~~ 324 (892)
.+. .+|. .++++++|++|++++|.+++..|..++.+++| +.|+++ +|.+.+.
T Consensus 137 ~~~--------------------~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~---~n~l~~~ 192 (570)
T 2z63_A 137 QSF--------------------KLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS---LNPMNFI 192 (570)
T ss_dssp CCC--------------------CCCG-GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT---TCCCCEE
T ss_pred cee--------------------cChh-hhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC---CCCceec
Confidence 321 2344 56666677777777777666555666665555 566666 6666555
Q ss_pred cc-chhhhhhccCCCCCcCEEEccCCcCCc-CCCccccCCCCCCEEECcCCcCCC-----ccChhhcCCCCCCCEEEccc
Q 047519 325 VK-EAIWLQVFVRGRRHYAEPHFSSNQLSG-SIPSSVYELENLILLRLPSNRLSG-----TTELYDFAKLKNLKWLFVSN 397 (892)
Q Consensus 325 ~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L~Ls~ 397 (892)
.| .+ ... +|++|++++|.... .++..+..+++++.+.+....+.. .++...+..++++
T Consensus 193 ~~~~~-------~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l------- 257 (570)
T 2z63_A 193 QPGAF-------KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL------- 257 (570)
T ss_dssp CTTTT-------TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS-------
T ss_pred CHHHh-------ccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc-------
Confidence 55 33 222 56666666553321 233444555555554443222110 1111111111111
Q ss_pred CCCCCCccccCCCCCCCccEEEccCC-CCC-CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCC
Q 047519 398 NRLSLSTKLKVNSSFPNLFGLGLSAC-NIS-EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT 475 (892)
Q Consensus 398 n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 475 (892)
.++.++++++ .+. .+|..+..+++|+.|++++|.+. .+|.++..+ +|+.|++++|.+.
T Consensus 258 ----------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~---~L~~L~l~~n~~~ 317 (570)
T 2z63_A 258 ----------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF---GWQHLELVNCKFG 317 (570)
T ss_dssp ----------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC---CCSEEEEESCBCS
T ss_pred ----------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC---CccEEeeccCccc
Confidence 2334444444 222 34455555566666666666555 344443321 5566666666555
Q ss_pred CCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCC--CccccCCCCCcEEEccCCC
Q 047519 476 NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL--PLSLVNCHHLEVLDVGNNQ 553 (892)
Q Consensus 476 ~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~N~ 553 (892)
..+.. .+ ++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. |..+..+++|++|++++|+
T Consensus 318 ~l~~~---~l--------~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 384 (570)
T 2z63_A 318 QFPTL---KL--------KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384 (570)
T ss_dssp SCCBC---BC--------SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred ccCcc---cc--------cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc
Confidence 33221 11 2556666666666554443 56777888888888877543 5667788888888888888
Q ss_pred CCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccC
Q 047519 554 INDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMT 633 (892)
Q Consensus 554 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~ 633 (892)
+.+..+ .+..+++|++|++++|.+.+..+.. .+..+++|++|++++|.+++..|..+ .
T Consensus 385 l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~------------------- 442 (570)
T 2z63_A 385 VITMSS-NFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIF-N------------------- 442 (570)
T ss_dssp EEEEEE-EEETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEECTTSCCEECCTTTT-T-------------------
T ss_pred cccccc-cccccCCCCEEEccCCccccccchh-hhhcCCCCCEEeCcCCcccccchhhh-h-------------------
Confidence 877444 4778888888888888887765522 12778889999999998887666432 1
Q ss_pred CCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCC-CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCC
Q 047519 634 PLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVE 712 (892)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~ 712 (892)
.+++|+.|++++|+++ +.+|..++.+++|+.|+ +++|++++..|..|+++++|+
T Consensus 443 ------------------------~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 443 ------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD-LSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp ------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE-CTTSCCCEECTTTTTTCTTCC
T ss_pred ------------------------cCCcCcEEECcCCcCccccchhhhhcccCCCEEE-CCCCccccCChhhhhcccCCC
Confidence 1677889999999987 57888999999999998 999999988899999999999
Q ss_pred eeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCC
Q 047519 713 SLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753 (892)
Q Consensus 713 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 753 (892)
.|+|++|++++..|..|..+++|+.|++++|+++|.+|...
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 99999999999888899999999999999999999999754
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.5e-46 Score=442.14 Aligned_cols=451 Identities=16% Similarity=0.137 Sum_probs=326.5
Q ss_pred CcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCC------CC------cCCccccCCCC
Q 047519 194 ESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRT------CG------KTMDVGLLFEQ 261 (892)
Q Consensus 194 ~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~------~~------~~~~~l~~l~~ 261 (892)
.+++.|+|+++ .+.|.+| ..++++++|++|+|++|.+ .+ .+|... +..
T Consensus 81 ~~V~~L~L~~~--~l~g~lp----------------~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~ 140 (636)
T 4eco_A 81 GRVTGLSLEGF--GASGRVP----------------DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQK 140 (636)
T ss_dssp CCEEEEECTTS--CCEEEEC----------------GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHH
T ss_pred CCEEEEEecCc--ccCCcCC----------------hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHH
Confidence 47889999999 8888888 8999999999999999965 22 222222 222
Q ss_pred cceec---ccceeecChhhhcC-CCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccC
Q 047519 262 DDTLG---QSVNGYVDSDYIGD-LDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVR 336 (892)
Q Consensus 262 L~~L~---~~~~~~~p~~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~ 336 (892)
|+ ++ +.+.+.+|. .+.. +..+..+++....+.. .....++.+.+. ...|.+++ +| .+ +
T Consensus 141 l~-l~l~~~~l~~~~~~-~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~-~~~n~l~~-ip~~l-------~ 203 (636)
T 4eco_A 141 MR-MHYQKTFVDYDPRE-DFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIG-QLSNNITF-VSKAV-------M 203 (636)
T ss_dssp HH-THHHHHHTCCCGGG-GSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTT-CCSCEEEE-ECGGG-------G
T ss_pred HH-hhHHHhhhccCchh-hHHHHHHHHhhcCcccccccc------ccccchhhhhhc-cccCCCcc-CCHHH-------h
Confidence 22 22 333333333 2221 1111111211111110 011122222222 01466777 77 77 7
Q ss_pred CCCCcCEEEccCCcCCcC-----------------CCcccc--CCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEccc
Q 047519 337 GRRHYAEPHFSSNQLSGS-----------------IPSSVY--ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSN 397 (892)
Q Consensus 337 ~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 397 (892)
++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+| ..+.++++|++|++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcC
Confidence 788888888888888775 788877 88888888888888887777 7778888888888888
Q ss_pred CCCC-CCc-cccCCC-CC------CCccEEEccCCCCCCcch--hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccE
Q 047519 398 NRLS-LST-KLKVNS-SF------PNLFGLGLSACNISEFPD--ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466 (892)
Q Consensus 398 n~l~-~~~-~~~~~~-~l------~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~ 466 (892)
| . +.+ .+|..+ .+ ++|++|++++|+++.+|. .++.+++|++|++++|++.|.+| .+..+ ++|++
T Consensus 283 n--~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l--~~L~~ 357 (636)
T 4eco_A 283 N--RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE--IKLAS 357 (636)
T ss_dssp C--TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE--EEESE
T ss_pred C--CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC--CCCCE
Confidence 8 5 555 555444 33 788888888888888887 88888889999999998888888 67776 88888
Q ss_pred EEccCCCCCCCCCCCCCCCCeeecCCCCc-ccEEECCCCccCccccccccCCC--CCCEEEccCCCCCCCCCcccc----
Q 047519 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLT-HKVLDMRMNNFNGKISQKFVNSC--NLTNLNLNGNRLEGPLPLSLV---- 539 (892)
Q Consensus 467 L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~l~---- 539 (892)
|++++|+++ .+|..+..+. + |++|++++|.++ .+|..+..+. +|++|++++|.+++.+|..+.
T Consensus 358 L~L~~N~l~-~lp~~l~~l~--------~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGFT--------EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EECCSSEEE-ECCTTSEEEC--------TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred EECCCCccc-cccHhhhhhc--------ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 899888888 4454455544 6 888888888888 6777776654 889999999999888888887
Q ss_pred ---CCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcC-------CCCccEEEcCCCCCcCcCC
Q 047519 540 ---NCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVP-------FPRFRIIDLSHNEFTGVLP 609 (892)
Q Consensus 540 ---~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------l~~L~~L~Ls~N~l~~~~p 609 (892)
.+++|++|++++|+++...+..+..+++|++|++++|+++ .+|.... .. +++|++|++++|+++ .+|
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSL-KDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS-EETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHh-ccccccccccCCccEEECcCCcCC-ccC
Confidence 7788999999999988644445567889999999999887 5554431 22 228899999999988 666
Q ss_pred cchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccc
Q 047519 610 TGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 689 (892)
Q Consensus 610 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L 689 (892)
..+.. ..+++|+.|+|++|++++ +|..++++++|+.|
T Consensus 505 ~~~~~------------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L 541 (636)
T 4eco_A 505 DDFRA------------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541 (636)
T ss_dssp GGGST------------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred hhhhh------------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence 54320 016778899999999996 88889999999999
Q ss_pred ccc------CCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519 690 NNI------SHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747 (892)
Q Consensus 690 ~~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 747 (892)
+ | ++|++.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.|++++|++..
T Consensus 542 ~-Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 542 G-IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp E-CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred E-CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 8 8 56888889999999999999999999999 58888766 789999999998874
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-44 Score=421.79 Aligned_cols=485 Identities=18% Similarity=0.118 Sum_probs=404.6
Q ss_pred CeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCC
Q 047519 64 GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRL 143 (892)
Q Consensus 64 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L 143 (892)
.+++.|+|+++.+++..+. ++..+++|++|||++|.+++. .|..|+++++|++|+|++|.+.+..|..|+ ++++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTC
T ss_pred ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhc--Ccccc
Confidence 4689999999999977666 899999999999999999885 567899999999999999999987778999 99999
Q ss_pred ceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcc-ccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhh
Q 047519 144 STNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFK-VAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKT 221 (892)
Q Consensus 144 ~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~ 221 (892)
++|+++++.....-+..++ ++++|++|++++|.+.+ ..|.. +++ ++|++|++++| .+++..|
T Consensus 103 ~~L~L~~n~l~~l~~~~~~----~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~l~~n--~l~~~~~-------- 166 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSN--KIQSIYC-------- 166 (570)
T ss_dssp CEEECTTSCCCCSTTCSCT----TCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECTTS--CCCEECG--------
T ss_pred ccccccccccccCCCcccc----ccccccEEecCCCccceecChhhhccc--CCCCEEeCcCC--ccceecH--------
Confidence 9999999874443333566 99999999999999987 45766 889 99999999999 8888777
Q ss_pred cccccccccccccCCCC----CEEEcccCCCCCcCCccccCCCCcceec--ccce--eecChhhhcCCCCCcEEEccCCC
Q 047519 222 QLNQEFEMKDLGEAKKI----LGMEICRNRTCGKTMDVGLLFEQDDTLG--QSVN--GYVDSDYIGDLDKRRSITGYVFN 293 (892)
Q Consensus 222 ~~~~~~p~~~l~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~--~~~~--~~~p~~~l~~l~~L~~L~L~~n~ 293 (892)
..++.+++| ++|++++|.+.+..+..+... +|+.|+ +... ..++. .+..+++++.+.+....
T Consensus 167 --------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~-~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 167 --------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT-CIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp --------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH-HHHTTTTCEEEEEEEEE
T ss_pred --------HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhh-hhcCccccceeeecccc
Confidence 666677777 899999999998888777766 788887 2221 23445 67788888877665432
Q ss_pred CCc------CCCccccCCC--CCcEEecCccccc-cceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCC
Q 047519 294 FAG------GPINWKSTLQ--STVVLSTTEAEYM-AITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELE 363 (892)
Q Consensus 294 l~~------~~p~~l~~l~--~L~~L~l~~~~~n-~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 363 (892)
+.. .....+..++ .++.++++ ++ .+.+.+| .+ ..+++|++|++++|.++ .+|..+..+
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~---~~~~~~~~~~~~~-------~~l~~L~~L~l~~~~l~-~l~~~~~~~- 304 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLA---YLDYYLDDIIDLF-------NCLTNVSSFSLVSVTIE-RVKDFSYNF- 304 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEE---ETTEEESCSTTTT-------GGGTTCSEEEEESCEEC-SCCBCCSCC-
T ss_pred ccCchhhhhcchhhhccccccchhhhhhh---cchhhhhhchhhh-------cCcCcccEEEecCccch-hhhhhhccC-
Confidence 221 1112222232 35667776 66 6666777 77 88999999999999998 688889888
Q ss_pred CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCc---chhhhCCCCccE
Q 047519 364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEF---PDILRTLHQLQW 440 (892)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~ 440 (892)
+|++|++++|.+. .+|. ..+++|++|++++| ...+..+. ..+++|++|++++|.++.+ |..+..+++|++
T Consensus 305 ~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n--~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 305 GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSN--KGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESC--BSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred CccEEeeccCccc-ccCc---ccccccCEEeCcCC--cccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence 9999999999998 6662 57899999999999 44444443 4789999999999999854 788999999999
Q ss_pred EEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCC-CCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCC
Q 047519 441 FNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN 519 (892)
Q Consensus 441 L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 519 (892)
|++++|.+.+..+. +..+ ++|+.|++++|.+.+..+ ..+..++ +|++|++++|.+.+..|..+..+++
T Consensus 378 L~l~~n~l~~~~~~-~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 378 LDLSFNGVITMSSN-FLGL--EQLEHLDFQHSNLKQMSEFSVFLSLR--------NLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp EECCSCSEEEEEEE-EETC--TTCCEEECTTSEEESCTTSCTTTTCT--------TCCEEECTTSCCEECCTTTTTTCTT
T ss_pred EECCCCcccccccc-cccc--CCCCEEEccCCccccccchhhhhcCC--------CCCEEeCcCCcccccchhhhhcCCc
Confidence 99999999865554 7777 999999999999998765 4455555 8999999999999999999999999
Q ss_pred CCEEEccCCCCC-CCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEE
Q 047519 520 LTNLNLNGNRLE-GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIID 598 (892)
Q Consensus 520 L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 598 (892)
|++|++++|.++ +.+|..+..+++|++|++++|++++..|.++..+++|++|++++|++++..+..+ ..+++|+.|+
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 524 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRLTSLQKIW 524 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEE
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcccCCcEEE
Confidence 999999999997 5789999999999999999999999889999999999999999999998877766 8899999999
Q ss_pred cCCCCCcCcCCcc
Q 047519 599 LSHNEFTGVLPTG 611 (892)
Q Consensus 599 Ls~N~l~~~~p~~ 611 (892)
+++|++++..|..
T Consensus 525 l~~N~~~~~~~~~ 537 (570)
T 2z63_A 525 LHTNPWDCSCPRI 537 (570)
T ss_dssp CCSSCBCCCTTTT
T ss_pred ecCCcccCCCcch
Confidence 9999999998864
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.5e-44 Score=426.06 Aligned_cols=563 Identities=17% Similarity=0.106 Sum_probs=348.3
Q ss_pred hcccCCcCCCCCCCCCCccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCC
Q 047519 35 YQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQL 114 (892)
Q Consensus 35 ~~~~~~~l~~w~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l 114 (892)
|.+...++++|..+. +..|+.-.|......| +=++.+++ .+|. .+. +.+++|||++|.|++. .|.+|.++
T Consensus 6 ~~~~~~~~~~~~~~~-p~~~~~c~~~~~~~~~---~c~~~~l~-~vP~--~lp--~~~~~LdLs~N~i~~l-~~~~f~~l 75 (635)
T 4g8a_A 6 YKDDDDKLAAANSSI-PESWEPCVEVVPNITY---QCMELNFY-KIPD--NLP--FSTKNLDLSFNPLRHL-GSYSFFSF 75 (635)
T ss_dssp --------------------CCSEEEETTTEE---ECTTSCCS-SCCS--SSC--TTCCEEECTTSCCCEE-CTTTTTTC
T ss_pred cCCCcchhhcccCCC-CCCCCCccccCCCCEE---ECCCCCcC-ccCC--CCC--cCCCEEEeeCCCCCCC-CHHHHhCC
Confidence 333445788887432 3345433333221112 33344555 4554 332 4799999999999984 45689999
Q ss_pred CCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCC
Q 047519 115 RSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQE 193 (892)
Q Consensus 115 ~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~ 193 (892)
++|++|||++|.+++..|.+|+ +|++|++|+|++|.+.+-.+..+. ++++|++|+|++|.+.+..+.. +++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~----~L~~L~~L~Ls~N~l~~l~~~~~~~L-- 147 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHL-- 147 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGT----TCTTCCEEECTTSCCCCSTTCCCTTC--
T ss_pred CCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhc----CCCCCCEEECCCCcCCCCChhhhhcC--
Confidence 9999999999999876677788 777777777777663333333455 6777777777766666554444 566
Q ss_pred CcccEEEccCCCCcCccC-ChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceee
Q 047519 194 ESFIYLLLHVDDMEIASK-SKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGY 272 (892)
Q Consensus 194 ~~L~~L~Ls~n~~~l~~~-~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~ 272 (892)
++|++|+|++| .+++. .| ..++.+++|++|++++|.+.+..+..+.
T Consensus 148 ~~L~~L~Ls~N--~l~~~~~~----------------~~~~~l~~L~~L~L~~N~l~~~~~~~l~--------------- 194 (635)
T 4g8a_A 148 KTLKELNVAHN--LIQSFKLP----------------EYFSNLTNLEHLDLSSNKIQSIYCTDLR--------------- 194 (635)
T ss_dssp TTCCEEECCSS--CCCCCCCC----------------GGGGGCTTCCEEECCSSCCCEECGGGGH---------------
T ss_pred cccCeeccccC--ccccCCCc----------------hhhccchhhhhhcccCcccccccccccc---------------
Confidence 66666666666 55432 33 4455555566666655544433222221
Q ss_pred cChhhhcCCC-CCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcC
Q 047519 273 VDSDYIGDLD-KRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQL 351 (892)
Q Consensus 273 ~p~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l 351 (892)
.+.+++ .+..++++.|.+....+..+ ....++.+++. +|.....++
T Consensus 195 ----~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~---~n~~~~~~~------------------------- 241 (635)
T 4g8a_A 195 ----VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLR---NNFDSLNVM------------------------- 241 (635)
T ss_dssp ----HHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEE---SCCSSHHHH-------------------------
T ss_pred ----chhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhh---ccccccccc-------------------------
Confidence 111111 12345555555443222222 22233444444 333222211
Q ss_pred CcCCCccccCCCCCCEEECcCCc------CCCccChhhcCCCCCCCEEEcccCCCCCC-ccccCCC-CCCCccEEEccCC
Q 047519 352 SGSIPSSVYELENLILLRLPSNR------LSGTTELYDFAKLKNLKWLFVSNNRLSLS-TKLKVNS-SFPNLFGLGLSAC 423 (892)
Q Consensus 352 ~~~~p~~l~~l~~L~~L~L~~n~------l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~-~l~~L~~L~L~~n 423 (892)
+..+..+..++...+..+. +..... ..+..+..+...++..+..... ....... ...+++.+.+.++
T Consensus 242 ----~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 242 ----KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp ----HHHHHTTTTCEEEEEEEECCTTSCCCSCCCT-TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred ----chhhcCCcccccccccccccccccccccccc-cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence 1223333444333332211 111111 2333344444444444311111 1111112 4566677777766
Q ss_pred CCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCC
Q 047519 424 NISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM 503 (892)
Q Consensus 424 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~ 503 (892)
.+..++. +.....|+.|++.+|.+.+..+.. + ..|+.+++..|.+..... ...+ ++|+.++++.
T Consensus 317 ~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~---l--~~L~~l~l~~n~~~~~~~--~~~l--------~~L~~L~ls~ 380 (635)
T 4g8a_A 317 TIERVKD-FSYNFGWQHLELVNCKFGQFPTLK---L--KSLKRLTFTSNKGGNAFS--EVDL--------PSLEFLDLSR 380 (635)
T ss_dssp EEEECGG-GGSCCCCSEEEEESCEESSCCCCB---C--TTCCEEEEESCCSCCBCC--CCBC--------TTCCEEECCS
T ss_pred ccccccc-cccchhhhhhhcccccccCcCccc---c--hhhhhcccccccCCCCcc--cccc--------cccccchhhc
Confidence 6655433 455677888888888776444332 2 677777877777654432 1222 3778888888
Q ss_pred CccCc--cccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEEEccCCcCCC
Q 047519 504 NNFNG--KISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVLILRSNRFWG 580 (892)
Q Consensus 504 n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~ 580 (892)
|.+.. ..+..+..+.+|+.+++..|.+. ..+..+..+++|+.++++.|......+ ..+..+++++.++++.|.+.+
T Consensus 381 n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred cccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 87753 34556667788999999988887 455677888999999998887666443 456788899999999999988
Q ss_pred CCCCCCCCcCCCCccEEEcCCCCCcCc-CCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhh
Q 047519 581 PIGDNTTIVPFPRFRIIDLSHNEFTGV-LPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERIL 659 (892)
Q Consensus 581 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 659 (892)
..+..+ ..++.|++|++++|++.+. +|.. +. .+
T Consensus 460 ~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~-~~-------------------------------------------~l 493 (635)
T 4g8a_A 460 AFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT-------------------------------------------EL 493 (635)
T ss_dssp CCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-------------------------------------------TC
T ss_pred cccccc--ccchhhhhhhhhhcccccccCchh-hh-------------------------------------------hc
Confidence 877766 7788999999999986543 3332 22 16
Q ss_pred hhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCC-CCCCEE
Q 047519 660 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVL 738 (892)
Q Consensus 660 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L 738 (892)
++|+.|||++|+|++.+|..|+++++|++|+ |++|+|++..|..|+++++|++|||++|+|++..|..|..+ ++|++|
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~-Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN-MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEE-CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 7899999999999999999999999999998 99999999999999999999999999999999999999988 689999
Q ss_pred ECCCCcCcccCC
Q 047519 739 NLSYNQFEGPIP 750 (892)
Q Consensus 739 ~ls~N~l~g~iP 750 (892)
++++|++++.+.
T Consensus 573 ~L~~Np~~C~C~ 584 (635)
T 4g8a_A 573 NLTQNDFACTCE 584 (635)
T ss_dssp ECTTCCBCCSGG
T ss_pred EeeCCCCcccCC
Confidence 999999997654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.5e-44 Score=418.73 Aligned_cols=485 Identities=16% Similarity=0.179 Sum_probs=322.7
Q ss_pred CCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCC
Q 047519 92 IRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLE 171 (892)
Q Consensus 92 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L 171 (892)
..+.|.+++.++. +|+.+. ++|++|+|++|.+++..|..++ ++++|
T Consensus 7 ~~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~------------------------------~l~~L 52 (549)
T 2z81_A 7 SGVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLR------------------------------ACANL 52 (549)
T ss_dssp TSEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTS------------------------------SCTTC
T ss_pred CceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhh------------------------------cCCcc
Confidence 3446778888876 787664 7899999999999877777777 45555
Q ss_pred CEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCC
Q 047519 172 EEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCG 250 (892)
Q Consensus 172 ~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~ 250 (892)
++|++++|.+.+..+.. ..+ ++|++|+|++| .+++..| .
T Consensus 53 ~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n--~l~~~~~----------------~-------------------- 92 (549)
T 2z81_A 53 QVLILKSSRINTIEGDAFYSL--GSLEHLDLSDN--HLSSLSS----------------S-------------------- 92 (549)
T ss_dssp CEEECTTSCCCEECTTTTTTC--TTCCEEECTTS--CCCSCCH----------------H--------------------
T ss_pred cEEECCCCCcCccChhhcccc--ccCCEEECCCC--ccCccCH----------------H--------------------
Confidence 55555555444443333 444 55555555555 5554444 3
Q ss_pred cCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-CCCccccCCCCCcEEecCccccccceeecc--c
Q 047519 251 KTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG-GPINWKSTLQSTVVLSTTEAEYMAITKAVK--E 327 (892)
Q Consensus 251 ~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p--~ 327 (892)
.++++++|++|++++|.+++ ..|..++++++|++|+++ +|.+.+.+| .
T Consensus 93 --------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~---~n~~~~~~~~~~ 143 (549)
T 2z81_A 93 --------------------------WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG---NVETFSEIRRID 143 (549)
T ss_dssp --------------------------HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE---ESSSCCEECTTT
T ss_pred --------------------------HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC---CCccccccCHhh
Confidence 34455555555555555554 244556666666666666 665444444 5
Q ss_pred hhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccc-
Q 047519 328 AIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL- 406 (892)
Q Consensus 328 l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~- 406 (892)
+ .++++|++|++++|.+++..|..+..+++|++|+++.|.+. .++...+..+++|++|++++|+ +.+..
T Consensus 144 ~-------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~--l~~~~~ 213 (549)
T 2z81_A 144 F-------AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTN--LARFQF 213 (549)
T ss_dssp T-------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCB--CTTCCC
T ss_pred h-------hcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCc--cccccc
Confidence 6 66777777777777777777777777777777777777765 4443444567777777777773 33321
Q ss_pred -cCC--CCCCCccEEEccCCCCC-----CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCC
Q 047519 407 -KVN--SSFPNLFGLGLSACNIS-----EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIE 478 (892)
Q Consensus 407 -~~~--~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 478 (892)
+.. ..+++|+.|++++|.++ .++..+..+++|+.+++++|.+.+. .
T Consensus 214 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~--------------------------~ 267 (549)
T 2z81_A 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL--------------------------G 267 (549)
T ss_dssp CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC--------------------------S
T ss_pred cccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc--------------------------c
Confidence 111 13455566666655554 1223344555666666666655432 1
Q ss_pred CCCCCCCCeeecCCCCcccEEECCCCccCcc-----ccccccCCCCCCEEEccCCCCCCCCCccc-cCCCCCcEEEccCC
Q 047519 479 YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-----ISQKFVNSCNLTNLNLNGNRLEGPLPLSL-VNCHHLEVLDVGNN 552 (892)
Q Consensus 479 ~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~N 552 (892)
....... -.+....+++.|++.++.+... ++..+...++|++|++++|.+. .+|..+ ..+++|++|++++|
T Consensus 268 ~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 268 DFNPSES--DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCCCCTT--TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccch--hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 1000000 0011112555555555544321 1222334578999999999998 677665 57999999999999
Q ss_pred CCCCCcch---hccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccc
Q 047519 553 QINDNFPN---WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEV 629 (892)
Q Consensus 553 ~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~ 629 (892)
++++.+|. .++.+++|++|++++|++++..+....+..+++|++|++++|+++ .+|..+ .
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~--------------- 407 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC-Q--------------- 407 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC-C---------------
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh-c---------------
Confidence 99987653 477899999999999999764321111377899999999999998 566432 1
Q ss_pred cccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCC
Q 047519 630 DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLT 709 (892)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~ 709 (892)
.+++|+.|++++|+++ .+|..+. ++|++|+ +++|+|++.+ .+++
T Consensus 408 ----------------------------~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~-Ls~N~l~~~~----~~l~ 451 (549)
T 2z81_A 408 ----------------------------WPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLD-VSNNNLDSFS----LFLP 451 (549)
T ss_dssp ----------------------------CCTTCCEEECTTSCCS-CCCTTSC--TTCSEEE-CCSSCCSCCC----CCCT
T ss_pred ----------------------------ccccccEEECCCCCcc-cccchhc--CCceEEE-CCCCChhhhc----ccCC
Confidence 1577999999999998 4555442 6899998 9999999753 5789
Q ss_pred CCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 047519 710 EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG-SQFNTFRNDSYVGNSGLCGFP 773 (892)
Q Consensus 710 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~ 773 (892)
+|++|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+....+.+|++.|++|
T Consensus 452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999999 7776 567999999999999999988763 356667788899999988765
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-43 Score=428.72 Aligned_cols=442 Identities=14% Similarity=0.133 Sum_probs=292.0
Q ss_pred CcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEc-ccCCCCCcCCccccCCC-Cc-----ceec
Q 047519 194 ESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEI-CRNRTCGKTMDVGLLFE-QD-----DTLG 266 (892)
Q Consensus 194 ~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L-~~n~~~~~~~~~l~~l~-~L-----~~L~ 266 (892)
.+++.|+|+++ .+.|.+| +.++++++|++|+| ++|.+.|..|....... .+ +.+.
T Consensus 323 ~~V~~L~Ls~~--~L~G~ip----------------~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr 384 (876)
T 4ecn_A 323 GRVTGLSLAGF--GAKGRVP----------------DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384 (876)
T ss_dssp SCEEEEECTTT--CCEEEEC----------------GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHH
T ss_pred CCEEEEECccC--CCCCcCc----------------hHHhccccceEeeecccccccccccccccccccccchhHHHHHH
Confidence 57999999999 8988888 89999999999999 88877766443211110 00 0000
Q ss_pred -------------ccceeecCh----------hhhcCCCCCcEEEccC--CCCCcCCCccccCCCCCcEEecCccccccc
Q 047519 267 -------------QSVNGYVDS----------DYIGDLDKRRSITGYV--FNFAGGPINWKSTLQSTVVLSTTEAEYMAI 321 (892)
Q Consensus 267 -------------~~~~~~~p~----------~~l~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l 321 (892)
..+.+.++. -.......++.+.+.. |.+++ +|..++++++|++|+++ +|.+
T Consensus 385 ~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls---~N~L 460 (876)
T 4ecn_A 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFA---NSPF 460 (876)
T ss_dssp THHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEE---SCCC
T ss_pred HhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECc---CCcC
Confidence 000000000 0001112222222222 44554 55555555666666665 5555
Q ss_pred ee-----------------ecc-chhhhhhccC--CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCc-CCC-cc
Q 047519 322 TK-----------------AVK-EAIWLQVFVR--GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNR-LSG-TT 379 (892)
Q Consensus 322 ~~-----------------~~p-~l~~l~l~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~ 379 (892)
++ .+| .+ + ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+
T Consensus 461 sg~~i~~~~~~~s~n~~~g~iP~~l-------~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~i 533 (876)
T 4ecn_A 461 TYDNIAVDWEDANSDYAKQYENEEL-------SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533 (876)
T ss_dssp CGGGBSSSCSCTTSHHHHHHTTSCC-------CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHH
T ss_pred CCCcccccccccccccccccCChhh-------hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccc
Confidence 55 355 44 4 67777777777777777777777777777777777776 665 55
Q ss_pred ChhhcC-------CCCCCCEEEcccCCCCCCccccC--CC-CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCC
Q 047519 380 ELYDFA-------KLKNLKWLFVSNNRLSLSTKLKV--NS-SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH 449 (892)
Q Consensus 380 ~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~--~~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 449 (892)
| ..+. .+++|++|++++| .+. .+|. .+ .+++|+.|++++|.++.+| .++.+++|+.|++++|.+.
T Consensus 534 P-~~i~~L~~~~~~l~~L~~L~Ls~N--~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 534 K-ADWTRLADDEDTGPKIQIFYMGYN--NLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp H-HHHHHHHHCTTTTTTCCEEECCSS--CCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS
T ss_pred h-HHHHhhhhcccccCCccEEEeeCC--cCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc
Confidence 5 3333 3347777777777 333 4554 33 6677777777777777776 6677777777777777777
Q ss_pred CCCchhhhhhCCCc-ccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccc---c--CCCCCCEE
Q 047519 450 GRISSWMWDLGITA-LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKF---V--NSCNLTNL 523 (892)
Q Consensus 450 ~~~~~~~~~l~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L 523 (892)
.+|..+..+ ++ |+.|++++|.++ .+|..+..+. .++|+.|++++|.+.+.+|... . .+++|+.|
T Consensus 609 -~lp~~l~~l--~~~L~~L~Ls~N~L~-~lp~~~~~~~------~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 609 -EIPEDFCAF--TDQVEGLGFSHNKLK-YIPNIFNAKS------VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp -CCCTTSCEE--CTTCCEEECCSSCCC-SCCSCCCTTC------SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred -cchHHHhhc--cccCCEEECcCCCCC-cCchhhhccc------cCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 666666666 66 777777777776 3343333322 1147777777777776555322 2 34578899
Q ss_pred EccCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCcchhccC--------CCCCCEEEccCCcCCCCCCCCCCCcCCCCc
Q 047519 524 NLNGNRLEGPLPLS-LVNCHHLEVLDVGNNQINDNFPNWLEI--------LPELQVLILRSNRFWGPIGDNTTIVPFPRF 594 (892)
Q Consensus 524 ~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 594 (892)
++++|.++ .+|.. +..+++|+.|+|++|+++. +|..+.. +++|+.|+|++|+++ .+|..+....+++|
T Consensus 679 ~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 679 TLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp ECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred EccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 99999988 45554 4578889999999998884 5554432 238999999999997 66765521378999
Q ss_pred cEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCC
Q 047519 595 RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG 674 (892)
Q Consensus 595 ~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 674 (892)
+.|+|++|++++ +|..+. + +++|+.|+|++|+
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~-~-------------------------------------------L~~L~~L~Ls~N~--- 787 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPL-N-------------------------------------------SSQLKAFGIRHQR--- 787 (876)
T ss_dssp CEEECCSSCCSS-CCCGGG-G-------------------------------------------CTTCCEEECCCCB---
T ss_pred CEEEeCCCCCCc-cchhhh-c-------------------------------------------CCCCCEEECCCCC---
Confidence 999999999987 675532 1 6778889998886
Q ss_pred CChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccC
Q 047519 675 GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 749 (892)
Q Consensus 675 ~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 749 (892)
+ +++|++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++|++...-
T Consensus 788 ---------------~-ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 788 ---------------D-AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp ---------------C-TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred ---------------C-cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 4 788888888888888888888888888888 68887765 58888888888886443
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=414.31 Aligned_cols=446 Identities=16% Similarity=0.160 Sum_probs=304.7
Q ss_pred CCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCC
Q 047519 169 DLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNR 247 (892)
Q Consensus 169 ~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~ 247 (892)
++|++|+|++|.+.+..+.. ..+ ++|++|+|++| .+++..| ..++++++|++|++++|.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n--~l~~~~~----------------~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSL--SKLRILIISHN--RIQYLDI----------------SVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTC--TTCCEEECCSS--CCCEEEG----------------GGGTTCTTCCEEECCSSC
T ss_pred ccccEEECCCCcccccChhhcccc--ccccEEecCCC--ccCCcCh----------------HHhhcccCCCEEecCCCc
Confidence 34445555555554444433 555 66666666666 6665555 566677777777777764
Q ss_pred CCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-CCCccccCCCCCcEEecCccccccceeecc
Q 047519 248 TCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG-GPINWKSTLQSTVVLSTTEAEYMAITKAVK 326 (892)
Q Consensus 248 ~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p 326 (892)
+. .+|. . .+++|++|++++|.+++ .+|..++++++|++|+++ +|.+.+.
T Consensus 81 l~----------------------~lp~-~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~---~n~l~~~-- 130 (520)
T 2z7x_B 81 LV----------------------KISC-H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS---TTHLEKS-- 130 (520)
T ss_dssp CC----------------------EEEC-C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEE---ESSCCGG--
T ss_pred ee----------------------ecCc-c--ccCCccEEeccCCccccccchhhhccCCcceEEEec---Ccccchh--
Confidence 43 2333 2 66777777777777776 466777777777777777 7766542
Q ss_pred chhhhhhccCCCCCc--CEEEccCCcC--CcCCCccccCCC-CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCC
Q 047519 327 EAIWLQVFVRGRRHY--AEPHFSSNQL--SGSIPSSVYELE-NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS 401 (892)
Q Consensus 327 ~l~~l~l~~~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 401 (892)
.+ ..+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++...+..+++|+.|++++| .
T Consensus 131 ~~-------~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n--~ 201 (520)
T 2z7x_B 131 SV-------LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV--L 201 (520)
T ss_dssp GG-------GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC--C
T ss_pred hc-------cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc--c
Confidence 23 444555 7777777777 666666665554 23345666666665555455566666666666666 2
Q ss_pred CCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhh-hhCCCcccEEEccCCCCCCCCCC
Q 047519 402 LSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMW-DLGITALYYLDLSNNFLTNIEYF 480 (892)
Q Consensus 402 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~ 480 (892)
...... .+......++.+++|+.|++++|.+.+..+..+. ....++|++|++++|++++..|.
T Consensus 202 ~~~~~~----------------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 265 (520)
T 2z7x_B 202 EDNKCS----------------YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265 (520)
T ss_dssp STTTTH----------------HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred cccccc----------------eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence 000000 0121112566777777777777776643322221 11115778888888877776666
Q ss_pred CC-----CCCCeeecCCCCcccEEECCCCccCcccc-ccccCC---CCCCEEEccCCCCCCCCCccccCCCCCcEEEccC
Q 047519 481 PP-----TNMTQLNFDSNLTHKVLDMRMNNFNGKIS-QKFVNS---CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGN 551 (892)
Q Consensus 481 ~~-----~~l~~L~l~~~~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 551 (892)
.+ ..++ .|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++
T Consensus 266 ~~~~~~~~~l~--------~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 266 RDFDYSGTSLK--------ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSN 333 (520)
T ss_dssp CCCCCCSCCCC--------EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred chhhcccccCc--------eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeEC
Confidence 55 4554 778888888877 344 333333 57889999998887432 126788899999999
Q ss_pred CCCCCCcchhccCCCCCCEEEccCCcCCC--CCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccc
Q 047519 552 NQINDNFPNWLEILPELQVLILRSNRFWG--PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEV 629 (892)
Q Consensus 552 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~ 629 (892)
|++++.+|.++..+++|++|++++|++++ .+|..+ ..+++|++|++++|++++.+|...+..
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~~-------------- 397 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT--TQMKSLQQLDISQNSVSYDEKKGDCSW-------------- 397 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH--TTCTTCCEEECCSSCCBCCGGGCSCCC--------------
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHH--hhCCCCCEEECCCCcCCcccccchhcc--------------
Confidence 99988888888889999999999998875 334444 678899999999999987666542211
Q ss_pred cccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCC
Q 047519 630 DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLT 709 (892)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~ 709 (892)
++.|+.|++++|++++.+|..+. ++|+.|+ +++|+++ .+|..+.+++
T Consensus 398 -----------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~-Ls~N~l~-~ip~~~~~l~ 444 (520)
T 2z7x_B 398 -----------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLD-LHSNKIK-SIPKQVVKLE 444 (520)
T ss_dssp -----------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEE-CCSSCCC-CCCGGGGGCT
T ss_pred -----------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEE-CCCCccc-ccchhhhcCC
Confidence 56788999999999888877665 7899998 9999999 8888888999
Q ss_pred CCCeeeCCCCcCCCCCccc-cCCCCCCCEEECCCCcCcccCCC
Q 047519 710 EVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 710 ~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 751 (892)
+|++|+|++|+++ .+|.. |..+++|++|++++|+++|.+|.
T Consensus 445 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9999999999999 56665 89999999999999999987763
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=404.05 Aligned_cols=453 Identities=16% Similarity=0.081 Sum_probs=299.7
Q ss_pred EEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceec
Q 047519 68 GLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNY 147 (892)
Q Consensus 68 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~ 147 (892)
.||+++++++ .+|. .+. ++|++|||++|.+.+. .|+.|+++++|++|+|++|.+.+..|..|+ ++++|++|+
T Consensus 4 ~l~ls~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~ 75 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLD 75 (520)
T ss_dssp EEECTTSCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEE
T ss_pred eEecCCCCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEe
Confidence 5899999998 5666 455 8999999999999885 557899999999999999999988888999 999999999
Q ss_pred CCcccCCcchhhhhhcccCCCCCCCEEecCCccCcc-ccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccc
Q 047519 148 LPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFK-VAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQ 225 (892)
Q Consensus 148 Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~ 225 (892)
|++|.+. .+|.. .+++|++|+|++|.+.+ ..|.. +.+ ++|++|++++| .+++
T Consensus 76 Ls~N~l~-~lp~~------~l~~L~~L~L~~N~l~~~~~p~~~~~l--~~L~~L~L~~n--~l~~--------------- 129 (520)
T 2z7x_B 76 LSHNKLV-KISCH------PTVNLKHLDLSFNAFDALPICKEFGNM--SQLKFLGLSTT--HLEK--------------- 129 (520)
T ss_dssp CCSSCCC-EEECC------CCCCCSEEECCSSCCSSCCCCGGGGGC--TTCCEEEEEES--SCCG---------------
T ss_pred cCCCcee-ecCcc------ccCCccEEeccCCccccccchhhhccC--CcceEEEecCc--ccch---------------
Confidence 9998744 56655 58899999999999887 45556 888 99999999998 7754
Q ss_pred cccccccccCCCC--CEEEcccCCC--CCcCCccccCCCCcceec-----ccceeecChhhhcCCCCCcEEEccCCC---
Q 047519 226 EFEMKDLGEAKKI--LGMEICRNRT--CGKTMDVGLLFEQDDTLG-----QSVNGYVDSDYIGDLDKRRSITGYVFN--- 293 (892)
Q Consensus 226 ~~p~~~l~~l~~L--~~L~L~~n~~--~~~~~~~l~~l~~L~~L~-----~~~~~~~p~~~l~~l~~L~~L~L~~n~--- 293 (892)
..+..+++| ++|++++|.+ .+..|..+..+.. +.++ +.+.+.++...+.++++|+.|++++|.
T Consensus 130 ----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 204 (520)
T 2z7x_B 130 ----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204 (520)
T ss_dssp ----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred ----hhccccccceeeEEEeeccccccccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence 234556666 9999999988 7777777666553 2222 444555554355566666666666665
Q ss_pred ----CCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccc-----cCCC
Q 047519 294 ----FAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSV-----YELE 363 (892)
Q Consensus 294 ----l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~ 363 (892)
+.+.+| .++.+++|+.|+++ +|.+.+..+ .+.. ....++|++|++++|.++|.+|..+ ..++
T Consensus 205 ~~~~~~~~~~-~l~~l~~L~~L~l~---~~~l~~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 205 KCSYFLSILA-KLQTNPKLSNLTLN---NIETTWNSFIRILQ----LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp TTHHHHHHHH-GGGGCTTCCEEEEE---EEEEEHHHHHHHHH----HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred ccceeecchh-hhccccchhhcccc---ccccCHHHHHHHHH----HhhhCcccEEEeecccccCccccchhhcccccCc
Confidence 444444 45666666666666 665554332 1100 0113466666666666666666665 5666
Q ss_pred CCCEEECcCCcCCCccChhhcCCC---CCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCC-CcchhhhCCCCcc
Q 047519 364 NLILLRLPSNRLSGTTELYDFAKL---KNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNIS-EFPDILRTLHQLQ 439 (892)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~ 439 (892)
+|+.+++++|.+ .+|...+..+ .+|+.|++++|.+ ... +....+++|++|++++|.++ .+|..++.+++|+
T Consensus 277 ~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l--~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 277 ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM--VHM-LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC--CCC-CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc--ccc-cchhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 666666666665 3332222222 4566666666622 111 10013455555555555555 2444455555555
Q ss_pred EEEccCCCCCC--CCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccc-cccC
Q 047519 440 WFNLSKNRIHG--RISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ-KFVN 516 (892)
Q Consensus 440 ~L~Ls~n~l~~--~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~-~~~~ 516 (892)
+|++++|++++ .+|..+..+ + +|++|++++|.+.+.+|. .+..
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l--~--------------------------------~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQM--K--------------------------------SLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTC--T--------------------------------TCCEEECCSSCCBCCGGGCSCCC
T ss_pred EEEccCCccCccccchHHHhhC--C--------------------------------CCCEEECCCCcCCcccccchhcc
Confidence 55555555543 223333333 4 555555555555553443 3566
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccE
Q 047519 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRI 596 (892)
Q Consensus 517 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 596 (892)
+++|++|++++|++++.+|..+. ++|++|++++|+++. +|..+..+++|++|++++|++++ +|.. .+..+++|++
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~ 472 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDG-IFDRLTSLQK 472 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCE
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCc-cCHH-HhccCCcccE
Confidence 77788888888888766665553 678888888888874 67777788888888888888874 4443 2377889999
Q ss_pred EEcCCCCCcCcCCcc
Q 047519 597 IDLSHNEFTGVLPTG 611 (892)
Q Consensus 597 L~Ls~N~l~~~~p~~ 611 (892)
|++++|++++..+..
T Consensus 473 L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 473 IWLHTNPWDCSCPRI 487 (520)
T ss_dssp EECCSSCBCCCHHHH
T ss_pred EECcCCCCcccCCch
Confidence 999999998766543
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.5e-41 Score=403.42 Aligned_cols=534 Identities=17% Similarity=0.091 Sum_probs=369.5
Q ss_pred CeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCC
Q 047519 93 RKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEE 172 (892)
Q Consensus 93 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~ 172 (892)
++.|=++.+++. +|..+. +++++||||+|.+++..|.+|. ++++|++|+|++|.+.+-.|..+. ++++
T Consensus 34 ~~~~c~~~~l~~--vP~~lp--~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~----~L~~-- 101 (635)
T 4g8a_A 34 ITYQCMELNFYK--IPDNLP--FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQ----SLSH-- 101 (635)
T ss_dssp TEEECTTSCCSS--CCSSSC--TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTT----TCTT--
T ss_pred CEEECCCCCcCc--cCCCCC--cCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhc----CCCC--
Confidence 344555556665 776653 5899999999999866666788 666666665555543322222333 4444
Q ss_pred EEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcC
Q 047519 173 EIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKT 252 (892)
Q Consensus 173 ~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~ 252 (892)
|++|+|++| .+++..+ ..|.++++|++|++++|.+.+..
T Consensus 102 -----------------------L~~L~Ls~N--~l~~l~~----------------~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 102 -----------------------LSTLILTGN--PIQSLAL----------------GAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp -----------------------CCEEECTTC--CCCEECG----------------GGGTTCTTCCEEECTTSCCCCST
T ss_pred -----------------------CCEEEccCC--cCCCCCH----------------HHhcCCCCCCEEECCCCcCCCCC
Confidence 444555555 4443333 34555555555555555443211
Q ss_pred CccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-CCCccccCCCCCcEEecCccccccceeecc-chhh
Q 047519 253 MDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG-GPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIW 330 (892)
Q Consensus 253 ~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~ 330 (892)
+ . .++++++|++|++++|.+.+ .+|..++.+++|++|+++ +|.+.+..| .+..
T Consensus 141 ~---------------------~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~---~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 141 N---------------------F-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS---SNKIQSIYCTDLRV 195 (635)
T ss_dssp T---------------------C-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC---SSCCCEECGGGGHH
T ss_pred h---------------------h-hhhcCcccCeeccccCccccCCCchhhccchhhhhhccc---Cccccccccccccc
Confidence 1 1 45556666666666666654 345666666677777777 666666555 3311
Q ss_pred hhhccCCC-CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccc---
Q 047519 331 LQVFVRGR-RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL--- 406 (892)
Q Consensus 331 l~l~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 406 (892)
+ .++ .....++++.|.++...+. ......++.+++.+|.....+....+..+..++...+..+........
T Consensus 196 L----~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 196 L----HQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp H----HTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred h----hhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 1 111 2234678888888755444 444556788999988776555556778888888887765522111111
Q ss_pred -cCCC-CCCCccEEEccCCCCC----CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCC
Q 047519 407 -KVNS-SFPNLFGLGLSACNIS----EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYF 480 (892)
Q Consensus 407 -~~~~-~l~~L~~L~L~~n~l~----~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 480 (892)
.... ....+....+..+... .++..+..+.+++.+++.++.+....+ +... ..++.|++.+|.+....+.
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~--~~L~~L~l~~~~~~~~~~~ 346 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN--FGWQHLELVNCKFGQFPTL 346 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSC--CCCSEEEEESCEESSCCCC
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccc--hhhhhhhcccccccCcCcc
Confidence 1111 3455555655554433 334556677889999999988764332 3334 7899999999988876654
Q ss_pred CCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCC--CCCCccccCCCCCcEEEccCCCCCCCc
Q 047519 481 PPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLE--GPLPLSLVNCHHLEVLDVGNNQINDNF 558 (892)
Q Consensus 481 ~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~ 558 (892)
.+. .|+.+++..|.+... .....+++|+.|++++|.+. +..+..+..+.+|+.+++..|.+.. .
T Consensus 347 ~l~-----------~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~ 412 (635)
T 4g8a_A 347 KLK-----------SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-M 412 (635)
T ss_dssp BCT-----------TCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-E
T ss_pred cch-----------hhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-c
Confidence 443 566777777776543 23457889999999999885 3455667788899999999998876 4
Q ss_pred chhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCC
Q 047519 559 PNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638 (892)
Q Consensus 559 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 638 (892)
+..+..+++|+.++++.|......+.. .+..+++++.++++.|.+.+..|..+ .
T Consensus 413 ~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~l~~l~~l~ls~n~l~~~~~~~~-~------------------------ 466 (635)
T 4g8a_A 413 SSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIF-N------------------------ 466 (635)
T ss_dssp CSCCTTCTTCCEEECTTSEEESTTSSC-TTTTCTTCCEEECTTSCCEECCTTTT-T------------------------
T ss_pred cccccccccccchhhhhcccccccccc-cccccccccccccccccccccccccc-c------------------------
Confidence 566778999999999988876655543 24788899999999999987666432 1
Q ss_pred CccceEEEEEccchhhHHHhhhhheeeecCCCcCC-CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCC
Q 047519 639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLS 717 (892)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls 717 (892)
.++.++.|++++|++. +.+|..+..+++|++|+ |++|+|++.+|..|+++++|++|+|+
T Consensus 467 -------------------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~-Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 467 -------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD-LSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp -------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE-CTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred -------------------cchhhhhhhhhhcccccccCchhhhhccccCEEE-CCCCccCCcChHHHcCCCCCCEEECC
Confidence 1677899999999854 46788899999999999 99999999999999999999999999
Q ss_pred CCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCCC-C-CcccCCccCCCCCCCCCC
Q 047519 718 SNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQ-F-NTFRNDSYVGNSGLCGFP 773 (892)
Q Consensus 718 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~-~-~~~~~~~~~gN~~lc~~~ 773 (892)
+|+|++..|..|..+++|++|++++|+|++.+|.... + .++....+.|||+.|+|.
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999999999999999887542 2 456777889999999864
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.8e-41 Score=396.15 Aligned_cols=494 Identities=16% Similarity=0.116 Sum_probs=342.7
Q ss_pred CCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCC
Q 047519 90 PHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDD 169 (892)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~ 169 (892)
...+++|+++|.+++ +|..+. ++|++|+|++|.+.+..|..++ ++
T Consensus 31 ~~~~~l~ls~~~L~~--ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~------------------------------~l- 75 (562)
T 3a79_B 31 ELESMVDYSNRNLTH--VPKDLP--PRTKALSLSQNSISELRMPDIS------------------------------FL- 75 (562)
T ss_dssp --CCEEECTTSCCCS--CCTTSC--TTCCEEECCSSCCCCCCGGGTT------------------------------TC-
T ss_pred CCCcEEEcCCCCCcc--CCCCCC--CCcCEEECCCCCccccChhhhc------------------------------cC-
Confidence 344778888888776 666554 7788888888877755555555 22
Q ss_pred CCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCC
Q 047519 170 LEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTC 249 (892)
Q Consensus 170 ~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~ 249 (892)
++|++|+|++| .+++..| ..+.++++|++|++++|.+.
T Consensus 76 ------------------------~~L~~L~Ls~N--~l~~~~~----------------~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 76 ------------------------SELRVLRLSHN--RIRSLDF----------------HVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp ------------------------TTCCEEECCSC--CCCEECT----------------TTTTTCTTCCEEECTTSCCC
T ss_pred ------------------------CCccEEECCCC--CCCcCCH----------------HHhCCCCCCCEEECCCCcCC
Confidence 45555556666 6666666 67888888999999888654
Q ss_pred CcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-CCCccccCCCCCcEEecCccccccceeecc-c
Q 047519 250 GKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG-GPINWKSTLQSTVVLSTTEAEYMAITKAVK-E 327 (892)
Q Consensus 250 ~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~ 327 (892)
.+|. . .+++|++|++++|.+++ .+|..++++++|++|+++ +|.+.+... .
T Consensus 114 ----------------------~lp~-~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~---~n~l~~~~~~~ 165 (562)
T 3a79_B 114 ----------------------NISC-C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS---AAKFRQLDLLP 165 (562)
T ss_dssp ----------------------EECS-C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE---CSBCCTTTTGG
T ss_pred ----------------------ccCc-c--ccccCCEEECCCCCccccCchHhhcccCcccEEecC---CCccccCchhh
Confidence 2444 3 67888999999998887 456788888888888888 887764211 3
Q ss_pred hhhhhhccCCCCCcCEEEccCCcC--CcCCCccccCCC--CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCC
Q 047519 328 AIWLQVFVRGRRHYAEPHFSSNQL--SGSIPSSVYELE--NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403 (892)
Q Consensus 328 l~~l~l~~~~l~~L~~L~Ls~n~l--~~~~p~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 403 (892)
+ ..+ +|++|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++...+..+++|+.|++++|.....
T Consensus 166 l-------~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 166 V-------AHL-HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp G-------TTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred h-------hhc-eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence 3 333 448888888887 777777776654 23 4566777776666655566666777777766621000
Q ss_pred ccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhh-hhhCCCcccEEEccCCCCCCCCCCCC
Q 047519 404 TKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWM-WDLGITALYYLDLSNNFLTNIEYFPP 482 (892)
Q Consensus 404 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~ 482 (892)
.+...+..+..+++|+.|+++++.+.+.....+ .....++|++|++++|.+++.+|..+
T Consensus 237 --------------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 296 (562)
T 3a79_B 237 --------------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296 (562)
T ss_dssp --------------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC
T ss_pred --------------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh
Confidence 011223456677777777777776654221111 11112578888888888887766554
Q ss_pred -----CCCCeeecCCCCcccEEECCCCccCcccc-cccc---CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCC
Q 047519 483 -----TNMTQLNFDSNLTHKVLDMRMNNFNGKIS-QKFV---NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQ 553 (892)
Q Consensus 483 -----~~l~~L~l~~~~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~ 553 (892)
.+++ .|+.+++..+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|+
T Consensus 297 ~~~~~~~L~--------~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 297 FTYSETALK--------SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp CCCCSCSCC--------EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred hhcccccch--------heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCc
Confidence 4444 556666666665 333 2222 2257999999999886332 12678899999999999
Q ss_pred CCCCcchhccCCCCCCEEEccCCcCCCCC--CCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccc
Q 047519 554 INDNFPNWLEILPELQVLILRSNRFWGPI--GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY 631 (892)
Q Consensus 554 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~ 631 (892)
+++.+|.++..+++|++|++++|++++.. |..+ ..+++|++|++++|++++.+|...+..
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~~---------------- 426 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT--KNMSSLETLDVSLNSLNSHAYDRTCAW---------------- 426 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT--TTCTTCCEEECTTSCCBSCCSSCCCCC----------------
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhh--cCCCCCCEEECCCCcCCCccChhhhcC----------------
Confidence 99988999999999999999999997633 3334 788999999999999998677553321
Q ss_pred cCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCC
Q 047519 632 MTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEV 711 (892)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L 711 (892)
++.|+.|++++|++++.+|..+. ++|+.|+ +++|+|+ .+|..+.++++|
T Consensus 427 ---------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~-L~~N~l~-~ip~~~~~l~~L 475 (562)
T 3a79_B 427 ---------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLD-LHNNRIM-SIPKDVTHLQAL 475 (562)
T ss_dssp ---------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEE-CCSSCCC-CCCTTTTSSCCC
T ss_pred ---------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEE-CCCCcCc-ccChhhcCCCCC
Confidence 56789999999999887777654 6899998 9999999 788878899999
Q ss_pred CeeeCCCCcCCCCCccc-cCCCCCCCEEECCCCcCcccCCCCCCCCcc---cCCccCCCCCCCCCCCCCCCCC
Q 047519 712 ESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPQGSQFNTF---RNDSYVGNSGLCGFPLLESCNI 780 (892)
Q Consensus 712 ~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~---~~~~~~gN~~lc~~~~~~~c~~ 780 (892)
+.|+|++|+++ .+|.. |..+++|+.|++++|+++|.+|....+..+ ....+ .+..-|++|....|..
T Consensus 476 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 476 QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVV-RNSAGSVAPDSAKCSG 546 (562)
T ss_dssp SEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTE-ECSSSSBCSSSSCBSS
T ss_pred CEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcc-cccccCCCCCCCccCC
Confidence 99999999999 56665 999999999999999999888743221211 11111 1223346666677865
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-40 Score=388.53 Aligned_cols=453 Identities=17% Similarity=0.093 Sum_probs=321.1
Q ss_pred EEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCcee
Q 047519 67 IGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTN 146 (892)
Q Consensus 67 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L 146 (892)
+.+|++++++++ +|. .+. ++|++|||++|.+.+. .|..|+++++|++|+|++|.+++..|..|+
T Consensus 34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------- 97 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFL---------- 97 (562)
T ss_dssp CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTT----------
T ss_pred cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhC----------
Confidence 678999999995 665 443 8999999999999985 567899999999999999999987787777
Q ss_pred cCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhccccc
Q 047519 147 YLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQE 226 (892)
Q Consensus 147 ~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~ 226 (892)
++++|++|+|++|.+.. +|
T Consensus 98 --------------------~l~~L~~L~Ls~N~l~~----------------------------lp------------- 116 (562)
T 3a79_B 98 --------------------FNQDLEYLDVSHNRLQN----------------------------IS------------- 116 (562)
T ss_dssp --------------------TCTTCCEEECTTSCCCE----------------------------EC-------------
T ss_pred --------------------CCCCCCEEECCCCcCCc----------------------------cC-------------
Confidence 55555555555554431 22
Q ss_pred ccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCC
Q 047519 227 FEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQ 306 (892)
Q Consensus 227 ~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 306 (892)
.. .+++|++|++++|.+.+. .+|. .++++++|++|++++|.+.+.. +..++
T Consensus 117 ---~~--~l~~L~~L~Ls~N~l~~l--------------------~~p~-~~~~l~~L~~L~L~~n~l~~~~---~~~l~ 167 (562)
T 3a79_B 117 ---CC--PMASLRHLDLSFNDFDVL--------------------PVCK-EFGNLTKLTFLGLSAAKFRQLD---LLPVA 167 (562)
T ss_dssp ---SC--CCTTCSEEECCSSCCSBC--------------------CCCG-GGGGCTTCCEEEEECSBCCTTT---TGGGT
T ss_pred ---cc--ccccCCEEECCCCCcccc--------------------CchH-hhcccCcccEEecCCCccccCc---hhhhh
Confidence 22 445555555555543321 1234 7888899999999999988643 44445
Q ss_pred CC--cEEecCccccccc--eeecc-chhhhhhccCCCC--CcCEEEccCCcCCcCCCc-cccCCCCCCEEECcCCcC---
Q 047519 307 ST--VVLSTTEAEYMAI--TKAVK-EAIWLQVFVRGRR--HYAEPHFSSNQLSGSIPS-SVYELENLILLRLPSNRL--- 375 (892)
Q Consensus 307 ~L--~~L~l~~~~~n~l--~~~~p-~l~~l~l~~~~l~--~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l--- 375 (892)
+| +.|+++ +|.+ .+..| .+ ..+. .+ .++++.|.+.+.++. .+..+++|+.|++++|..
T Consensus 168 ~L~L~~L~L~---~n~l~~~~~~~~~l-------~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 168 HLHLSCILLD---LVSYHIKGGETESL-------QIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp TSCEEEEEEE---ESSCCCCSSSCCEE-------EECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred hceeeEEEee---cccccccccCcccc-------cccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence 55 999999 9998 77777 55 4333 33 668899998876654 466889999999999852
Q ss_pred --CCccChhhcCCCCCCCEEEcccCCCCCCccc----cCCCCCCCccEEEccCCCCC-Ccchhh-----hCCCCccEEEc
Q 047519 376 --SGTTELYDFAKLKNLKWLFVSNNRLSLSTKL----KVNSSFPNLFGLGLSACNIS-EFPDIL-----RTLHQLQWFNL 443 (892)
Q Consensus 376 --~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~-~lp~~l-----~~l~~L~~L~L 443 (892)
.+.+ ..+..+++|+.|++.++ .+.+.. +.....++|++|++++|.++ .+|..+ ..++.|+.+++
T Consensus 237 ~l~~~~--~~l~~l~~L~~L~L~~~--~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 237 RLMTFL--SELTRGPTLLNVTLQHI--ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp HHHHHH--HHHHSCSSCEEEEEEEE--EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred hHHHHH--HHHhccCcceEEEecCC--cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 2222 35778889999998887 322211 00012235555555555555 455443 44444444444
Q ss_pred cCCCCCCCCc-hhhhhh-CCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCC
Q 047519 444 SKNRIHGRIS-SWMWDL-GITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT 521 (892)
Q Consensus 444 s~n~l~~~~~-~~~~~l-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 521 (892)
+.+.+ .+| .++... ... +++.|++++|.+.... ....+++|+
T Consensus 313 ~~~~~--~~p~~~~~~~~~~~--------------------------------~L~~L~l~~n~~~~~~--~~~~l~~L~ 356 (562)
T 3a79_B 313 KNQVF--LFSKEALYSVFAEM--------------------------------NIKMLSISDTPFIHMV--CPPSPSSFT 356 (562)
T ss_dssp EECCC--SSCHHHHHHHHHTC--------------------------------CCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred cccee--ecChhhhhhhhccC--------------------------------cceEEEccCCCccccc--CccCCCCce
Confidence 44444 222 111110 002 3555555555554221 114677888
Q ss_pred EEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCC--cchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEc
Q 047519 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDN--FPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL 599 (892)
Q Consensus 522 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 599 (892)
+|++++|++++.+|..+.++++|++|++++|++++. +|..+..+++|++|++++|++++.+|... +..+++|++|++
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~l~~L~~L~l 435 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWAESILVLNL 435 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCCCTTCCEEEC
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-hcCcccCCEEEC
Confidence 999999998888888888899999999999998873 35678889999999999999988666542 277899999999
Q ss_pred CCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhh
Q 047519 600 SHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV 679 (892)
Q Consensus 600 s~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~ 679 (892)
++|++++.+|..+ .+.|+.|+|++|+++ .+|..
T Consensus 436 ~~n~l~~~~~~~l----------------------------------------------~~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 436 SSNMLTGSVFRCL----------------------------------------------PPKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp CSSCCCGGGGSSC----------------------------------------------CTTCSEEECCSSCCC-CCCTT
T ss_pred CCCCCCcchhhhh----------------------------------------------cCcCCEEECCCCcCc-ccChh
Confidence 9999987666432 257899999999999 78888
Q ss_pred hcCccccccccccCCCCCCCCcchh-ccCCCCCCeeeCCCCcCCCCCc
Q 047519 680 VGKLNLLKGLNNISHNNLTGDIPSL-LRNLTEVESLDLSSNMLVGHIP 726 (892)
Q Consensus 680 ~~~l~~L~~L~~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip 726 (892)
+.++++|+.|+ |++|+|+ .+|.. |+.+++|+.|+|++|.+.+..|
T Consensus 469 ~~~l~~L~~L~-L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 469 VTHLQALQELN-VASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTSSCCCSEEE-CCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hcCCCCCCEEE-CCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 88999999998 9999999 56665 9999999999999999998765
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-39 Score=369.99 Aligned_cols=429 Identities=19% Similarity=0.215 Sum_probs=209.0
Q ss_pred CccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcc
Q 047519 85 SLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTT 164 (892)
Q Consensus 85 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~ 164 (892)
.-.+.++|++|++++|.+ +. +|+.|+++++|++|++++|.+.|.+|.+++ ++.+|+++++..+.
T Consensus 6 ~~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~l~l~~c~------------ 69 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNG--EQREMAVSRLRDCL------------ 69 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSC--CCHHHHHHHHHHHH------------
T ss_pred cccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccc--cchhcchhhhhhhh------------
Confidence 344568899999999999 44 899999999999999999999999999998 88888777775533
Q ss_pred cCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcc
Q 047519 165 FLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEIC 244 (892)
Q Consensus 165 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~ 244 (892)
..++++|++++|.+.+... .. ++|++|++++| .+++ +| .. +++|++|+++
T Consensus 70 ---~~~l~~L~l~~~~l~~lp~---~~--~~L~~L~l~~n--~l~~-lp----------------~~---~~~L~~L~l~ 119 (454)
T 1jl5_A 70 ---DRQAHELELNNLGLSSLPE---LP--PHLESLVASCN--SLTE-LP----------------EL---PQSLKSLLVD 119 (454)
T ss_dssp ---HHTCSEEECTTSCCSCCCS---CC--TTCSEEECCSS--CCSS-CC----------------CC---CTTCCEEECC
T ss_pred ---ccCCCEEEecCCccccCCC---Cc--CCCCEEEccCC--cCCc-cc----------------cc---cCCCcEEECC
Confidence 1345666666665544211 12 45566666665 5544 33 21 2455555555
Q ss_pred cCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceee
Q 047519 245 RNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKA 324 (892)
Q Consensus 245 ~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~ 324 (892)
+|.+.+ +|. + .++|++|++++|.+++ +|
T Consensus 120 ~n~l~~----------------------l~~--~--~~~L~~L~L~~n~l~~-lp------------------------- 147 (454)
T 1jl5_A 120 NNNLKA----------------------LSD--L--PPLLEYLGVSNNQLEK-LP------------------------- 147 (454)
T ss_dssp SSCCSC----------------------CCS--C--CTTCCEEECCSSCCSS-CC-------------------------
T ss_pred CCccCc----------------------ccC--C--CCCCCEEECcCCCCCC-Cc-------------------------
Confidence 553331 000 0 0345555555555443 33
Q ss_pred ccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCc
Q 047519 325 VKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404 (892)
Q Consensus 325 ~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 404 (892)
.+ +++++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .+.++++|++|++++|+ +.+
T Consensus 148 --~~-------~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~--l~~ 209 (454)
T 1jl5_A 148 --EL-------QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNS--LKK 209 (454)
T ss_dssp --CC-------TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSC--CSS
T ss_pred --cc-------CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCc--CCc
Confidence 44 444555555555555543 33322 355566666665553 33 35555666666666652 222
Q ss_pred cccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCC
Q 047519 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTN 484 (892)
Q Consensus 405 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 484 (892)
++. ..++|++|++++|.++.+|. ++.+++|++|++++|++++ +|.. . ++|+.|++++|++++... .+
T Consensus 210 -l~~--~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~--~~L~~L~l~~N~l~~l~~-~~-- 276 (454)
T 1jl5_A 210 -LPD--LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---P--PSLEALNVRDNYLTDLPE-LP-- 276 (454)
T ss_dssp -CCC--CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---C--TTCCEEECCSSCCSCCCC-CC--
T ss_pred -CCC--CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---c--cccCEEECCCCcccccCc-cc--
Confidence 111 12466666666666666663 6677777777777777764 3332 2 667777777777776322 11
Q ss_pred CCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCC-CCCcEEEccCCCCCCCcchhcc
Q 047519 485 MTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC-HHLEVLDVGNNQINDNFPNWLE 563 (892)
Q Consensus 485 l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~ 563 (892)
++|+.|++++|.+++. |.. .++|++|++++|++++ ++ .+ ++|++|++++|++++ +|..
T Consensus 277 ---------~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~-- 335 (454)
T 1jl5_A 277 ---------QSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL-- 335 (454)
T ss_dssp ---------TTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--
T ss_pred ---------CcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--
Confidence 2667777777777752 211 2578888888888874 22 22 578888898888887 5543
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcC--cCCcchhhhhhhhhcccCCCccccccCCCCCCCcc
Q 047519 564 ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG--VLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYY 641 (892)
Q Consensus 564 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 641 (892)
+++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+
T Consensus 336 -~~~L~~L~L~~N~l~~-lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l----------------------------- 379 (454)
T 1jl5_A 336 -PPRLERLIASFNHLAE-VPE-----LPQNLKQLHVEYNPLREFPDIPESV----------------------------- 379 (454)
T ss_dssp -CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSSCCCCCTTC-----------------------------
T ss_pred -CCcCCEEECCCCcccc-ccc-----hhhhccEEECCCCCCCcCCCChHHH-----------------------------
Confidence 5788999999998874 554 25789999999999987 555431
Q ss_pred ceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCC--CcchhccCCCCCCeeeCCCC
Q 047519 642 ESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTG--DIPSLLRNLTEVESLDLSSN 719 (892)
Q Consensus 642 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N 719 (892)
. +++.|++.|.+|.. +++|+.|+ +++|++++ .+|. +++.|.+.+|
T Consensus 380 ---------------------~--~L~~n~~~~~i~~~---~~~L~~L~-ls~N~l~~~~~iP~------sl~~L~~~~~ 426 (454)
T 1jl5_A 380 ---------------------E--DLRMNSHLAEVPEL---PQNLKQLH-VETNPLREFPDIPE------SVEDLRMNSE 426 (454)
T ss_dssp ---------------------C--EEECCC--------------------------------------------------
T ss_pred ---------------------H--hhhhcccccccccc---cCcCCEEE-CCCCcCCccccchh------hHhheeCcCc
Confidence 1 22345666667663 46778887 88888886 5664 3566778888
Q ss_pred cCCCCCccccCCC
Q 047519 720 MLVGHIPTQLTSL 732 (892)
Q Consensus 720 ~l~~~ip~~l~~l 732 (892)
.+.+.+|.+....
T Consensus 427 ~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 427 RVVDPYEFAHETT 439 (454)
T ss_dssp -------------
T ss_pred ccCCccccCHHHh
Confidence 8887776655443
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-39 Score=367.47 Aligned_cols=341 Identities=18% Similarity=0.163 Sum_probs=186.4
Q ss_pred CCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCC
Q 047519 113 QLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQ 192 (892)
Q Consensus 113 ~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~ 192 (892)
+.++|++|++++|.+ |.+|++++ ++++|++|+++++...+.+|..++ ++++|+.+++..|..
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~--~L~~L~~L~l~~n~~~~~~p~~~~----~l~~L~~l~l~~c~~----------- 70 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAE--NVKSKTEYYNAWSEWERNAPPGNG----EQREMAVSRLRDCLD----------- 70 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSC----CCHHHHHHHHHHHHH-----------
T ss_pred ccccchhhhcccCch-hhCChhHh--cccchhhhhccCCcccccCCcccc----cchhcchhhhhhhhc-----------
Confidence 468999999999999 89999999 888888888888776777777777 676666666655542
Q ss_pred CCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceee
Q 047519 193 EESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGY 272 (892)
Q Consensus 193 ~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~ 272 (892)
.++++|++++| .+++ +| .
T Consensus 71 -~~l~~L~l~~~--~l~~-lp----------------~------------------------------------------ 88 (454)
T 1jl5_A 71 -RQAHELELNNL--GLSS-LP----------------E------------------------------------------ 88 (454)
T ss_dssp -HTCSEEECTTS--CCSC-CC----------------S------------------------------------------
T ss_pred -cCCCEEEecCC--cccc-CC----------------C------------------------------------------
Confidence 45566666666 4433 12 0
Q ss_pred cChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCC
Q 047519 273 VDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLS 352 (892)
Q Consensus 273 ~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~ 352 (892)
-.++|++|++++|.+++ +|.. +++|++|+++ +|.+.+ +|.+ .++|++|++++|.++
T Consensus 89 -------~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~---~n~l~~-l~~~---------~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 89 -------LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVD---NNNLKA-LSDL---------PPLLEYLGVSNNQLE 144 (454)
T ss_dssp -------CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECC---SSCCSC-CCSC---------CTTCCEEECCSSCCS
T ss_pred -------CcCCCCEEEccCCcCCc-cccc---cCCCcEEECC---CCccCc-ccCC---------CCCCCEEECcCCCCC
Confidence 01345555555555554 4432 2566666666 665543 2211 257778888888887
Q ss_pred cCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhh
Q 047519 353 GSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDIL 432 (892)
Q Consensus 353 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l 432 (892)
+ +| +++++++|++|++++|++++ +| . ..++|++|++++| .+.+ ++....+++|++|++++|.++.+|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp-~---~~~~L~~L~L~~n--~l~~-l~~~~~l~~L~~L~l~~N~l~~l~~~- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LP-D---LPPSLEFIAAGNN--QLEE-LPELQNLPFLTAIYADNNSLKKLPDL- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CC-C---CCTTCCEEECCSS--CCSS-CCCCTTCTTCCEEECCSSCCSSCCCC-
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cC-C---CcccccEEECcCC--cCCc-CccccCCCCCCEEECCCCcCCcCCCC-
Confidence 5 66 58888888888888888874 44 2 2357888888888 4333 34333677777777777777766643
Q ss_pred hCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccc
Q 047519 433 RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ 512 (892)
Q Consensus 433 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~ 512 (892)
.++|++|++++|.+. .+|. +..+ ++|++|++++|++++... .+ ++|+.|++++|.+++ +|.
T Consensus 214 --~~~L~~L~l~~n~l~-~lp~-~~~l--~~L~~L~l~~N~l~~l~~-~~-----------~~L~~L~l~~N~l~~-l~~ 274 (454)
T 1jl5_A 214 --PLSLESIVAGNNILE-ELPE-LQNL--PFLTTIYADNNLLKTLPD-LP-----------PSLEALNVRDNYLTD-LPE 274 (454)
T ss_dssp --CTTCCEEECCSSCCS-SCCC-CTTC--TTCCEEECCSSCCSSCCS-CC-----------TTCCEEECCSSCCSC-CCC
T ss_pred --cCcccEEECcCCcCC-cccc-cCCC--CCCCEEECCCCcCCcccc-cc-----------cccCEEECCCCcccc-cCc
Confidence 246777777777776 4553 5555 677777777777665322 11 155666666666654 332
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCC-CCCCEEEccCCcCCCCCCCCCCCcCC
Q 047519 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEIL-PELQVLILRSNRFWGPIGDNTTIVPF 591 (892)
Q Consensus 513 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l 591 (892)
. +++|++|++++|++++ +|.. .++|++|++++|++++ ++ .+ ++|++|++++|++++ +|.. +
T Consensus 275 ~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~-----~ 336 (454)
T 1jl5_A 275 L---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL-----P 336 (454)
T ss_dssp C---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC-----C
T ss_pred c---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc-----C
Confidence 2 2456666666666553 1111 1455666666665554 11 12 355555555555544 3321 3
Q ss_pred CCccEEEcCCCCCc
Q 047519 592 PRFRIIDLSHNEFT 605 (892)
Q Consensus 592 ~~L~~L~Ls~N~l~ 605 (892)
++|++|++++|+++
T Consensus 337 ~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 337 PRLERLIASFNHLA 350 (454)
T ss_dssp TTCCEEECCSSCCS
T ss_pred CcCCEEECCCCccc
Confidence 45555555555555
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.8e-40 Score=354.90 Aligned_cols=293 Identities=23% Similarity=0.328 Sum_probs=225.5
Q ss_pred CCCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCCCCcc--ccceEecCCC--CeEEEEECCCCCCCC-
Q 047519 4 KLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCS--WDGVTCDTVA--GHVIGLDLSCSWLHG- 78 (892)
Q Consensus 4 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~g- 78 (892)
..|.++|++||++||+++.++ ..+++|..+.+||. |+||+|+..+ ++|+.|+|+++.+.|
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~---------------~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~ 65 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNP---------------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCC---------------GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred CCCCHHHHHHHHHHHHhcCCc---------------ccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC
Confidence 369999999999999999654 26899988889999 9999998765 899999999999998
Q ss_pred -CCCCCCCccCCCCCCeEecCC-CCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcc
Q 047519 79 -NIPSNSSLFFLPHIRKLNLAF-NDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDC 156 (892)
Q Consensus 79 -~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~ 156 (892)
.++. ++..+++|++|+|++ |.+.+. +|+.|+++++|++|+|++|.+.+.+|..++ ++++|++|+++++.+.+.
T Consensus 66 ~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~ 140 (313)
T 1ogq_A 66 YPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGT 140 (313)
T ss_dssp EECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESC
T ss_pred cccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCc
Confidence 7877 899999999999995 888876 888899999999999999999888888887 555555555554443444
Q ss_pred hhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCC
Q 047519 157 FQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAK 236 (892)
Q Consensus 157 ~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~ 236 (892)
+|..+ ..+ ++|++|++++| .+++.+| ..++.++
T Consensus 141 ~p~~~---------------------------~~l--~~L~~L~L~~N--~l~~~~p----------------~~l~~l~ 173 (313)
T 1ogq_A 141 LPPSI---------------------------SSL--PNLVGITFDGN--RISGAIP----------------DSYGSFS 173 (313)
T ss_dssp CCGGG---------------------------GGC--TTCCEEECCSS--CCEEECC----------------GGGGCCC
T ss_pred CChHH---------------------------hcC--CCCCeEECcCC--cccCcCC----------------HHHhhhh
Confidence 44444 344 55555556666 5555555 5556665
Q ss_pred -CCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCc
Q 047519 237 -KILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTE 315 (892)
Q Consensus 237 -~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 315 (892)
+|++|++++| .+.+.+|. .+..++ |++|++++|.+++..|..+..+++|+.|+++
T Consensus 174 ~~L~~L~L~~N---------------------~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~- 229 (313)
T 1ogq_A 174 KLFTSMTISRN---------------------RLTGKIPP-TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA- 229 (313)
T ss_dssp TTCCEEECCSS---------------------EEEEECCG-GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC-
T ss_pred hcCcEEECcCC---------------------eeeccCCh-HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC-
Confidence 6666666665 33444455 666665 7888888888877777778888888888888
Q ss_pred cccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEc
Q 047519 316 AEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFV 395 (892)
Q Consensus 316 ~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 395 (892)
+|.+++.+|.+ ..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+| .. ..+++|+.|++
T Consensus 230 --~N~l~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 230 --KNSLAFDLGKV-------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QG-GNLQRFDVSAY 298 (313)
T ss_dssp --SSEECCBGGGC-------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CS-TTGGGSCGGGT
T ss_pred --CCceeeecCcc-------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC-CC-ccccccChHHh
Confidence 88887777766 777888888888888888888888888888888888888887777 33 67778888888
Q ss_pred ccC
Q 047519 396 SNN 398 (892)
Q Consensus 396 s~n 398 (892)
++|
T Consensus 299 ~~N 301 (313)
T 1ogq_A 299 ANN 301 (313)
T ss_dssp CSS
T ss_pred cCC
Confidence 887
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.3e-38 Score=358.70 Aligned_cols=392 Identities=16% Similarity=0.154 Sum_probs=271.5
Q ss_pred EEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCC-CccccCCC
Q 047519 286 SITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSI-PSSVYELE 363 (892)
Q Consensus 286 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~ 363 (892)
.++.+++.++ .+|. + .++|++|+++ +|.+.+..| .+ .++++|++|++++|.+.+.+ +..|.+++
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls---~n~i~~~~~~~~-------~~l~~L~~L~L~~n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLS---LNSIAELNETSF-------SRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECC---SSCCCEECTTTT-------SSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEec---CCccCcCChhHh-------ccCccccEEECcCCcccceECcccccccc
Confidence 3445555444 3343 2 1456666666 666665555 56 66666666666666665433 44566666
Q ss_pred CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCC--C-CCCCccEEEccCCCCCCc-chh-hhCCCCc
Q 047519 364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVN--S-SFPNLFGLGLSACNISEF-PDI-LRTLHQL 438 (892)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~-~l~~L~~L~L~~n~l~~l-p~~-l~~l~~L 438 (892)
+|++|++++|.+++..| ..|.++++|++|++++| .+.+..+.. + .+++|++|++++|.++.+ |.. +..+++|
T Consensus 80 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 80 SLIILKLDYNQFLQLET-GAFNGLANLEVLTLTQC--NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCCEEECTTCTTCEECT-TTTTTCTTCCEEECTTS--CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred cCCEEeCCCCccCccCh-hhccCcccCCEEeCCCC--CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 66666666666665444 56666666666666666 333322221 2 566677777777777644 443 7788888
Q ss_pred cEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCC-
Q 047519 439 QWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS- 517 (892)
Q Consensus 439 ~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l- 517 (892)
++|++++|.+.+..+..+..+...+|+.|++++|.+.+..+..+.....-.+..+++|++|++++|.+++..|..+...
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 8888888888877777776654467888888888887765543221000001122367777787777777766655443
Q ss_pred --CCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc--CCCCCCEEEccCCcCCCCCCCCCCCcCCCC
Q 047519 518 --CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE--ILPELQVLILRSNRFWGPIGDNTTIVPFPR 593 (892)
Q Consensus 518 --~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 593 (892)
++|+.|++++|.+.+... ..+.+.+..+..+. ..++|++|++++|.+.+..|..+ ..+++
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~ 300 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTD 300 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--TTCTT
T ss_pred cccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhc--ccCCC
Confidence 677777777776653211 12222222222333 24688999999999888877776 78889
Q ss_pred ccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCC
Q 047519 594 FRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ 673 (892)
Q Consensus 594 L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 673 (892)
|++|++++|++++..|..+ .+ ++.|+.|+|++|+++
T Consensus 301 L~~L~Ls~n~l~~~~~~~~-~~-------------------------------------------l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAF-WG-------------------------------------------LTHLLKLNLSQNFLG 336 (455)
T ss_dssp CCEEECTTSCCCEECTTTT-TT-------------------------------------------CTTCCEEECCSSCCC
T ss_pred CCEEECCCCcccccChhHh-cC-------------------------------------------cccCCEEECCCCccC
Confidence 9999999999987666442 11 577899999999999
Q ss_pred CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCC
Q 047519 674 GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753 (892)
Q Consensus 674 ~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 753 (892)
+..|..++++++|++|+ |++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|+++|.+|...
T Consensus 337 ~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLD-LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp EECGGGGTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CcChhHhcCcccCCEEE-CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 88899999999999998 99999998889999999999999999999998777788999999999999999999999654
Q ss_pred CC
Q 047519 754 QF 755 (892)
Q Consensus 754 ~~ 755 (892)
.+
T Consensus 416 ~l 417 (455)
T 3v47_A 416 YL 417 (455)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-36 Score=345.09 Aligned_cols=357 Identities=18% Similarity=0.123 Sum_probs=276.1
Q ss_pred CcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeec
Q 047519 194 ESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYV 273 (892)
Q Consensus 194 ~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~ 273 (892)
++|++|+|++| .+++..| ..++++++|++|++++|.+.+ .+
T Consensus 30 ~~l~~L~Ls~n--~i~~~~~----------------~~~~~l~~L~~L~L~~n~~~~---------------------~i 70 (455)
T 3v47_A 30 AHVNYVDLSLN--SIAELNE----------------TSFSRLQDLQFLKVEQQTPGL---------------------VI 70 (455)
T ss_dssp TTCCEEECCSS--CCCEECT----------------TTTSSCTTCCEEECCCCSTTC---------------------EE
T ss_pred CccCEEEecCC--ccCcCCh----------------hHhccCccccEEECcCCcccc---------------------eE
Confidence 55666666666 6655555 566666677777776664432 33
Q ss_pred ChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc---chhhhhhccCCCCCcCEEEccCCc
Q 047519 274 DSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK---EAIWLQVFVRGRRHYAEPHFSSNQ 350 (892)
Q Consensus 274 p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p---~l~~l~l~~~~l~~L~~L~Ls~n~ 350 (892)
+...+.++++|++|++++|.+++..|..++++++|++|+++ +|.+.+.+| .+ ..+++|++|++++|.
T Consensus 71 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~---~n~l~~~~~~~~~~-------~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 71 RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT---QCNLDGAVLSGNFF-------KPLTSLEMLVLRDNN 140 (455)
T ss_dssp CTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT---TSCCBTHHHHSSTT-------TTCTTCCEEECCSSB
T ss_pred CcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC---CCCCCccccCcccc-------cCcccCCEEECCCCc
Confidence 22256777888888888888877777778888888888888 888776555 37 778888888888888
Q ss_pred CCcCCCcc-ccCCCCCCEEECcCCcCCCccChhhcCCC--CCCCEEEcccCCCCCCccccC-------CCCCCCccEEEc
Q 047519 351 LSGSIPSS-VYELENLILLRLPSNRLSGTTELYDFAKL--KNLKWLFVSNNRLSLSTKLKV-------NSSFPNLFGLGL 420 (892)
Q Consensus 351 l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~-------~~~l~~L~~L~L 420 (892)
+++..|.. +.++++|++|++++|.+++..+ ..+..+ .+|+.|++++|.+........ ...+++|++|++
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEec
Confidence 88776765 7788888888888888876655 555554 678888888884332221111 124578999999
Q ss_pred cCCCCC-CcchhhhCC---CCccEEEccCCCCCCC----------CchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCC
Q 047519 421 SACNIS-EFPDILRTL---HQLQWFNLSKNRIHGR----------ISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMT 486 (892)
Q Consensus 421 ~~n~l~-~lp~~l~~l---~~L~~L~Ls~n~l~~~----------~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 486 (892)
++|.++ .+|..+... ++|+.|++++|.+.+. .+..+..+..++|+.|++++|.+++..|..+..++
T Consensus 220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 299 (455)
T 3v47_A 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299 (455)
T ss_dssp TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence 999888 566555443 7899999998865432 22333333347899999999999999888877776
Q ss_pred eeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCC
Q 047519 487 QLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILP 566 (892)
Q Consensus 487 ~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 566 (892)
+|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|++|+|++|++++..|.+|..++
T Consensus 300 --------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 300 --------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp --------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred --------CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 899999999999998899999999999999999999988889999999999999999999998899999999
Q ss_pred CCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCc
Q 047519 567 ELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPT 610 (892)
Q Consensus 567 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 610 (892)
+|++|++++|++++..+..+ ..+++|++|++++|++++.+|.
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTT
T ss_pred cccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCCc
Confidence 99999999999988666655 7899999999999999999883
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-35 Score=335.46 Aligned_cols=356 Identities=17% Similarity=0.129 Sum_probs=257.9
Q ss_pred hhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCC
Q 047519 277 YIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIP 356 (892)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p 356 (892)
.++++++|++|++++|.+++. | .++.+++|++|+++ +|.+++. | + +.+++|++|++++|.+++. |
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls---~n~l~~~-~-~-------~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICT---SNNITTL-D-L-------SQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECC---SSCCSCC-C-C-------TTCTTCSEEECCSSCCSCC-C
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEcc---CCcCCeE-c-c-------ccCCCCCEEECcCCCCcee-e
Confidence 567788888888888888764 4 57788888888888 8877653 3 5 7778888888888888754 3
Q ss_pred ccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCC-CCCcchhhhCC
Q 047519 357 SSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACN-ISEFPDILRTL 435 (892)
Q Consensus 357 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l 435 (892)
++++++|++|++++|++++ ++ +..+++|++|++++| .+.+. + ...+++|++|++++|. +..+ .+..+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N--~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARN--TLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTS--CCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred --cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCC--cccee-c-cccCCcCCEEECCCCCccccc--ccccC
Confidence 7778888888888888775 33 677788888888888 33332 2 2267777777777773 3355 25667
Q ss_pred CCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccccc
Q 047519 436 HQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV 515 (892)
Q Consensus 436 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~ 515 (892)
++|++|++++|++++ +| +..+ ++|+.|++++|++++.. +.. +++|+.|++++|++++ +| +.
T Consensus 170 ~~L~~L~ls~n~l~~-l~--l~~l--~~L~~L~l~~N~l~~~~---l~~--------l~~L~~L~Ls~N~l~~-ip--~~ 230 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD--VSQN--KLLNRLNCDTNNITKLD---LNQ--------NIQLTFLDCSSNKLTE-ID--VT 230 (457)
T ss_dssp TTCCEEECCSSCCCC-CC--CTTC--TTCCEEECCSSCCSCCC---CTT--------CTTCSEEECCSSCCSC-CC--CT
T ss_pred CcCCEEECCCCccce-ec--cccC--CCCCEEECcCCcCCeec---ccc--------CCCCCEEECcCCcccc-cC--cc
Confidence 777777777777775 33 4444 77777777777776641 222 2367777777777776 34 66
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCcc
Q 047519 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR 595 (892)
Q Consensus 516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 595 (892)
.+++|++|++++|++++.. +..+++|+.|++++| +|+.|++++|.+.+.+|. ..+++|+
T Consensus 231 ~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----~~l~~L~ 289 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA----EGCRKIK 289 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----TTCTTCC
T ss_pred ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc----cccccCC
Confidence 6777777777777777542 345666777776654 456677888887777763 5688999
Q ss_pred EEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCC
Q 047519 596 IIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGG 675 (892)
Q Consensus 596 ~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 675 (892)
.|++++|.+.+.+|.. ...+..++++. .+.|+.|++++|++++.
T Consensus 290 ~L~Ls~n~~l~~l~~~----~~~L~~L~l~~--------------------------------~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQ----AAGITELDLSQ--------------------------------NPKLVYLYLNNTELTEL 333 (457)
T ss_dssp CCCCTTCTTCCEEECT----TCCCSCCCCTT--------------------------------CTTCCEEECTTCCCSCC
T ss_pred EEECCCCcccceeccC----CCcceEechhh--------------------------------cccCCEEECCCCccccc
Confidence 9999999988888743 23333333322 46799999999999974
Q ss_pred ChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC
Q 047519 676 IPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752 (892)
Q Consensus 676 ~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 752 (892)
+ ++++++|+.|+ +++|+|++ ++.|+.|++++|.++|. ..+..|..+++++|+++|.||..
T Consensus 334 -~--l~~l~~L~~L~-l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 334 -D--VSHNTKLKSLS-CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -C--CTTCTTCSEEE-CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred -c--cccCCcCcEEE-CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 3 89999999998 99999996 35677889999999976 34567888999999999999974
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.3e-34 Score=327.45 Aligned_cols=316 Identities=19% Similarity=0.179 Sum_probs=205.6
Q ss_pred hcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCc
Q 047519 278 IGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPS 357 (892)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~ 357 (892)
++.+++|++|++++|.+++. | ++++++|++|+++ +|.+++ +| + +.+++|++|++++|.+++. +
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~---~N~l~~-l~-~-------~~l~~L~~L~l~~N~l~~l-~- 143 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD---TNKLTK-LD-V-------SQNPLLTYLNCARNTLTEI-D- 143 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC---SSCCSC-CC-C-------TTCTTCCEEECTTSCCSCC-C-
T ss_pred cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC---CCcCCe-ec-C-------CCCCcCCEEECCCCcccee-c-
Confidence 44566677777777776653 2 6667777777777 776655 33 5 6677777777777777753 2
Q ss_pred cccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCC
Q 047519 358 SVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQ 437 (892)
Q Consensus 358 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 437 (892)
++.+++|++|++++|...+.++ +..+++|++|++++| .+.+ ++ ...+++|+.|++++|+++.++ ++.+++
T Consensus 144 -l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n--~l~~-l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~ 213 (457)
T 3bz5_A 144 -VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN--KITE-LD-VSQNKLLNRLNCDTNNITKLD--LNQNIQ 213 (457)
T ss_dssp -CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS--CCCC-CC-CTTCTTCCEEECCSSCCSCCC--CTTCTT
T ss_pred -cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC--ccce-ec-cccCCCCCEEECcCCcCCeec--cccCCC
Confidence 6677777777777775444443 566777777777777 3333 22 236777777777777777663 677788
Q ss_pred ccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCC
Q 047519 438 LQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS 517 (892)
Q Consensus 438 L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l 517 (892)
|++|++++|++++ +| +..+ ++|+.|++++|++++.++..+++++ .|+++.|
T Consensus 214 L~~L~Ls~N~l~~-ip--~~~l--~~L~~L~l~~N~l~~~~~~~l~~L~-----------~L~l~~n------------- 264 (457)
T 3bz5_A 214 LTFLDCSSNKLTE-ID--VTPL--TQLTYFDCSVNPLTELDVSTLSKLT-----------TLHCIQT------------- 264 (457)
T ss_dssp CSEEECCSSCCSC-CC--CTTC--TTCSEEECCSSCCSCCCCTTCTTCC-----------EEECTTC-------------
T ss_pred CCEEECcCCcccc-cC--cccc--CCCCEEEeeCCcCCCcCHHHCCCCC-----------EEeccCC-------------
Confidence 8888888888876 44 5555 7788888888888776555554444 3443332
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEE
Q 047519 518 CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRII 597 (892)
Q Consensus 518 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 597 (892)
+|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|. ..++|+.|++++| ++|++|
T Consensus 265 -~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------------~~L~~L 323 (457)
T 3bz5_A 265 -DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------------PKLVYL 323 (457)
T ss_dssp -CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC---------------TTCCEE
T ss_pred -CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc---------------ccCCEE
Confidence 34455566666555554 34566677777777766665553 2344555544333 567777
Q ss_pred EcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCCh
Q 047519 598 DLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIP 677 (892)
Q Consensus 598 ~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 677 (892)
++++|++++. + +++ ++.|+.||+++|++++
T Consensus 324 ~L~~N~l~~l-~---l~~-------------------------------------------l~~L~~L~l~~N~l~~--- 353 (457)
T 3bz5_A 324 YLNNTELTEL-D---VSH-------------------------------------------NTKLKSLSCVNAHIQD--- 353 (457)
T ss_dssp ECTTCCCSCC-C---CTT-------------------------------------------CTTCSEEECCSSCCCB---
T ss_pred ECCCCccccc-c---ccc-------------------------------------------CCcCcEEECCCCCCCC---
Confidence 7777777753 2 111 5567778888887774
Q ss_pred hhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519 678 EVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS 731 (892)
Q Consensus 678 ~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 731 (892)
++.|..|+ +++|+++|. +++..|+.+++++|+++|.+|..+..
T Consensus 354 -----l~~L~~L~-l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 354 -----FSSVGKIP-ALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp -----CTTGGGSS-GGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred -----cccccccc-ccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 24566777 888888865 35567788888888888888876543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.7e-34 Score=328.39 Aligned_cols=346 Identities=23% Similarity=0.301 Sum_probs=235.3
Q ss_pred CCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccc
Q 047519 280 DLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSV 359 (892)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l 359 (892)
.+++++.|++.++.+.. +| .+..+++|++|+++ +|.+.+..| + .++++|++|++++|.+++..+ +
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls---~n~l~~~~~-~-------~~l~~L~~L~l~~n~l~~~~~--~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFS---NNQLTDITP-L-------KNLTKLVDILMNNNQIADITP--L 108 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECC---SSCCCCCGG-G-------TTCTTCCEEECCSSCCCCCGG--G
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECC---CCccCCchh-h-------hccccCCEEECCCCccccChh--h
Confidence 35677888888877764 44 36677777777777 777665444 6 677777777777777764433 6
Q ss_pred cCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCcc
Q 047519 360 YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQ 439 (892)
Q Consensus 360 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 439 (892)
.++++|++|++++|.+++. + .+..+++|++|++++|.+ .+ ++....+++|++|+++ |.+..++. +..+++|+
T Consensus 109 ~~l~~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~l~~n~l--~~-~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~ 180 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQITDI-D--PLKNLTNLNRLELSSNTI--SD-ISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLE 180 (466)
T ss_dssp TTCTTCCEEECCSSCCCCC-G--GGTTCTTCSEEEEEEEEE--CC-CGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCC
T ss_pred cCCCCCCEEECCCCCCCCC-h--HHcCCCCCCEEECCCCcc--CC-ChhhccCCcccEeecC-CcccCchh-hccCCCCC
Confidence 7777777777777777643 2 266677777777777632 22 2222245555555554 33333322 44555555
Q ss_pred EEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCC
Q 047519 440 WFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN 519 (892)
Q Consensus 440 ~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 519 (892)
+|++++|.+.+. + .+..+ + +|++|++++|.+.+..| ++.+++
T Consensus 181 ~L~l~~n~l~~~-~-~l~~l--~--------------------------------~L~~L~l~~n~l~~~~~--~~~l~~ 222 (466)
T 1o6v_A 181 RLDISSNKVSDI-S-VLAKL--T--------------------------------NLESLIATNNQISDITP--LGILTN 222 (466)
T ss_dssp EEECCSSCCCCC-G-GGGGC--T--------------------------------TCSEEECCSSCCCCCGG--GGGCTT
T ss_pred EEECcCCcCCCC-h-hhccC--C--------------------------------CCCEEEecCCccccccc--ccccCC
Confidence 555555554432 1 12332 3 55555555555554444 555677
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEc
Q 047519 520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL 599 (892)
Q Consensus 520 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 599 (892)
|++|++++|++++ + ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++..+ + ..+++|+.|++
T Consensus 223 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~L 294 (466)
T 1o6v_A 223 LDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L--AGLTALTNLEL 294 (466)
T ss_dssp CCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G--TTCTTCSEEEC
T ss_pred CCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--c--cCCCccCeEEc
Confidence 7888888877774 3 356777888888888888877544 7778888888888888876544 2 67788888888
Q ss_pred CCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhh
Q 047519 600 SHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV 679 (892)
Q Consensus 600 s~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~ 679 (892)
++|++++..| +. .+++|+.|++++|++++..|
T Consensus 295 ~~n~l~~~~~---~~-------------------------------------------~l~~L~~L~L~~n~l~~~~~-- 326 (466)
T 1o6v_A 295 NENQLEDISP---IS-------------------------------------------NLKNLTYLTLYFNNISDISP-- 326 (466)
T ss_dssp CSSCCSCCGG---GG-------------------------------------------GCTTCSEEECCSSCCSCCGG--
T ss_pred CCCcccCchh---hc-------------------------------------------CCCCCCEEECcCCcCCCchh--
Confidence 8888875433 11 15678888899998887665
Q ss_pred hcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519 680 VGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747 (892)
Q Consensus 680 ~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 747 (892)
+..+++|+.|+ +++|++++. ..++++++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 327 ~~~l~~L~~L~-l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 VSSLTKLQRLF-FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGGCTTCCEEE-CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCccCCEeE-CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 77888999998 999999865 468889999999999999988776 8889999999999999987
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.7e-34 Score=325.25 Aligned_cols=347 Identities=24% Similarity=0.274 Sum_probs=271.5
Q ss_pred CCCCcceec---ccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhc
Q 047519 258 LFEQDDTLG---QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVF 334 (892)
Q Consensus 258 ~l~~L~~L~---~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~ 334 (892)
.+++++.|+ +.+. .+| .+..+++|++|++++|.+++..| ++++++|++|+++ +|.+.+..| +
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~---~n~l~~~~~-~------ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN---NNQIADITP-L------ 108 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC---SSCCCCCGG-G------
T ss_pred HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECC---CCccccChh-h------
Confidence 356677777 3333 354 47889999999999999987644 9999999999999 999987665 8
Q ss_pred cCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCC
Q 047519 335 VRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPN 414 (892)
Q Consensus 335 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 414 (892)
.++++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|+++++ ..+ .+....+++
T Consensus 109 -~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~~---~~~-~~~~~~l~~ 178 (466)
T 1o6v_A 109 -ANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGNQ---VTD-LKPLANLTT 178 (466)
T ss_dssp -TTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEES---CCC-CGGGTTCTT
T ss_pred -cCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCCc---ccC-chhhccCCC
Confidence 8999999999999999865 33 8999999999999999985 33 4899999999999754 222 233348999
Q ss_pred ccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519 415 LFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL 494 (892)
Q Consensus 415 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~ 494 (892)
|++|++++|.++.++. +..+++|++|++++|.+.+..| +..+ ++|+.|++++|.+++.
T Consensus 179 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~l~~~----------------- 236 (466)
T 1o6v_A 179 LERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGIL--TNLDELSLNGNQLKDI----------------- 236 (466)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGC--TTCCEEECCSSCCCCC-----------------
T ss_pred CCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--cccc--CCCCEEECCCCCcccc-----------------
Confidence 9999999999998864 8899999999999999987665 4555 7788888887766542
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
..+..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 237 -----------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 237 -----------------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp -----------------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred -----------------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 124456677777777777775433 6777777788888777777433 6777788888888
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (892)
+|++.+..+ +..+++|+.|++++|++++..|. .
T Consensus 296 ~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~---~---------------------------------------- 328 (466)
T 1o6v_A 296 ENQLEDISP----ISNLKNLTYLTLYFNNISDISPV---S---------------------------------------- 328 (466)
T ss_dssp SSCCSCCGG----GGGCTTCSEEECCSSCCSCCGGG---G----------------------------------------
T ss_pred CCcccCchh----hcCCCCCCEEECcCCcCCCchhh---c----------------------------------------
Confidence 888766544 26778888888888888765441 1
Q ss_pred HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccc
Q 047519 655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ 728 (892)
Q Consensus 655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 728 (892)
.+++|+.|++++|++++. ..+.++++|+.|+ +++|++++.+| +.++++|+.|++++|++++ +|..
T Consensus 329 ---~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~-l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 329 ---SLTKLQRLFFYNNKVSDV--SSLANLTNINWLS-AGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp ---GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE-CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred ---cCccCCEeECCCCccCCc--hhhccCCCCCEEe-CCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence 156788888899988864 4688899999998 99999998877 8899999999999999986 4443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-35 Score=334.83 Aligned_cols=348 Identities=20% Similarity=0.181 Sum_probs=259.6
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEcc
Q 047519 342 AEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421 (892)
Q Consensus 342 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 421 (892)
+.++.+++.++ .+|..+. +++++|+|++|.+++..+ ..|.++++|++|+|++| .+.+..+
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n--~i~~~~~-------------- 73 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNEN--IVSAVEP-------------- 73 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTS--CCCEECT--------------
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECH-hHccCCCCCCEEECCCC--ccCEeCh--------------
Confidence 56777777776 5665543 578888888888875544 67777777777777777 4334333
Q ss_pred CCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEEC
Q 047519 422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDM 501 (892)
Q Consensus 422 ~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L 501 (892)
..|..+++|++|+|++|++++..+..+..+ ++|++|++++|.+++..+..+..+. +|++|++
T Consensus 74 --------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~--------~L~~L~l 135 (477)
T 2id5_A 74 --------GAFNNLFNLRTLGLRSNRLKLIPLGVFTGL--SNLTKLDISENKIVILLDYMFQDLY--------NLKSLEV 135 (477)
T ss_dssp --------TTTTTCTTCCEEECCSSCCCSCCTTSSTTC--TTCCEEECTTSCCCEECTTTTTTCT--------TCCEEEE
T ss_pred --------hhhhCCccCCEEECCCCcCCccCcccccCC--CCCCEEECCCCccccCChhHccccc--------cCCEEEC
Confidence 344555555555555555554333344444 5555555555555555554444444 6677777
Q ss_pred CCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCC
Q 047519 502 RMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 581 (892)
Q Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 581 (892)
++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+.+.
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 77777766677788888899999999998876667788899999999999999887777888899999999999988887
Q ss_pred CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhh
Q 047519 582 IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTI 661 (892)
Q Consensus 582 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 661 (892)
+|... ....+|+.|++++|+++ .+|...+. .+++
T Consensus 216 ~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~~~-------------------------------------------~l~~ 249 (477)
T 2id5_A 216 MTPNC--LYGLNLTSLSITHCNLT-AVPYLAVR-------------------------------------------HLVY 249 (477)
T ss_dssp ECTTT--TTTCCCSEEEEESSCCC-SCCHHHHT-------------------------------------------TCTT
T ss_pred cCccc--ccCccccEEECcCCccc-ccCHHHhc-------------------------------------------Cccc
Confidence 77765 45568999999999998 44433222 1678
Q ss_pred heeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECC
Q 047519 662 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 741 (892)
Q Consensus 662 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 741 (892)
|+.|+|++|++++..+..+.++++|+.|+ |++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQ-LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEE-CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred cCeeECCCCcCCccChhhccccccCCEEE-CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 89999999999988888899999999999 99999999999999999999999999999998888889999999999999
Q ss_pred CCcCcccCCCCCCCCcccCCccCCCCCCCCCCC
Q 047519 742 YNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPL 774 (892)
Q Consensus 742 ~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~ 774 (892)
+|++++..+....+.......+.++...|..|.
T Consensus 329 ~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 329 SNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp SSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 999997765322222223355677777776553
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=320.08 Aligned_cols=345 Identities=19% Similarity=0.133 Sum_probs=226.9
Q ss_pred cEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCC
Q 047519 309 VVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKL 387 (892)
Q Consensus 309 ~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 387 (892)
+.++.+ ++.++ .+| .+ .+++++|++++|.+++..|..|.++++|++|+|++|.+++..| ..|.++
T Consensus 14 ~~v~c~---~~~l~-~ip~~~---------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l 79 (477)
T 2id5_A 14 RAVLCH---RKRFV-AVPEGI---------PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNL 79 (477)
T ss_dssp TEEECC---SCCCS-SCCSCC---------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTC
T ss_pred CEEEeC---CCCcC-cCCCCC---------CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCC
Confidence 466666 66664 455 44 4689999999999999889999999999999999999997666 789999
Q ss_pred CCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCCchhhhhhCCCccc
Q 047519 388 KNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY 465 (892)
Q Consensus 388 ~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~ 465 (892)
++|++|+|++| .+....+..+ .+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 80 ~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---------------- 141 (477)
T 2id5_A 80 FNLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV---------------- 141 (477)
T ss_dssp TTCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC----------------
T ss_pred ccCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc----------------
Confidence 99999999998 4333322222 455555555555555522 334444555555555555544
Q ss_pred EEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCc
Q 047519 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLE 545 (892)
Q Consensus 466 ~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 545 (892)
+..+..+..+. +|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 142 ----------~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 142 ----------YISHRAFSGLN--------SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp ----------EECTTSSTTCT--------TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred ----------eeChhhccCCC--------CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 44443333333 555555555555555555566666777777777777666666666777777
Q ss_pred EEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCC
Q 047519 546 VLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNN 625 (892)
Q Consensus 546 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~ 625 (892)
+|++++|.+.+.+|.......+|+.|++++|++++..+..+ ..+++|+.|+|++|++++..+.. +..
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~---------- 270 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV--RHLVYLRFLNLSYNPISTIEGSM-LHE---------- 270 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH--TTCTTCCEEECCSSCCCEECTTS-CTT----------
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh--cCccccCeeECCCCcCCccChhh-ccc----------
Confidence 77777776666666555555577777777777654332233 56677777777777776443322 111
Q ss_pred CccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhc
Q 047519 626 SVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLL 705 (892)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l 705 (892)
++.|+.|+|++|++++..|..|.++++|+.|+ |++|+|++..+..|
T Consensus 271 ---------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 271 ---------------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN-VSGNQLTTLEESVF 316 (477)
T ss_dssp ---------------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEE-CCSSCCSCCCGGGB
T ss_pred ---------------------------------cccCCEEECCCCccceECHHHhcCcccCCEEE-CCCCcCceeCHhHc
Confidence 55677788888888777777888888888887 88888887777778
Q ss_pred cCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519 706 RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 706 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 751 (892)
..+++|+.|+|++|.+.+..+... -...+..+++.++...+.-|.
T Consensus 317 ~~l~~L~~L~l~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 317 HSVGNLETLILDSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp SCGGGCCEEECCSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEESG
T ss_pred CCCcccCEEEccCCCccCccchHh-HHhhhhccccCccCceeCCch
Confidence 888888888888888876543211 012233344555655555553
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.7e-34 Score=307.79 Aligned_cols=234 Identities=30% Similarity=0.505 Sum_probs=204.4
Q ss_pred cccEEECCC-CccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519 495 THKVLDMRM-NNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573 (892)
Q Consensus 495 ~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 573 (892)
.|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 455555553 5566667777888888899999999888888888888899999999999998888888888999999999
Q ss_pred cCCcCCCCCCCCCCCcCCC-CccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccch
Q 047519 574 RSNRFWGPIGDNTTIVPFP-RFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGID 652 (892)
Q Consensus 574 ~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (892)
++|++++.+|..+ ..++ .|++|++++|++++.+|..+ ..
T Consensus 157 ~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~------------------------------------- 196 (313)
T 1ogq_A 157 DGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN------------------------------------- 196 (313)
T ss_dssp CSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG-------------------------------------
T ss_pred cCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC-------------------------------------
Confidence 9999988888776 7777 89999999999998888653 11
Q ss_pred hhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCC
Q 047519 653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL 732 (892)
Q Consensus 653 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 732 (892)
++ |+.|++++|++++.+|..+..+++|+.|+ +++|++++.+|. +..+++|++|+|++|++++.+|..|..+
T Consensus 197 ------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 197 ------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH-LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp ------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEE-CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred ------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEE-CCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence 33 88999999999999999999999999999 999999987776 8999999999999999999999999999
Q ss_pred CCCCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCCCCCCC
Q 047519 733 KYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESC 778 (892)
Q Consensus 733 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~~~c 778 (892)
++|++|++++|+++|.+|....+..+....+.||+++||.|+. .|
T Consensus 268 ~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 9999999999999999999888888999999999999998875 56
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.4e-32 Score=302.49 Aligned_cols=349 Identities=12% Similarity=0.099 Sum_probs=199.4
Q ss_pred cCCCCCCCCCCcc-ccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCC-cCcCCCCCC
Q 047519 41 KMMSWKEDADCCS-WDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISS-GFSQLRSLT 118 (892)
Q Consensus 41 ~l~~w~~~~~~c~-w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~ 118 (892)
.+++|..+.+||. |.+..|.-..-+| ........... .-..++++++|++++|.+.. +|. .+..+++|+
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~ 72 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVE 72 (390)
T ss_dssp -----CCEECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCS
T ss_pred CcCCCCCccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhh--CChhHhcccccCc
Confidence 3678988888875 5555553221122 22111111111 23457899999999999887 565 478999999
Q ss_pred eEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCccc
Q 047519 119 LLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFI 197 (892)
Q Consensus 119 ~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~ 197 (892)
+|+|++|.+.+..|..++ .+++|++|+++++.+.+..|..+. ++++|++|++++|.+....+.. ..+ ++|+
T Consensus 73 ~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l--~~L~ 144 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQ----NVPLLTVLVLERNDLSSLPRGIFHNT--PKLT 144 (390)
T ss_dssp EEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTC--TTCC
T ss_pred EEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhc----CCCCCCEEECCCCccCcCCHHHhcCC--CCCc
Confidence 999999999877677888 788888888877765555555566 7777777777777766544444 566 6777
Q ss_pred EEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhh
Q 047519 198 YLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDY 277 (892)
Q Consensus 198 ~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~ 277 (892)
+|++++| .+++..| ..+..+++|++|++++|.+.+. .
T Consensus 145 ~L~L~~n--~l~~~~~----------------~~~~~l~~L~~L~l~~n~l~~~-------------------------~ 181 (390)
T 3o6n_A 145 TLSMSNN--NLERIED----------------DTFQATTSLQNLQLSSNRLTHV-------------------------D 181 (390)
T ss_dssp EEECCSS--CCCBCCT----------------TTTSSCTTCCEEECCSSCCSBC-------------------------C
T ss_pred EEECCCC--ccCccCh----------------hhccCCCCCCEEECCCCcCCcc-------------------------c
Confidence 7777776 6655555 5566666666666666644321 2
Q ss_pred hcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCc
Q 047519 278 IGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPS 357 (892)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~ 357 (892)
+..+++|++|++++|.+.+ +...++|+.|+++ +|.+..... ...++|++|++++|.+++. .
T Consensus 182 ~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~---~n~l~~~~~---------~~~~~L~~L~l~~n~l~~~--~ 242 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLST-----LAIPIAVEELDAS---HNSINVVRG---------PVNVELTILKLQHNNLTDT--A 242 (390)
T ss_dssp GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECC---SSCCCEEEC---------CCCSSCCEEECCSSCCCCC--G
T ss_pred cccccccceeecccccccc-----cCCCCcceEEECC---CCeeeeccc---------cccccccEEECCCCCCccc--H
Confidence 3445566666666665543 2233456666666 555543311 2234556666666655532 3
Q ss_pred cccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCC
Q 047519 358 SVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQ 437 (892)
Q Consensus 358 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 437 (892)
.+..+++|++|++++|.+++..+ ..+..+++|++|++++| +++.+|..+..+++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-------------------------~l~~~~~~~~~l~~ 296 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNN-------------------------RLVALNLYGQPIPT 296 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECCSS-------------------------CCCEEECSSSCCTT
T ss_pred HHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEECCCC-------------------------cCcccCcccCCCCC
Confidence 45555566666666665554444 45555555555555555 44444444445555
Q ss_pred ccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCc
Q 047519 438 LQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG 508 (892)
Q Consensus 438 L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~ 508 (892)
|++|++++|++. .+|..+..+ ++|+.|++++|+++... +..+ ++|+.|++++|.+..
T Consensus 297 L~~L~L~~n~l~-~~~~~~~~l--~~L~~L~L~~N~i~~~~---~~~~--------~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 297 LKVLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLK---LSTH--------HTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCEEECCSSCCC-CCGGGHHHH--TTCSEEECCSSCCCCCC---CCTT--------CCCSEEECCSSCEEH
T ss_pred CCEEECCCCcce-ecCcccccc--CcCCEEECCCCccceeC---chhh--------ccCCEEEcCCCCccc
Confidence 555555555555 334444444 55555555555555442 1112 255566666666554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.1e-32 Score=303.31 Aligned_cols=333 Identities=21% Similarity=0.233 Sum_probs=214.3
Q ss_pred CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCc
Q 047519 337 GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNL 415 (892)
Q Consensus 337 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L 415 (892)
.+++++.|++++|.++...+..+..+++|++|++++|.+++..+ ..|..+++|++|++++| .+.+..+..+ .+++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-hhccCCCCcCEEECCCC--CCCcCCHHHhcCCCCC
Confidence 45677777777777775444456777777777777777764433 56777777777777777 4444444333 55566
Q ss_pred cEEEccCCCCCCcchh-hhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519 416 FGLGLSACNISEFPDI-LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL 494 (892)
Q Consensus 416 ~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~ 494 (892)
++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+++..
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~---------------- 181 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVD---------------- 181 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC--TTCCEEECCSSCCSBCC----------------
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC--CCCCEEECCCCcCCccc----------------
Confidence 6666666666555543 3555556666665555554444444444 55555555555444321
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
+..+++|+.|++++|.+++ +...++|++|++++|++... |.. ..++|+.|+++
T Consensus 182 -------------------~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~ 234 (390)
T 3o6n_A 182 -------------------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQ 234 (390)
T ss_dssp -------------------GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECC
T ss_pred -------------------cccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECC
Confidence 3334556666666665552 22334566666666666552 322 24567777777
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (892)
+|.+++. .. +..+++|++|++++|.+++..|..+ .
T Consensus 235 ~n~l~~~--~~--l~~l~~L~~L~Ls~n~l~~~~~~~~-~---------------------------------------- 269 (390)
T 3o6n_A 235 HNNLTDT--AW--LLNYPGLVEVDLSYNELEKIMYHPF-V---------------------------------------- 269 (390)
T ss_dssp SSCCCCC--GG--GGGCTTCSEEECCSSCCCEEESGGG-T----------------------------------------
T ss_pred CCCCccc--HH--HcCCCCccEEECCCCcCCCcChhHc-c----------------------------------------
Confidence 7776543 22 2667777777777777776555432 1
Q ss_pred HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519 655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 734 (892)
Q Consensus 655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 734 (892)
.+++|+.|++++|+++ .+|..+..+++|+.|+ +++|+++ .+|..+..+++|+.|+|++|+++.. | +..+++
T Consensus 270 ---~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~-L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~ 340 (390)
T 3o6n_A 270 ---KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD-LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT 340 (390)
T ss_dssp ---TCSSCCEEECCSSCCC-EEECSSSCCTTCCEEE-CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred ---ccccCCEEECCCCcCc-ccCcccCCCCCCCEEE-CCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhcc
Confidence 1566778888888877 4566677788899998 9999998 6677788899999999999999854 3 778889
Q ss_pred CCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCC
Q 047519 735 LSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGF 772 (892)
Q Consensus 735 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~ 772 (892)
|+.|++++|++++.... ..+..+....+.+++..|..
T Consensus 341 L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 341 LKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred CCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 99999999999875332 23445555667777777764
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.4e-31 Score=314.43 Aligned_cols=348 Identities=13% Similarity=0.124 Sum_probs=214.8
Q ss_pred cCCCCCCCCCCcc----ccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCC
Q 047519 41 KMMSWKEDADCCS----WDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRS 116 (892)
Q Consensus 41 ~l~~w~~~~~~c~----w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~ 116 (892)
.+++|..+.+||. |.++.|+. ++ +-........+ .-..+.+++.|++++|.+... .+..|+.+++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~---~i---~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~ 76 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDV---HI---DMQTQDVYFGF----EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQ 76 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSC---EE---CSSCCCCEESC----SSGGGCCCSEEEESSCEESEE-CTHHHHHCCC
T ss_pred cccCCCCCCcCcccCcCceeEecCc---ee---cccccccccCc----ccccCCCceEEEeeCCCCCCc-CHHHHccCCC
Confidence 6889988778874 66665542 22 11111111111 224578999999999999873 3345789999
Q ss_pred CCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCc
Q 047519 117 LTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEES 195 (892)
Q Consensus 117 L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~ 195 (892)
|++|+|++|.+.+..|..|+ .+++|++|+|+++.+.+..|..++ ++++|++|+|++|.+.+..+.. ..+ ++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l--~~ 148 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQ----NVPLLTVLVLERNDLSSLPRGIFHNT--PK 148 (597)
T ss_dssp CSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTC--TT
T ss_pred CcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHc----CCCCCCEEEeeCCCCCCCCHHHhccC--CC
Confidence 99999999999987777888 888888888887775555555566 7777777777777776555554 666 77
Q ss_pred ccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecCh
Q 047519 196 FIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDS 275 (892)
Q Consensus 196 L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~ 275 (892)
|++|+|++| .+++..| ..++.+++|++|++++|.+.+.
T Consensus 149 L~~L~Ls~N--~l~~~~~----------------~~~~~l~~L~~L~L~~N~l~~~------------------------ 186 (597)
T 3oja_B 149 LTTLSMSNN--NLERIED----------------DTFQATTSLQNLQLSSNRLTHV------------------------ 186 (597)
T ss_dssp CCEEECCSS--CCCBCCT----------------TTTTTCTTCCEEECTTSCCSBC------------------------
T ss_pred CCEEEeeCC--cCCCCCh----------------hhhhcCCcCcEEECcCCCCCCc------------------------
Confidence 777777777 6666655 5566666777777776654421
Q ss_pred hhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCC
Q 047519 276 DYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSI 355 (892)
Q Consensus 276 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~ 355 (892)
.+..+++|++|++++|.+.+ +...++|+.|+++ +|.+....+.+ .++|+.|++++|.+++
T Consensus 187 -~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls---~n~l~~~~~~~---------~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 187 -DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDAS---HNSINVVRGPV---------NVELTILKLQHNNLTD-- 246 (597)
T ss_dssp -CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECC---SSCCCEEECSC---------CSCCCEEECCSSCCCC--
T ss_pred -ChhhhhhhhhhhcccCcccc-----ccCCchhheeecc---CCccccccccc---------CCCCCEEECCCCCCCC--
Confidence 23445666667776666553 2333456666666 66654332222 2456666666666654
Q ss_pred CccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCC
Q 047519 356 PSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTL 435 (892)
Q Consensus 356 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l 435 (892)
+..+..+++|++|+|++|.+++..| ..|..+++|++|+|++| .++.+|..+..+
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-------------------------~l~~l~~~~~~l 300 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNN-------------------------RLVALNLYGQPI 300 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECTTS-------------------------CCCEEECSSSCC
T ss_pred ChhhccCCCCCEEECCCCccCCCCH-HHhcCccCCCEEECCCC-------------------------CCCCCCcccccC
Confidence 2455566666666666666655444 45555555555555555 444444444555
Q ss_pred CCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc
Q 047519 436 HQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK 509 (892)
Q Consensus 436 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~ 509 (892)
++|+.|+|++|.+. .+|..+..+ ++|+.|++++|.+++.... .+ ++|+.|++++|.+.+.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l--~~L~~L~L~~N~l~~~~~~---~~--------~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLKLS---TH--------HTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHH--TTCSEEECCSSCCCCCCCC---TT--------CCCSEEECCSSCEEHH
T ss_pred CCCcEEECCCCCCC-ccCcccccC--CCCCEEECCCCCCCCcChh---hc--------CCCCEEEeeCCCCCCh
Confidence 66666666666665 345555555 6666666666666554322 12 2566777777776653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=9.7e-32 Score=317.73 Aligned_cols=334 Identities=21% Similarity=0.229 Sum_probs=223.5
Q ss_pred CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCc
Q 047519 337 GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNL 415 (892)
Q Consensus 337 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L 415 (892)
.+.+++.+++++|.+....+..+..+++|++|++++|.+++..+ ..|..+++|++|+|++| .+.+..+..+ .+++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCC--cCCCCCHHHHcCCCCC
Confidence 35677778888877776555566777788888888887775544 56777777777777777 4444444433 55566
Q ss_pred cEEEccCCCCCCcchh-hhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519 416 FGLGLSACNISEFPDI-LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL 494 (892)
Q Consensus 416 ~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~ 494 (892)
++|++++|.++.+|.. |+.+++|++|++++|.+.+..|..+..+ ++|++|++++|.+++..
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~---------------- 187 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVD---------------- 187 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC--TTCCEEECTTSCCSBCC----------------
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC--CcCcEEECcCCCCCCcC----------------
Confidence 6666666655555443 3555555555555555555555445444 55555555555444332
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
+..+++|+.|++++|.+++ +...++|+.|++++|.+... |..+ .++|+.|+++
T Consensus 188 -------------------~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~ 240 (597)
T 3oja_B 188 -------------------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQ 240 (597)
T ss_dssp -------------------GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECC
T ss_pred -------------------hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECC
Confidence 2334556666666665552 23344666677777666552 2222 2567777777
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (892)
+|.+++. ..+ ..+++|+.|+|++|.+++..|..+ +.
T Consensus 241 ~n~l~~~--~~l--~~l~~L~~L~Ls~N~l~~~~~~~~-~~--------------------------------------- 276 (597)
T 3oja_B 241 HNNLTDT--AWL--LNYPGLVEVDLSYNELEKIMYHPF-VK--------------------------------------- 276 (597)
T ss_dssp SSCCCCC--GGG--GGCTTCSEEECCSSCCCEEESGGG-TT---------------------------------------
T ss_pred CCCCCCC--hhh--ccCCCCCEEECCCCccCCCCHHHh-cC---------------------------------------
Confidence 7777653 222 667778888888888776666442 11
Q ss_pred HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519 655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 734 (892)
Q Consensus 655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 734 (892)
+++|+.|+|++|++++ +|..+..+++|+.|+ |++|+++ .+|..+..+++|+.|+|++|.+++. | +..+++
T Consensus 277 ----l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~-Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~ 346 (597)
T 3oja_B 277 ----MQRLERLYISNNRLVA-LNLYGQPIPTLKVLD-LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT 346 (597)
T ss_dssp ----CSSCCEEECTTSCCCE-EECSSSCCTTCCEEE-CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred ----ccCCCEEECCCCCCCC-CCcccccCCCCcEEE-CCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCC
Confidence 5667788888888874 577777888999998 9999999 6788889999999999999999854 3 677889
Q ss_pred CCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 047519 735 LSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP 773 (892)
Q Consensus 735 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 773 (892)
|+.|++++|+++|..+. ..+..+....+.+++..|+.+
T Consensus 347 L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 347 LKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 99999999999987543 245566677788999999864
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=5.7e-31 Score=289.96 Aligned_cols=306 Identities=21% Similarity=0.293 Sum_probs=194.3
Q ss_pred CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519 336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL 415 (892)
Q Consensus 336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 415 (892)
..+++|++|++++|.+.. +| .+..+++|++|++++|.+++ ++ . +..+++|++|++++|.+ .. ++....+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~-~-~~~l~~L~~L~L~~n~i--~~-~~~~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-IS-P-LSNLVKLTNLYIGTNKI--TD-ISALQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCC--CC-CGGGTTCTTC
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-ch-h-hhcCCcCCEEEccCCcc--cC-chHHcCCCcC
Confidence 345666777777766653 33 36666667777777666653 33 1 56666666666666632 22 2222245555
Q ss_pred cEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCc
Q 047519 416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLT 495 (892)
Q Consensus 416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~ 495 (892)
++|++++|.++.++. +..+++|++|++++|.....++. +..+ + +
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l--~--------------------------------~ 156 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNM--T--------------------------------G 156 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTC--T--------------------------------T
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhC--C--------------------------------C
Confidence 555555555554444 44555555555555543322222 3333 4 4
Q ss_pred ccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccC
Q 047519 496 HKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS 575 (892)
Q Consensus 496 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 575 (892)
|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+.|++++|++.+..+ +..+++|++|++++
T Consensus 157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence 5555555555544333 55667777777777777643 32 6677777777777777776443 66777777777777
Q ss_pred CcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhH
Q 047519 576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQI 655 (892)
Q Consensus 576 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (892)
|++++..+ + ..+++|++|++++|.+++. + . +.
T Consensus 231 n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~-~-~-~~----------------------------------------- 262 (347)
T 4fmz_A 231 NKITDLSP--L--ANLSQLTWLEIGTNQISDI-N-A-VK----------------------------------------- 262 (347)
T ss_dssp SCCCCCGG--G--TTCTTCCEEECCSSCCCCC-G-G-GT-----------------------------------------
T ss_pred CccCCCcc--h--hcCCCCCEEECCCCccCCC-h-h-Hh-----------------------------------------
Confidence 77765443 2 6677788888888877642 2 1 11
Q ss_pred HHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCC
Q 047519 656 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 735 (892)
Q Consensus 656 ~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 735 (892)
.+++|+.|++++|++++. ..+..+++|+.|+ +++|++++..|..|+++++|+.|+|++|++++..| +..+++|
T Consensus 263 --~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~-L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 263 --DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLF-LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp --TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE-CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred --cCCCcCEEEccCCccCCC--hhhcCCCCCCEEE-CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 156778888888888753 3577888888887 88888888888888888888888888888886655 7788888
Q ss_pred CEEECCCCcCc
Q 047519 736 SVLNLSYNQFE 746 (892)
Q Consensus 736 ~~L~ls~N~l~ 746 (892)
++|++++|+++
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 88888888875
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-30 Score=286.58 Aligned_cols=307 Identities=21% Similarity=0.336 Sum_probs=233.4
Q ss_pred ccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccCh
Q 047519 302 KSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTEL 381 (892)
Q Consensus 302 l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 381 (892)
+..+++|++|+++ +|.+. .+|.+ ..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++
T Consensus 40 ~~~l~~L~~L~l~---~~~i~-~~~~~-------~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~- 104 (347)
T 4fmz_A 40 QEELESITKLVVA---GEKVA-SIQGI-------EYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS- 104 (347)
T ss_dssp HHHHTTCSEEECC---SSCCC-CCTTG-------GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-
T ss_pred chhcccccEEEEe---CCccc-cchhh-------hhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-
Confidence 5678999999999 88875 45667 8899999999999999854 44 9999999999999999985 44
Q ss_pred hhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCC
Q 047519 382 YDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461 (892)
Q Consensus 382 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 461 (892)
.+..+++|++|++++|.+ .+. +....+++|++|++++|.....+..+..+++|++|++++|.+.+..+ +..+
T Consensus 105 -~~~~l~~L~~L~l~~n~i--~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l-- 176 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNEDNI--SDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANL-- 176 (347)
T ss_dssp -GGTTCTTCSEEECTTSCC--CCC-GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGC--
T ss_pred -HHcCCCcCCEEECcCCcc--cCc-hhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccC--
Confidence 589999999999999944 333 33448999999999999666444458999999999999999986544 5555
Q ss_pred CcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCC
Q 047519 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541 (892)
Q Consensus 462 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 541 (892)
++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+
T Consensus 177 ~~L~~L~l~~n~l~~~~~----------------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~~ 220 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP----------------------------------LASLTSLHYFTAYVNQITDITP--VANM 220 (347)
T ss_dssp TTCSEEECTTSCCCCCGG----------------------------------GGGCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred CCCCEEEccCCccccccc----------------------------------ccCCCccceeecccCCCCCCch--hhcC
Confidence 777777777776654321 4455566666666666664333 5666
Q ss_pred CCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhc
Q 047519 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH 621 (892)
Q Consensus 542 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~ 621 (892)
++|++|++++|++++..+ +..+++|++|++++|.+++. + . +..+++|++|++++|++++. | . +.
T Consensus 221 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~--~~~l~~L~~L~l~~n~l~~~-~-~-~~------- 284 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-A--VKDLTKLKMLNVGSNQISDI-S-V-LN------- 284 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-G--GTTCTTCCEEECCSSCCCCC-G-G-GG-------
T ss_pred CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-h--HhcCCCcCEEEccCCccCCC-h-h-hc-------
Confidence 777777777777766433 66777777777777777553 2 2 26677888888888887743 2 1 11
Q ss_pred ccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCc
Q 047519 622 GNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI 701 (892)
Q Consensus 622 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~i 701 (892)
.+++|+.|++++|++++..|..++.+++|+.|+ +++|++++..
T Consensus 285 ------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~-L~~n~l~~~~ 327 (347)
T 4fmz_A 285 ------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF-LSQNHITDIR 327 (347)
T ss_dssp ------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE-CCSSSCCCCG
T ss_pred ------------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEE-ccCCcccccc
Confidence 156788899999999888888899999999998 9999999776
Q ss_pred chhccCCCCCCeeeCCCCcCC
Q 047519 702 PSLLRNLTEVESLDLSSNMLV 722 (892)
Q Consensus 702 p~~l~~l~~L~~L~Ls~N~l~ 722 (892)
| +..+++|+.||+++|.++
T Consensus 328 ~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 328 P--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp G--GGGCTTCSEESSSCC---
T ss_pred C--hhhhhccceeehhhhccc
Confidence 6 888999999999999886
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.3e-31 Score=291.52 Aligned_cols=276 Identities=13% Similarity=0.133 Sum_probs=158.3
Q ss_pred CCCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCC----CCCCCccccceEecC--------CCCeEEEEEC
Q 047519 4 KLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWK----EDADCCSWDGVTCDT--------VAGHVIGLDL 71 (892)
Q Consensus 4 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~----~~~~~c~w~gv~C~~--------~~~~v~~L~L 71 (892)
..+..+|++||++||+++..+ +. +.+.+|. ...++|.|.|+.|+. ..++|+.|+|
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~--~~-----------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L 88 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNAD--RN-----------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL 88 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHC--CT-----------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEE
T ss_pred cccCchHHHHHHHHHHhccCC--ch-----------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEc
Confidence 356778999999999998544 21 2567893 467899999999952 2356778888
Q ss_pred CCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcc
Q 047519 72 SCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIF 151 (892)
Q Consensus 72 ~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~ 151 (892)
+++.++ .+++ .+.++++|++|+|++|.+.. +|..++++++|++|+|++|.+. .+|..++ ++++|++|++++|
T Consensus 89 ~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~--~l~~L~~L~L~~n 160 (328)
T 4fcg_A 89 RSVPLP-QFPD--QAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIA--SLNRLRELSIRAC 160 (328)
T ss_dssp ESSCCS-SCCS--CGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGG--GCTTCCEEEEEEE
T ss_pred cCCCch-hcCh--hhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHh--cCcCCCEEECCCC
Confidence 877777 5666 67777788888888777773 7777777778888888777776 6676666 5555555555443
Q ss_pred cCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhccccccccc
Q 047519 152 AFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMK 230 (892)
Q Consensus 152 ~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~ 230 (892)
...+.+|..+. . .. .... ..+ ++|++|++++| .++ .+| .
T Consensus 161 ~~~~~~p~~~~----~------~~---------~~~~~~~l--~~L~~L~L~~n--~l~-~lp----------------~ 200 (328)
T 4fcg_A 161 PELTELPEPLA----S------TD---------ASGEHQGL--VNLQSLRLEWT--GIR-SLP----------------A 200 (328)
T ss_dssp TTCCCCCSCSE----E------EC----------CCCEEES--TTCCEEEEEEE--CCC-CCC----------------G
T ss_pred CCccccChhHh----h------cc---------chhhhccC--CCCCEEECcCC--CcC-cch----------------H
Confidence 33444443332 1 00 0000 123 45555555555 444 334 3
Q ss_pred ccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcE
Q 047519 231 DLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVV 310 (892)
Q Consensus 231 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 310 (892)
.++++++|++|++++|.+.+ +|. .+..+++|++|++++|.+.+.+|..++.+++|++
T Consensus 201 ~l~~l~~L~~L~L~~N~l~~----------------------l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLSA----------------------LGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp GGGGCTTCCEEEEESSCCCC----------------------CCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred hhcCCCCCCEEEccCCCCCc----------------------Cch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 44444555555555543321 222 3444555555555555555555555555555555
Q ss_pred EecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCC
Q 047519 311 LSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSN 373 (892)
Q Consensus 311 L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 373 (892)
|+++ +|.+.+.+| .+ .++++|++|++++|.+.+.+|..++++++|+.+++..+
T Consensus 258 L~L~---~n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 258 LILK---DCSNLLTLPLDI-------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECT---TCTTCCBCCTTG-------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EECC---CCCchhhcchhh-------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 5555 444444444 44 44444444444444444444444444444444444433
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.9e-28 Score=267.64 Aligned_cols=125 Identities=26% Similarity=0.313 Sum_probs=62.0
Q ss_pred CcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEE
Q 047519 340 HYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGL 418 (892)
Q Consensus 340 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L 418 (892)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+ ..|.++++|++|++++| .+.+..+..+ .+++|++|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINN--KISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSS--CCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCC--cCCeeCHHHhcCCCCCCEE
Confidence 4555555555554 3443332 455555666555553333 44555555555555555 3333333333 44455555
Q ss_pred EccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCC
Q 047519 419 GLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFL 474 (892)
Q Consensus 419 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 474 (892)
++++|.++.+|..+. ++|++|++++|.+.+..+..+..+ ++|+.|++++|.+
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l 157 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPL 157 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTC--TTCCEEECCSSCC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCC--ccccEEECCCCcC
Confidence 555555554444332 456666666665554444444444 5555555555544
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-28 Score=269.00 Aligned_cols=126 Identities=24% Similarity=0.280 Sum_probs=63.2
Q ss_pred CcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEE
Q 047519 340 HYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGL 418 (892)
Q Consensus 340 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L 418 (892)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+ ..|.++++|++|++++| .+.+..+..+ .+++|++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRK-DDFKGLQHLYALVLVNN--KISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS--CCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCH-hHhhCCCCCcEEECCCC--ccCccCHhHhhCcCCCCEE
Confidence 4555555555554 4444432 456666666666553333 45555555666666555 3333323322 44444444
Q ss_pred EccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCC
Q 047519 419 GLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT 475 (892)
Q Consensus 419 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 475 (892)
++++|.++.+|..+. ++|++|++++|.+.+..+..+..+ ++|+.|++++|.++
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL--RNMNCIEMGGNPLE 160 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSC--SSCCEEECCSCCCB
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCC--ccCCEEECCCCccc
Confidence 444444444444332 455555555555554444444444 55555555555543
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.6e-28 Score=266.71 Aligned_cols=267 Identities=21% Similarity=0.240 Sum_probs=181.8
Q ss_pred CCccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecC
Q 047519 413 PNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFD 491 (892)
Q Consensus 413 ~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~ 491 (892)
++|+.|++++|.++.+ |..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.++..++..+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~--------- 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL--RKLQKLYISKNHLVEIPPNLP--------- 122 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC--TTCCEEECCSSCCCSCCSSCC---------
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc--CCCCEEECCCCcCCccCcccc---------
Confidence 3455555555555544 3356666777777777777766656666665 677777777776664433222
Q ss_pred CCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCC--CCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCC
Q 047519 492 SNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLE--GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQ 569 (892)
Q Consensus 492 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 569 (892)
++|++|++++|.+.+..+..|..+++|++|++++|.++ +..|..+..+ +|++|++++|++++ +|..+. ++|+
T Consensus 123 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~ 196 (332)
T 2ft3_A 123 --SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLN 196 (332)
T ss_dssp --TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCS
T ss_pred --ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCC
Confidence 16677777777777666666777777888888887775 3556666666 77888888887776 454443 6777
Q ss_pred EEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEc
Q 047519 570 VLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIK 649 (892)
Q Consensus 570 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (892)
+|++++|.+++..+..+ ..+++|++|++++|++++..|..+ .
T Consensus 197 ~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~-~----------------------------------- 238 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSL-S----------------------------------- 238 (332)
T ss_dssp CCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGG-G-----------------------------------
T ss_pred EEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhHh-h-----------------------------------
Confidence 88888888777666655 677778888888888776544332 1
Q ss_pred cchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCC------CCCCeeeCCCCcCC-
Q 047519 650 GIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNL------TEVESLDLSSNMLV- 722 (892)
Q Consensus 650 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l------~~L~~L~Ls~N~l~- 722 (892)
.+++|+.|++++|+++ .+|..+..+++|+.|+ +++|++++..+..|... ++|+.|++++|.+.
T Consensus 239 --------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~-l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 239 --------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY-LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp --------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE-CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred --------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEE-CCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 1566778888888887 7777788888888887 88888886666666543 56788888888887
Q ss_pred -CCCccccCCCCCCCEEECCCCc
Q 047519 723 -GHIPTQLTSLKYLSVLNLSYNQ 744 (892)
Q Consensus 723 -~~ip~~l~~l~~L~~L~ls~N~ 744 (892)
+..|..|..++.|+.+++++|+
T Consensus 309 ~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 309 WEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGSCGGGGTTBCCSTTEEC----
T ss_pred cccCcccccccchhhhhhccccc
Confidence 5677778888888888888774
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.3e-32 Score=312.25 Aligned_cols=288 Identities=19% Similarity=0.174 Sum_probs=160.7
Q ss_pred CccEEEccCCCCC-----CcchhhhCCCCccEEEccCCCCCCCCchhhhhh---CCCcccEEEccCCCCCCCCCCCCCCC
Q 047519 414 NLFGLGLSACNIS-----EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDL---GITALYYLDLSNNFLTNIEYFPPTNM 485 (892)
Q Consensus 414 ~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~~~L~~L~Ls~n~l~~~~~~~~~~l 485 (892)
+|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+... ..++|++|++++|.+++.....+..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~- 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS- 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-
Confidence 4555555555555 235556666666666666666554333322210 0135666666666655432110000
Q ss_pred CeeecCCCCcccEEECCCCccCcccccccc-----CCCCCCEEEccCCCCCCC----CCccccCCCCCcEEEccCCCCCC
Q 047519 486 TQLNFDSNLTHKVLDMRMNNFNGKISQKFV-----NSCNLTNLNLNGNRLEGP----LPLSLVNCHHLEVLDVGNNQIND 556 (892)
Q Consensus 486 ~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~ 556 (892)
.+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|++++
T Consensus 165 ---~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 165 ---VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp ---HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred ---HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 011122566666666666544333332 245677777777777643 35556666777777777777655
Q ss_pred Cc-----chhccCCCCCCEEEccCCcCCCC----CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCc
Q 047519 557 NF-----PNWLEILPELQVLILRSNRFWGP----IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSV 627 (892)
Q Consensus 557 ~~-----p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~ 627 (892)
.. +..+..+++|++|++++|.+++. ++..+ ..+++|++|++++|.+++..+..+...+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l----------- 308 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL--RAKESLKELSLAGNELGDEGARLLCETL----------- 308 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCTTCCEEECTTCCCHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH--hhCCCcceEECCCCCCchHHHHHHHHHh-----------
Confidence 32 22233466777777777766542 23322 4466777777777766533221111000
Q ss_pred cccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCC----ChhhhcCccccccccccCCCCCCCCcch
Q 047519 628 EVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNNISHNNLTGDIPS 703 (892)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~~Ls~N~l~~~ip~ 703 (892)
....+.|+.|++++|.+++. +|..+..+++|+.|+ +++|++++..+.
T Consensus 309 ----------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~-Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 309 ----------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ-ISNNRLEDAGVR 359 (461)
T ss_dssp ----------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE-CCSSBCHHHHHH
T ss_pred ----------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE-ccCCccccccHH
Confidence 00024677777777777654 455566667777776 777777655444
Q ss_pred hccC-----CCCCCeeeCCCCcCCC----CCccccCCCCCCCEEECCCCcCcc
Q 047519 704 LLRN-----LTEVESLDLSSNMLVG----HIPTQLTSLKYLSVLNLSYNQFEG 747 (892)
Q Consensus 704 ~l~~-----l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g 747 (892)
.+.. .++|+.|+|++|++++ .+|..+..+++|++|++++|++++
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 4432 5677777777777765 566667777777777777777764
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.1e-27 Score=261.69 Aligned_cols=269 Identities=18% Similarity=0.108 Sum_probs=161.1
Q ss_pred CCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCcccc
Q 047519 282 DKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVY 360 (892)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 360 (892)
++|++|++++|.+++..+..++++++|++|+++ +|.+.+..| .+ .++++|++|++++|.++ .+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~---~n~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~-~l~~~~~ 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI---NNKISKISPGAF-------APLVKLERLYLSKNQLK-ELPEKMP 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC---SSCCCCBCTTTT-------TTCTTCCEEECCSSCCS-BCCSSCC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECC---CCcCCeeCHHHh-------cCCCCCCEEECCCCcCC-ccChhhc
Confidence 467777777777776666677777777777777 777776666 67 77777777777777776 4554443
Q ss_pred CCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCcchhhhCCCCcc
Q 047519 361 ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEFPDILRTLHQLQ 439 (892)
Q Consensus 361 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 439 (892)
++|++|++++|.+++..+ ..+.++++|++|++++|.+...+..+..+ .+++|++|++++|.++.+|..+. ++|+
T Consensus 121 --~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~ 195 (330)
T 1xku_A 121 --KTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLT 195 (330)
T ss_dssp --TTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCS
T ss_pred --ccccEEECCCCcccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCC
Confidence 677777777777774433 66777777777777777443223333333 45556666666665555554332 4555
Q ss_pred EEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCC
Q 047519 440 WFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN 519 (892)
Q Consensus 440 ~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 519 (892)
+|++++|.+++..+..+..+ ++| +.|++++|.+++..+..+..+++
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l--~~L--------------------------------~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGL--NNL--------------------------------AKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp EEECTTSCCCEECTGGGTTC--TTC--------------------------------CEEECCSSCCCEECTTTGGGSTT
T ss_pred EEECCCCcCCccCHHHhcCC--CCC--------------------------------CEEECCCCcCceeChhhccCCCC
Confidence 55555555554444444444 444 44555555554444445555666
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccC------CCCCCEEEccCCcCCC--CCCCCCCCcCC
Q 047519 520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI------LPELQVLILRSNRFWG--PIGDNTTIVPF 591 (892)
Q Consensus 520 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~~--~~~~~~~~~~l 591 (892)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.|++++|++.. ..|..+ ..+
T Consensus 242 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f--~~~ 318 (330)
T 1xku_A 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF--RCV 318 (330)
T ss_dssp CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG--TTC
T ss_pred CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc--ccc
Confidence 666666666666 55556666666666666666666654444432 2566666777766642 222222 556
Q ss_pred CCccEEEcCCCC
Q 047519 592 PRFRIIDLSHNE 603 (892)
Q Consensus 592 ~~L~~L~Ls~N~ 603 (892)
+.++.+++++|+
T Consensus 319 ~~l~~l~L~~N~ 330 (330)
T 1xku_A 319 YVRAAVQLGNYK 330 (330)
T ss_dssp CCGGGEEC----
T ss_pred cceeEEEecccC
Confidence 666777776664
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.6e-32 Score=310.34 Aligned_cols=385 Identities=19% Similarity=0.141 Sum_probs=238.4
Q ss_pred CCCcEEEccCCCCCcCCCc-cccCCCCCcEEecCccccccceee----cc-chhhhhhccCCCCCcCEEEccCCcCCcCC
Q 047519 282 DKRRSITGYVFNFAGGPIN-WKSTLQSTVVLSTTEAEYMAITKA----VK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSI 355 (892)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~~~~n~l~~~----~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~ 355 (892)
++|++|++++|.++..... .+..+++|++|+++ +|.+... ++ .+ ..+++|++|++++|.+++..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~---~~~l~~~~~~~l~~~l-------~~~~~L~~L~Ls~n~l~~~~ 72 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD---DCGLTEARCKDISSAL-------RVNPALAELNLRSNELGDVG 72 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE---SSCCCHHHHHHHHHHH-------HTCTTCCEEECTTCCCHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEcc---CCCCCHHHHHHHHHHH-------HhCCCcCEEeCCCCcCChHH
Confidence 4688899998888764333 36778888899888 8887643 33 56 67788888888888887544
Q ss_pred Ccccc-CCC----CCCEEECcCCcCCC----ccChhhcCCCCCCCEEEcccCCCCCCccccCC-----C-CCCCccEEEc
Q 047519 356 PSSVY-ELE----NLILLRLPSNRLSG----TTELYDFAKLKNLKWLFVSNNRLSLSTKLKVN-----S-SFPNLFGLGL 420 (892)
Q Consensus 356 p~~l~-~l~----~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~-~l~~L~~L~L 420 (892)
+..+. .++ +|++|++++|.++. .++ ..+..+++|++|++++|.+ ....+.. . ..++|++|++
T Consensus 73 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i--~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLL--GDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBC--HHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcC--chHHHHHHHHHHhcCCCcceEEEC
Confidence 43332 344 68888888888873 334 6677888888888888843 2211110 1 2456777777
Q ss_pred cCCCCCC-----cchhhhCCCCccEEEccCCCCCCCCchhhhh-h--CCCcccEEEccCCCCCCCCCCCCCCCCeeecCC
Q 047519 421 SACNISE-----FPDILRTLHQLQWFNLSKNRIHGRISSWMWD-L--GITALYYLDLSNNFLTNIEYFPPTNMTQLNFDS 492 (892)
Q Consensus 421 ~~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~ 492 (892)
++|.++. ++..+..+++|++|++++|.+.+..+..+.. + ..++|++|++++|.+++....
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------ 217 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR------------ 217 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH------------
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH------------
Confidence 7777762 3455666777777777777765433333322 0 013555555555544432100
Q ss_pred CCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCC-----CccccCCCCCcEEEccCCCCCCC----cchhcc
Q 047519 493 NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL-----PLSLVNCHHLEVLDVGNNQINDN----FPNWLE 563 (892)
Q Consensus 493 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~ 563 (892)
.++..+..+++|++|++++|.+++.. +..+..+++|++|++++|++++. ++..+.
T Consensus 218 ----------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 218 ----------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp ----------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 13445555666677777766665321 12223466777777777776653 455555
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCC---CcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCc
Q 047519 564 ILPELQVLILRSNRFWGPIGDNTT---IVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNY 640 (892)
Q Consensus 564 ~l~~L~~L~L~~N~l~~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 640 (892)
.+++|++|++++|.+.+..+..+. ....++|++|++++|.+++.....+.
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~--------------------------- 334 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS--------------------------- 334 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH---------------------------
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH---------------------------
Confidence 667777777777766432211110 01235788888888887643211110
Q ss_pred cceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcC-----ccccccccccCCCCCCC----CcchhccCCCCC
Q 047519 641 YESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGK-----LNLLKGLNNISHNNLTG----DIPSLLRNLTEV 711 (892)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~-----l~~L~~L~~Ls~N~l~~----~ip~~l~~l~~L 711 (892)
.....++.|+.||+++|.+++..+..+.. .++|+.|+ +++|++++ .+|..+..+++|
T Consensus 335 -------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~-L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 335 -------------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW-LADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp -------------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE-CTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred -------------HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE-CCCCCCChhhHHHHHHHHHhCCCc
Confidence 01122567888888888887655555543 56888888 88888886 778888888889
Q ss_pred CeeeCCCCcCCCCCccc----c-CCCCCCCEEECCCCcCccc
Q 047519 712 ESLDLSSNMLVGHIPTQ----L-TSLKYLSVLNLSYNQFEGP 748 (892)
Q Consensus 712 ~~L~Ls~N~l~~~ip~~----l-~~l~~L~~L~ls~N~l~g~ 748 (892)
++|||++|++++..... + .....|+.|++.++.+...
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 99999999887542211 1 1234677888877776543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.4e-28 Score=268.19 Aligned_cols=281 Identities=19% Similarity=0.168 Sum_probs=229.4
Q ss_pred CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeec
Q 047519 411 SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNF 490 (892)
Q Consensus 411 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l 490 (892)
.++.....+.+++.++.+|..+. ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+.
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~---- 100 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRC--VNLQALVLTSNGINTIEEDSFSSLG---- 100 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCT----
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccC--CCCCEEECCCCccCccCHhhcCCCC----
Confidence 45555667888888888887554 589999999999987666677777 8999999999999888777777766
Q ss_pred CCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCC-ccccCCCCCcEEEccCC-CCCCCcchhccCCCCC
Q 047519 491 DSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP-LSLVNCHHLEVLDVGNN-QINDNFPNWLEILPEL 568 (892)
Q Consensus 491 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L 568 (892)
+|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|
T Consensus 101 ----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 101 ----SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp ----TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred ----CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 88999999999987666668899999999999999995443 47889999999999999 5776667788999999
Q ss_pred CEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEE
Q 047519 569 QVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI 648 (892)
Q Consensus 569 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (892)
++|++++|++++..|..+ ..+++|++|++++|+++ .+|..+
T Consensus 177 ~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~-~~~~~~------------------------------------ 217 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHI-LLLEIF------------------------------------ 217 (353)
T ss_dssp EEEEEEETTCCEECTTTT--TTCSEEEEEEEECSCST-THHHHH------------------------------------
T ss_pred CEEECCCCCcCccCHHHH--hccccCCeecCCCCccc-cchhhh------------------------------------
Confidence 999999999988878777 88899999999999985 334322
Q ss_pred ccchhhHHHhhhhheeeecCCCcCCCCChhhhc---CccccccccccCCCCCCC----CcchhccCCCCCCeeeCCCCcC
Q 047519 649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVG---KLNLLKGLNNISHNNLTG----DIPSLLRNLTEVESLDLSSNML 721 (892)
Q Consensus 649 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~---~l~~L~~L~~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l 721 (892)
...+++|+.|++++|++++..+..+. ....++.++ +++|.+++ .+|..++++++|+.|||++|++
T Consensus 218 -------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~-L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 218 -------VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT-FRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp -------HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE-EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred -------hhhcccccEEECCCCccccccccccccccccchhhccc-cccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 22267899999999999976655443 356677777 88888875 4788999999999999999999
Q ss_pred CCCCccc-cCCCCCCCEEECCCCcCcccCCC
Q 047519 722 VGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 722 ~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 751 (892)
+ .+|.. |..+++|++|++++|+++|.+|.
T Consensus 290 ~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 290 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred C-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 9 56665 68999999999999999998874
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-30 Score=307.89 Aligned_cols=458 Identities=14% Similarity=0.069 Sum_probs=241.4
Q ss_pred CCccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCC---CCCCCCcCc------------CC
Q 047519 50 DCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFN---YSEISSGFS------------QL 114 (892)
Q Consensus 50 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~~~------------~l 114 (892)
-|++|.++.+..+ .++ .+.. ......+. .+..+++|++|+|+++... +. +|..++ .+
T Consensus 40 vck~W~~~~~~~~-~~l---~~~~-~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~ 111 (592)
T 3ogk_B 40 VCRRWFKIDSETR-EHV---TMAL-CYTATPDR--LSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNL 111 (592)
T ss_dssp SCHHHHHHHHHHC-CEE---EESC-GGGSCHHH--HHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHC
T ss_pred HhHHHHHhhhccc-cEE---EEee-ccccChHH--HHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhC
Confidence 4568999965322 222 2222 11222222 4567889999999875421 11 343333 67
Q ss_pred CCCCeEeCCCCCCccccCCCCCcccC--CCCceecCCccc--CCcchhhhhhcccCCCCCCCEEecCCccCccccc----
Q 047519 115 RSLTLLNLSSSNFMGSIPASIDLINV--SRLSTNYLPIFA--FSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAE---- 186 (892)
Q Consensus 115 ~~L~~L~Ls~n~~~~~~p~~l~~~~L--~~L~~L~Ls~~~--~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~---- 186 (892)
++|++|+|++|.+++..+..++ .. .+|++|+++++. ....++..+. ++++|++|+|++|.+.+...
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~--~~~~~~L~~L~L~~~~~~~~~~l~~~~~----~~~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLA--KARADDLETLKLDKCSGFTTDGLLSIVT----HCRKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHH--HHHGGGCCEEEEESCEEEEHHHHHHHHH----HCTTCSEEECTTCEEECCCSHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHH--HhccccCcEEECcCCCCcCHHHHHHHHh----hCCCCCEEECccccccCcchhHHH
Confidence 8888888888877766555555 42 236777666533 1112233333 55666666666665543321
Q ss_pred cc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCccee
Q 047519 187 KE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTL 265 (892)
Q Consensus 187 ~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 265 (892)
.. ..+ ++|++|++++| .+++..+..+. ..+.++++|++|++++|.+.+
T Consensus 186 ~~~~~~--~~L~~L~L~~n--~~~~~~~~~l~------------~~~~~~~~L~~L~L~~~~~~~--------------- 234 (592)
T 3ogk_B 186 ELAQHN--TSLEVLNFYMT--EFAKISPKDLE------------TIARNCRSLVSVKVGDFEILE--------------- 234 (592)
T ss_dssp HHHHHC--CCCCEEECTTC--CCSSCCHHHHH------------HHHHHCTTCCEEECSSCBGGG---------------
T ss_pred HHHhcC--CCccEEEeecc--CCCccCHHHHH------------HHHhhCCCCcEEeccCccHHH---------------
Confidence 11 344 55555555555 44322111110 223344445555544442211
Q ss_pred cccceeecChhhhcCCCCCcEEEccCCCCC---cCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcC
Q 047519 266 GQSVNGYVDSDYIGDLDKRRSITGYVFNFA---GGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYA 342 (892)
Q Consensus 266 ~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~ 342 (892)
+|. .+..+++|++|+++.+... +..+. .+ ..+++|+
T Consensus 235 -------l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~--------------------------~l-------~~~~~L~ 273 (592)
T 3ogk_B 235 -------LVG-FFKAAANLEEFCGGSLNEDIGMPEKYM--------------------------NL-------VFPRKLC 273 (592)
T ss_dssp -------GHH-HHHHCTTCCEEEECBCCCCTTCTTSSS--------------------------CC-------CCCTTCC
T ss_pred -------HHH-HHhhhhHHHhhcccccccccchHHHHH--------------------------Hh-------hcccccc
Confidence 222 3444444555544432111 11222 33 4455555
Q ss_pred EEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEcc
Q 047519 343 EPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLS 421 (892)
Q Consensus 343 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~ 421 (892)
.|+++++.. +.+|..+..+++|++|++++|.+++......+..+++|++|+++++ ...+.++... .+++|++|+++
T Consensus 274 ~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 274 RLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp EEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEee
Confidence 555555422 2455555566666666666666553332233466666777766633 1122222222 45667777776
Q ss_pred C-----------CCCC--CcchhhhCCCCccEEEccCCCCCCCCchhhhh-hCCCcccEEEcc----CCCCCCCCCCCCC
Q 047519 422 A-----------CNIS--EFPDILRTLHQLQWFNLSKNRIHGRISSWMWD-LGITALYYLDLS----NNFLTNIEYFPPT 483 (892)
Q Consensus 422 ~-----------n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~~~L~~L~Ls----~n~l~~~~~~~~~ 483 (892)
+ +.++ .++.....+++|++|+++.|.+++..+..+.. + ++|+.|+++ .|.+++.+...
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~--~~L~~L~l~~~~~~n~l~~~p~~~-- 426 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL--KNLCDFRLVLLDREERITDLPLDN-- 426 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC--CSCCEEEEEECSCCSCCSSCCCHH--
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC--CCCcEEEEeecCCCccccCchHHH--
Confidence 2 4454 24444556788888888777777665555554 4 778888885 44555431100
Q ss_pred CCCeeecCCCCcccEEECCCCc--cCcccccccc-CCCCCCEEEccCCCCCC-CCCccccCCCCCcEEEccCCCCCCC-c
Q 047519 484 NMTQLNFDSNLTHKVLDMRMNN--FNGKISQKFV-NSCNLTNLNLNGNRLEG-PLPLSLVNCHHLEVLDVGNNQINDN-F 558 (892)
Q Consensus 484 ~l~~L~l~~~~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~-~ 558 (892)
.+.. .+.++++|+.|++++|. +++..+..+. .+++|++|++++|.+++ .++..+..+++|++|+|++|.+++. +
T Consensus 427 ~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 427 GVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 0000 01123366777775433 5544444443 36778888888888765 2344556778888888888887654 3
Q ss_pred chhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCC
Q 047519 559 PNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHN 602 (892)
Q Consensus 559 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 602 (892)
+..+..+++|++|++++|+++......+ ...++.+.+..+..+
T Consensus 506 ~~~~~~l~~L~~L~ls~n~it~~~~~~l-~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRASMTGQDLM-QMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBCCTTCTTGG-GGCCTTEEEEEECCC
T ss_pred HHHHHhcCccCeeECcCCcCCHHHHHHH-HHhCCCcEEEEecCc
Confidence 3334567888888888888765433222 134566666555544
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.5e-27 Score=254.65 Aligned_cols=252 Identities=25% Similarity=0.265 Sum_probs=203.2
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEc
Q 047519 342 AEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGL 420 (892)
Q Consensus 342 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L 420 (892)
+.++++++.++ .+|..+. ++|++|++++|.++ .++...|.++++|++|++++|.+...+..+... .+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 56777787777 5565443 68889999998887 455466788889999999988544333333333 6788888999
Q ss_pred cCCCCCCcchhhhCCCCccEEEccCCCCCCCCc-hhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEE
Q 047519 421 SACNISEFPDILRTLHQLQWFNLSKNRIHGRIS-SWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVL 499 (892)
Q Consensus 421 ~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L 499 (892)
++|.++.+|..+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+++..+..+..+. +|++|
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~--------~L~~L 155 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL--RNLIYLDISHTHTRVAFNGIFNGLS--------SLEVL 155 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTC--TTCCEEECTTSCCEECSTTTTTTCT--------TCCEE
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhc--cCCCEEECCCCcCCccchhhcccCc--------CCCEE
Confidence 888888888888889999999999999886554 456666 8999999999998888777766665 88999
Q ss_pred ECCCCccCc-cccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcC
Q 047519 500 DMRMNNFNG-KISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578 (892)
Q Consensus 500 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 578 (892)
++++|.+.+ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 999998887 5788888899999999999999887788888999999999999999887777788899999999999999
Q ss_pred CCCCCCCCCCcCCC-CccEEEcCCCCCcCcCC
Q 047519 579 WGPIGDNTTIVPFP-RFRIIDLSHNEFTGVLP 609 (892)
Q Consensus 579 ~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p 609 (892)
++..|..+ ..++ +|++|++++|++++..+
T Consensus 236 ~~~~~~~~--~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 236 MTSKKQEL--QHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CBCSSSSC--CCCCTTCCEEECTTCCEECSGG
T ss_pred cccCHHHH--HhhhccCCEEEccCCCeecccC
Confidence 88888766 6664 89999999999886544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=5e-27 Score=253.46 Aligned_cols=208 Identities=21% Similarity=0.235 Sum_probs=166.6
Q ss_pred cccEEECCCCccCc--cccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEE
Q 047519 495 THKVLDMRMNNFNG--KISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVL 571 (892)
Q Consensus 495 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L 571 (892)
+|++|++++|.++. ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|
T Consensus 53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence 44555555555442 23455666778888888888887 466678888888888888888877544 567788888888
Q ss_pred EccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcC-cCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEcc
Q 047519 572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG-VLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKG 650 (892)
Q Consensus 572 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (892)
++++|.+.+..+..+ ..+++|++|++++|.+++ .+|..+ .
T Consensus 132 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~-~------------------------------------ 172 (306)
T 2z66_A 132 DISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIF-T------------------------------------ 172 (306)
T ss_dssp ECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSCC-T------------------------------------
T ss_pred ECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhHH-h------------------------------------
Confidence 888888877777666 778889999999998876 344332 1
Q ss_pred chhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccC
Q 047519 651 IDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLT 730 (892)
Q Consensus 651 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 730 (892)
.+++|+.|++++|++++..|..+..+++|+.|+ +++|++++..+..+..+++|+.|||++|++++..|..+.
T Consensus 173 -------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 173 -------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN-MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp -------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred -------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE-CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 166788999999999988888999999999998 999999988888899999999999999999999999999
Q ss_pred CCC-CCCEEECCCCcCcccCC
Q 047519 731 SLK-YLSVLNLSYNQFEGPIP 750 (892)
Q Consensus 731 ~l~-~L~~L~ls~N~l~g~iP 750 (892)
.++ +|++|++++|++++..+
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGG
T ss_pred hhhccCCEEEccCCCeecccC
Confidence 984 99999999999997654
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.5e-26 Score=259.29 Aligned_cols=232 Identities=21% Similarity=0.194 Sum_probs=174.3
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH 542 (892)
Q Consensus 463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 542 (892)
+++.|++++|++++..+..+..+. +|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~--------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLH--------HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCT--------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CccEEECcCCcCceECHHHcCCCC--------CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 444444444444444444444443 555666666666655566677777777777777777766566677778
Q ss_pred CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcc
Q 047519 543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG 622 (892)
Q Consensus 543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l 622 (892)
+|++|+|++|+++...+..|..+++|+.|++++|...+.++.. .+..+++|++|++++|++++. |. +.
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~-~~--~~-------- 215 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKDM-PN--LT-------- 215 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSSC-CC--CT--------
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCccccc-cc--cc--------
Confidence 8888888888877765667777888888888875544444442 136788888888888888743 32 11
Q ss_pred cCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcc
Q 047519 623 NNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP 702 (892)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip 702 (892)
.+++|+.|+|++|++++..|..|.++++|+.|+ +++|++++..|
T Consensus 216 -----------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~ 259 (452)
T 3zyi_A 216 -----------------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW-VMNSQVSLIER 259 (452)
T ss_dssp -----------------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE-CTTSCCCEECT
T ss_pred -----------------------------------ccccccEEECcCCcCcccCcccccCccCCCEEE-eCCCcCceECH
Confidence 156788999999999988899999999999998 99999999889
Q ss_pred hhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519 703 SLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750 (892)
Q Consensus 703 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 750 (892)
..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+...
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 999999999999999999998888889999999999999999987654
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.4e-26 Score=245.41 Aligned_cols=210 Identities=20% Similarity=0.162 Sum_probs=151.8
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCC-CCCCcchhccCCCCCCEEEc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQ-INDNFPNWLEILPELQVLIL 573 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L 573 (892)
++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+ +....|..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 55666666666666555666677777777777777776666677777777777777776 66655667777777777777
Q ss_pred cCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchh
Q 047519 574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI 653 (892)
Q Consensus 574 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (892)
++|.+++..+..+ ..+++|++|++++|++++..+.. +..
T Consensus 113 ~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~-------------------------------------- 151 (285)
T 1ozn_A 113 DRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDDT-FRD-------------------------------------- 151 (285)
T ss_dssp TTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT--------------------------------------
T ss_pred CCCcCCEECHhHh--hCCcCCCEEECCCCcccccCHhH-hcc--------------------------------------
Confidence 7777766666555 66777777777777776443322 111
Q ss_pred hHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519 654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK 733 (892)
Q Consensus 654 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 733 (892)
+++|+.|++++|++++..+..+..+++|+.|+ +++|++++..|..|+++++|+.|+|++|++++..+..+..++
T Consensus 152 -----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 152 -----LGNLTHLFLHGNRISSVPERAFRGLHSLDRLL-LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp -----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred -----CCCccEEECCCCcccccCHHHhcCccccCEEE-CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 55677788888877765556677888888887 888888877788888888888888888888876667788888
Q ss_pred CCCEEECCCCcCcccCCC
Q 047519 734 YLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 734 ~L~~L~ls~N~l~g~iP~ 751 (892)
+|+.|++++|++++..+.
T Consensus 226 ~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TCCEEECCSSCEECSGGG
T ss_pred ccCEEeccCCCccCCCCc
Confidence 888888888888876654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=8.6e-26 Score=256.75 Aligned_cols=233 Identities=21% Similarity=0.205 Sum_probs=186.9
Q ss_pred CcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCC
Q 047519 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541 (892)
Q Consensus 462 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 541 (892)
++++.|++++|++++..+..+..+. +|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~--------~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLR--------HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCS--------SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCC--------CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 4455555555555555555554444 66777777777776667778888888888888888886666678888
Q ss_pred CCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhc
Q 047519 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH 621 (892)
Q Consensus 542 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~ 621 (892)
++|++|+|++|+++...+..|..+++|++|++++|...+.++.. .+..+++|++|++++|+++ .+|. +.
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~-~~~~--~~------- 204 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR-EIPN--LT------- 204 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS-SCCC--CT-------
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc-cccc--cC-------
Confidence 89999999999888866777888899999999886555555542 1378889999999999887 3442 11
Q ss_pred ccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCc
Q 047519 622 GNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI 701 (892)
Q Consensus 622 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~i 701 (892)
.+++|+.|||++|++++..|..|.++++|+.|+ |++|++++..
T Consensus 205 ------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~ 247 (440)
T 3zyj_A 205 ------------------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW-MIQSQIQVIE 247 (440)
T ss_dssp ------------------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTCCCCEEC
T ss_pred ------------------------------------CCcccCEEECCCCccCccChhhhccCccCCEEE-CCCCceeEEC
Confidence 156789999999999988899999999999998 9999999999
Q ss_pred chhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519 702 PSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750 (892)
Q Consensus 702 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 750 (892)
|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+...
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999999999999999998888889999999999999999986543
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.9e-29 Score=296.25 Aligned_cols=433 Identities=12% Similarity=0.018 Sum_probs=275.4
Q ss_pred cccccCCCCCEEEcccCCCC---CcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCC-
Q 047519 230 KDLGEAKKILGMEICRNRTC---GKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTL- 305 (892)
Q Consensus 230 ~~l~~l~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l- 305 (892)
..+..+++|++|++++|... +.+|...+.. ....++. ....+++|++|+|++|.+++..+.+++..
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~---------~~~~l~~-l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 136 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGY---------VTPWVTE-ISNNLRQLKSVHFRRMIVSDLDLDRLAKAR 136 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCB---------CHHHHHH-HHHHCTTCCEEEEESCBCCHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEecCCcchhhccccccccccc---------chHHHHH-HHhhCCCCCeEEeeccEecHHHHHHHHHhc
Confidence 45567889999999887431 2222222110 0001111 23378889999999888877666666553
Q ss_pred C-CCcEEecCcccccccee--ecc-chhhhhhccCCCCCcCEEEccCCcCCcC----CCccccCCCCCCEEECcCCcCCC
Q 047519 306 Q-STVVLSTTEAEYMAITK--AVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGS----IPSSVYELENLILLRLPSNRLSG 377 (892)
Q Consensus 306 ~-~L~~L~l~~~~~n~l~~--~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 377 (892)
+ +|++|+++ +|.... .++ .. .++++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 137 ~~~L~~L~L~---~~~~~~~~~l~~~~-------~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~ 206 (592)
T 3ogk_B 137 ADDLETLKLD---KCSGFTTDGLLSIV-------THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK 206 (592)
T ss_dssp GGGCCEEEEE---SCEEEEHHHHHHHH-------HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSS
T ss_pred cccCcEEECc---CCCCcCHHHHHHHH-------hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCc
Confidence 3 48999988 665211 111 22 4678889999998887765 33345577888889998888862
Q ss_pred ----ccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCC----CcchhhhCCCCccEEEccCCCC
Q 047519 378 ----TTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNIS----EFPDILRTLHQLQWFNLSKNRI 448 (892)
Q Consensus 378 ----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~----~lp~~l~~l~~L~~L~Ls~n~l 448 (892)
.++ ..+.++++|++|++++| .+.+ ++... .+++|++|+++.+... ..+..+..+++|+.|+++++..
T Consensus 207 ~~~~~l~-~~~~~~~~L~~L~L~~~--~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 207 ISPKDLE-TIARNCRSLVSVKVGDF--EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282 (592)
T ss_dssp CCHHHHH-HHHHHCTTCCEEECSSC--BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT
T ss_pred cCHHHHH-HHHhhCCCCcEEeccCc--cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch
Confidence 223 34567888888888888 4444 33333 6788888888754322 3334567778888888887543
Q ss_pred CCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCc-cccccccCCCCCCEEEccC
Q 047519 449 HGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KISQKFVNSCNLTNLNLNG 527 (892)
Q Consensus 449 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~ 527 (892)
+.+|..+..+ ++|++|++++|.+++..... .+..+++|++|+++ +.+.+ .++..+..+++|++|++++
T Consensus 283 -~~l~~~~~~~--~~L~~L~Ls~~~l~~~~~~~-------~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 283 -NEMPILFPFA--AQIRKLDLLYALLETEDHCT-------LIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp -TTGGGGGGGG--GGCCEEEETTCCCCHHHHHH-------HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred -hHHHHHHhhc--CCCcEEecCCCcCCHHHHHH-------HHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence 3566666666 88888888888765432210 02233477777777 33333 3344445678888888883
Q ss_pred -----------CCCCCC-CCccccCCCCCcEEEccCCCCCCCcchhccC-CCCCCEEEcc----CCcCCCC-----CCCC
Q 047519 528 -----------NRLEGP-LPLSLVNCHHLEVLDVGNNQINDNFPNWLEI-LPELQVLILR----SNRFWGP-----IGDN 585 (892)
Q Consensus 528 -----------n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~ 585 (892)
|.+++. ++.....+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++. ++..
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 455532 2222445788888888888887766666654 7888888886 5566542 1111
Q ss_pred CCCcCCCCccEEEcCCCC--CcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhhe
Q 047519 586 TTIVPFPRFRIIDLSHNE--FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFM 663 (892)
Q Consensus 586 ~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 663 (892)
+ ..+++|+.|++++|. +++..+.. ....+++|+
T Consensus 432 ~--~~~~~L~~L~L~~~~~~l~~~~~~~-------------------------------------------~~~~~~~L~ 466 (592)
T 3ogk_B 432 L--IGCKKLRRFAFYLRQGGLTDLGLSY-------------------------------------------IGQYSPNVR 466 (592)
T ss_dssp H--HHCTTCCEEEEECCGGGCCHHHHHH-------------------------------------------HHHSCTTCC
T ss_pred H--HhCCCCCEEEEecCCCCccHHHHHH-------------------------------------------HHHhCccce
Confidence 2 457788888887543 44222111 111256788
Q ss_pred eeecCCCcCCC-CChhhhcCccccccccccCCCCCCCC-cchhccCCCCCCeeeCCCCcCCCCCcccc-CCCCCCCEEEC
Q 047519 664 TIDLSSNKFQG-GIPEVVGKLNLLKGLNNISHNNLTGD-IPSLLRNLTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNL 740 (892)
Q Consensus 664 ~LdLs~N~l~~-~~p~~~~~l~~L~~L~~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~l 740 (892)
.|++++|++++ .++..+.++++|+.|+ +++|++++. ++..+..+++|+.|+|++|+++......+ ..++.+....+
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~-l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCPNLQKLE-MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCTTCCEEE-EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred EeeccCCCCCHHHHHHHHhcCcccCeee-ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence 88888888875 3455667888888898 999888754 44555678889999999998886543333 34666666655
Q ss_pred CCC
Q 047519 741 SYN 743 (892)
Q Consensus 741 s~N 743 (892)
..+
T Consensus 546 ~~~ 548 (592)
T 3ogk_B 546 PSR 548 (592)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.3e-26 Score=250.19 Aligned_cols=201 Identities=17% Similarity=0.236 Sum_probs=146.2
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc---------CC
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE---------IL 565 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~---------~l 565 (892)
+|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+. ++
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 4444444444444 44555566666666666666666 5566666666666666666666666665544 37
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEE
Q 047519 566 PELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESII 645 (892)
Q Consensus 566 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (892)
++|++|++++|+++ .+|..+ ..+++|++|++++|++++ +|..+ .
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~~-l~~~l-~------------------------------- 226 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLSA-LGPAI-H------------------------------- 226 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCCC-CCGGG-G-------------------------------
T ss_pred CCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCCc-Cchhh-c-------------------------------
Confidence 78888888888776 566554 677788888888888874 44332 1
Q ss_pred EEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCC
Q 047519 646 LTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHI 725 (892)
Q Consensus 646 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 725 (892)
.+++|+.|++++|++.+.+|..++++++|+.|+ +++|++.+.+|..++++++|+.|+|++|++.+.+
T Consensus 227 ------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~-L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 227 ------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI-LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp ------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE-CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred ------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE-CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 156788888888888888888888888888888 8888888888888888888888888888888888
Q ss_pred ccccCCCCCCCEEECCCCcCc
Q 047519 726 PTQLTSLKYLSVLNLSYNQFE 746 (892)
Q Consensus 726 p~~l~~l~~L~~L~ls~N~l~ 746 (892)
|..+..+++|+.+++..|.+.
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSC
T ss_pred cHHHhhccCceEEeCCHHHHH
Confidence 888888888888888877664
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=5.9e-26 Score=242.29 Aligned_cols=234 Identities=19% Similarity=0.175 Sum_probs=155.1
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCC
Q 047519 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNC 541 (892)
Q Consensus 463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l 541 (892)
+|++|++++|.+++..+..+..+. +|++|++++|.+++..|..|..+++|++|++++|. +.+..|..+..+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~--------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACR--------NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCT--------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CceEEEeeCCcCCccCHHHcccCC--------CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 344444444444444333333333 55555555555555555666666777777777775 665556667777
Q ss_pred CCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhc
Q 047519 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH 621 (892)
Q Consensus 542 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~ 621 (892)
++|++|++++|++++..|..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++..+.. +..
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~------ 175 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERA-FRG------ 175 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTT-TTT------
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCHHH-hcC------
Confidence 777777777777777666677777777777777777766555444 66777778888877777433322 111
Q ss_pred ccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCc
Q 047519 622 GNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI 701 (892)
Q Consensus 622 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~i 701 (892)
+++|+.|++++|++++..|..+.++++|+.|+ +++|++++..
T Consensus 176 -------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~ 217 (285)
T 1ozn_A 176 -------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY-LFANNLSALP 217 (285)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCSCCC
T ss_pred -------------------------------------ccccCEEECCCCcccccCHhHccCcccccEee-CCCCcCCcCC
Confidence 56677888888888877788888888888887 8888888777
Q ss_pred chhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC
Q 047519 702 PSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752 (892)
Q Consensus 702 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 752 (892)
|..+..+++|+.|+|++|.+....+.. .-...++.+..+.|.+.+..|..
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 777888888888888888887654421 11123445557788888888864
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=253.96 Aligned_cols=252 Identities=17% Similarity=0.159 Sum_probs=215.2
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH 542 (892)
Q Consensus 463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 542 (892)
....++.+++.++.++..... +++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~-----------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIST-----------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCT-----------TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred CCCEEEeCCCCcCcCCCCCCC-----------CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 355677777777765443222 778999999999988889999999999999999999988888999999
Q ss_pred CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcc
Q 047519 543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG 622 (892)
Q Consensus 543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l 622 (892)
+|++|+|++|++++..+..|..+++|++|++++|++.+..+..+ ..+++|++|++++|+..+.+|...+.+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~------- 183 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG------- 183 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT-------
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc-------
Confidence 99999999999998777789999999999999999987666555 889999999999976655666443321
Q ss_pred cCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcc
Q 047519 623 NNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP 702 (892)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip 702 (892)
+++|+.|+|++|+++ .+| .+..+++|+.|+ |++|++++..|
T Consensus 184 ------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~-Ls~N~l~~~~~ 224 (440)
T 3zyj_A 184 ------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD-LSGNHLSAIRP 224 (440)
T ss_dssp ------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEE-CTTSCCCEECT
T ss_pred ------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEE-CCCCccCccCh
Confidence 678999999999999 566 488999999999 99999999889
Q ss_pred hhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 047519 703 SLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG-SQFNTFRNDSYVGNSGLCGFP 773 (892)
Q Consensus 703 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~ 773 (892)
..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|.. ..+..+....+.+||+.|+|.
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99999999999999999999999999999999999999999999655543 345667778899999999874
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1e-24 Score=255.16 Aligned_cols=262 Identities=23% Similarity=0.235 Sum_probs=138.2
Q ss_pred CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEc
Q 047519 364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNL 443 (892)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 443 (892)
+++.|++++|.++ .+| ..+. ++|++|++++|.+ . .+|. .+++|++|++++|+++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp-~~l~--~~L~~L~L~~N~l--~-~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLP-DCLP--AHITTLVIPDNNL--T-SLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCC-SCCC--TTCSEEEECSCCC--S-CCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccC-hhhC--CCCcEEEecCCCC--C-CCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 5778888888877 555 2332 6777777777733 2 2222 45666777777776666665 4566666666
Q ss_pred cCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEE
Q 047519 444 SKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNL 523 (892)
Q Consensus 444 s~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 523 (892)
++|.+++. |. .+ ++|+.|++++|+++++++ . +++|++|
T Consensus 109 s~N~l~~l-~~---~l--~~L~~L~L~~N~l~~lp~---------------------------------~---l~~L~~L 146 (622)
T 3g06_A 109 FSNPLTHL-PA---LP--SGLCKLWIFGNQLTSLPV---------------------------------L---PPGLQEL 146 (622)
T ss_dssp CSCCCCCC-CC---CC--TTCCEEECCSSCCSCCCC---------------------------------C---CTTCCEE
T ss_pred cCCcCCCC-CC---CC--CCcCEEECCCCCCCcCCC---------------------------------C---CCCCCEE
Confidence 66666642 22 12 556666666666554322 1 1344444
Q ss_pred EccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCC
Q 047519 524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE 603 (892)
Q Consensus 524 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 603 (892)
++++|++++ +|. .+++|+.|++++|++++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.
T Consensus 147 ~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 147 SVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNR 212 (622)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSC
T ss_pred ECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCc
Confidence 444444442 222 12344455555555444 23 233445555555555443 221 12445555555555
Q ss_pred CcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCc
Q 047519 604 FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL 683 (892)
Q Consensus 604 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l 683 (892)
++ .+|.. +++|+.|++++|+|++ +| ..+
T Consensus 213 l~-~l~~~-----------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 213 LT-SLPAL-----------------------------------------------PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CS-SCCCC-----------------------------------------------CTTCCEEECCSSCCSC-CC---CCC
T ss_pred cc-ccCCC-----------------------------------------------CCCCCEEEccCCccCc-CC---CCC
Confidence 54 22211 2345555555555553 33 334
Q ss_pred cccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519 684 NLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 684 ~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 751 (892)
++|+.|+ +++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++|.+|.
T Consensus 241 ~~L~~L~-Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 241 SELKELM-VSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TTCCEEE-CCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcCcEEE-CCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 5555555 6666665 3443 3455666666666665 5555566666666666666666655553
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3e-26 Score=252.69 Aligned_cols=278 Identities=17% Similarity=0.168 Sum_probs=228.8
Q ss_pred CCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccc
Q 047519 434 TLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK 513 (892)
Q Consensus 434 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~ 513 (892)
.++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+..+. +|++|++++|.+++..|..
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~--------~L~~L~L~~n~l~~~~~~~ 95 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT----EAVKSLDLSNNRITYISNSDLQRCV--------NLQALVLTSNGINTIEEDS 95 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC----TTCCEEECTTSCCCEECTTTTTTCT--------TCCEEECTTSCCCEECTTT
T ss_pred CCCCCeEeeCCCCCcc-ccccccc----ccCcEEECCCCcCcccCHHHhccCC--------CCCEEECCCCccCccCHhh
Confidence 3556667899999998 5666543 6899999999999988777777766 9999999999999888888
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEEEccCCc-CCCCCCCCCCCcCC
Q 047519 514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVLILRSNR-FWGPIGDNTTIVPF 591 (892)
Q Consensus 514 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l 591 (892)
|..+++|++|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +.+..+..+ ..+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l 173 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGL 173 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTC
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCC
Confidence 9999999999999999996655568999999999999999987444 478899999999999995 555545555 889
Q ss_pred CCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCc
Q 047519 592 PRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNK 671 (892)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 671 (892)
++|++|++++|++++..|..+ .+ +++|+.|++++|+
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l-~~-------------------------------------------l~~L~~L~l~~n~ 209 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSL-KS-------------------------------------------IQNVSHLILHMKQ 209 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTT-TT-------------------------------------------CSEEEEEEEECSC
T ss_pred CCCCEEECCCCCcCccCHHHH-hc-------------------------------------------cccCCeecCCCCc
Confidence 999999999999997766543 11 6789999999999
Q ss_pred CCCCChhh-hcCccccccccccCCCCCCCCcchhcc---CCCCCCeeeCCCCcCCC----CCccccCCCCCCCEEECCCC
Q 047519 672 FQGGIPEV-VGKLNLLKGLNNISHNNLTGDIPSLLR---NLTEVESLDLSSNMLVG----HIPTQLTSLKYLSVLNLSYN 743 (892)
Q Consensus 672 l~~~~p~~-~~~l~~L~~L~~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N 743 (892)
++ .+|.. +..+++|+.|+ +++|++++..+..+. ..+.++.++|++|.+++ .+|..+..+++|+.|++++|
T Consensus 210 l~-~~~~~~~~~~~~L~~L~-L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 210 HI-LLLEIFVDVTSSVECLE-LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp ST-THHHHHHHHTTTEEEEE-EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred cc-cchhhhhhhcccccEEE-CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 97 55554 55689999998 999999987665543 46778899999999886 47888999999999999999
Q ss_pred cCcccCCCC--CCCCcccCCccCCCCCCCCCC
Q 047519 744 QFEGPIPQG--SQFNTFRNDSYVGNSGLCGFP 773 (892)
Q Consensus 744 ~l~g~iP~~--~~~~~~~~~~~~gN~~lc~~~ 773 (892)
+++ .+|.. ..+..+....+.+|+..|.+|
T Consensus 288 ~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 288 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999 67764 356677788889999888764
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.2e-25 Score=254.32 Aligned_cols=252 Identities=17% Similarity=0.131 Sum_probs=214.7
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCC
Q 047519 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHH 543 (892)
Q Consensus 464 L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 543 (892)
...++.+++.++.++.. ++ +++++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~----------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IP----------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CC----------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CcEEEECCCCcCccCCC-CC----------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 45677777777765432 22 27889999999999988999999999999999999999888889999999
Q ss_pred CcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhccc
Q 047519 544 LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGN 623 (892)
Q Consensus 544 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~ 623 (892)
|++|+|++|++++..+..|..+++|++|+|++|++.+..+..+ ..+++|++|++++|+..+.+|...+.+
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-------- 194 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG-------- 194 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------
Confidence 9999999999999777889999999999999999986655555 889999999999966655666443221
Q ss_pred CCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcch
Q 047519 624 NNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPS 703 (892)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~ 703 (892)
+++|+.|+|++|++++ +| .+..+++|+.|+ |++|++++..|.
T Consensus 195 -----------------------------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~-Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 195 -----------------------------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE-MSGNHFPEIRPG 236 (452)
T ss_dssp -----------------------------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEE-CTTSCCSEECGG
T ss_pred -----------------------------------CCCCCEEECCCCcccc-cc-cccccccccEEE-CcCCcCcccCcc
Confidence 6789999999999995 45 588999999999 999999999999
Q ss_pred hccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCCC
Q 047519 704 LLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG-SQFNTFRNDSYVGNSGLCGFPL 774 (892)
Q Consensus 704 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~~ 774 (892)
.|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|.. ..+..+....+.+||+-|++.+
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999999999999999999999999999999999999999655543 2455677788999999998753
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.4e-28 Score=260.42 Aligned_cols=205 Identities=20% Similarity=0.221 Sum_probs=149.2
Q ss_pred cccEEECCCCccCccccccc--cCCCCCCEEEccCCCCCCCCCccccCC-----CCCcEEEccCCCCCCCcchhccCCCC
Q 047519 495 THKVLDMRMNNFNGKISQKF--VNSCNLTNLNLNGNRLEGPLPLSLVNC-----HHLEVLDVGNNQINDNFPNWLEILPE 567 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~ 567 (892)
+|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..|+.+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 45555555555555555554 6677777777777777765 6666655 77888888888887776677778888
Q ss_pred CCEEEccCCcCCCCC--CCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEE
Q 047519 568 LQVLILRSNRFWGPI--GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESII 645 (892)
Q Consensus 568 L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (892)
|++|++++|++.+.+ +....+..+++|++|++++|++++. |..
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~---------------------------------- 219 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGV---------------------------------- 219 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HHH----------------------------------
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HHH----------------------------------
Confidence 888888888776542 2222236678888888888888732 110
Q ss_pred EEEccchhhHHHhhhhheeeecCCCcCCCCCh-hhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC
Q 047519 646 LTIKGIDIQIERILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH 724 (892)
Q Consensus 646 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 724 (892)
....+..+++|+.||+++|++++.+| ..+..+++|++|+ |++|+|+ .+|..+. ++|+.|||++|+|++.
T Consensus 220 ------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~-Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 220 ------CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN-LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp ------HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE-CTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred ------HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE-CCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence 01112225788899999999988775 4566788999998 9999998 7787776 8899999999999866
Q ss_pred CccccCCCCCCCEEECCCCcCcc
Q 047519 725 IPTQLTSLKYLSVLNLSYNQFEG 747 (892)
Q Consensus 725 ip~~l~~l~~L~~L~ls~N~l~g 747 (892)
|. +..+++|++|++++|++++
T Consensus 290 -p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 290 -PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -CC-TTTSCEEEEEECTTCTTTC
T ss_pred -hh-HhhCCCCCEEeccCCCCCC
Confidence 66 8899999999999999985
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.6e-25 Score=256.67 Aligned_cols=269 Identities=22% Similarity=0.279 Sum_probs=176.9
Q ss_pred CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEE
Q 047519 339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGL 418 (892)
Q Consensus 339 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 418 (892)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+| . .+++|++|+|++|++ .. +|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp-~---~l~~L~~L~Ls~N~l--~~-lp~--~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP-A---LPPELRTLEVSGNQL--TS-LPV--LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCC-C---CCTTCCEEEECSCCC--SC-CCC--CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCC-C---cCCCCCEEEcCCCcC--Cc-CCC--CCCCCCEE
Confidence 46899999999999 7787775 89999999999998 566 2 679999999999954 32 443 68999999
Q ss_pred EccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccE
Q 047519 419 GLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKV 498 (892)
Q Consensus 419 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~ 498 (892)
++++|.++.+|. .+++|+.|++++|++++ +|.. + ++|++|++++|++++... .+ .+|+.
T Consensus 107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l--~~L~~L~Ls~N~l~~l~~-~~-----------~~L~~ 165 (622)
T 3g06_A 107 SIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---P--PGLQELSVSDNQLASLPA-LP-----------SELCK 165 (622)
T ss_dssp EECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---C--TTCCEEECCSSCCSCCCC-CC-----------TTCCE
T ss_pred ECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---C--CCCCEEECcCCcCCCcCC-cc-----------CCCCE
Confidence 999999999987 67899999999999985 5543 2 789999999988876432 11 14455
Q ss_pred EECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcC
Q 047519 499 LDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578 (892)
Q Consensus 499 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 578 (892)
|++++|.+++ +| ..+++|+.|++++|.++ + +|. .+++|+.|++++|.+
T Consensus 166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~------------------------~-l~~---~~~~L~~L~L~~N~l 213 (622)
T 3g06_A 166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLA------------------------S-LPT---LPSELYKLWAYNNRL 213 (622)
T ss_dssp EECCSSCCSC-CC---CCCTTCCEEECCSSCCS------------------------C-CCC---CCTTCCEEECCSSCC
T ss_pred EECCCCCCCC-Cc---ccCCCCcEEECCCCCCC------------------------C-CCC---ccchhhEEECcCCcc
Confidence 5555555553 22 22344455555555444 3 222 124455555555554
Q ss_pred CCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHh
Q 047519 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERI 658 (892)
Q Consensus 579 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (892)
+. +|. .+++|+.|++++|++++ +|..
T Consensus 214 ~~-l~~-----~~~~L~~L~Ls~N~L~~-lp~~----------------------------------------------- 239 (622)
T 3g06_A 214 TS-LPA-----LPSGLKELIVSGNRLTS-LPVL----------------------------------------------- 239 (622)
T ss_dssp SS-CCC-----CCTTCCEEECCSSCCSC-CCCC-----------------------------------------------
T ss_pred cc-cCC-----CCCCCCEEEccCCccCc-CCCC-----------------------------------------------
Confidence 32 221 12455666666665553 3311
Q ss_pred hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK 733 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 733 (892)
+++|+.|+|++|+|+ .+|. .+++|+.|+ |++|+|+ .+|..|.++++|+.|+|++|.+++.+|..+..++
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~-Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLS-VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEE-CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEe-CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 344566666666666 3444 455666666 7777666 5566666777777777777777666666555443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-27 Score=257.91 Aligned_cols=267 Identities=16% Similarity=0.109 Sum_probs=171.9
Q ss_pred ccEEEccCCCCCCcc-hhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCC
Q 047519 415 LFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN 493 (892)
Q Consensus 415 L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~ 493 (892)
++..+++.+.+...+ ..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.+++..+ +..+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~--~~~l-------- 79 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESL-------- 79 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC--TTCCEEECTTSCCEEEEE--ETTC--------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC--CcCCEEECCCCcCCcchh--hhhc--------
Confidence 344455555554333 344556678888888888887777777776 778888888877766543 3333
Q ss_pred CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519 494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573 (892)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 573 (892)
++|++|++++|.+++.. ..++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|++
T Consensus 80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 36777777777766432 235777777777777654332 3466777777777777765666666777777777
Q ss_pred cCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchh
Q 047519 574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI 653 (892)
Q Consensus 574 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (892)
++|.+++..+..+ ...+++|++|++++|.+++. |...
T Consensus 152 s~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~-~~~~----------------------------------------- 188 (317)
T 3o53_A 152 KLNEIDTVNFAEL-AASSDTLEHLNLQYNFIYDV-KGQV----------------------------------------- 188 (317)
T ss_dssp TTSCCCEEEGGGG-GGGTTTCCEEECTTSCCCEE-ECCC-----------------------------------------
T ss_pred CCCCCCcccHHHH-hhccCcCCEEECCCCcCccc-cccc-----------------------------------------
Confidence 7777765544433 12456777777777776643 2110
Q ss_pred hHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCC-CCCccccCCC
Q 047519 654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLV-GHIPTQLTSL 732 (892)
Q Consensus 654 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l 732 (892)
.+++|+.|+|++|++++ +|..+..+++|+.|+ +++|+++ .+|..+..+++|+.|+|++|+++ +.+|..+..+
T Consensus 189 ----~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~-L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 189 ----VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS-LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp ----CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE-CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred ----ccccCCEEECCCCcCCc-chhhhcccCcccEEE-CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 04567777777777773 444477777777776 7777777 46666777777777777777777 6666777777
Q ss_pred CCCCEEECC-CCcCcccCCC
Q 047519 733 KYLSVLNLS-YNQFEGPIPQ 751 (892)
Q Consensus 733 ~~L~~L~ls-~N~l~g~iP~ 751 (892)
+.|+.++++ .+.++|..|.
T Consensus 262 ~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSSC
T ss_pred ccceEEECCCchhccCCchh
Confidence 777777777 4455555443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.1e-27 Score=253.21 Aligned_cols=248 Identities=20% Similarity=0.196 Sum_probs=179.5
Q ss_pred CCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCC-CCCchhhh-------hhCCCcccEEEccCCCCCCCCCCCC--
Q 047519 413 PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH-GRISSWMW-------DLGITALYYLDLSNNFLTNIEYFPP-- 482 (892)
Q Consensus 413 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~~~L~~L~Ls~n~l~~~~~~~~-- 482 (892)
++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. .+ ++|++|++++|.+++..|..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI--SGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT--SCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc--CCccEEEccCCcccchhHHHHHH
Confidence 3455555555555 555544433 667777777763 34454443 34 777777777777776666544
Q ss_pred CCCCeeecCCCCcccEEECCCCccCccccccccCC-----CCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCC
Q 047519 483 TNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS-----CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDN 557 (892)
Q Consensus 483 ~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 557 (892)
..+. +|++|++++|.+++. |..+..+ ++|++|++++|++++..|..+..+++|++|++++|++.+.
T Consensus 118 ~~l~--------~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 118 ATGP--------DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCSC--------CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hcCC--------CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 4444 777888888887766 6666655 7899999999999887778888899999999999988764
Q ss_pred --cchhc--cCCCCCCEEEccCCcCCCC--CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccc
Q 047519 558 --FPNWL--EILPELQVLILRSNRFWGP--IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY 631 (892)
Q Consensus 558 --~p~~~--~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~ 631 (892)
.|..+ ..+++|++|++++|++++. ++... +..+++|++|++++|++++..|...+..
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------------- 251 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSHNSLRDAAGAPSCDW---------------- 251 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTTSCCCSSCCCSCCCC----------------
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCCCcCCcccchhhhhh----------------
Confidence 23444 7888999999999988632 11111 1456889999999999987765332110
Q ss_pred cCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCC
Q 047519 632 MTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEV 711 (892)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L 711 (892)
+++|+.|+|++|+|+ .+|..+. ++|+.|+ |++|+|++. |. +..+++|
T Consensus 252 ---------------------------l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~-Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 252 ---------------------------PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLD-LSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp ---------------------------CTTCCEEECTTSCCS-SCCSSCC--SEEEEEE-CCSSCCCSC-CC-TTTSCEE
T ss_pred ---------------------------cCCCCEEECCCCccC-hhhhhcc--CCceEEE-CCCCCCCCC-hh-HhhCCCC
Confidence 567889999999998 7888776 8899998 999999966 66 8999999
Q ss_pred CeeeCCCCcCCCC
Q 047519 712 ESLDLSSNMLVGH 724 (892)
Q Consensus 712 ~~L~Ls~N~l~~~ 724 (892)
+.|+|++|++++.
T Consensus 299 ~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 299 GNLSLKGNPFLDS 311 (312)
T ss_dssp EEEECTTCTTTCC
T ss_pred CEEeccCCCCCCC
Confidence 9999999999853
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9e-26 Score=258.95 Aligned_cols=226 Identities=20% Similarity=0.151 Sum_probs=114.7
Q ss_pred CcchhhhCCC----CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECC
Q 047519 427 EFPDILRTLH----QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMR 502 (892)
Q Consensus 427 ~lp~~l~~l~----~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~ 502 (892)
.+|..+..+. +|++|+|++|.+++..|..+..+ ++|++|++++|.+++..| +..+. +|++|+++
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~--l~~l~--------~L~~L~Ls 88 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLS--------TLRTLDLN 88 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEE--CTTCT--------TCCEEECC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcc--cccCC--------CCCEEEec
Confidence 4555554443 67777777777776666666665 666666666666665433 22222 55555555
Q ss_pred CCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCC
Q 047519 503 MNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 582 (892)
Q Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 582 (892)
+|.+++..+ .++|++|++++|.+++..+. .+++|++|++++|.+++..|..+..
T Consensus 89 ~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------ 142 (487)
T 3oja_A 89 NNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------ 142 (487)
T ss_dssp SSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG------------------
T ss_pred CCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC------------------
Confidence 555543221 14455555555555433222 2344444444444444444444444
Q ss_pred CCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhh
Q 047519 583 GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIF 662 (892)
Q Consensus 583 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 662 (892)
+++|++|++++|.+++.+|..+... ++.|
T Consensus 143 --------l~~L~~L~Ls~N~l~~~~~~~l~~~-------------------------------------------l~~L 171 (487)
T 3oja_A 143 --------RSRVQYLDLKLNEIDTVNFAELAAS-------------------------------------------SDTL 171 (487)
T ss_dssp --------GSSEEEEECTTSCCCEEEGGGGGGG-------------------------------------------TTTC
T ss_pred --------CCCCCEEECCCCCCCCcChHHHhhh-------------------------------------------CCcc
Confidence 4445555555555544433322111 3344
Q ss_pred eeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCC
Q 047519 663 MTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSY 742 (892)
Q Consensus 663 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 742 (892)
+.|+|++|.+++. |. ...+++|+.|+ |++|+|++. |..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++
T Consensus 172 ~~L~Ls~N~l~~~-~~-~~~l~~L~~L~-Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 172 EHLNLQYNFIYDV-KG-QVVFAKLKTLD-LSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CEEECTTSCCCEE-EC-CCCCTTCCEEE-CCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTT
T ss_pred cEEecCCCccccc-cc-cccCCCCCEEE-CCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCC
Confidence 5555555555433 11 22355555555 555555532 2235555555555555555553 455555555555555555
Q ss_pred CcCc
Q 047519 743 NQFE 746 (892)
Q Consensus 743 N~l~ 746 (892)
|++.
T Consensus 247 N~l~ 250 (487)
T 3oja_A 247 NGFH 250 (487)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 5555
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.7e-23 Score=222.15 Aligned_cols=210 Identities=21% Similarity=0.193 Sum_probs=168.9
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
++++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56777777777777666677888888888888888887666678888888888888888888777788888888888888
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCc-CCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV-LPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI 653 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (892)
+|.+.+..+..+ ..+++|++|++++|++++. +|..+ .
T Consensus 109 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~~-~--------------------------------------- 146 (276)
T 2z62_A 109 ETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYF-S--------------------------------------- 146 (276)
T ss_dssp TSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGGG-G---------------------------------------
T ss_pred CCCccccCchhc--ccCCCCCEEECcCCccceecCchhh-c---------------------------------------
Confidence 888877666555 7788889999999888753 45432 1
Q ss_pred hHHHhhhhheeeecCCCcCCCCChhhhcCccccc----cccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCcccc
Q 047519 654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK----GLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQL 729 (892)
Q Consensus 654 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~----~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 729 (892)
.+++|+.|++++|++++..+..+..+.+|+ .|+ +++|++++..+..+. ..+|+.|+|++|++++..+..|
T Consensus 147 ----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~-ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 147 ----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp ----GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE-CCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTT
T ss_pred ----cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeee-cCCCcccccCccccC-CCcccEEECCCCceeecCHhHh
Confidence 156788899999999877777887777777 788 999999966555554 4589999999999997777778
Q ss_pred CCCCCCCEEECCCCcCcccCCCC
Q 047519 730 TSLKYLSVLNLSYNQFEGPIPQG 752 (892)
Q Consensus 730 ~~l~~L~~L~ls~N~l~g~iP~~ 752 (892)
..+++|+.|++++|++++.+|.-
T Consensus 221 ~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccccEEEccCCcccccCCch
Confidence 99999999999999999988754
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=9.1e-25 Score=250.58 Aligned_cols=217 Identities=21% Similarity=0.164 Sum_probs=180.6
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
+|+.|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 67788888888887777888889999999999999986555 8889999999999999877332 3899999999
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (892)
+|.+++..+. .+++|+.|++++|.+++..|..+ +
T Consensus 108 ~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~-~---------------------------------------- 141 (487)
T 3oja_A 108 NNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE-G---------------------------------------- 141 (487)
T ss_dssp SSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCG-G----------------------------------------
T ss_pred CCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhh-c----------------------------------------
Confidence 9999876553 35789999999999998766442 2
Q ss_pred HHHhhhhheeeecCCCcCCCCChhhhc-CccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519 655 IERILTIFMTIDLSSNKFQGGIPEVVG-KLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK 733 (892)
Q Consensus 655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~-~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 733 (892)
.+++|+.|+|++|.+++.+|..+. .+++|+.|+ |++|.|++..+ +..+++|+.|+|++|.+++. |..+..++
T Consensus 142 ---~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~-Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~ 214 (487)
T 3oja_A 142 ---CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN-LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAA 214 (487)
T ss_dssp ---GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE-CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGT
T ss_pred ---CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe-cCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCC
Confidence 167899999999999998998886 799999999 99999996633 44699999999999999975 45599999
Q ss_pred CCCEEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCC
Q 047519 734 YLSVLNLSYNQFEGPIPQG-SQFNTFRNDSYVGNSGLCGF 772 (892)
Q Consensus 734 ~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~ 772 (892)
+|+.|++++|++++ +|.. ..+..+....+.||+..|++
T Consensus 215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 99999999999997 5543 34566777888999999864
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=8.1e-27 Score=276.45 Aligned_cols=438 Identities=13% Similarity=0.018 Sum_probs=257.9
Q ss_pred cccccCCCCCEEEcccCCCCCcC---CccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCcccc-CC
Q 047519 230 KDLGEAKKILGMEICRNRTCGKT---MDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKS-TL 305 (892)
Q Consensus 230 ~~l~~l~~L~~L~L~~n~~~~~~---~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l 305 (892)
..+..+++|++|++++|.....+ |...+ ......++. ....+++|++|++++|.+++..+..+. .+
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~---------~~~~~~l~~-l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 129 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWG---------GYVYPWIEA-MSSSYTWLEEIRLKRMVVTDDCLELIAKSF 129 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSC---------CBCHHHHHH-HHHHCTTCCEEEEESCBCCHHHHHHHHHHC
T ss_pred HHHhhCCCceEEeccCCCchhhccccccccc---------chhhHHHHH-HHHhCCCCCeEEeeCcEEcHHHHHHHHHhC
Confidence 34567889999999987532211 11100 011111222 345788999999999998877666665 68
Q ss_pred CCCcEEecCcccccc-ceee-cc-chhhhhhccCCCCCcCEEEccCCcCCcCCCcccc----CCCCCCEEECcCCc--CC
Q 047519 306 QSTVVLSTTEAEYMA-ITKA-VK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVY----ELENLILLRLPSNR--LS 376 (892)
Q Consensus 306 ~~L~~L~l~~~~~n~-l~~~-~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~L~~n~--l~ 376 (892)
++|++|+++ +|. +... ++ .+ .++++|++|++++|.+++..+..+. .+++|++|++++|. +.
T Consensus 130 ~~L~~L~L~---~~~~~~~~~l~~~~-------~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 199 (594)
T 2p1m_B 130 KNFKVLVLS---SCEGFSTDGLAAIA-------ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199 (594)
T ss_dssp TTCCEEEEE---SCEEEEHHHHHHHH-------HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred CCCcEEeCC---CcCCCCHHHHHHHH-------HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCC
Confidence 999999999 884 3322 33 33 5789999999999998776555444 66799999999986 32
Q ss_pred CccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCC-------CCCcchhhhCCCCccEE-EccCCC
Q 047519 377 GTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACN-------ISEFPDILRTLHQLQWF-NLSKNR 447 (892)
Q Consensus 377 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~-------l~~lp~~l~~l~~L~~L-~Ls~n~ 447 (892)
.......+..+++|++|++++| ...+.++... .+++|++|+++.+. +..++..+.++++|+.| .+.+..
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~ 277 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTT--SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC
T ss_pred HHHHHHHHHhCCCCcEEecCCC--CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc
Confidence 1111122345799999999988 3333344444 67889999876654 23455678888899888 444332
Q ss_pred CCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc-ccccccCCCCCCEEEcc
Q 047519 448 IHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-ISQKFVNSCNLTNLNLN 526 (892)
Q Consensus 448 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 526 (892)
. +.++..+..+ ++|++|++++|.+++..... .+..+++|+.|++++| +.+. ++.....+++|++|++.
T Consensus 278 ~-~~l~~~~~~~--~~L~~L~L~~~~l~~~~l~~-------~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 278 P-AYLPAVYSVC--SRLTTLNLSYATVQSYDLVK-------LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp G-GGGGGGHHHH--TTCCEEECTTCCCCHHHHHH-------HHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred h-hhHHHHHHhh--CCCCEEEccCCCCCHHHHHH-------HHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 2 2455555556 88888888888765432110 0122346777777766 3322 22223346778888773
Q ss_pred C---------CCCCCCCCccc-cCCCCCcEEEccCCCCCCCcchhcc-CCCCCCEEEcc--C----CcCCCCCCCC-C--
Q 047519 527 G---------NRLEGPLPLSL-VNCHHLEVLDVGNNQINDNFPNWLE-ILPELQVLILR--S----NRFWGPIGDN-T-- 586 (892)
Q Consensus 527 ~---------n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~--~----N~l~~~~~~~-~-- 586 (892)
+ +.+++.....+ ..+++|++|+++.|.+++..+..+. .+++|+.|+++ + |.+++..... +
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 3 33432222222 2367777777777777665444444 46777777777 2 3332110000 0
Q ss_pred CCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeee
Q 047519 587 TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTID 666 (892)
Q Consensus 587 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 666 (892)
.+..+++|+.|++++ .+++..+.. ....+++|+.|+
T Consensus 427 l~~~~~~L~~L~L~~-~l~~~~~~~-------------------------------------------l~~~~~~L~~L~ 462 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG-LLTDKVFEY-------------------------------------------IGTYAKKMEMLS 462 (594)
T ss_dssp HHHHCTTCCEEECCS-SCCHHHHHH-------------------------------------------HHHHCTTCCEEE
T ss_pred HHhhCCCccEEeecC-cccHHHHHH-------------------------------------------HHHhchhccEee
Confidence 013455666666655 333211111 011145677777
Q ss_pred cCCCcCCCCChhhh-cCccccccccccCCCCCCCCcch-hccCCCCCCeeeCCCCcCCCCCcccc-CCCCCCCEEECCCC
Q 047519 667 LSSNKFQGGIPEVV-GKLNLLKGLNNISHNNLTGDIPS-LLRNLTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNLSYN 743 (892)
Q Consensus 667 Ls~N~l~~~~p~~~-~~l~~L~~L~~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~ls~N 743 (892)
|++|.+++..+..+ ..+++|+.|+ |++|.+++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~-L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLE-IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEE-EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEE-CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 77777765444444 5567777776 777777544333 33446777777777777643333333 34556655555554
Q ss_pred cC
Q 047519 744 QF 745 (892)
Q Consensus 744 ~l 745 (892)
.-
T Consensus 542 ~~ 543 (594)
T 2p1m_B 542 GA 543 (594)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.3e-24 Score=235.57 Aligned_cols=237 Identities=22% Similarity=0.186 Sum_probs=146.1
Q ss_pred CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519 336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL 415 (892)
Q Consensus 336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 415 (892)
..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|++ .+.. ..++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l--~~l~----~~~~L 101 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV--QELL----VGPSI 101 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEE--EEEE----ECTTC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcc--cccc----CCCCc
Confidence 456677777777777776666677777777777777777764433 66777777777777732 2211 12455
Q ss_pred cEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCc
Q 047519 416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLT 495 (892)
Q Consensus 416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~ 495 (892)
++|++++|.++.++. ..+++|++|++++|++++..+..+..+ + +
T Consensus 102 ~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l--~--------------------------------~ 145 (317)
T 3o53_A 102 ETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCR--S--------------------------------R 145 (317)
T ss_dssp CEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGG--S--------------------------------S
T ss_pred CEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhcc--C--------------------------------C
Confidence 555555555554432 123445555555555544333333333 3 5
Q ss_pred ccEEECCCCccCccccccc-cCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 496 HKVLDMRMNNFNGKISQKF-VNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 496 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|+++
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECc
Confidence 5555555555555545544 3567777777777777743 3 23347778888888888876 44457777888888888
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCc-CcCCcchhhhhhhhhcccC
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT-GVLPTGYLDNFKAMMHGNN 624 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~l~~l~~l~~ 624 (892)
+|++++ +|..+ ..+++|+.|++++|+++ +.+| .++..++.+..+++
T Consensus 223 ~N~l~~-l~~~~--~~l~~L~~L~l~~N~~~~~~~~-~~~~~~~~L~~l~l 269 (317)
T 3o53_A 223 NNKLVL-IEKAL--RFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAK 269 (317)
T ss_dssp TSCCCE-ECTTC--CCCTTCCEEECTTCCCBHHHHH-HHHHTCHHHHHHHH
T ss_pred CCcccc-hhhHh--hcCCCCCEEEccCCCccCcCHH-HHHhccccceEEEC
Confidence 888763 55554 67778888888888887 3333 44555555555443
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=5.4e-26 Score=269.40 Aligned_cols=439 Identities=12% Similarity=0.032 Sum_probs=214.3
Q ss_pred CCccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCC-C-CCC------------cCcCCC
Q 047519 50 DCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYS-E-ISS------------GFSQLR 115 (892)
Q Consensus 50 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~-~p~------------~~~~l~ 115 (892)
-|++|.++... ....++++... +..+. ..+..+++|++|+|+++..... . .|. ....++
T Consensus 33 vck~W~~~~~~----~~~~l~~~~~~--~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 33 VCKSWYEIERW----CRRKVFIGNCY--AVSPA-TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp SCHHHHHHHHH----HCCEEEESSTT--SSCHH-HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHHhhhh----hceEEeecccc--ccCHH-HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 46689998322 23345554322 11111 1356788999999998753211 0 111 124577
Q ss_pred CCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcc--hhhhhhcccCCCCCCCEEecCCccCccccccc-----
Q 047519 116 SLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDC--FQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE----- 188 (892)
Q Consensus 116 ~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~--~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~----- 188 (892)
+|++|+|++|.+++..+..+.. .+++|++|+++++...+. ++..+. ++++|++|+|++|.+.+..+..
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~----~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAA----TCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHH----HCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHH----hCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 8888888888777655544421 356666666665421111 334444 5566666666665544433221
Q ss_pred CCCCCCcccEEEccCCCCcCccCCh-hHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecc
Q 047519 189 NWLQEESFIYLLLHVDDMEIASKSK-DEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQ 267 (892)
Q Consensus 189 ~~l~~~~L~~L~Ls~n~~~l~~~~p-~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~ 267 (892)
..+ ++|++|++++| . +.+. ..+. .
T Consensus 181 ~~~--~~L~~L~l~~~--~--~~~~~~~l~------------~------------------------------------- 205 (594)
T 2p1m_B 181 DTY--TSLVSLNISCL--A--SEVSFSALE------------R------------------------------------- 205 (594)
T ss_dssp TTC--CCCCEEECTTC--C--SCCCHHHHH------------H-------------------------------------
T ss_pred hcC--CcCcEEEeccc--C--CcCCHHHHH------------H-------------------------------------
Confidence 233 45555555554 3 1111 0000 1
Q ss_pred cceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCcc----ccccceeeccchhhhhhccCCCCCcCE
Q 047519 268 SVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEA----EYMAITKAVKEAIWLQVFVRGRRHYAE 343 (892)
Q Consensus 268 ~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~----~~n~l~~~~p~l~~l~l~~~~l~~L~~ 343 (892)
.+..+++|++|++++|...+.+|..+..+++|+.|+++.+ ..+.+.+..+.+ .++++|+.
T Consensus 206 ---------l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l-------~~~~~L~~ 269 (594)
T 2p1m_B 206 ---------LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL-------SGCKELRC 269 (594)
T ss_dssp ---------HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH-------HTCTTCCE
T ss_pred ---------HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH-------hcCCCccc
Confidence 1123344444444444221123344444444444443300 022222211144 55666666
Q ss_pred E-EccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEcc
Q 047519 344 P-HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLS 421 (892)
Q Consensus 344 L-~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~ 421 (892)
| .+..... +.++..+..+++|++|++++|.+++......+..+++|++|++++| ......+... .+++|++|++.
T Consensus 270 Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 270 LSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp EECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEe
Confidence 6 2322211 2334444456677777777776554333233456677777777766 1111122112 35667777663
Q ss_pred ---------CCCCC--CcchhhhCCCCccEEEccCCCCCCCCchhhh-hhCCCcccEEEccC------CCCCCCCCCCCC
Q 047519 422 ---------ACNIS--EFPDILRTLHQLQWFNLSKNRIHGRISSWMW-DLGITALYYLDLSN------NFLTNIEYFPPT 483 (892)
Q Consensus 422 ---------~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~~L~~L~Ls~------n~l~~~~~~~~~ 483 (892)
.+.++ .+......+++|++|+++.|.+++.....+. .+ ++|+.|+++. +.++....
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~--~~L~~L~L~~~~~~~~~~l~~~~~---- 420 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR--PNMTRFRLCIIEPKAPDYLTLEPL---- 420 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC--TTCCEEEEEESSTTCCCTTTCCCT----
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC--CCcceeEeecccCCCcccccCCch----
Confidence 23444 2223334578888888888887755544444 34 7788888772 22221100
Q ss_pred CCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccC-CCCCcEEEccCCCCCCCcchhc
Q 047519 484 NMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVN-CHHLEVLDVGNNQINDNFPNWL 562 (892)
Q Consensus 484 ~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~ 562 (892)
...++..+..+++|++|++++ .+++..+..+.. +++|++|+|++|.+++..+..+
T Consensus 421 -----------------------~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l 476 (594)
T 2p1m_B 421 -----------------------DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476 (594)
T ss_dssp -----------------------HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred -----------------------hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence 001122234455566666654 444333333333 5566666666666654433333
Q ss_pred -cCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519 563 -EILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605 (892)
Q Consensus 563 -~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (892)
..+++|++|++++|.+++...... ...+++|++|++++|+++
T Consensus 477 ~~~~~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 477 LSGCDSLRKLEIRDCPFGDKALLAN-ASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHCTTCCEEEEESCSCCHHHHHHT-GGGGGGSSEEEEESSCCB
T ss_pred HhcCCCcCEEECcCCCCcHHHHHHH-HHhCCCCCEEeeeCCCCC
Confidence 446666666666666532222111 134566677777776663
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.1e-22 Score=212.72 Aligned_cols=206 Identities=21% Similarity=0.256 Sum_probs=161.6
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
..+.++++++.++. +|..+. +++++|++++|++++..+..|.++++|++|++++|+++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 34566666666663 444433 467888888888876666677888888888888888877666666778888888888
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (892)
+|++++..+..+ ..+++|++|++++|++++..|.. +.
T Consensus 94 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~---------------------------------------- 130 (270)
T 2o6q_A 94 DNKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRV-FD---------------------------------------- 130 (270)
T ss_dssp SSCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTT-TT----------------------------------------
T ss_pred CCcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHH-hC----------------------------------------
Confidence 888876655554 67788888888888887554432 21
Q ss_pred HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519 655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 734 (892)
Q Consensus 655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 734 (892)
.+++|+.|+|++|++++..+..+..+++|+.|+ +++|++++..+..|.++++|+.|+|++|++++..+..|..+++
T Consensus 131 ---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 131 ---SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR-LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp ---TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ---cCcCCCEEECCCCcCCccCHhHccCCcccceeE-ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 156788899999999876666788999999998 9999999877788999999999999999999777777999999
Q ss_pred CCEEECCCCcCcccCC
Q 047519 735 LSVLNLSYNQFEGPIP 750 (892)
Q Consensus 735 L~~L~ls~N~l~g~iP 750 (892)
|+.|++++|++.+..+
T Consensus 207 L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 207 LKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCEEECCSSCBCCSSS
T ss_pred CCEEEecCCCeeCCCc
Confidence 9999999999987765
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.5e-22 Score=214.78 Aligned_cols=211 Identities=19% Similarity=0.180 Sum_probs=146.4
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH 542 (892)
Q Consensus 463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 542 (892)
+|++|++++|.+++..+..+..+. +|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFP--------ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCT--------TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CccEEECCCCcccccCHhHhcccc--------CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 344444444444444333333333 555555555555555555666777777777777777766667777778
Q ss_pred CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCC-CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhc
Q 047519 543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH 621 (892)
Q Consensus 543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~ 621 (892)
+|++|++++|++.+..+..+..+++|++|++++|.+++. +|..+ ..+++|++|++++|++++..+.. +..+..
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~--- 174 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTD-LRVLHQ--- 174 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGG-GHHHHT---
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHHH-hhhhhh---
Confidence 888888888887776665677788888888888887663 45555 77888888888888888654432 332221
Q ss_pred ccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhhe-eeecCCCcCCCCChhhhcCccccccccccCCCCCCCC
Q 047519 622 GNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD 700 (892)
Q Consensus 622 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ 700 (892)
++.+. .|++++|++++..+..+. ..+|+.|+ +++|++++.
T Consensus 175 -------------------------------------L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~-L~~n~l~~~ 215 (276)
T 2z62_A 175 -------------------------------------MPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELA-LDTNQLKSV 215 (276)
T ss_dssp -------------------------------------CTTCCEEEECCSSCCCEECTTSSC-SCCEEEEE-CCSSCCSCC
T ss_pred -------------------------------------ccccceeeecCCCcccccCccccC-CCcccEEE-CCCCceeec
Confidence 12222 799999999955554444 45899998 999999987
Q ss_pred cchhccCCCCCCeeeCCCCcCCCCCc
Q 047519 701 IPSLLRNLTEVESLDLSSNMLVGHIP 726 (892)
Q Consensus 701 ip~~l~~l~~L~~L~Ls~N~l~~~ip 726 (892)
.+..|+++++|+.|+|++|++++..|
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CHhHhcccccccEEEccCCcccccCC
Confidence 77778999999999999999997654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.8e-22 Score=211.23 Aligned_cols=201 Identities=22% Similarity=0.242 Sum_probs=148.6
Q ss_pred CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519 494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573 (892)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 573 (892)
++++.++++++.++. +|..+. +.++.|++++|.+++..+..+..+++|++|++++|++++. +. ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEEC
Confidence 377888888888773 444443 5788888888888877677788888888888888888763 32 267788888888
Q ss_pred cCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchh
Q 047519 574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI 653 (892)
Q Consensus 574 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (892)
++|+++ .+|..+ ..+++|++|++++|++++..|.. +..
T Consensus 85 s~N~l~-~l~~~~--~~l~~L~~L~l~~N~l~~l~~~~-~~~-------------------------------------- 122 (290)
T 1p9a_G 85 SHNQLQ-SLPLLG--QTLPALTVLDVSFNRLTSLPLGA-LRG-------------------------------------- 122 (290)
T ss_dssp CSSCCS-SCCCCT--TTCTTCCEEECCSSCCCCCCSST-TTT--------------------------------------
T ss_pred CCCcCC-cCchhh--ccCCCCCEEECCCCcCcccCHHH-HcC--------------------------------------
Confidence 888876 455544 67788888888888887544432 221
Q ss_pred hHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519 654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK 733 (892)
Q Consensus 654 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 733 (892)
+++|+.|+|++|++++..+..|..+++|+.|+ |++|+|++..+..|.++++|+.|+|++|+++ .+|..+..++
T Consensus 123 -----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~ 195 (290)
T 1p9a_G 123 -----LGELQELYLKGNELKTLPPGLLTPTPKLEKLS-LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195 (290)
T ss_dssp -----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE-CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred -----CCCCCEEECCCCCCCccChhhcccccCCCEEE-CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence 56677888888888866666777888888887 8888888666666777888888888888887 6777777777
Q ss_pred CCCEEECCCCcCccc
Q 047519 734 YLSVLNLSYNQFEGP 748 (892)
Q Consensus 734 ~L~~L~ls~N~l~g~ 748 (892)
.|+.+++++|++.+.
T Consensus 196 ~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 196 LLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSEEECCSCCBCCS
T ss_pred cCCeEEeCCCCccCc
Confidence 888888888888754
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=6e-22 Score=209.46 Aligned_cols=160 Identities=24% Similarity=0.236 Sum_probs=67.5
Q ss_pred hhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccc
Q 047519 432 LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS 511 (892)
Q Consensus 432 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~ 511 (892)
+..+++|++|++++|.+.+. + .+..+ ++|++|++++|.+++..+..+..+. +|++|++++|++++..+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~-~-~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~--------~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI-S-ALKEL--TNLTYLILTGNQLQSLPNGVFDKLT--------NLKELVLVENQLQSLPD 126 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC-G-GGTTC--TTCCEEECTTSCCCCCCTTTTTTCT--------TCCEEECTTSCCCCCCT
T ss_pred cccCCCCcEEECCCCCCCCc-h-hhcCC--CCCCEEECCCCccCccChhHhcCCc--------CCCEEECCCCcCCccCH
Confidence 44445555555555554431 1 23333 4444444444444433333333222 33444444444443333
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCC
Q 047519 512 QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPF 591 (892)
Q Consensus 512 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 591 (892)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+
T Consensus 127 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l 204 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRL 204 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTC
T ss_pred HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH--hCC
Confidence 334444444444444444443333334444444444444444444333334444444444444444443333322 334
Q ss_pred CCccEEEcCCCCCc
Q 047519 592 PRFRIIDLSHNEFT 605 (892)
Q Consensus 592 ~~L~~L~Ls~N~l~ 605 (892)
++|++|++++|.+.
T Consensus 205 ~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 205 TSLQYIWLHDNPWD 218 (272)
T ss_dssp TTCCEEECCSSCBC
T ss_pred cCCCEEEccCCCcc
Confidence 44444444444433
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=5.8e-22 Score=213.96 Aligned_cols=205 Identities=21% Similarity=0.200 Sum_probs=117.4
Q ss_pred ccEEECCCCccCccccccc--cCCCCCCEEEccCCCCCCCCC----ccccCCCCCcEEEccCCCCCCCcchhccCCCCCC
Q 047519 496 HKVLDMRMNNFNGKISQKF--VNSCNLTNLNLNGNRLEGPLP----LSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQ 569 (892)
Q Consensus 496 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 569 (892)
|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4555555555555444444 445555555555555544333 2223444555555555555544444455555555
Q ss_pred EEEccCCcCCCC--CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEE
Q 047519 570 VLILRSNRFWGP--IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILT 647 (892)
Q Consensus 570 ~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (892)
+|++++|++.+. ++....+..+++|++|++++|+++. +|.
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~------------------------------------- 214 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG------------------------------------- 214 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH-------------------------------------
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH-------------------------------------
Confidence 555555544331 1111111344455555555555431 110
Q ss_pred EccchhhHHHhhhhheeeecCCCcCCCCChhhhcCc---cccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC
Q 047519 648 IKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL---NLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH 724 (892)
Q Consensus 648 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l---~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 724 (892)
........+++|+.|||++|++++.+|..++.+ ++|++|+ |++|+|+ .+|..+. ++|+.|||++|++++.
T Consensus 215 ---~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~-Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 215 ---VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN-LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp ---HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE-CCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred ---HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE-CCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence 001112336778888888888887777777766 5888887 8888888 6677664 7888888888888853
Q ss_pred CccccCCCCCCCEEECCCCcCcc
Q 047519 725 IPTQLTSLKYLSVLNLSYNQFEG 747 (892)
Q Consensus 725 ip~~l~~l~~L~~L~ls~N~l~g 747 (892)
|. +..+++|+.|++++|+++.
T Consensus 288 -~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 -PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -CC-TTSCCCCSCEECSSTTTSC
T ss_pred -ch-hhhCCCccEEECcCCCCCC
Confidence 33 6677888888888888863
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.2e-22 Score=210.65 Aligned_cols=200 Identities=22% Similarity=0.229 Sum_probs=151.0
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
+|+.|++++|.+... ..+..+++|++|++++|.+++ + ..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 444455555544421 235667778888888887775 3 367778888888888888887766677788888888888
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (892)
+|++++..+..+ ..+++|++|++++|++++..|.. +..
T Consensus 118 ~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~-~~~--------------------------------------- 155 (272)
T 3rfs_A 118 ENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPKGV-FDK--------------------------------------- 155 (272)
T ss_dssp TSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT---------------------------------------
T ss_pred CCcCCccCHHHh--ccCCCCCEEECCCCccCccCHHH-hcc---------------------------------------
Confidence 888876666555 67788888888888887544422 211
Q ss_pred HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519 655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 734 (892)
Q Consensus 655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 734 (892)
+++|+.|++++|++++..|..++.+++|+.|+ +++|++++..|..|+.+++|+.|+|++|.+.+.. +.
T Consensus 156 ----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~ 223 (272)
T 3rfs_A 156 ----LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR-LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PG 223 (272)
T ss_dssp ----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TT
T ss_pred ----CccCCEEECCCCCcCccCHHHhcCCccCCEEE-CCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cH
Confidence 56788888888888877777788899999998 9999999888888899999999999999887654 46
Q ss_pred CCEEECCCCcCcccCCCC
Q 047519 735 LSVLNLSYNQFEGPIPQG 752 (892)
Q Consensus 735 L~~L~ls~N~l~g~iP~~ 752 (892)
|+.|+++.|+++|.+|..
T Consensus 224 l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp THHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHHhCCCcccCc
Confidence 888899999999999864
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.7e-21 Score=203.14 Aligned_cols=205 Identities=23% Similarity=0.212 Sum_probs=161.9
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH 542 (892)
Q Consensus 463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 542 (892)
..+.++++++.++.++. .++ +.++.|++++|++++..+..|..+++|++|++++|.++...+..|..++
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NIP----------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CCC----------TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred CCCEEEccCCCCCccCC-CCC----------CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC
Confidence 45566666666665432 222 1567777777777766666788888889999988888866666678888
Q ss_pred CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcc
Q 047519 543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG 622 (892)
Q Consensus 543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l 622 (892)
+|++|++++|++++..+..|..+++|++|++++|++++..+..+ ..+++|++|++++|++++..+ ..+..
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~-~~~~~------- 155 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPK-GVFDK------- 155 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTT-------
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCH-hHccC-------
Confidence 99999999999888777778888999999999999887776665 788899999999999885433 32221
Q ss_pred cCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcc
Q 047519 623 NNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP 702 (892)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip 702 (892)
+++|+.|++++|++++..+..|..+++|+.|+ +++|++++..+
T Consensus 156 ------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~ 198 (270)
T 2o6q_A 156 ------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLK-LDNNQLKRVPE 198 (270)
T ss_dssp ------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-CCSSCCSCCCT
T ss_pred ------------------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEE-CCCCcCCcCCH
Confidence 67788999999999977777899999999998 99999998777
Q ss_pred hhccCCCCCCeeeCCCCcCCCCC
Q 047519 703 SLLRNLTEVESLDLSSNMLVGHI 725 (892)
Q Consensus 703 ~~l~~l~~L~~L~Ls~N~l~~~i 725 (892)
..|..+++|+.|+|++|.+....
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBCCSS
T ss_pred HHhccccCCCEEEecCCCeeCCC
Confidence 78999999999999999987654
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.4e-21 Score=208.25 Aligned_cols=205 Identities=24% Similarity=0.255 Sum_probs=126.8
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCC
Q 047519 514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPR 593 (892)
Q Consensus 514 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 593 (892)
+..+++++++++++|.++ .+|..+. +++++|++++|++++..|..|..+++|++|++++|.+++..+. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCc
Confidence 345566677777777766 4454432 5667777777777666666666677777777777766543322 45666
Q ss_pred ccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCC
Q 047519 594 FRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ 673 (892)
Q Consensus 594 L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 673 (892)
|++|++++|+++ .+|..+ . .++.|+.|++++|+++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~-~-------------------------------------------~l~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLG-Q-------------------------------------------TLPALTVLDVSFNRLT 113 (290)
T ss_dssp CCEEECCSSCCS-SCCCCT-T-------------------------------------------TCTTCCEEECCSSCCC
T ss_pred CCEEECCCCcCC-cCchhh-c-------------------------------------------cCCCCCEEECCCCcCc
Confidence 777777777665 344321 1 1455666777777777
Q ss_pred CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC-
Q 047519 674 GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG- 752 (892)
Q Consensus 674 ~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~- 752 (892)
+..|..|.++++|+.|+ |++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++|+++ .+|.+
T Consensus 114 ~l~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 114 SLPLGALRGLGELQELY-LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp CCCSSTTTTCTTCCEEE-CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ccCHHHHcCCCCCCEEE-CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 55556666777777776 7777777666666666777777777777776555555666777777777777776 44543
Q ss_pred CCCCcccCCccCCCCCCCCC
Q 047519 753 SQFNTFRNDSYVGNSGLCGF 772 (892)
Q Consensus 753 ~~~~~~~~~~~~gN~~lc~~ 772 (892)
.....+....+.|||+.|++
T Consensus 192 ~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTCCCSEEECCSCCBCCSG
T ss_pred cccccCCeEEeCCCCccCcC
Confidence 22333445555666666654
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.2e-21 Score=204.47 Aligned_cols=212 Identities=20% Similarity=0.218 Sum_probs=156.3
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEE
Q 047519 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIID 598 (892)
Q Consensus 519 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 598 (892)
..++++++++.++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--ccCCcCCEEE
Confidence 4567777777777 5555543 577888888888887777777788888888888888877666655 6778888888
Q ss_pred cCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChh
Q 047519 599 LSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPE 678 (892)
Q Consensus 599 Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~ 678 (892)
+++|++++..+.. +.. +++|+.|+|++|++++..+.
T Consensus 90 L~~n~l~~~~~~~-~~~-------------------------------------------l~~L~~L~L~~N~l~~~~~~ 125 (251)
T 3m19_A 90 LANNQLASLPLGV-FDH-------------------------------------------LTQLDKLYLGGNQLKSLPSG 125 (251)
T ss_dssp CTTSCCCCCCTTT-TTT-------------------------------------------CTTCCEEECCSSCCCCCCTT
T ss_pred CCCCcccccChhH-hcc-------------------------------------------cCCCCEEEcCCCcCCCcChh
Confidence 8888887544322 221 56788899999999877777
Q ss_pred hhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCCCCCcc
Q 047519 679 VVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTF 758 (892)
Q Consensus 679 ~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 758 (892)
.+..+++|+.|+ |++|+|++..|..|+++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+....+..+
T Consensus 126 ~~~~l~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~ 204 (251)
T 3m19_A 126 VFDRLTKLKELR-LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204 (251)
T ss_dssp TTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred HhccCCcccEEE-CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence 788999999998 9999999877778999999999999999999888888999999999999999999875432222111
Q ss_pred ------cCCccCCCCCCCCCCCCCCCCCC
Q 047519 759 ------RNDSYVGNSGLCGFPLLESCNID 781 (892)
Q Consensus 759 ------~~~~~~gN~~lc~~~~~~~c~~~ 781 (892)
......|+ .+|+.|....|..+
T Consensus 205 ~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 205 IRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp HHHSGGGBCC--------CCGGGCBBTTS
T ss_pred HHhcccceeeccCc-ccccCCCcCccCCC
Confidence 11122343 36777777778765
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.7e-23 Score=233.68 Aligned_cols=253 Identities=19% Similarity=0.234 Sum_probs=154.9
Q ss_pred CcchhhhCCCCccEEEccCCCCCCCCchh----hhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECC
Q 047519 427 EFPDILRTLHQLQWFNLSKNRIHGRISSW----MWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMR 502 (892)
Q Consensus 427 ~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~ 502 (892)
.++..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.+.
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~--~~L~~L~Ls~~~~~--------------------------- 73 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK--KDLEIAEFSDIFTG--------------------------- 73 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC--TTCCEEECCSCCTT---------------------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC--CCccEEeCcccccC---------------------------
Confidence 56667777788888888888777554433 2233 56666666654332
Q ss_pred CCccCcccccc-------ccCCCCCCEEEccCCCCCC----CCCccccCCCCCcEEEccCCCCCCCcchhcc----CC--
Q 047519 503 MNNFNGKISQK-------FVNSCNLTNLNLNGNRLEG----PLPLSLVNCHHLEVLDVGNNQINDNFPNWLE----IL-- 565 (892)
Q Consensus 503 ~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~----~l-- 565 (892)
++.+.+|.. +..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++..+..+. .+
T Consensus 74 --~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~ 151 (386)
T 2ca6_A 74 --RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151 (386)
T ss_dssp --SCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred --ccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhh
Confidence 122222322 3556666677777766665 2555666666777777777766543332222 22
Q ss_pred -------CCCCEEEccCCcCC-CCCCCC-CCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCC
Q 047519 566 -------PELQVLILRSNRFW-GPIGDN-TTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN 636 (892)
Q Consensus 566 -------~~L~~L~L~~N~l~-~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~ 636 (892)
++|++|++++|+++ +.++.. ..+..+++|++|++++|+++.. + ...+.
T Consensus 152 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---g----~~~l~---------------- 208 (386)
T 2ca6_A 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---G----IEHLL---------------- 208 (386)
T ss_dssp HHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---H----HHHHH----------------
T ss_pred hhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---H----HHHHH----------------
Confidence 67777777777664 222210 0113556777777777766511 0 00000
Q ss_pred CCCccceEEEEEccchhhHHHhhhhheeeecCCCcCC----CCChhhhcCccccccccccCCCCCCCC----cchhccC-
Q 047519 637 SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ----GGIPEVVGKLNLLKGLNNISHNNLTGD----IPSLLRN- 707 (892)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~~p~~~~~l~~L~~L~~Ls~N~l~~~----ip~~l~~- 707 (892)
......+++|+.|+|++|.++ +.+|..+..+++|+.|+ |++|++++. +|..+..
T Consensus 209 ----------------~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~-L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 209 ----------------LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG-LNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp ----------------HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE-CTTCCCCHHHHHHHHHHHHTC
T ss_pred ----------------HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE-CCCCCCchhhHHHHHHHHhhc
Confidence 000112566777888888775 56777778888888887 888888765 5666633
Q ss_pred -CCCCCeeeCCCCcCCC----CCcccc-CCCCCCCEEECCCCcCcccCC
Q 047519 708 -LTEVESLDLSSNMLVG----HIPTQL-TSLKYLSVLNLSYNQFEGPIP 750 (892)
Q Consensus 708 -l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g~iP 750 (892)
+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7888888888888886 477776 557888888888888887654
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=2.1e-22 Score=222.50 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=67.5
Q ss_pred EccCCCCC-CcchhhhCCCCccEEEccCCCCCCCCc----hhhhhhCCC-cccEEEccCCCCCCCCCCCCCCCCeeecCC
Q 047519 419 GLSACNIS-EFPDILRTLHQLQWFNLSKNRIHGRIS----SWMWDLGIT-ALYYLDLSNNFLTNIEYFPPTNMTQLNFDS 492 (892)
Q Consensus 419 ~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~ 492 (892)
.++.|.++ .+|..+...++|++|++++|.+++..+ ..+..+ + +|++|++++|.+++..+..+..+ +..
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~----l~~ 77 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT--PASVTSLNLSGNSLGFKNSDELVQI----LAA 77 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC--CTTCCEEECCSSCGGGSCHHHHHHH----HHT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC--CCceeEEECcCCCCCHHHHHHHHHH----Hhc
Confidence 44444444 333333333345555555555554443 333333 3 45555555554443322111110 000
Q ss_pred -CCcccEEECCCCccCcccccccc----CC-CCCCEEEccCCCCCCCCCccc----cC-CCCCcEEEccCCCCCCCcc--
Q 047519 493 -NLTHKVLDMRMNNFNGKISQKFV----NS-CNLTNLNLNGNRLEGPLPLSL----VN-CHHLEVLDVGNNQINDNFP-- 559 (892)
Q Consensus 493 -~~~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~L~~N~l~~~~p-- 559 (892)
+++|++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+ .. .++|++|+|++|++++..+
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 01445555555555444333222 22 455556666555554433322 22 2455555555555553222
Q ss_pred --hhccCCC-CCCEEEccCCcCCC
Q 047519 560 --NWLEILP-ELQVLILRSNRFWG 580 (892)
Q Consensus 560 --~~~~~l~-~L~~L~L~~N~l~~ 580 (892)
..+..++ +|++|+|++|++++
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHHhcCCccccEeeecCCCCch
Confidence 2223333 55555555555443
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.1e-22 Score=224.82 Aligned_cols=260 Identities=18% Similarity=0.192 Sum_probs=197.2
Q ss_pred EEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCC----CCCCCCCeeecCCCC-cccEEECCCCccCccccccc
Q 047519 440 WFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNL-THKVLDMRMNNFNGKISQKF 514 (892)
Q Consensus 440 ~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~l~~~~-~L~~L~L~~n~l~~~~~~~~ 514 (892)
+++++.|.+++.+|..+... ++|++|++++|.+++..+ ..+. .++ +|++|++++|.+++..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~--------~~~~~L~~L~Ls~N~l~~~~~~~l 71 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIP--HGVTSLDLSLNNLYSISTVELIQAFA--------NTPASVTSLNLSGNSLGFKNSDEL 71 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSC--TTCCEEECTTSCGGGSCHHHHHHHHH--------TCCTTCCEEECCSSCGGGSCHHHH
T ss_pred ccccccccchHHHHHHHhCC--CCceEEEccCCCCChHHHHHHHHHHH--------hCCCceeEEECcCCCCCHHHHHHH
Confidence 57899999999888877665 679999999999987754 2222 223 68999999999998877777
Q ss_pred cCC-----CCCCEEEccCCCCCCCCCcc----ccCC-CCCcEEEccCCCCCCCcchhc----cC-CCCCCEEEccCCcCC
Q 047519 515 VNS-----CNLTNLNLNGNRLEGPLPLS----LVNC-HHLEVLDVGNNQINDNFPNWL----EI-LPELQVLILRSNRFW 579 (892)
Q Consensus 515 ~~l-----~~L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~L~~N~l~~~~p~~~----~~-l~~L~~L~L~~N~l~ 579 (892)
..+ ++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+ .. .++|++|++++|.++
T Consensus 72 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 664 89999999999999776664 4444 899999999999988766554 34 369999999999987
Q ss_pred CCCCCCC--CCcCCC-CccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHH
Q 047519 580 GPIGDNT--TIVPFP-RFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIE 656 (892)
Q Consensus 580 ~~~~~~~--~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (892)
+..+..+ .+..++ +|++|+|++|++++..+..+...+
T Consensus 152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---------------------------------------- 191 (362)
T 3goz_A 152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL---------------------------------------- 191 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------------------
T ss_pred HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------------------
Confidence 4332211 012344 899999999999866554321111
Q ss_pred Hhh-hhheeeecCCCcCCCC----ChhhhcC-ccccccccccCCCCCCCCcc----hhccCCCCCCeeeCCCCcCCCCCc
Q 047519 657 RIL-TIFMTIDLSSNKFQGG----IPEVVGK-LNLLKGLNNISHNNLTGDIP----SLLRNLTEVESLDLSSNMLVGHIP 726 (892)
Q Consensus 657 ~~l-~~L~~LdLs~N~l~~~----~p~~~~~-l~~L~~L~~Ls~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~~ip 726 (892)
... ++|+.|||++|.+++. ++..+.. .++|++|+ |++|++++..+ ..+..+++|+.|+|++|.+.+..+
T Consensus 192 ~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~-Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN-LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE-CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE-CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCH
Confidence 113 5899999999999864 5556655 45999998 99999997655 345778999999999999665443
Q ss_pred -------cccCCCCCCCEEECCCCcCcccCC
Q 047519 727 -------TQLTSLKYLSVLNLSYNQFEGPIP 750 (892)
Q Consensus 727 -------~~l~~l~~L~~L~ls~N~l~g~iP 750 (892)
..+..+++|+.||+++|++.+..|
T Consensus 271 ~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 271 EQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 367888999999999999986643
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=209.34 Aligned_cols=207 Identities=20% Similarity=0.168 Sum_probs=144.3
Q ss_pred CcccEEEccCCCCCCCCCCCC--CCCCeeecCCCCcccEEECCCCccCcccc----ccccCCCCCCEEEccCCCCCCCCC
Q 047519 462 TALYYLDLSNNFLTNIEYFPP--TNMTQLNFDSNLTHKVLDMRMNNFNGKIS----QKFVNSCNLTNLNLNGNRLEGPLP 535 (892)
Q Consensus 462 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~l~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p 535 (892)
++|++|++++|.+++..|..+ ..+. +|++|++++|.+++..+ ..+..+++|++|++++|++++..|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~--------~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGL--------ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCB--------CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCC--------CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence 456666666666655555443 3333 66666666666665433 334567788888888888887777
Q ss_pred ccccCCCCCcEEEccCCCCCCC--c--chhccCCCCCCEEEccCCcCCCCCCCCC-CCcCCCCccEEEcCCCCCcCcCCc
Q 047519 536 LSLVNCHHLEVLDVGNNQINDN--F--PNWLEILPELQVLILRSNRFWGPIGDNT-TIVPFPRFRIIDLSHNEFTGVLPT 610 (892)
Q Consensus 536 ~~l~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~ 610 (892)
..+..+++|++|+|++|++.+. + +..+..+++|++|++++|+++...+... .+..+++|++|||++|++++..|.
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 8888888888888888887652 1 2233578888888888888853211100 014568888889999988877675
Q ss_pred chhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccccccc
Q 047519 611 GYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 690 (892)
Q Consensus 611 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~ 690 (892)
.+.. +. .+++|+.|+|++|+|+ .+|..+. ++|+.|+
T Consensus 243 ~~~~-~~----------------------------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 243 SAPR-CM----------------------------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp CCSS-CC----------------------------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred hHHh-cc----------------------------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 4311 00 0367889999999998 6777765 7899998
Q ss_pred ccCCCCCCCCcchhccCCCCCCeeeCCCCcCCC
Q 047519 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG 723 (892)
Q Consensus 691 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 723 (892)
|++|+|++. |. +..+++|+.|+|++|+++.
T Consensus 279 -Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 279 -LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -CCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -CCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 999999964 44 6788999999999999874
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.3e-20 Score=195.07 Aligned_cols=196 Identities=18% Similarity=0.189 Sum_probs=137.1
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCCCCCcEEEccC-CCCCCCcchhccCCCCCCEEE
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNCHHLEVLDVGN-NQINDNFPNWLEILPELQVLI 572 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 572 (892)
++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55666666666666555667777778888888776 7655555777778888888887 777776666777778888888
Q ss_pred ccCCcCCCCCCCCCCCcCCCCcc---EEEcCCC-CCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEE
Q 047519 573 LRSNRFWGPIGDNTTIVPFPRFR---IIDLSHN-EFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI 648 (892)
Q Consensus 573 L~~N~l~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (892)
+++|++++ +|. + ..+++|+ +|++++| ++++..+ ..+.+
T Consensus 112 l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~--------------------------------- 153 (239)
T 2xwt_C 112 IFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMTSIPV-NAFQG--------------------------------- 153 (239)
T ss_dssp EEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCCEECT-TTTTT---------------------------------
T ss_pred CCCCCCcc-ccc-c--ccccccccccEEECCCCcchhhcCc-ccccc---------------------------------
Confidence 88887765 444 3 5666666 8888888 7764333 22221
Q ss_pred ccchhhHHHhhhhhe-eeecCCCcCCCCChhhhcCccccccccccCCCC-CCCCcchhccCC-CCCCeeeCCCCcCCCCC
Q 047519 649 KGIDIQIERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNN-LTGDIPSLLRNL-TEVESLDLSSNMLVGHI 725 (892)
Q Consensus 649 ~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~i 725 (892)
++.|+ .|++++|+++ .+|......++|+.|+ +++|+ +++..+..|.++ ++|+.||+++|++++ +
T Consensus 154 ----------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~-L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l 220 (239)
T 2xwt_C 154 ----------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY-LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L 220 (239)
T ss_dssp ----------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEE-CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred ----------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEE-cCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence 56677 8888888887 5555443337888887 88884 886666778888 888888888888874 4
Q ss_pred ccccCCCCCCCEEECCCC
Q 047519 726 PTQLTSLKYLSVLNLSYN 743 (892)
Q Consensus 726 p~~l~~l~~L~~L~ls~N 743 (892)
|.. .+++|+.|+++++
T Consensus 221 ~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 221 PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCT--TCTTCSEEECTTC
T ss_pred Chh--HhccCceeeccCc
Confidence 443 5667888888766
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=7.6e-22 Score=215.84 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=189.7
Q ss_pred CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc-cccccc
Q 047519 437 QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-ISQKFV 515 (892)
Q Consensus 437 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~-~~~~~~ 515 (892)
.++.++++++.+. +..+..+..++++.|++++|.+.+..+.. ..+ ++|++|++++|.+++. ++..+.
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~--------~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSP--------FRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCC--------BCCCEEECTTCEECHHHHHHHHT
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccC--------CCCCEEEccCCCcCHHHHHHHHh
Confidence 4778888888775 33333322267888888888887765542 233 3889999999988866 777888
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCC-CCCCC-cchhccCCCCCCEEEccCC-cCCCC-CCCCCCCcCC
Q 047519 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNN-QINDN-FPNWLEILPELQVLILRSN-RFWGP-IGDNTTIVPF 591 (892)
Q Consensus 516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~~~l 591 (892)
.+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+ ..+
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l 193 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHV 193 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHS
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--Hhc
Confidence 8999999999999998888888889999999999999 67753 6677888999999999999 87643 33333 667
Q ss_pred C-CccEEEcCCCC--Cc-CcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeec
Q 047519 592 P-RFRIIDLSHNE--FT-GVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDL 667 (892)
Q Consensus 592 ~-~L~~L~Ls~N~--l~-~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 667 (892)
+ +|++|++++|. ++ +.+|. ....+++|+.|++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~--------------------------------------------~~~~~~~L~~L~l 229 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLST--------------------------------------------LVRRCPNLVHLDL 229 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHH--------------------------------------------HHHHCTTCSEEEC
T ss_pred ccCCCEEEeCCCcccCCHHHHHH--------------------------------------------HHhhCCCCCEEeC
Confidence 8 99999999994 44 12221 1123678999999
Q ss_pred CCCc-CCCCChhhhcCccccccccccCCCC-CCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCC-CCCCEEECCCCc
Q 047519 668 SSNK-FQGGIPEVVGKLNLLKGLNNISHNN-LTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVLNLSYNQ 744 (892)
Q Consensus 668 s~N~-l~~~~p~~~~~l~~L~~L~~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~ 744 (892)
++|. +++..+..+..+++|+.|+ +++|. ++......++++++|+.|++++| ++.. .+..+ ..|..|++++|+
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLS-LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEE-CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEee-CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 9999 7778888999999999998 99995 33222236888999999999999 4432 23333 246777799999
Q ss_pred CcccCCCC
Q 047519 745 FEGPIPQG 752 (892)
Q Consensus 745 l~g~iP~~ 752 (892)
++|..|..
T Consensus 305 l~~~~~~~ 312 (336)
T 2ast_B 305 FTTIARPT 312 (336)
T ss_dssp SCCTTCSS
T ss_pred CccccCCc
Confidence 99988863
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.4e-19 Score=188.79 Aligned_cols=182 Identities=18% Similarity=0.165 Sum_probs=158.5
Q ss_pred CCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCC
Q 047519 413 PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDS 492 (892)
Q Consensus 413 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~ 492 (892)
.+.++++++++.++.+|..+. ++++.|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+..+.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~------ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGL--TKLTWLNLDYNQLQTLSAGVFDDLT------ 83 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTC--TTCCEEECTTSCCCCCCTTTTTTCT------
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCc--ccCCEEECCCCcCCccCHhHhccCC------
Confidence 356778888888888887554 689999999999988888778877 8999999999999988877777776
Q ss_pred CCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEE
Q 047519 493 NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572 (892)
Q Consensus 493 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 572 (892)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+
T Consensus 84 --~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 84 --ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp --TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred --cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 889999999999988888889999999999999999977777789999999999999999997777899999999999
Q ss_pred ccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519 573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL 608 (892)
Q Consensus 573 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 608 (892)
|++|++++..+..+ ..+++|+.|++++|++++..
T Consensus 162 L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 162 LSTNQLQSVPHGAF--DRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCTTS
T ss_pred CCCCcCCccCHHHH--hCCCCCCEEEeeCCceeCCc
Confidence 99999988777666 78999999999999998653
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=7.2e-20 Score=197.01 Aligned_cols=190 Identities=18% Similarity=0.262 Sum_probs=136.4
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
+|+.|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|++++. + .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence 44555555555543 22 356677777777777777743 33 77777788888888777763 3 57777788888888
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (892)
+|++++..+ +..+++|++|++++|++++..+ +.
T Consensus 116 ~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~---------------------------------------- 148 (308)
T 1h6u_A 116 STQITDVTP----LAGLSNLQVLYLDLNQITNISP---LA---------------------------------------- 148 (308)
T ss_dssp TSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GG----------------------------------------
T ss_pred CCCCCCchh----hcCCCCCCEEECCCCccCcCcc---cc----------------------------------------
Confidence 887765422 3677888888888888774432 11
Q ss_pred HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519 655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 734 (892)
Q Consensus 655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 734 (892)
.+++|+.|++++|++++ ++. +..+++|+.|+ +++|++++..+ +..+++|+.|+|++|++++..| +..+++
T Consensus 149 ---~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~-l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 218 (308)
T 1h6u_A 149 ---GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLK-ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN 218 (308)
T ss_dssp ---GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE-CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred ---CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEE-CCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence 15678888888888885 443 88888888888 99998885544 7888899999999999885543 788889
Q ss_pred CCEEECCCCcCcc
Q 047519 735 LSVLNLSYNQFEG 747 (892)
Q Consensus 735 L~~L~ls~N~l~g 747 (892)
|+.|++++|++++
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999998875
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=5.9e-21 Score=208.76 Aligned_cols=252 Identities=19% Similarity=0.138 Sum_probs=153.1
Q ss_pred CCcEEEccCCCCCcCCCccccCC--CCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcC-CCccc
Q 047519 283 KRRSITGYVFNFAGGPINWKSTL--QSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGS-IPSSV 359 (892)
Q Consensus 283 ~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~-~p~~l 359 (892)
.++.++++++.+. +..+..+ ++++.|+++ +|.+.+..+.+ ..+++|++|++++|.+++. +|..+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~---~n~l~~~~~~~-------~~~~~L~~L~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCP---RSFMDQPLAEH-------FSPFRVQHMDLSNSVIEVSTLHGIL 114 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECT---TCEECSCCCSC-------CCCBCCCEEECTTCEECHHHHHHHH
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcC---Cccccccchhh-------ccCCCCCEEEccCCCcCHHHHHHHH
Confidence 3677888877665 3445555 677777777 77776666655 6677777777777777654 66667
Q ss_pred cCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccC-CCCCCccccCCC-CCCCccEEEccCC-CCC--CcchhhhC
Q 047519 360 YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN-RLSLSTKLKVNS-SFPNLFGLGLSAC-NIS--EFPDILRT 434 (892)
Q Consensus 360 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-~l~~L~~L~L~~n-~l~--~lp~~l~~ 434 (892)
..+++|++|++++|.+++..+ ..+..+++|++|++++| .+... .++... .+++|++|++++| .++ .++..+..
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred hhCCCCCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 777777777777777765555 56666777777777776 22100 122212 4555555555555 555 24445555
Q ss_pred CC-CccEEEccCC--CCC-CCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCc-cCcc
Q 047519 435 LH-QLQWFNLSKN--RIH-GRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGK 509 (892)
Q Consensus 435 l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~-l~~~ 509 (892)
++ +|++|++++| .++ +.++..+..+ + +|+.|++++|. +++.
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~--~--------------------------------~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRC--P--------------------------------NLVHLDLSDSVMLKND 238 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHC--T--------------------------------TCSEEECTTCTTCCGG
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhC--C--------------------------------CCCEEeCCCCCcCCHH
Confidence 55 5555555555 233 2233333333 4 45555555555 4445
Q ss_pred ccccccCCCCCCEEEccCCC-CCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCC
Q 047519 510 ISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586 (892)
Q Consensus 510 ~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 586 (892)
.+..+..+++|++|++++|. +.......+..+++|++|++++| ++......+. .+++.|++++|++++..|...
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 55667777888888888885 22221225677888888888888 5443222222 235556678888888877765
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=2.2e-19 Score=185.93 Aligned_cols=78 Identities=23% Similarity=0.244 Sum_probs=41.5
Q ss_pred ccc-EEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCC-CCCcEEEccCCCCCCCcchhccCCCCCCEE
Q 047519 495 THK-VLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNC-HHLEVLDVGNNQINDNFPNWLEILPELQVL 571 (892)
Q Consensus 495 ~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 571 (892)
+|+ .|++++|.++...+..|.. ++|++|++++|+ +++..+..|..+ ++|++|++++|++++. |.. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCcee
Confidence 444 4455444444222222222 556666666663 654445556666 6666666666666653 322 45566666
Q ss_pred EccCC
Q 047519 572 ILRSN 576 (892)
Q Consensus 572 ~L~~N 576 (892)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 66654
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.9e-19 Score=207.84 Aligned_cols=186 Identities=24% Similarity=0.304 Sum_probs=101.3
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH 542 (892)
Q Consensus 463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 542 (892)
+++.|++++|.++++++..+ . +|++|++++|.++ .+| ..+++|++|++++|++++ +|. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~--------~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---P--------QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---T--------TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--
T ss_pred CccEEEeCCCCCCccCHhHc---C--------CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--
Confidence 67777777777776332221 1 5566666666666 344 234566666666666664 444 433
Q ss_pred CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcc
Q 047519 543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG 622 (892)
Q Consensus 543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l 622 (892)
+|++|++++|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. +
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~-lp~-l---------- 178 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTF-LPE-L---------- 178 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC-C----------
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCC-cch-h----------
Confidence 66666666666665 443 45566666666666654 332 24556666666666654 442 1
Q ss_pred cCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccc-------ccccccCCC
Q 047519 623 NNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLL-------KGLNNISHN 695 (892)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L-------~~L~~Ls~N 695 (892)
.++|+.|+|++|+|+ .+|. +.. +| +.|+ |++|
T Consensus 179 ------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~-Ls~N 217 (571)
T 3cvr_A 179 ------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFR-CREN 217 (571)
T ss_dssp ------------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEE-CCSS
T ss_pred ------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEe-cCCC
Confidence 123555666666655 4444 333 44 5555 5555
Q ss_pred CCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS 731 (892)
Q Consensus 696 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 731 (892)
+|+ .+|..+.++++|+.|+|++|++++.+|..+..
T Consensus 218 ~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 555 34555555555555555555555555555444
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=5.1e-21 Score=213.50 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=48.7
Q ss_pred cccCCCCCCEEEccCCCCC----CCCCccccCCCCCcEEEccCCCCCCC----cchhcc--CCCCCCEEEccCCcCCC--
Q 047519 513 KFVNSCNLTNLNLNGNRLE----GPLPLSLVNCHHLEVLDVGNNQINDN----FPNWLE--ILPELQVLILRSNRFWG-- 580 (892)
Q Consensus 513 ~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~-- 580 (892)
.+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|++++. +|..+. .+++|++|+|++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 3444445555555555553 23444555555555555555555543 334442 25556666666665544
Q ss_pred --CCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519 581 --PIGDNTTIVPFPRFRIIDLSHNEFTGVLP 609 (892)
Q Consensus 581 --~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 609 (892)
.+|..+ ..++++|++|++++|++++..|
T Consensus 291 ~~~l~~~l-~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 291 VRTLKTVI-DEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHH-HHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHH-HhcCCCceEEEccCCcCCcchh
Confidence 233221 0234666666666666665543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2e-19 Score=197.39 Aligned_cols=239 Identities=18% Similarity=0.115 Sum_probs=124.8
Q ss_pred cEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCc
Q 047519 416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLT 495 (892)
Q Consensus 416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~ 495 (892)
++++.++++++++|..+ .+++++|+|++|+|+...+..|..+ ++|++|+|++|++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l--~~L~~L~Ls~N~i~-------------------- 67 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGF--GDLEKIEISQNDVL-------------------- 67 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTC--TTCCEEEEECCTTC--------------------
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCC--CCCCEEECcCCCCC--------------------
Confidence 34555555666665433 2345555555555553333334444 45555555554443
Q ss_pred ccEEECCCCccCcccc-ccccCCCCCCE-EEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519 496 HKVLDMRMNNFNGKIS-QKFVNSCNLTN-LNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573 (892)
Q Consensus 496 L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 573 (892)
+.+| ..|.+++++++ +.+++|+++...|..|..+++|++|++++|++....+..+....++..|++
T Consensus 68 ------------~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 68 ------------EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp ------------CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred ------------CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 3332 23445555443 344456666555556666666666666666666544444445555666666
Q ss_pred cCC-cCCCCCCCCCCCcCC-CCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccc
Q 047519 574 RSN-RFWGPIGDNTTIVPF-PRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGI 651 (892)
Q Consensus 574 ~~N-~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (892)
.++ ++....+..+ ..+ ..+++|++++|+|+. +|...+.
T Consensus 136 ~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i~~-i~~~~f~------------------------------------- 175 (350)
T 4ay9_X 136 QDNINIHTIERNSF--VGLSFESVILWLNKNGIQE-IHNSAFN------------------------------------- 175 (350)
T ss_dssp ESCTTCCEECTTSS--TTSBSSCEEEECCSSCCCE-ECTTSST-------------------------------------
T ss_pred ccccccccccccch--hhcchhhhhhccccccccC-CChhhcc-------------------------------------
Confidence 543 3322222222 222 346667777777763 3322211
Q ss_pred hhhHHHhhhhheeeecCC-CcCCCCCh-hhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCcccc
Q 047519 652 DIQIERILTIFMTIDLSS-NKFQGGIP-EVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQL 729 (892)
Q Consensus 652 ~~~~~~~l~~L~~LdLs~-N~l~~~~p-~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 729 (892)
...++.|++++ |.++ .+| ..|.++++|+.|+ +++|+|+...+..|. +|+.|.+.++.--..+| .+
T Consensus 176 -------~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~Ld-Ls~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 176 -------GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILD-ISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp -------TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEE-CTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CT
T ss_pred -------ccchhHHhhccCCccc-CCCHHHhccCcccchhh-cCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cc
Confidence 33466677764 4444 444 4567777777776 777777744333333 34444433333333555 36
Q ss_pred CCCCCCCEEECCCC
Q 047519 730 TSLKYLSVLNLSYN 743 (892)
Q Consensus 730 ~~l~~L~~L~ls~N 743 (892)
..+++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 67777777777654
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=4.1e-19 Score=191.13 Aligned_cols=194 Identities=22% Similarity=0.302 Sum_probs=112.4
Q ss_pred cCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCcc
Q 047519 360 YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQ 439 (892)
Q Consensus 360 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 439 (892)
..+++|++|++++|.++. ++ .+..+++|++|++++| .++.++. +..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~--~~~~l~~L~~L~L~~n-------------------------~i~~~~~-~~~l~~L~ 88 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE--GVQYLNNLIGLELKDN-------------------------QITDLAP-LKNLTKIT 88 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSS-------------------------CCCCCGG-GTTCCSCC
T ss_pred HHcCCcCEEEeeCCCccC-ch--hhhccCCCCEEEccCC-------------------------cCCCChh-HccCCCCC
Confidence 345566666666666552 22 3455555555555555 4444433 44455555
Q ss_pred EEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCC
Q 047519 440 WFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN 519 (892)
Q Consensus 440 ~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 519 (892)
+|++++|.+.+. + .+..+ ++|++|++++|.+++..+ +..+ ++|++|++++|.+++..+ +..+++
T Consensus 89 ~L~L~~n~l~~~-~-~~~~l--~~L~~L~l~~n~l~~~~~--l~~l--------~~L~~L~l~~n~l~~~~~--l~~l~~ 152 (308)
T 1h6u_A 89 ELELSGNPLKNV-S-AIAGL--QSIKTLDLTSTQITDVTP--LAGL--------SNLQVLYLDLNQITNISP--LAGLTN 152 (308)
T ss_dssp EEECCSCCCSCC-G-GGTTC--TTCCEEECTTSCCCCCGG--GTTC--------TTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred EEEccCCcCCCc-h-hhcCC--CCCCEEECCCCCCCCchh--hcCC--------CCCCEEECCCCccCcCcc--ccCCCC
Confidence 555555554432 2 23333 455555555555444321 2222 255566666666554433 566777
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEc
Q 047519 520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL 599 (892)
Q Consensus 520 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 599 (892)
|++|++++|++++. +. +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ + ..+++|+.|++
T Consensus 153 L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l--~~l~~L~~L~l 224 (308)
T 1h6u_A 153 LQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L--ANTSNLFIVTL 224 (308)
T ss_dssp CCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--G--TTCTTCCEEEE
T ss_pred ccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--c--cCCCCCCEEEc
Confidence 77777777777743 33 6777777777777777776433 6677777777777777765543 2 66777778888
Q ss_pred CCCCCcC
Q 047519 600 SHNEFTG 606 (892)
Q Consensus 600 s~N~l~~ 606 (892)
++|++++
T Consensus 225 ~~N~i~~ 231 (308)
T 1h6u_A 225 TNQTITN 231 (308)
T ss_dssp EEEEEEC
T ss_pred cCCeeec
Confidence 8777763
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=5e-19 Score=194.27 Aligned_cols=241 Identities=16% Similarity=0.156 Sum_probs=151.7
Q ss_pred CEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcch-hhhCCCCccEEEccCCCCCCCCch-hhhhhCCCcccE-E
Q 047519 391 KWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISS-WMWDLGITALYY-L 467 (892)
Q Consensus 391 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~~~L~~-L 467 (892)
++++-+++++ . .+|... .+++++|+|++|+|+.+|. .|.++++|++|+|++|++.+.+|. .|..+ +++.+ +
T Consensus 12 ~~v~C~~~~L--t-~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L--~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKV--T-EIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL--PKLHEIR 85 (350)
T ss_dssp TEEEEESTTC--C-SCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC--TTCCEEE
T ss_pred CEEEecCCCC--C-ccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc--hhhhhhh
Confidence 5677788733 3 344433 4689999999999999985 689999999999999999776664 34444 44433 3
Q ss_pred EccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 047519 468 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVL 547 (892)
Q Consensus 468 ~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 547 (892)
.+..|+++ ...|..|..+++|++|++++|++++..+..+....++..|
T Consensus 86 ~~~~N~l~--------------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 86 IEKANNLL--------------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133 (350)
T ss_dssp EEEETTCC--------------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred cccCCccc--------------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence 33344444 4445556666666777777776665555555555566666
Q ss_pred EccC-CCCCCCcchhccCCC-CCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCC
Q 047519 548 DVGN-NQINDNFPNWLEILP-ELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNN 625 (892)
Q Consensus 548 ~L~~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~ 625 (892)
++.+ +++....+..|..+. .++.|++++|+++.. +... ....+|+.+++++|+..+.+|...+.+
T Consensus 134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~--f~~~~L~~l~l~~~n~l~~i~~~~f~~---------- 200 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSA--FNGTQLDELNLSDNNNLEELPNDVFHG---------- 200 (350)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTS--STTEEEEEEECTTCTTCCCCCTTTTTT----------
T ss_pred hhccccccccccccchhhcchhhhhhccccccccCC-Chhh--ccccchhHHhhccCCcccCCCHHHhcc----------
Confidence 6654 455554444555543 567777777777543 3322 344567777777544444566543322
Q ss_pred CccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhc
Q 047519 626 SVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLL 705 (892)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l 705 (892)
+++|+.|||++|+|+...+..+.+++.|+.++ + ++++ .+|. +
T Consensus 201 ---------------------------------l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~-~--~~l~-~lP~-l 242 (350)
T 4ay9_X 201 ---------------------------------ASGPVILDISRTRIHSLPSYGLENLKKLRARS-T--YNLK-KLPT-L 242 (350)
T ss_dssp ---------------------------------EECCSEEECTTSCCCCCCSSSCTTCCEEECTT-C--TTCC-CCCC-T
T ss_pred ---------------------------------CcccchhhcCCCCcCccChhhhccchHhhhcc-C--CCcC-cCCC-c
Confidence 56677788888888744444455555555544 3 4444 5563 6
Q ss_pred cCCCCCCeeeCCCCc
Q 047519 706 RNLTEVESLDLSSNM 720 (892)
Q Consensus 706 ~~l~~L~~L~Ls~N~ 720 (892)
.++++|+.++++++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 778888888887653
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.2e-18 Score=176.03 Aligned_cols=109 Identities=20% Similarity=0.246 Sum_probs=55.0
Q ss_pred ccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccC
Q 047519 496 HKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS 575 (892)
Q Consensus 496 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 575 (892)
+++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 34444444444443334444555555555555555544344445555555555555555554444445555555555555
Q ss_pred CcCCCCCCCCCCCcCCCCccEEEcCCCCCcC
Q 047519 576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG 606 (892)
Q Consensus 576 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 606 (892)
|++++..+..+ ..+++|++|++++|++++
T Consensus 110 N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 110 NQLQSLPDGVF--DKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCCSC
T ss_pred CcCcccCHhHh--ccCCcCCEEECCCCccce
Confidence 55544433333 445555555555555553
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=2e-18 Score=174.51 Aligned_cols=181 Identities=16% Similarity=0.145 Sum_probs=125.1
Q ss_pred cEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCC
Q 047519 497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576 (892)
Q Consensus 497 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 576 (892)
+.++.+++.++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 445555555553 33332 347788888888887666666777788888888888887766666777788888888888
Q ss_pred cCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHH
Q 047519 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIE 656 (892)
Q Consensus 577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (892)
++++..+..+ ..+++|++|++++|++++..+.. +..
T Consensus 87 ~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~----------------------------------------- 122 (208)
T 2o6s_A 87 QLQSLPNGVF--DKLTQLKELALNTNQLQSLPDGV-FDK----------------------------------------- 122 (208)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT-----------------------------------------
T ss_pred cCCccCHhHh--cCccCCCEEEcCCCcCcccCHhH-hcc-----------------------------------------
Confidence 8776555444 67778888888888877543322 111
Q ss_pred HhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519 657 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 734 (892)
Q Consensus 657 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 734 (892)
+++|+.|++++|++++..+..+..+++|+.|+ +++|.+.+. +++|+.|+++.|+++|.+|.+++.++.
T Consensus 123 --l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~-l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 123 --LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW-LHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-CCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --CCcCCEEECCCCccceeCHHHhccCCCccEEE-ecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 55677788888888766666677778888887 888877643 346777788888888888877776654
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=8.2e-19 Score=202.55 Aligned_cols=196 Identities=20% Similarity=0.255 Sum_probs=127.0
Q ss_pred CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccC
Q 047519 437 QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVN 516 (892)
Q Consensus 437 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 516 (892)
+|+.|++++|.+++ +|..+. ++|++|++++|.++.++ . .+ ++|++|++++|.+++ +|. +..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~~ip-~---~l--------~~L~~L~Ls~N~l~~-ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALISLP-E---LP--------ASLEYLDACDNRLST-LPE-LPA 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCSCCC-C---CC--------TTCCEEECCSSCCSC-CCC-CCT
T ss_pred CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCcccc-c---cc--------CCCCEEEccCCCCCC-cch-hhc
Confidence 67777777777775 554332 66777777777777433 1 12 267777777777776 555 544
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccE
Q 047519 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRI 596 (892)
Q Consensus 517 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 596 (892)
+|++|++++|++++ +|. .+++|++|++++|++++ +|. .+++|++|+|++|++++ +|. + . ++|++
T Consensus 121 --~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--~--~~L~~ 184 (571)
T 3cvr_A 121 --SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--P--ESLEA 184 (571)
T ss_dssp --TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--C--TTCCE
T ss_pred --CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--h--CCCCE
Confidence 77777777777775 554 56777777777777776 454 46677777777777766 554 3 3 67777
Q ss_pred EEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCC
Q 047519 597 IDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGI 676 (892)
Q Consensus 597 L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 676 (892)
|+|++|+|+ .+|. +.. .| ....+.|+.|+|++|+|+ .+
T Consensus 185 L~Ls~N~L~-~lp~-~~~---~L------------------------------------~~~~~~L~~L~Ls~N~l~-~l 222 (571)
T 3cvr_A 185 LDVSTNLLE-SLPA-VPV---RN------------------------------------HHSEETEIFFRCRENRIT-HI 222 (571)
T ss_dssp EECCSSCCS-SCCC-CC-----------------------------------------------CCEEEECCSSCCC-CC
T ss_pred EECcCCCCC-chhh-HHH---hh------------------------------------hcccccceEEecCCCcce-ec
Confidence 777777777 5554 211 00 001334577777777777 56
Q ss_pred hhhhcCccccccccccCCCCCCCCcchhccCCCC
Q 047519 677 PEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTE 710 (892)
Q Consensus 677 p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~ 710 (892)
|..+..+++|+.|+ |++|+|++.+|..|..++.
T Consensus 223 p~~l~~l~~L~~L~-L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 223 PENILSLDPTCTII-LEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CGGGGGSCTTEEEE-CCSSSCCHHHHHHHHHHHH
T ss_pred CHHHhcCCCCCEEE-eeCCcCCCcCHHHHHHhhc
Confidence 77777777777777 7777777777777766544
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=7.3e-19 Score=179.10 Aligned_cols=158 Identities=24% Similarity=0.287 Sum_probs=120.5
Q ss_pred cEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccC
Q 047519 545 EVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNN 624 (892)
Q Consensus 545 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~ 624 (892)
+++++++|.++. +|..+. +.+++|++++|++++..+... +..+++|++|++++|++++..|..+ .+
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~L~~N~i~~i~~~~~-~~--------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAF-EG--------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCC-GGGCTTCCEEECCSSCCCEECTTTT-TT---------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhh-hccCCCCCEEECCCCcCCEECHHHh-CC---------
Confidence 355666665554 343332 345666666666655433221 2667777777777777775544322 11
Q ss_pred CCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchh
Q 047519 625 NSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSL 704 (892)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~ 704 (892)
+++|+.|+|++|++++..|..|.++++|++|+ |++|+|++..|..
T Consensus 80 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 80 ----------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLM-LRSNRITCVGNDS 124 (220)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE-CTTSCCCCBCTTS
T ss_pred ----------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEE-CCCCcCCeECHhH
Confidence 56788888888888888888899999999998 9999999988999
Q ss_pred ccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519 705 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 705 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 751 (892)
|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++.++.
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999999999999999999899999999999999999999987764
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.7e-18 Score=173.87 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=72.4
Q ss_pred hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 738 (892)
+++|+.|+|++|+|++..+..|.++++|+.|+ |++|+|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLL-LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCCCCCEEE-CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 45566666666666644445567788888888 88888888888888888999999999999988777788889999999
Q ss_pred ECCCCcCcccCC
Q 047519 739 NLSYNQFEGPIP 750 (892)
Q Consensus 739 ~ls~N~l~g~iP 750 (892)
++++|++.+..+
T Consensus 158 ~L~~N~~~c~c~ 169 (220)
T 2v9t_B 158 HLAQNPFICDCH 169 (220)
T ss_dssp ECCSSCEECSGG
T ss_pred EeCCCCcCCCCc
Confidence 999999886543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.4e-17 Score=177.47 Aligned_cols=172 Identities=23% Similarity=0.338 Sum_probs=134.1
Q ss_pred cCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCc
Q 047519 515 VNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRF 594 (892)
Q Consensus 515 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 594 (892)
..+++|++|++++|.+.+ ++ .+..+++|++|++++|++++..+ +..+++|+.|++++|++++. +. + ..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l--~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-SS-L--KDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-GG-G--TTCTTC
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-hh-h--ccCCCC
Confidence 356678888888888774 33 47778888888888888877544 77888888888888887652 22 3 778888
Q ss_pred cEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCC
Q 047519 595 RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG 674 (892)
Q Consensus 595 ~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 674 (892)
++|++++|++++. + . +. .+++|+.|++++|++++
T Consensus 115 ~~L~L~~n~i~~~-~-~-l~-------------------------------------------~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 115 KSLSLEHNGISDI-N-G-LV-------------------------------------------HLPQLESLYLGNNKITD 148 (291)
T ss_dssp CEEECTTSCCCCC-G-G-GG-------------------------------------------GCTTCCEEECCSSCCCC
T ss_pred CEEECCCCcCCCC-h-h-hc-------------------------------------------CCCCCCEEEccCCcCCc
Confidence 8888888888753 2 1 11 15678889999999885
Q ss_pred CChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519 675 GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747 (892)
Q Consensus 675 ~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 747 (892)
. ..+..+++|+.|+ +++|++++..| +..+++|+.|+|++|++++ +| .+..+++|+.|++++|+++.
T Consensus 149 ~--~~l~~l~~L~~L~-L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 149 I--TVLSRLTKLDTLS-LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C--GGGGGCTTCSEEE-CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred c--hhhccCCCCCEEE-ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 4 5788899999998 99999997655 8899999999999999985 45 48899999999999999875
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=8.8e-18 Score=185.12 Aligned_cols=178 Identities=25% Similarity=0.274 Sum_probs=110.3
Q ss_pred CEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc-CCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEc
Q 047519 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL 599 (892)
Q Consensus 521 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 599 (892)
+.++++++.++ .+|..+. +.++.|+|++|+|++..+..+. .+++|++|+|++|++++..+..+ ..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--cCCCCCCEEEC
Confidence 45566666665 3444332 3456666666666665555555 66666666666666655554444 56666666666
Q ss_pred CCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhh
Q 047519 600 SHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV 679 (892)
Q Consensus 600 s~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~ 679 (892)
++|++++..+.. +.+ +++|+.|+|++|+|++..|..
T Consensus 96 s~N~l~~~~~~~-~~~-------------------------------------------l~~L~~L~L~~N~i~~~~~~~ 131 (361)
T 2xot_A 96 SSNHLHTLDEFL-FSD-------------------------------------------LQALEVLLLYNNHIVVVDRNA 131 (361)
T ss_dssp CSSCCCEECTTT-TTT-------------------------------------------CTTCCEEECCSSCCCEECTTT
T ss_pred CCCcCCcCCHHH-hCC-------------------------------------------CcCCCEEECCCCcccEECHHH
Confidence 666666433321 111 456667777777777666677
Q ss_pred hcCccccccccccCCCCCCCCcchhc---cCCCCCCeeeCCCCcCCCCCccccCCCCC--CCEEECCCCcCccc
Q 047519 680 VGKLNLLKGLNNISHNNLTGDIPSLL---RNLTEVESLDLSSNMLVGHIPTQLTSLKY--LSVLNLSYNQFEGP 748 (892)
Q Consensus 680 ~~~l~~L~~L~~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~L~ls~N~l~g~ 748 (892)
|.++++|+.|+ |++|+|++..+..| ..+++|+.|||++|+|++..+..|..++. |+.|++++|++.+.
T Consensus 132 ~~~l~~L~~L~-L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 132 FEDMAQLQKLY-LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp TTTCTTCCEEE-CCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred hCCcccCCEEE-CCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 77777777777 77777775444444 56777777777777777655566666665 37778888877754
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=5e-17 Score=166.65 Aligned_cols=90 Identities=27% Similarity=0.288 Sum_probs=73.7
Q ss_pred hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 738 (892)
+++|+.|+|++|+|++..+..+..+++|+.|+ |++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~-Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF-MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEe-ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 45566677777777655566677888888888 9999888 778888899999999999999997777788889999999
Q ss_pred ECCCCcCcccCC
Q 047519 739 NLSYNQFEGPIP 750 (892)
Q Consensus 739 ~ls~N~l~g~iP 750 (892)
++++|++++..+
T Consensus 165 ~l~~N~~~c~c~ 176 (229)
T 3e6j_A 165 YLFGNPWDCECR 176 (229)
T ss_dssp ECTTSCBCTTBG
T ss_pred EeeCCCccCCcc
Confidence 999999988766
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.6e-17 Score=194.03 Aligned_cols=171 Identities=23% Similarity=0.337 Sum_probs=98.7
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCcc
Q 047519 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR 595 (892)
Q Consensus 516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 595 (892)
.+++|+.|++++|.+.. +| .+..+++|+.|+|++|++++..| +..+++|+.|+|++|.+.+. + .+ ..+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l--~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SL--KDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TS--TTCTTCC
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hh--ccCCCCC
Confidence 44556666666666552 33 35556666666666666665433 55666666666666666442 2 22 5566666
Q ss_pred EEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCC
Q 047519 596 IIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGG 675 (892)
Q Consensus 596 ~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 675 (892)
.|+|++|++++. | . +. .+++|+.|+|++|++++.
T Consensus 113 ~L~Ls~N~l~~l-~-~-l~-------------------------------------------~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 113 SLSLEHNGISDI-N-G-LV-------------------------------------------HLPQLESLYLGNNKITDI 146 (605)
T ss_dssp EEECTTSCCCCC-G-G-GG-------------------------------------------GCTTCSEEECCSSCCCCC
T ss_pred EEEecCCCCCCC-c-c-cc-------------------------------------------CCCccCEEECCCCccCCc
Confidence 666666666532 1 1 11 145566666666666643
Q ss_pred ChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519 676 IPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747 (892)
Q Consensus 676 ~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 747 (892)
..+..+++|+.|+ |++|+|++..| +..+++|+.|+|++|+|++. | .+..+++|+.|+|++|++++
T Consensus 147 --~~l~~l~~L~~L~-Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 147 --TVLSRLTKLDTLS-LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GGGGSCTTCSEEE-CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred --hhhcccCCCCEEE-CcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 4566666666666 66666665544 66666666666666666642 2 46666666666666666654
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=8.9e-17 Score=163.60 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=90.6
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
+|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 55666666666666556667777788888888888887777778888888888888888888777888888888888888
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcch
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGY 612 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 612 (892)
+|++++..|..+ ..+++|+.|++++|.+++..+..+
T Consensus 138 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~ 173 (220)
T 2v70_A 138 DNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYLAW 173 (220)
T ss_dssp TSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGGHH
T ss_pred CCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCchHH
Confidence 888887777766 778888888888888887665443
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=1.4e-16 Score=162.09 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=103.2
Q ss_pred CcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCC
Q 047519 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541 (892)
Q Consensus 462 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 541 (892)
++++.|++++|.++++.+..+..+. +|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~--------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYK--------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCT--------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCC--------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 3455555555555555544444444 66777777777776667778888888888888888886655667888
Q ss_pred CCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL 608 (892)
Q Consensus 542 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 608 (892)
++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++....
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSG
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCC
Confidence 888888888888888878888888888888888888887776655 77888999999999887543
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=6.2e-17 Score=178.29 Aligned_cols=179 Identities=24% Similarity=0.241 Sum_probs=110.6
Q ss_pred cEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccccc-CCCCCCEEEccCCCCCCCCCccccCCCC
Q 047519 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV-NSCNLTNLNLNGNRLEGPLPLSLVNCHH 543 (892)
Q Consensus 465 ~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 543 (892)
+.++++++.++.++. .+.. .++.|++++|++++..+..+. .+++|++|+|++|++++..+..|..+++
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~----------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPS----------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCT----------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcCccCc-cCCC----------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 567777777766432 2221 456677777777766666665 6777777777777777655566777777
Q ss_pred CcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhccc
Q 047519 544 LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGN 623 (892)
Q Consensus 544 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~ 623 (892)
|++|+|++|++++..+..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|+|++ +|...+..+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~-l~~~~~~~~------- 159 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISR-FPVELIKDG------- 159 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCS-CCGGGTC---------
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCe-eCHHHhcCc-------
Confidence 7777777777766555566677777777777777766555555 666777777777777663 333322100
Q ss_pred CCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccc--ccccccCCCCCC
Q 047519 624 NNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLL--KGLNNISHNNLT 698 (892)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L--~~L~~Ls~N~l~ 698 (892)
..+++|+.|||++|+|++..+..+..++.+ +.|+ |++|.+.
T Consensus 160 ---------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~-l~~N~~~ 202 (361)
T 2xot_A 160 ---------------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY-LHNNPLE 202 (361)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEE-CCSSCEE
T ss_pred ---------------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEE-ecCCCcc
Confidence 014556666666666665555555555552 5565 6666665
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.7e-16 Score=168.96 Aligned_cols=188 Identities=24% Similarity=0.354 Sum_probs=102.1
Q ss_pred CCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEcc
Q 047519 365 LILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLS 444 (892)
Q Consensus 365 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls 444 (892)
+..+.+..+.+++..+ +..+++|++|++++|.+ .. ++....+++|++|++++|+++.++. +..+++|++|+++
T Consensus 26 ~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i--~~-~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI--KS-VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCC--CC-CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HHHHHhcCCCcccccc---hhhcCcccEEEccCCCc--cc-ChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence 3344555555554433 34567777777777733 22 2222256666666666666666655 6666666666666
Q ss_pred CCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEE
Q 047519 445 KNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524 (892)
Q Consensus 445 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 524 (892)
+|.+++ ++. +..+ ++|++|++++|++++. ..+..+++|++|+
T Consensus 99 ~n~l~~-~~~-l~~l--~~L~~L~L~~n~i~~~----------------------------------~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 99 ENKVKD-LSS-LKDL--KKLKSLSLEHNGISDI----------------------------------NGLVHLPQLESLY 140 (291)
T ss_dssp SSCCCC-GGG-GTTC--TTCCEEECTTSCCCCC----------------------------------GGGGGCTTCCEEE
T ss_pred CCcCCC-Chh-hccC--CCCCEEECCCCcCCCC----------------------------------hhhcCCCCCCEEE
Confidence 666654 222 4444 5555555555555442 2344455555555
Q ss_pred ccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCC
Q 047519 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEF 604 (892)
Q Consensus 525 L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 604 (892)
+++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++. +. + ..+++|+.|++++|++
T Consensus 141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~-l--~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RA-L--AGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GG-G--TTCTTCSEEEEEEEEE
T ss_pred ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hh-h--ccCCCCCEEECcCCcc
Confidence 555555532 345555555555555555555333 55555555555555555432 21 2 4555556666665555
Q ss_pred c
Q 047519 605 T 605 (892)
Q Consensus 605 ~ 605 (892)
+
T Consensus 213 ~ 213 (291)
T 1h6t_A 213 L 213 (291)
T ss_dssp E
T ss_pred c
Confidence 4
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.8e-16 Score=185.14 Aligned_cols=151 Identities=22% Similarity=0.290 Sum_probs=87.9
Q ss_pred hhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccc
Q 047519 432 LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS 511 (892)
Q Consensus 432 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~ 511 (892)
+..+++|+.|+|++|.+.+..+ +..+ ++|+.|+|++|.+++.. .+..+ ++|+.|+|++|.+.+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l--~~L~~L~Ls~N~l~~l~--~l~~l--------~~L~~L~Ls~N~l~~l-- 124 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNL--KNLGWLFLDENKIKDLS--SLKDL--------KKLKSLSLEHNGISDI-- 124 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGC--TTCCEEECCSSCCCCCT--TSTTC--------TTCCEEECTTSCCCCC--
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccC--CCCCEEECcCCCCCCCh--hhccC--------CCCCEEEecCCCCCCC--
Confidence 4445555555555555554333 3333 55555555555554421 22222 2556666666666542
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCC
Q 047519 512 QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPF 591 (892)
Q Consensus 512 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 591 (892)
..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+..| +..+++|+.|+|++|++++. + .+ ..+
T Consensus 125 ~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l--~~l 196 (605)
T 1m9s_A 125 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-AL--AGL 196 (605)
T ss_dssp GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GG--TTC
T ss_pred ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HH--ccC
Confidence 2356666777777777777643 456667777777777777766544 66677777777777776553 2 22 566
Q ss_pred CCccEEEcCCCCCcC
Q 047519 592 PRFRIIDLSHNEFTG 606 (892)
Q Consensus 592 ~~L~~L~Ls~N~l~~ 606 (892)
++|+.|+|++|++++
T Consensus 197 ~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 197 KNLDVLELFSQECLN 211 (605)
T ss_dssp TTCSEEECCSEEEEC
T ss_pred CCCCEEEccCCcCcC
Confidence 777777777777664
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=3e-17 Score=163.27 Aligned_cols=156 Identities=19% Similarity=0.287 Sum_probs=118.5
Q ss_pred CEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEE
Q 047519 569 QVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI 648 (892)
Q Consensus 569 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (892)
+++++++|.+ +.+|..+ ..+|++|++++|++++..+...+..
T Consensus 11 ~~l~~s~~~l-~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~--------------------------------- 52 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDI----PLHTTELLLNDNELGRISSDGLFGR--------------------------------- 52 (192)
T ss_dssp TEEECTTSCC-SSCCSCC----CTTCSEEECCSCCCCSBCCSCSGGG---------------------------------
T ss_pred CEEEcCCCCc-CcCccCC----CCCCCEEECCCCcCCccCCcccccc---------------------------------
Confidence 5667777766 3445433 2378888888888876555332221
Q ss_pred ccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccc
Q 047519 649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ 728 (892)
Q Consensus 649 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 728 (892)
+++|+.|+|++|+|++..|..|.++++|++|+ |++|+|++..|..|+++++|++|+|++|++++.+|..
T Consensus 53 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 53 ----------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQ-LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp ----------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE-CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred ----------CCCCCEEECCCCCCCCcCHhHcCCcccCCEEE-CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence 66788999999999988899999999999998 9999999888888999999999999999999999999
Q ss_pred cCCCCCCCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 047519 729 LTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP 773 (892)
Q Consensus 729 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 773 (892)
|..+++|++|++++|+++|.+|.......+....+.++...|+.|
T Consensus 122 ~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 122 FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp STTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred hhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999999999999999999887743211112233344555555544
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=3.7e-16 Score=160.12 Aligned_cols=156 Identities=20% Similarity=0.102 Sum_probs=99.0
Q ss_pred ccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519 415 LFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL 494 (892)
Q Consensus 415 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~ 494 (892)
.+.++.+++.++.+|..+. ++|++|++++|.+++..|..+..+ ++|++|++++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~N~l~------------------- 77 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSL--INLKELYLGSNQLG------------------- 77 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCC-------------------
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCc--cCCcEEECCCCCCC-------------------
Confidence 4456666666666665332 556666666666665555555544 55555555555444
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+++. +|..+..+++|++|+|+
T Consensus 78 -------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 78 -------------ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALD 143 (229)
T ss_dssp -------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECC
T ss_pred -------------CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECC
Confidence 3333445566677777777777776555566777777777777777764 56667777777777777
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP 609 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 609 (892)
+|++++..+..+ ..+++|+.|++++|.+++..+
T Consensus 144 ~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 144 QNQLKSIPHGAF--DRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SSCCCCCCTTTT--TTCTTCCEEECTTSCBCTTBG
T ss_pred CCcCCccCHHHH--hCCCCCCEEEeeCCCccCCcc
Confidence 777765555444 667778888888887776544
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.5e-17 Score=199.28 Aligned_cols=227 Identities=16% Similarity=0.139 Sum_probs=93.9
Q ss_pred CCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccccc
Q 047519 436 HQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV 515 (892)
Q Consensus 436 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~ 515 (892)
+.++.|+|.+|.+... +. ..|+.++|+.|.+. .+++..|.+. ..+..+.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~-------~~l~~l~Ls~~~i~----------------------~~~~~~n~~~-~~~~~~~ 221 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQ-------ALLQHKKLSQYSID----------------------EDDDIENRMV-MPKDSKY 221 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccceEEeeCCCCCcc-hh-------hHhhcCccCccccc----------------------Ccccccccee-cChhhhc
Confidence 4566677777766542 22 33444555554433 3344444444 4455666
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCcc
Q 047519 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR 595 (892)
Q Consensus 516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 595 (892)
.++.|+.|+|++|.+. .+|..+..+++|++|+|++|+|+ .+|..|..+++|++|+|++|.|+ .+|..+ ..+++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLK 296 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCS
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCC
Confidence 6677777777777776 55655666777777777777776 46666777777777777777776 556555 6667777
Q ss_pred EEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCC
Q 047519 596 IIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGG 675 (892)
Q Consensus 596 ~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 675 (892)
+|+|++|.|+ .+|..+ ++ +++|+.|+|++|.|++.
T Consensus 297 ~L~L~~N~l~-~lp~~~-~~-------------------------------------------l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 297 YFYFFDNMVT-TLPWEF-GN-------------------------------------------LCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp EEECCSSCCC-CCCSST-TS-------------------------------------------CTTCCCEECTTSCCCSH
T ss_pred EEECCCCCCC-ccChhh-hc-------------------------------------------CCCccEEeCCCCccCCC
Confidence 7777777765 555442 21 45666777777777777
Q ss_pred ChhhhcCcccc-ccccccCCCCCCCCcchhccCCCCCCeeeCCCC--------cCCCCCccccCCCCCCCEEECCCCcCc
Q 047519 676 IPEVVGKLNLL-KGLNNISHNNLTGDIPSLLRNLTEVESLDLSSN--------MLVGHIPTQLTSLKYLSVLNLSYNQFE 746 (892)
Q Consensus 676 ~p~~~~~l~~L-~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~~L~~L~ls~N~l~ 746 (892)
+|..+..+... ..|+ |++|.++|.+|.. |+.|++++| .+.+.++..+..+..+....+++|-+.
T Consensus 332 ~p~~~~~~~~~~~~l~-l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 332 FLKILTEKSVTGLIFY-LRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred ChHHHhhcchhhhHHh-hccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 77666554322 2355 7777777777653 445556665 444455555666777777788888776
Q ss_pred ccCC
Q 047519 747 GPIP 750 (892)
Q Consensus 747 g~iP 750 (892)
+...
T Consensus 405 ~~~~ 408 (727)
T 4b8c_D 405 QHYA 408 (727)
T ss_dssp GGGC
T ss_pred cccC
Confidence 4443
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.8e-19 Score=209.38 Aligned_cols=204 Identities=11% Similarity=0.002 Sum_probs=121.0
Q ss_pred cCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCccc-------------CCcchhhhhhcccCCCCCCCEEe-cC
Q 047519 112 SQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFA-------------FSDCFQLDVKTTFLHDDLEEEIY-MT 177 (892)
Q Consensus 112 ~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~-------------~~~~~p~~l~~~~~~l~~L~~L~-L~ 177 (892)
..+++|+.|+|++|.+. .+|..|+ +|++|+.|+++++. ..+..|..++ ++++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~--~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~----~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELE--SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ----YFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHH--HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH----HHHHHHHHCGGG
T ss_pred ccCccceeccCChhhHH-hhHHHHH--HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH----HHHhcccCcchh
Confidence 56778888888888775 7788887 88888888876643 2344455555 555555555 33
Q ss_pred CccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCcccc
Q 047519 178 QLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGL 257 (892)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~ 257 (892)
.+.+ .+|+.+.+++| .++... ...|++|++++|.+.+
T Consensus 419 ~n~~------------~~L~~l~l~~n--~i~~l~----------------------~~~L~~L~Ls~n~l~~------- 455 (567)
T 1dce_A 419 AAYL------------DDLRSKFLLEN--SVLKME----------------------YADVRVLHLAHKDLTV------- 455 (567)
T ss_dssp HHHH------------HHHHHHHHHHH--HHHHHH----------------------HTTCSEEECTTSCCSS-------
T ss_pred hccc------------chhhhhhhhcc--cccccC----------------------ccCceEEEecCCCCCC-------
Confidence 3322 23333344444 222110 0246667777665543
Q ss_pred CCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCC
Q 047519 258 LFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRG 337 (892)
Q Consensus 258 ~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~ 337 (892)
+| .++.+++|++|+|++|.++ .+|..++.+++|+.|+++ +|.+++ +|.+ +.
T Consensus 456 ---------------lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls---~N~l~~-lp~l-------~~ 506 (567)
T 1dce_A 456 ---------------LC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS---DNALEN-VDGV-------AN 506 (567)
T ss_dssp ---------------CC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC---SSCCCC-CGGG-------TT
T ss_pred ---------------Cc--CccccccCcEeecCccccc-ccchhhhcCCCCCEEECC---CCCCCC-Cccc-------CC
Confidence 12 2455666666777777666 566666666677777776 666654 4556 66
Q ss_pred CCCcCEEEccCCcCCcCC-CccccCCCCCCEEECcCCcCCCccCh--hhcCCCCCCCEEE
Q 047519 338 RRHYAEPHFSSNQLSGSI-PSSVYELENLILLRLPSNRLSGTTEL--YDFAKLKNLKWLF 394 (892)
Q Consensus 338 l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~ 394 (892)
+++|++|++++|.+++.. |..++.+++|+.|+|++|.+++..+. ..+..+++|+.|+
T Consensus 507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 666666666666666554 66666666666666666666644331 1122355666654
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.1e-16 Score=159.99 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=57.6
Q ss_pred hhhheeeecCCCcCCCCChhhhcCccccccccccCCCC-CCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCE
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNN-LTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 737 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 737 (892)
+++|+.|++++|++++..|..++.+++|++|+ +++|+ ++ .+| .+.++++|+.|++++|++++ ++ .+..+++|++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~-L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSID-LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE-CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEE-ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence 45566666666666666666777777777777 88777 44 555 57778888888888888875 33 6777788888
Q ss_pred EECCCCcCcc
Q 047519 738 LNLSYNQFEG 747 (892)
Q Consensus 738 L~ls~N~l~g 747 (892)
|++++|++.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 8888887753
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=8.3e-17 Score=168.67 Aligned_cols=168 Identities=20% Similarity=0.226 Sum_probs=97.2
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEE
Q 047519 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIID 598 (892)
Q Consensus 519 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 598 (892)
++..+++++|.+++ ++ .+..+++|++|++++|+++. +| .+..+++|+.|++++|++++..+ + ..+++|++|+
T Consensus 20 ~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~L~ 91 (263)
T 1xeu_A 20 NAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEELS 91 (263)
T ss_dssp HHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEEE
T ss_pred HHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCEEE
Confidence 34444455555542 22 34445555555555555544 22 34455555555555555544333 2 4555555555
Q ss_pred cCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChh
Q 047519 599 LSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPE 678 (892)
Q Consensus 599 Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~ 678 (892)
+++|++++ +|... .+.|+.|++++|++++ +|
T Consensus 92 L~~N~l~~-l~~~~----------------------------------------------~~~L~~L~L~~N~l~~-~~- 122 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP----------------------------------------------SACLSRLFLDNNELRD-TD- 122 (263)
T ss_dssp CCSSCCSC-CTTCC----------------------------------------------CSSCCEEECCSSCCSB-SG-
T ss_pred CCCCccCC-cCccc----------------------------------------------cCcccEEEccCCccCC-Ch-
Confidence 55555553 22100 1245566666666663 33
Q ss_pred hhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCccc
Q 047519 679 VVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 748 (892)
Q Consensus 679 ~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 748 (892)
.+..+++|+.|+ +++|++++. | .++.+++|+.|+|++|++++. ..+..+++|+.|++++|++++.
T Consensus 123 ~l~~l~~L~~L~-Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 123 SLIHLKNLEILS-IRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGTTCTTCCEEE-CTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hhcCcccccEEE-CCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 466777777776 777777743 3 577777778888888877755 5677777888888888877754
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=9.1e-19 Score=203.41 Aligned_cols=140 Identities=19% Similarity=0.124 Sum_probs=81.9
Q ss_pred CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCC-------------CCCCCchhhhhhCCCcccEEE-ccCCCCCC
Q 047519 411 SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNR-------------IHGRISSWMWDLGITALYYLD-LSNNFLTN 476 (892)
Q Consensus 411 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~~~L~~L~-Ls~n~l~~ 476 (892)
..++|+.|+|++|.++.+|..++.+++|+.|++++|. +.+.+|..+..+ ++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l--~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF--STLKAVDPMRAAYLD- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH--HHHHHHCGGGHHHHH-
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH--HhcccCcchhhcccc-
Confidence 4567777788888888888888888888888887664 445566666666 7777776 5554432
Q ss_pred CCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCC
Q 047519 477 IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND 556 (892)
Q Consensus 477 ~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 556 (892)
.|..+.+++|.++...+. .|+.|++++|.+++ +|. +..+++|+.|+|++|+|+
T Consensus 424 ------------------~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~- 476 (567)
T 1dce_A 424 ------------------DLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR- 476 (567)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-
T ss_pred ------------------hhhhhhhhcccccccCcc------CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-
Confidence 334444444444432211 35555555555553 343 555555555555555555
Q ss_pred CcchhccCCCCCCEEEccCCcCCC
Q 047519 557 NFPNWLEILPELQVLILRSNRFWG 580 (892)
Q Consensus 557 ~~p~~~~~l~~L~~L~L~~N~l~~ 580 (892)
.+|..++.+++|+.|+|++|++++
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ccchhhhcCCCCCEEECCCCCCCC
Confidence 245455555555555555554443
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2e-16 Score=165.79 Aligned_cols=168 Identities=21% Similarity=0.262 Sum_probs=135.4
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
.+..+++++|.+++.. .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4455566666666433 4667889999999999988 455 68889999999999999988544 8899999999999
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (892)
+|++++. |.. .. ++|+.|++++|++++. | . +.
T Consensus 94 ~N~l~~l-~~~---~~-~~L~~L~L~~N~l~~~-~-~-l~---------------------------------------- 125 (263)
T 1xeu_A 94 RNRLKNL-NGI---PS-ACLSRLFLDNNELRDT-D-S-LI---------------------------------------- 125 (263)
T ss_dssp SSCCSCC-TTC---CC-SSCCEEECCSSCCSBS-G-G-GT----------------------------------------
T ss_pred CCccCCc-Ccc---cc-CcccEEEccCCccCCC-h-h-hc----------------------------------------
Confidence 9999763 332 22 8999999999999853 2 1 11
Q ss_pred HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC
Q 047519 655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH 724 (892)
Q Consensus 655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 724 (892)
.+++|+.|++++|++++. | .++.+++|+.|+ +++|++++. ..+..+++|+.|++++|.+++.
T Consensus 126 ---~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~-L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 126 ---HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLD-LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEE-CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ---CcccccEEECCCCcCCCC-h-HHccCCCCCEEE-CCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 167899999999999954 4 689999999998 999999976 6789999999999999999865
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=9.2e-16 Score=153.31 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=70.5
Q ss_pred CCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecC
Q 047519 412 FPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFD 491 (892)
Q Consensus 412 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~ 491 (892)
+++|++|++++|.++.+| .+..+++|++|++++|.+.. +..+..+ ++|++|++++|.+++..+..+..+.
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~----- 112 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YNPISGL--SNLERLRIMGKDVTSDKIPNLSGLT----- 112 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTC--TTCCEEEEECTTCBGGGSCCCTTCT-----
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--chhhhcC--CCCCEEEeECCccCcccChhhcCCC-----
Confidence 445555555555555555 45666666666666665542 2234444 5555555555555543333333332
Q ss_pred CCCcccEEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCE
Q 047519 492 SNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQV 570 (892)
Q Consensus 492 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 570 (892)
+|++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.
T Consensus 113 ---~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 113 ---SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp ---TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred ---CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence 44444444444444444444444444444444444 32 222 34444444444444444443 11 3334444444
Q ss_pred EEccCCcC
Q 047519 571 LILRSNRF 578 (892)
Q Consensus 571 L~L~~N~l 578 (892)
|++++|++
T Consensus 186 L~l~~N~i 193 (197)
T 4ezg_A 186 LYAFSQTI 193 (197)
T ss_dssp EEECBC--
T ss_pred EEeeCccc
Confidence 44444443
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.9e-16 Score=189.86 Aligned_cols=226 Identities=21% Similarity=0.170 Sum_probs=116.6
Q ss_pred CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeec
Q 047519 411 SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNF 490 (892)
Q Consensus 411 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l 490 (892)
..+.++.|+|..|.+...+.. .|+.++|+.|.|.+. +++.|.+. ..+..+..+.
T Consensus 171 s~~~~~~l~L~~n~~~~~~~~-----~l~~l~Ls~~~i~~~----------------~~~~n~~~-~~~~~~~~l~---- 224 (727)
T 4b8c_D 171 STPLTPKIELFANGKDEANQA-----LLQHKKLSQYSIDED----------------DDIENRMV-MPKDSKYDDQ---- 224 (727)
T ss_dssp -------------------------------------------------------------------------CCC----
T ss_pred cCCccceEEeeCCCCCcchhh-----HhhcCccCcccccCc----------------ccccccee-cChhhhccCC----
Confidence 346788999999988876543 355666666665432 22233333 2333444444
Q ss_pred CCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCE
Q 047519 491 DSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQV 570 (892)
Q Consensus 491 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 570 (892)
.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|+|+ .+|..|..+++|++
T Consensus 225 ----~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 225 ----LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp ----CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred ----CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 7788888888887 56666778999999999999999 88999999999999999999999 57999999999999
Q ss_pred EEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEcc
Q 047519 571 LILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKG 650 (892)
Q Consensus 571 L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (892)
|+|++|.++ .+|..+ ..+++|++|+|++|.|++.+|..+ ...
T Consensus 298 L~L~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~-~~~---------------------------------- 339 (727)
T 4b8c_D 298 FYFFDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKIL-TEK---------------------------------- 339 (727)
T ss_dssp EECCSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHHH-HHH----------------------------------
T ss_pred EECCCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHHH-hhc----------------------------------
Confidence 999999996 677766 889999999999999998887543 211
Q ss_pred chhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCC--------CCCCCcchhccCCCCCCeeeCCCCcCC
Q 047519 651 IDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHN--------NLTGDIPSLLRNLTEVESLDLSSNMLV 722 (892)
Q Consensus 651 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N--------~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 722 (892)
......++|++|.+++.+|..+ +.|+ +++| .|.+.++..+.++..++...+++|-+.
T Consensus 340 --------~~~~~~l~l~~N~l~~~~p~~l------~~l~-l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 340 --------SVTGLIFYLRDNRPEIPLPHER------RFIE-INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------HHHHHHHHHHHCCCCCCCCCC------------------------------------------------CCC
T ss_pred --------chhhhHHhhccCcccCcCcccc------ceeE-eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 1112347788899988888644 4455 6666 555555566677777888888888875
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=9e-15 Score=145.33 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=89.2
Q ss_pred cccEEECCCCccCccccc-cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519 495 THKVLDMRMNNFNGKISQ-KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 573 (892)
.+++|++++|.+++..+. .|..+++|++|++++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 456677777777655553 4777888888888888888777888888888888888888888877777888888888888
Q ss_pred cCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCc
Q 047519 574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPT 610 (892)
Q Consensus 574 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 610 (892)
++|++++..|..+ ..+++|++|++++|.+++..+.
T Consensus 110 ~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcc
Confidence 8888887777766 7788888888888888876554
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=2.7e-15 Score=163.00 Aligned_cols=258 Identities=10% Similarity=0.033 Sum_probs=156.0
Q ss_pred CCCCcEEEccCCCCC--cCCCccccCCCCCcEEecCccccccceeecc--chhhhhhccCC--------CCCcCEEEccC
Q 047519 281 LDKRRSITGYVFNFA--GGPINWKSTLQSTVVLSTTEAEYMAITKAVK--EAIWLQVFVRG--------RRHYAEPHFSS 348 (892)
Q Consensus 281 l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p--~l~~l~l~~~~--------l~~L~~L~Ls~ 348 (892)
+++|++|+|++|++. ...+.. ++.++.+.+. .+ .+| .| .+ +++|++|++..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~---~~----~I~~~aF-------~~~~~~~~~g~~~L~~l~L~~ 110 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYM---AN----FVPAYAF-------SNVVNGVTKGKQTLEKVILSE 110 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEEC---TT----EECTTTT-------EEEETTEEEECTTCCC-CBCT
T ss_pred hccCeEEecCcceeEEecCcccc---cccccccccc---cc----ccCHHHh-------cccccccccccCCCcEEECCc
Confidence 788999999999877 222211 2223344443 33 233 44 45 88999999988
Q ss_pred CcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCC--CCCccccCCC-CCCCcc-EEEccCCC
Q 047519 349 NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL--SLSTKLKVNS-SFPNLF-GLGLSACN 424 (892)
Q Consensus 349 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~-~l~~L~-~L~L~~n~ 424 (892)
.++...+.+|.++++|+.+++++|.++ .++...|..+.++..+.+..+.. .........+ .+.+|+ .+.+...
T Consensus 111 -~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~- 187 (329)
T 3sb4_A 111 -KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM- 187 (329)
T ss_dssp -TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT-
T ss_pred -cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC-
Confidence 787677778889999999999999887 45557888877777776655310 0011111112 445555 4444332
Q ss_pred CCCcchhhh----CCCCccEEEccCCCCCCCCchhhh-hhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEE
Q 047519 425 ISEFPDILR----TLHQLQWFNLSKNRIHGRISSWMW-DLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVL 499 (892)
Q Consensus 425 l~~lp~~l~----~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L 499 (892)
..++..+. ...+++.+.+.++-.. .....+. .+ ++|+.+++++|+++.+....|..+. +|+.+
T Consensus 188 -~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~--~~L~~l~L~~n~i~~I~~~aF~~~~--------~L~~l 255 (329)
T 3sb4_A 188 -GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYM--PNLVSLDISKTNATTIPDFTFAQKK--------YLLKI 255 (329)
T ss_dssp -CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHC--TTCCEEECTTBCCCEECTTTTTTCT--------TCCEE
T ss_pred -CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhc--CCCeEEECCCCCcceecHhhhhCCC--------CCCEE
Confidence 23333221 2455666666655221 1111121 23 7777777777777766666655544 66777
Q ss_pred ECCCCccCccccccccCCCCCC-EEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEE
Q 047519 500 DMRMNNFNGKISQKFVNSCNLT-NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572 (892)
Q Consensus 500 ~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 572 (892)
++.+| +....+..|.++.+|+ .+++.+ .++...+.+|.+|++|+.+++++|+++.+.+..|.++++|+.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77766 5555556677777777 777766 55545556677777777777777777666666677777777665
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.1e-14 Score=141.34 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=31.3
Q ss_pred CCCcEEEccCCCCC-CCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519 542 HHLEVLDVGNNQIN-DNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL 608 (892)
Q Consensus 542 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 608 (892)
++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|++++|++++.+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCSCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCchHH
Confidence 44555555555554 33444444555555555555555433 222 44555555555555555433
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1e-14 Score=141.59 Aligned_cols=138 Identities=24% Similarity=0.268 Sum_probs=117.4
Q ss_pred CCCCCCEEEccCCcCC-CCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccc
Q 047519 564 ILPELQVLILRSNRFW-GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYE 642 (892)
Q Consensus 564 ~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (892)
..++|+.|++++|.++ +.+|..+ ..+++|++|++++|.+++. + . +.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l~~n~l~~~-~-~-~~---------------------------- 68 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLINVGLISV-S-N-LP---------------------------- 68 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCC--GGGGGCCEEEEESSCCCCC-S-S-CC----------------------------
T ss_pred CcccCCEEECCCCCCChhhHHHHH--HhCCCCCEEeCcCCCCCCh-h-h-hc----------------------------
Confidence 4578999999999998 6777765 8889999999999999855 2 2 11
Q ss_pred eEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCc-chhccCCCCCCeeeCCCCcC
Q 047519 643 SIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI-PSLLRNLTEVESLDLSSNML 721 (892)
Q Consensus 643 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l 721 (892)
.+++|+.|++++|++++.+|..+..+++|+.|+ +++|++++.. +..+..+++|+.|++++|++
T Consensus 69 ---------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 69 ---------------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN-LSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp ---------------CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE-CBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred ---------------cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe-ccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 167899999999999988999999999999999 9999999643 37899999999999999999
Q ss_pred CCCCc---cccCCCCCCCEEECCCCcCcccCCC
Q 047519 722 VGHIP---TQLTSLKYLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 722 ~~~ip---~~l~~l~~L~~L~ls~N~l~g~iP~ 751 (892)
++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 133 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 133 TNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp GTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred cchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 97665 58999999999999999987 4453
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=144.49 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=106.0
Q ss_pred CEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEE
Q 047519 569 QVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI 648 (892)
Q Consensus 569 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (892)
+++++++|.++ .+|..+ .++|++|++++|+++ .+|.. +.
T Consensus 13 ~~l~~~~~~l~-~ip~~~----~~~l~~L~L~~n~i~-~ip~~-~~---------------------------------- 51 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI----PRDVTELYLDGNQFT-LVPKE-LS---------------------------------- 51 (193)
T ss_dssp TEEECTTSCCS-SCCSCC----CTTCCEEECCSSCCC-SCCGG-GG----------------------------------
T ss_pred CEEEcCCCCCC-cCCCCC----CCCCCEEECCCCcCc-hhHHH-hh----------------------------------
Confidence 45666666664 344332 257888888888887 55533 22
Q ss_pred ccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccc
Q 047519 649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ 728 (892)
Q Consensus 649 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 728 (892)
.+++|+.|+|++|+|++..|..|.++++|+.|+ |++|+|++..|..|.++++|+.|+|++|+|++..+..
T Consensus 52 ---------~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~-Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 121 (193)
T 2wfh_A 52 ---------NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI-LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121 (193)
T ss_dssp ---------GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred ---------cccCCCEEECCCCcCCEeCHhHccCCCCCCEEE-CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence 166788999999999988888899999999998 9999999888889999999999999999999777778
Q ss_pred cCCCCCCCEEECCCCcCcccCC
Q 047519 729 LTSLKYLSVLNLSYNQFEGPIP 750 (892)
Q Consensus 729 l~~l~~L~~L~ls~N~l~g~iP 750 (892)
|..+++|+.|++++|++.+..+
T Consensus 122 ~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 122 FNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TTTCTTCCEEECCSSCEECSGG
T ss_pred hhcCccccEEEeCCCCeecCCc
Confidence 9999999999999999987554
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=6.6e-14 Score=137.14 Aligned_cols=92 Identities=26% Similarity=0.290 Sum_probs=78.4
Q ss_pred hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 738 (892)
+++|+.|++++|++++..+..++.+++|+.|+ +++|+|++..+..|+++++|+.|+|++|++++..+..+..+++|++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY-LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEE-CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence 56677888888888866666778899999998 99999998777788999999999999999997666667889999999
Q ss_pred ECCCCcCcccCCC
Q 047519 739 NLSYNQFEGPIPQ 751 (892)
Q Consensus 739 ~ls~N~l~g~iP~ 751 (892)
++++|+++|.+|.
T Consensus 130 ~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 130 WLHTNPWDCSCPR 142 (177)
T ss_dssp ECCSSCBCCCHHH
T ss_pred EecCCCeeccCcc
Confidence 9999999988773
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=2.1e-14 Score=136.28 Aligned_cols=80 Identities=25% Similarity=0.288 Sum_probs=36.7
Q ss_pred hheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCC-cchhccCCCCCCeeeCCCCcCCCCCc---cccCCCCCCC
Q 047519 661 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD-IPSLLRNLTEVESLDLSSNMLVGHIP---TQLTSLKYLS 736 (892)
Q Consensus 661 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~~L~ 736 (892)
.|+.|++++|++++.+|..++.+++|++|+ +++|++++. .|..++++++|+.|++++|++++..+ ..+..+++|+
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLN-LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEE-CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEE-CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 334444444444433444444444444454 555554432 22444555555555555555544333 3444455555
Q ss_pred EEECC
Q 047519 737 VLNLS 741 (892)
Q Consensus 737 ~L~ls 741 (892)
.||++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 55543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=3.3e-13 Score=132.17 Aligned_cols=133 Identities=17% Similarity=0.151 Sum_probs=106.7
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCC
Q 047519 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHH 543 (892)
Q Consensus 464 L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 543 (892)
.+.+++++|.++..+...+. +++.|++++|++++..+..|..+++|++|++++|++++..+..+..+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPS-----------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCCCC-----------CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence 45666777766655432221 6678888888888766677788899999999999999776777889999
Q ss_pred CcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519 544 LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP 609 (892)
Q Consensus 544 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 609 (892)
|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++..|
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 9999999999998777778899999999999999986655544 778999999999999987765
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=1.8e-14 Score=156.53 Aligned_cols=201 Identities=11% Similarity=0.113 Sum_probs=133.8
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcC----CCCCCCCCCCcCCC
Q 047519 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF----WGPIGDNTTIVPFP 592 (892)
Q Consensus 517 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~~~l~ 592 (892)
+++|+.|+|.+ .++...+.+|.+|++|+.|++++|.+....+.+|.++.++..+.+..+.. ... ....+..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i--~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW--EHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT--TTSCEEESC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc--ccccccccc
Confidence 88888888888 77756666788888888888888888777777777777777666655321 111 112224455
Q ss_pred Ccc-EEEcCCCCCcCcCCcchhhh---hhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh-HHHhhhhheeeec
Q 047519 593 RFR-IIDLSHNEFTGVLPTGYLDN---FKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ-IERILTIFMTIDL 667 (892)
Q Consensus 593 ~L~-~L~Ls~N~l~~~~p~~~~~~---l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~LdL 667 (892)
.|+ .+++.... .++...+.. ...+..+...+. +...... +...+++|+.++|
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~--------------------l~~~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGK--------------------LDNADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEEC--------------------CCHHHHHHHHHHCTTCCEEEC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeee--------------------ecHHHHHHHHHhcCCCeEEEC
Confidence 555 44444321 222222111 111222111110 0001111 1223688999999
Q ss_pred CCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCC-eeeCCCCcCCCCCccccCCCCCCCEEECCCCcCc
Q 047519 668 SSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVE-SLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746 (892)
Q Consensus 668 s~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 746 (892)
++|+++...+..|.++.+|+.++ +++| ++..-+.+|.++++|+ .+++.+ .++..-+.+|.++++|+.+++++|+++
T Consensus 234 ~~n~i~~I~~~aF~~~~~L~~l~-l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKKYLLKIK-LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTBCCCEECTTTTTTCTTCCEEE-CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred CCCCcceecHhhhhCCCCCCEEE-CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 99999966667799999999998 9998 8766778899999999 999998 787677789999999999999999987
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=3.3e-13 Score=133.92 Aligned_cols=134 Identities=19% Similarity=0.137 Sum_probs=107.9
Q ss_pred cEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCC
Q 047519 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHL 544 (892)
Q Consensus 465 ~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 544 (892)
+.+++++|.++.++...+. ++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~~-----------~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPR-----------DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCSCCCT-----------TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCCCCCC-----------CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 4566666666654332211 6677888888887 566788899999999999999998878889999999
Q ss_pred cEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcch
Q 047519 545 EVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGY 612 (892)
Q Consensus 545 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 612 (892)
++|+|++|+|++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|.+.......+
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHH
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHH
Confidence 999999999999888889999999999999999987666555 788999999999999986544333
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=1.6e-13 Score=130.25 Aligned_cols=128 Identities=27% Similarity=0.304 Sum_probs=97.5
Q ss_pred CCCCCcCEEEccCCcCC-cCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCC
Q 047519 336 RGRRHYAEPHFSSNQLS-GSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFP 413 (892)
Q Consensus 336 ~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~ 413 (892)
...++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++| .+.+.++... .++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN--RVSGGLEVLAEKCP 88 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS--CCCSCTHHHHHHCT
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC--cccchHHHHhhhCC
Confidence 45577888888888887 67787788888888888888888754 46778888888888888 4455455444 578
Q ss_pred CccEEEccCCCCCCcc--hhhhCCCCccEEEccCCCCCCCCc---hhhhhhCCCcccEEEcc
Q 047519 414 NLFGLGLSACNISEFP--DILRTLHQLQWFNLSKNRIHGRIS---SWMWDLGITALYYLDLS 470 (892)
Q Consensus 414 ~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~~~L~~L~Ls 470 (892)
+|++|++++|.++.+| ..+..+++|++|++++|.+++..+ ..+..+ ++|+.|+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL--PQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC--TTCCEETTB
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC--CCcccccCC
Confidence 8888888888888654 677888888888888888876555 456666 788888765
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.1e-13 Score=132.39 Aligned_cols=92 Identities=24% Similarity=0.260 Sum_probs=85.1
Q ss_pred hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 738 (892)
.+.++.|+|++|+|++..|..|.++++|++|+ |++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~-Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLD-LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEE-CCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence 35688999999999988899999999999999 99999998888889999999999999999998877789999999999
Q ss_pred ECCCCcCcccCCC
Q 047519 739 NLSYNQFEGPIPQ 751 (892)
Q Consensus 739 ~ls~N~l~g~iP~ 751 (892)
++++|++++..+.
T Consensus 108 ~L~~N~~~c~c~~ 120 (170)
T 3g39_A 108 WLLNNPWDCACSD 120 (170)
T ss_dssp ECCSSCBCTTBGG
T ss_pred EeCCCCCCCCchh
Confidence 9999999987763
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=6.9e-13 Score=129.16 Aligned_cols=91 Identities=25% Similarity=0.235 Sum_probs=82.8
Q ss_pred hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738 (892)
Q Consensus 659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 738 (892)
.+.|+.|+|++|+|++..|..|+++++|+.|+ |++|+|++..+..|.++++|+.|+|++|+|++..+..|..+++|++|
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLY-FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEE-CCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence 35688999999999998899999999999999 99999998777778999999999999999997777679999999999
Q ss_pred ECCCCcCcccCC
Q 047519 739 NLSYNQFEGPIP 750 (892)
Q Consensus 739 ~ls~N~l~g~iP 750 (892)
++++|++++..+
T Consensus 111 ~L~~N~~~c~~~ 122 (174)
T 2r9u_A 111 YLYNNPWDCECR 122 (174)
T ss_dssp ECCSSCBCTTBG
T ss_pred EeCCCCcccccc
Confidence 999999987654
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=2.3e-15 Score=150.49 Aligned_cols=132 Identities=22% Similarity=0.211 Sum_probs=87.2
Q ss_pred hccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCc
Q 047519 561 WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNY 640 (892)
Q Consensus 561 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 640 (892)
.+..+++|++|++++|.+++ +| .+ ..+++|++|++++|+++ .+|..+ .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~--~~l~~L~~L~l~~n~l~-~l~~~~-~-------------------------- 90 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SL--SGMENLRILSLGRNLIK-KIENLD-A-------------------------- 90 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CH--HHHTTCCEEEEEEEEEC-SCSSHH-H--------------------------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-cc--ccCCCCCEEECCCCCcc-cccchh-h--------------------------
Confidence 56666666666666666655 33 22 56667777777777766 344321 1
Q ss_pred cceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcc-hhccCCCCCCeeeCCCC
Q 047519 641 YESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP-SLLRNLTEVESLDLSSN 719 (892)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N 719 (892)
.+++|+.|++++|++++ +| .+..+++|+.|+ +++|++++..+ ..+..+++|+.|++++|
T Consensus 91 -----------------~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~-l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 91 -----------------VADTLEELWISYNQIAS-LS-GIEKLVNLRVLY-MSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp -----------------HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE-ESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred -----------------cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE-CCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 15677778888887774 45 577777888887 88888874332 46777788888888888
Q ss_pred cCCCCCccc----------cCCCCCCCEEECCCCcCc
Q 047519 720 MLVGHIPTQ----------LTSLKYLSVLNLSYNQFE 746 (892)
Q Consensus 720 ~l~~~ip~~----------l~~l~~L~~L~ls~N~l~ 746 (892)
++++.+|.. +..+++|+.|| +|+++
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 877665543 67777888776 56554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=6.3e-13 Score=129.96 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=30.5
Q ss_pred ccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519 538 LVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605 (892)
Q Consensus 538 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (892)
+..+++|++|++++|+++. +|......++|+.|++++|.+++. ..+ ..+++|++|++++|+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCccc
Confidence 3445555555555555554 232222222555555555555432 222 44555555555555555
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.36 E-value=2.4e-11 Score=134.78 Aligned_cols=89 Identities=8% Similarity=-0.013 Sum_probs=51.3
Q ss_pred ccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCc
Q 047519 510 ISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIV 589 (892)
Q Consensus 510 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 589 (892)
.+..|.++++|+.+++.+ .++.....+|.+|++|+.++|..| ++.+.+.+|.++ +|+.+.+.+|.+....+..+ .
T Consensus 292 ~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F--~ 366 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW--Y 366 (401)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC--C
T ss_pred CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc--c
Confidence 344566666677777663 355444556666777777777443 555455666666 67777777766544333333 4
Q ss_pred CCC-CccEEEcCCCC
Q 047519 590 PFP-RFRIIDLSHNE 603 (892)
Q Consensus 590 ~l~-~L~~L~Ls~N~ 603 (892)
.++ .++.|.+..+.
T Consensus 367 ~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 367 GFPDDITVIRVPAES 381 (401)
T ss_dssp CSCTTCCEEEECGGG
T ss_pred CCCCCccEEEeCHHH
Confidence 443 45566555444
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=4.6e-15 Score=148.33 Aligned_cols=156 Identities=20% Similarity=0.237 Sum_probs=120.1
Q ss_pred ccCCCCCCEEEccCCCCCCCCCc------cccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCC
Q 047519 514 FVNSCNLTNLNLNGNRLEGPLPL------SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTT 587 (892)
Q Consensus 514 ~~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 587 (892)
+.....++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~- 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD- 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-
Confidence 33445666666666666666555 78888899999999998887 56 7888889999999999886 455443
Q ss_pred CcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeec
Q 047519 588 IVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDL 667 (892)
Q Consensus 588 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 667 (892)
..+++|++|++++|++++ +| . +. .+++|+.|++
T Consensus 90 -~~~~~L~~L~L~~N~l~~-l~-~-~~-------------------------------------------~l~~L~~L~l 122 (198)
T 1ds9_A 90 -AVADTLEELWISYNQIAS-LS-G-IE-------------------------------------------KLVNLRVLYM 122 (198)
T ss_dssp -HHHHHCSEEEEEEEECCC-HH-H-HH-------------------------------------------HHHHSSEEEE
T ss_pred -hcCCcCCEEECcCCcCCc-CC-c-cc-------------------------------------------cCCCCCEEEC
Confidence 556889999999999885 33 2 11 2778999999
Q ss_pred CCCcCCCCCh-hhhcCccccccccccCCCCCCCCcchh----------ccCCCCCCeeeCCCCcCCC
Q 047519 668 SSNKFQGGIP-EVVGKLNLLKGLNNISHNNLTGDIPSL----------LRNLTEVESLDLSSNMLVG 723 (892)
Q Consensus 668 s~N~l~~~~p-~~~~~l~~L~~L~~Ls~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~~ 723 (892)
++|++++..+ ..+..+++|++|+ +++|++++.+|.. +..+++|+.|| +|.++.
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~-l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLL-LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEE-ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEE-ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999984332 4789999999998 9999998777653 88999999998 777764
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=6.5e-11 Score=131.26 Aligned_cols=216 Identities=12% Similarity=0.086 Sum_probs=120.7
Q ss_pred cCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEE
Q 047519 341 YAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLG 419 (892)
Q Consensus 341 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~ 419 (892)
|+.+.+.. .++...+.+|.++++|+.+++.+|.++ .++...|. ..+|+.+.+..+ +.......+ .+++|+.++
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~---l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT---LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT---CCEECTTTTTTCTTCCCEE
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc---hheehhhHhhCCCCCCEEe
Confidence 44444443 333333344444445555555444444 23323333 344555544432 111111112 444555555
Q ss_pred ccCCCCCCcch-hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCC-----CCCCCCCCCCCeeecCCC
Q 047519 420 LSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT-----NIEYFPPTNMTQLNFDSN 493 (892)
Q Consensus 420 L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~l~~~ 493 (892)
+..+ ++.++. .|.+ .+|+.+.+. +.++......|..+ ++|+.+++.+|.+. .+.+..| .+|
T Consensus 233 l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c--~~L~~l~l~~~~~~~~~~~~I~~~aF--------~~c 299 (401)
T 4fdw_A 233 IPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYC--PELAEVTTYGSTFNDDPEAMIHPYCL--------EGC 299 (401)
T ss_dssp CCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTC--TTCCEEEEESSCCCCCTTCEECTTTT--------TTC
T ss_pred cCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCC--CCCCEEEeCCccccCCcccEECHHHh--------hCC
Confidence 5442 333332 3333 456666663 33433334445544 66666666655443 2222333 334
Q ss_pred CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCC-CCCEEE
Q 047519 494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILP-ELQVLI 572 (892)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~ 572 (892)
.+|+.+++. +.++......|.++.+|+.+.|..+ ++..-+.+|.+| +|+.+++.+|.+....+..|.+++ +++.|.
T Consensus 300 ~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 300 PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence 477778777 3466566678888899999999655 665666788899 899999999988877777787775 788898
Q ss_pred ccCCcC
Q 047519 573 LRSNRF 578 (892)
Q Consensus 573 L~~N~l 578 (892)
+..+.+
T Consensus 377 vp~~~~ 382 (401)
T 4fdw_A 377 VPAESV 382 (401)
T ss_dssp ECGGGH
T ss_pred eCHHHH
Confidence 877754
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=2e-12 Score=126.34 Aligned_cols=91 Identities=21% Similarity=0.157 Sum_probs=51.7
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcch--hccCCCCCCEEEccCCcCCCCCCCC--CCC
Q 047519 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPN--WLEILPELQVLILRSNRFWGPIGDN--TTI 588 (892)
Q Consensus 513 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~--~~~ 588 (892)
.+..+++|++|++++|.+++..+..+..+++|++|++++|+++. +|. .+..+++|+.|++++|+++. +|.. ..+
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~ 136 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVI 136 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHH
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHH
Confidence 34455566666666666664333334566666666666666644 443 55666666666666666643 2321 002
Q ss_pred cCCCCccEEEcCCCCCc
Q 047519 589 VPFPRFRIIDLSHNEFT 605 (892)
Q Consensus 589 ~~l~~L~~L~Ls~N~l~ 605 (892)
..+++|++||+++|.+.
T Consensus 137 ~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCSEETTEECCHH
T ss_pred HHCCccceeCCCcCCHH
Confidence 55677777777777654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.6e-11 Score=118.96 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=90.4
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
..+.+++++|.++. +|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 34677888887774 555443 688999999999998878888999999999999999998777778889999999999
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP 609 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 609 (892)
+|++++..+..+ ..+++|++|+|++|+++...+
T Consensus 87 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence 999987766655 788999999999999986654
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=1.2e-10 Score=129.62 Aligned_cols=217 Identities=12% Similarity=0.127 Sum_probs=96.2
Q ss_pred CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCC
Q 047519 336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPN 414 (892)
Q Consensus 336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~ 414 (892)
.++.+|+++.+..+ ++.....+|.++++|+.+++.++ ++ .++...|.++.+|+.+.+..+ - .......+ .+.
T Consensus 68 ~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~--l-~~i~~~aF~~~~- 140 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM--L-KSIGVEAFKGCD- 140 (394)
T ss_dssp TTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT--C-CEECTTTTTTCC-
T ss_pred hCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc--e-eeecceeeeccc-
Confidence 55566666666432 44344455666666666666544 33 344356666666666555443 1 11111111 221
Q ss_pred ccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCC
Q 047519 415 LFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN 493 (892)
Q Consensus 415 L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~ 493 (892)
+....+.. ....+ ...|.++++|+.+.+.++. .......|..+ .+|+.+.+..+ ++.+....+.+ |
T Consensus 141 ~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c--~~L~~i~l~~~-~~~I~~~~F~~--------~ 207 (394)
T 4fs7_A 141 FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGC--GKLKSIKLPRN-LKIIRDYCFAE--------C 207 (394)
T ss_dssp CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTC--TTCCBCCCCTT-CCEECTTTTTT--------C
T ss_pred ccccccCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCC--CCceEEEcCCC-ceEeCchhhcc--------c
Confidence 22222111 11111 1345666666666665443 21223334444 56666655443 22222222222 2
Q ss_pred CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519 494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573 (892)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 573 (892)
..|+.+.+..+... +...+....+|+.+.+... ++......+.++..|+.+.+..+.. ......|..+..++.+..
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEE
T ss_pred cccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceecc
Confidence 24444444333211 1122233445666655433 2223334455566666666655432 223344555555555555
Q ss_pred cCC
Q 047519 574 RSN 576 (892)
Q Consensus 574 ~~N 576 (892)
..+
T Consensus 284 ~~~ 286 (394)
T 4fs7_A 284 GSV 286 (394)
T ss_dssp CSS
T ss_pred Cce
Confidence 443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=4e-11 Score=116.64 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=87.3
Q ss_pred cEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCC
Q 047519 497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576 (892)
Q Consensus 497 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 576 (892)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56778887775 4555553 68899999999999887888899999999999999998866666788999999999999
Q ss_pred cCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL 608 (892)
Q Consensus 577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 608 (892)
++++..+..+ ..+++|++|+|++|.+....
T Consensus 92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence 9987665545 78899999999999988543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.20 E-value=8.9e-10 Score=122.52 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=123.2
Q ss_pred CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519 336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL 415 (892)
Q Consensus 336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 415 (892)
.++++|+.+.+..+. .......|.++++|+.+.+..+ ++ .++...|.++..|+.+.+..+.. . .........+|
T Consensus 159 ~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~--~-i~~~~~~~~~l 232 (394)
T 4fs7_A 159 ATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLY--Y-LGDFALSKTGV 232 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCC--E-ECTTTTTTCCC
T ss_pred cccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCce--E-eehhhcccCCC
Confidence 445555555554332 2233344555555555555544 22 23334555566666555554411 0 01111134555
Q ss_pred cEEEccCCCCCCcc-hhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519 416 FGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL 494 (892)
Q Consensus 416 ~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~ 494 (892)
+.+.+... ++.+. ..+..+..|+.+.+..+... .....+..+ ..++.+....+.+... . +.+|.
T Consensus 233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~--~~l~~~~~~~~~i~~~---~--------F~~~~ 297 (394)
T 4fs7_A 233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNC--SGLKKVIYGSVIVPEK---T--------FYGCS 297 (394)
T ss_dssp CEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTC--TTCCEEEECSSEECTT---T--------TTTCT
T ss_pred ceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccc--cccceeccCceeeccc---c--------ccccc
Confidence 55555432 22222 34556666666666655332 223334444 5666665554332211 1 22333
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
+|+.+.+..+ ++......|.++.+|+.++|.++ ++..-..+|.+|++|+.+++..+ ++.+...+|.++++|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 5666666543 44344556777778888888644 55444567788888888888766 665556678888888888886
Q ss_pred CCcCCCCCCCCCCCcCCCCccEE
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRII 597 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L 597 (892)
.+-- .+.. .+.++++|+.+
T Consensus 375 ~~~~--~~~~--~F~~c~~L~~I 393 (394)
T 4fs7_A 375 KRLE--QYRY--DFEDTTKFKWI 393 (394)
T ss_dssp GGGG--GGGG--GBCTTCEEEEE
T ss_pred CCCE--Ehhh--eecCCCCCcEE
Confidence 6521 1222 23666666654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=6.7e-11 Score=129.29 Aligned_cols=86 Identities=21% Similarity=0.150 Sum_probs=43.2
Q ss_pred hhheeeecCC-CcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519 660 TIFMTIDLSS-NKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738 (892)
Q Consensus 660 ~~L~~LdLs~-N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 738 (892)
++|+.|+|++ |+|++..|..|+++++|+.|+ |++|+|++.+|..|+++++|+.|||++|+|++..|..|..++ |+.|
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~-l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLT-IVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEE-CCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEE-CCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 3455555553 555544444555555555554 555555554555555555555555555555543333344333 5555
Q ss_pred ECCCCcCcc
Q 047519 739 NLSYNQFEG 747 (892)
Q Consensus 739 ~ls~N~l~g 747 (892)
+|++|++.+
T Consensus 109 ~l~~N~~~c 117 (347)
T 2ifg_A 109 VLSGNPLHC 117 (347)
T ss_dssp ECCSSCCCC
T ss_pred EeeCCCccC
Confidence 555555543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.10 E-value=1.3e-12 Score=143.55 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=62.8
Q ss_pred hhheeeecCCCcCCC----CChhhhcCccccccccccCCCCCCCC----cchhccCCCCCCeeeCCCCcCCCC----Ccc
Q 047519 660 TIFMTIDLSSNKFQG----GIPEVVGKLNLLKGLNNISHNNLTGD----IPSLLRNLTEVESLDLSSNMLVGH----IPT 727 (892)
Q Consensus 660 ~~L~~LdLs~N~l~~----~~p~~~~~l~~L~~L~~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~ 727 (892)
+.|+.|+|++|.|+. .++..+..+++|++|+ |++|+|++. ++..+...++|+.|||++|.|+.. ++.
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~-Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS-LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEE-CTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEe-CCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 457777777777763 2444556777888887 888888743 356677778889999999988753 334
Q ss_pred ccCCCCCCCEEECCCCcCcc
Q 047519 728 QLTSLKYLSVLNLSYNQFEG 747 (892)
Q Consensus 728 ~l~~l~~L~~L~ls~N~l~g 747 (892)
.+...++|++|||++|++++
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 45566889999999998864
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.03 E-value=1.2e-11 Score=135.79 Aligned_cols=160 Identities=13% Similarity=0.035 Sum_probs=91.7
Q ss_pred CCCCcEEEccCCCCCcCCCcccc-----CCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcC
Q 047519 281 LDKRRSITGYVFNFAGGPINWKS-----TLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGS 354 (892)
Q Consensus 281 l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~ 354 (892)
++.|++|++++|.++......+. ..++|++|+++ +|.++.... .+. ..+++|++|+|++|.+++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls---~n~l~~~~~~~l~------~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA---SCQLDPAGLRTLL------PVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT---TCCCCHHHHHHTH------HHHHTEEEEECCSSCCCHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec---CCCCCHHHHHHHH------HHHHhccHhhcCCCCCCHH
Confidence 45788999999888754333322 22678888888 777754322 110 2345678888888877654
Q ss_pred CCccc-----cCCCCCCEEECcCCcCCCc----cChhhcCCCCCCCEEEcccCCCCCCcc--ccCCC-CCCCccEEEccC
Q 047519 355 IPSSV-----YELENLILLRLPSNRLSGT----TELYDFAKLKNLKWLFVSNNRLSLSTK--LKVNS-SFPNLFGLGLSA 422 (892)
Q Consensus 355 ~p~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~-~l~~L~~L~L~~ 422 (892)
....+ ...++|++|+|++|.++.. ++ ..+..+++|++|+|++|.+...+. +.... ..++|++|+|++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH-HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH-HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 43333 2456778888888777532 22 234566777777777774322111 01111 344566666666
Q ss_pred CCCCC-----cchhhhCCCCccEEEccCCCCCC
Q 047519 423 CNISE-----FPDILRTLHQLQWFNLSKNRIHG 450 (892)
Q Consensus 423 n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~ 450 (892)
|.++. ++..+...++|++|+|++|.|++
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 66652 23344445566666666666553
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=1.2e-09 Score=119.13 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=89.1
Q ss_pred cEEECCCC-ccCccccccccCCCCCCEEEccC-CCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 497 KVLDMRMN-NFNGKISQKFVNSCNLTNLNLNG-NRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 497 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
..++.+++ .++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677776 6764 666 88888899999986 89987777888999999999999999998888888899999999999
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhh
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLD 614 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 614 (892)
+|+|++..+..+ ..++ |+.|+|++|.+.......++.
T Consensus 89 ~N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~l~~~~ 125 (347)
T 2ifg_A 89 FNALESLSWKTV--QGLS-LQELVLSGNPLHCSCALRWLQ 125 (347)
T ss_dssp SSCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGGGHHHH
T ss_pred CCccceeCHHHc--ccCC-ceEEEeeCCCccCCCccHHHH
Confidence 999987655544 4444 999999999998654433333
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.94 E-value=6.6e-08 Score=107.32 Aligned_cols=111 Identities=7% Similarity=-0.066 Sum_probs=61.2
Q ss_pred cChhhhcCCC-CCcEEEccCCCCCcCCCccccCCCCCcEEecCcccccc---ceeecc--chhhhhhccCCCCCcCEEEc
Q 047519 273 VDSDYIGDLD-KRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMA---ITKAVK--EAIWLQVFVRGRRHYAEPHF 346 (892)
Q Consensus 273 ~p~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~---l~~~~p--~l~~l~l~~~~l~~L~~L~L 346 (892)
|...++.++. .|+.+.+..+ ++..-..+|.++++|+.+.+. .+. ++ .+. .| .++.+|+.+.+
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~---~n~p~~l~-~Ig~~aF-------~~c~~L~~i~~ 121 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQ---DNKPSCVK-KIGRQAF-------MFCSELTDIPI 121 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEG---GGCCCCCC-EECTTTT-------TTCTTCCBCGG
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeec---CCCCCeee-Eechhhc-------hhcccceeecc
Confidence 4443566664 4777777653 444445567777777777776 442 21 222 45 55666666655
Q ss_pred cCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccC
Q 047519 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN 398 (892)
Q Consensus 347 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 398 (892)
..+ ++......|..+.+|+.+.+..+. . .+....|..+.+|+.+.+..+
T Consensus 122 ~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 122 LDS-VTEIDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp GTT-CSEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT
T ss_pred CCc-cceehhhhhhhhccccccccccee-e-eecccceecccccccccccce
Confidence 443 333344455666666666665432 2 233355666666666666544
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.85 E-value=1.7e-07 Score=104.09 Aligned_cols=127 Identities=9% Similarity=-0.002 Sum_probs=69.0
Q ss_pred cccCCC-Ccceec--ccceeecChhhhcCCCCCcEEEccCCC---CCcCCCccccCCCCCcEEecCccccccceeecc--
Q 047519 255 VGLLFE-QDDTLG--QSVNGYVDSDYIGDLDKRRSITGYVFN---FAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-- 326 (892)
Q Consensus 255 ~l~~l~-~L~~L~--~~~~~~~p~~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-- 326 (892)
+|.+++ .|+.+. +.++ .|...++.++.+|+.+.+..+. ++..-..+|..+.+|+.+.+. .+ +. .++
T Consensus 58 aF~~~~~~L~sI~iP~svt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~---~~-~~-~I~~~ 131 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTVT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL---DS-VT-EIDSE 131 (394)
T ss_dssp TTTTCCSCCCEEEECTTCC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG---TT-CS-EECTT
T ss_pred hccCCCCcCEEEEECCCee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC---Cc-cc-eehhh
Confidence 444443 356555 3332 2333367777777777776543 332233456666677666654 32 22 222
Q ss_pred chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccC
Q 047519 327 EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN 398 (892)
Q Consensus 327 ~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 398 (892)
.+ ..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++ .+....|.. .+|+.+.+..+
T Consensus 132 aF-------~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 132 AF-------HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp TT-------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTT
T ss_pred hh-------hhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCc
Confidence 55 66777777777543 33344456667777777777654 32 333344543 45777766554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=3.5e-09 Score=115.07 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=7.6
Q ss_pred CCCCCCeeeCCCCcCC
Q 047519 707 NLTEVESLDLSSNMLV 722 (892)
Q Consensus 707 ~l~~L~~L~Ls~N~l~ 722 (892)
.+++|+.|+|++|.++
T Consensus 305 ~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHTTCSEEECCSBBCC
T ss_pred cCCcceEEECCCCcCC
Confidence 3444555555555443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.59 E-value=1.1e-06 Score=96.75 Aligned_cols=37 Identities=5% Similarity=0.046 Sum_probs=15.0
Q ss_pred cccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 537 SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 537 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
.+..+.+|+.+.+..+ +.......|.++..|+.+.+.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp 248 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIP 248 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEEC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcC
Confidence 3444444554444332 222222334444444444443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=2.1e-08 Score=108.88 Aligned_cols=164 Identities=21% Similarity=0.249 Sum_probs=106.5
Q ss_pred ccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc--CCCCCCEEEccC--CcCCCCC---
Q 047519 510 ISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE--ILPELQVLILRS--NRFWGPI--- 582 (892)
Q Consensus 510 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~~--- 582 (892)
+...+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.+.......+. .+|+|+.|+|+. |...+..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3345567788999999887311 2333 33 78899999998888654444443 689999999863 2221111
Q ss_pred --CCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhh
Q 047519 583 --GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILT 660 (892)
Q Consensus 583 --~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 660 (892)
...+....+++|++|+|++|.+++..+..+.. . ..++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-------a----------------------------------~~~~ 279 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-------S----------------------------------DILP 279 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-------C----------------------------------SSGG
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-------C----------------------------------ccCC
Confidence 01121135789999999999987433221110 0 0167
Q ss_pred hheeeecCCCcCCCC----ChhhhcCccccccccccCCCCCCCCcchhccC-CCCCCeeeCCCCc
Q 047519 661 IFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNNISHNNLTGDIPSLLRN-LTEVESLDLSSNM 720 (892)
Q Consensus 661 ~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~-l~~L~~L~Ls~N~ 720 (892)
.|+.|||+.|.+++. ++..+..+++|+.|+ |++|.|+...-..+.. + ...+|++.|+
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~-L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN-MKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEE-CCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEE-CCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 899999999999864 344456689999998 9999988554444443 2 3557887776
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=1.5e-05 Score=87.65 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=54.1
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 574 (892)
.|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+....|.++.+|+.+.+.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 4555555433 33333445555666666666433 332334456666666666666666655555566666666666665
Q ss_pred CCcCCCCCCCCCCCcCCCCccEEEcCCC
Q 047519 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHN 602 (892)
Q Consensus 575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 602 (892)
.+ ++..-... |.++.+|+.+.+..+
T Consensus 319 ~~-l~~I~~~a--F~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 319 TA-LKTIQVYA--FKNCKALSTISYPKS 343 (379)
T ss_dssp TT-CCEECTTT--TTTCTTCCCCCCCTT
T ss_pred cc-ccEEHHHH--hhCCCCCCEEEECCc
Confidence 43 32221222 355666666666443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=2.1e-07 Score=95.76 Aligned_cols=90 Identities=24% Similarity=0.298 Sum_probs=67.6
Q ss_pred hhhhee--eecCCCcCC---CCChhhhcCccccccccccCCCCCCC--CcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519 659 LTIFMT--IDLSSNKFQ---GGIPEVVGKLNLLKGLNNISHNNLTG--DIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS 731 (892)
Q Consensus 659 l~~L~~--LdLs~N~l~---~~~p~~~~~l~~L~~L~~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 731 (892)
.+.|.. ++++.|+.. +.++....+++.|+.|+ |++|+|++ .+|..++.+++|+.|+|++|+|++. ..+..
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~-Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~ 216 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLN-LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK 216 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEE-CTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEE-CCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh
Confidence 344554 778888543 22222335688999998 99999997 5567788999999999999999865 33444
Q ss_pred CC--CCCEEECCCCcCcccCCC
Q 047519 732 LK--YLSVLNLSYNQFEGPIPQ 751 (892)
Q Consensus 732 l~--~L~~L~ls~N~l~g~iP~ 751 (892)
+. .|+.|+|++|++++.+|.
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSS
T ss_pred cccCCcceEEccCCcCccccCc
Confidence 44 899999999999988874
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=9.4e-07 Score=90.85 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=66.9
Q ss_pred HhhhhheeeecCCCcCCC--CChhhhcCccccccccccCCCCCCCCcchhccCCC--CCCeeeCCCCcCCCCCcc-----
Q 047519 657 RILTIFMTIDLSSNKFQG--GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLT--EVESLDLSSNMLVGHIPT----- 727 (892)
Q Consensus 657 ~~l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~ip~----- 727 (892)
..++.|+.|+|++|+|++ .+|..+..+++|+.|+ |++|+|++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~-Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN-LSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEE-CTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEE-CCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 347899999999999997 4567788999999999 999999965 3355555 999999999999987763
Q ss_pred --ccCCCCCCCEEE
Q 047519 728 --QLTSLKYLSVLN 739 (892)
Q Consensus 728 --~l~~l~~L~~L~ 739 (892)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 367788999886
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=4.3e-07 Score=88.83 Aligned_cols=118 Identities=8% Similarity=0.004 Sum_probs=76.9
Q ss_pred ccCCCCCCeEecCCC-CCCCC---CCCCcCcCCCCCCeEeCCCCCCcc----ccCCCCCcccCCCCceecCCcccCCcch
Q 047519 86 LFFLPHIRKLNLAFN-DFNYS---EISSGFSQLRSLTLLNLSSSNFMG----SIPASIDLINVSRLSTNYLPIFAFSDCF 157 (892)
Q Consensus 86 l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~Ls~n~~~~----~~p~~l~~~~L~~L~~L~Ls~~~~~~~~ 157 (892)
+...+.|++|+|++| .+... .+...+...++|++|+|++|.+.. .+...+. ..+.|++|+|++|.+...-
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--hCCCcCEEECcCCcCCHHH
Confidence 455677788888877 76542 133455667778888888887753 2333444 5567888888877655443
Q ss_pred hhhhhcccCCCCCCCEEec--CCccCccccccc-----CCCCCCcccEEEccCCCCcCc
Q 047519 158 QLDVKTTFLHDDLEEEIYM--TQLDGFKVAEKE-----NWLQEESFIYLLLHVDDMEIA 209 (892)
Q Consensus 158 p~~l~~~~~~l~~L~~L~L--~~~~~~~~~~~~-----~~l~~~~L~~L~Ls~n~~~l~ 209 (892)
...+...++..+.|++|+| ++|.+....... ... ++|++|+|++| .+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n--~~L~~L~L~~n--~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN--TTLLKFGYHFT--QQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC--SSCCEEECCCS--SHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC--CCcCEEeccCC--CCC
Confidence 3334444447888888888 778876654322 445 78899999888 553
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.08 E-value=9e-07 Score=86.54 Aligned_cols=124 Identities=10% Similarity=-0.011 Sum_probs=90.6
Q ss_pred CCcCcCCCCCCeEeCCCC-CCcc----ccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCc
Q 047519 108 SSGFSQLRSLTLLNLSSS-NFMG----SIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGF 182 (892)
Q Consensus 108 p~~~~~l~~L~~L~Ls~n-~~~~----~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~ 182 (892)
...+...++|++|+|++| .+.. .+...+. ..++|++|+|++|.+...-...++..++..++|++|+|++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH--hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 445778899999999999 8864 3445566 78899999999987655444444444448899999999999988
Q ss_pred ccccc----c-CCCCCCcccEEEc--cCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCC
Q 047519 183 KVAEK----E-NWLQEESFIYLLL--HVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTC 249 (892)
Q Consensus 183 ~~~~~----~-~~l~~~~L~~L~L--s~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~ 249 (892)
+.... . ... ++|++|+| ++| .+.......+. ..+...+.|++|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n--~~L~~L~L~~~~N--~i~~~g~~~l~------------~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSN--TSLIELRIDNQSQ--PLGNNVEMEIA------------NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGC--SSCCEEECCCCSS--CCCHHHHHHHH------------HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhC--CCceEEEecCCCC--CCCHHHHHHHH------------HHHHhCCCcCEEeccCCCCC
Confidence 76432 2 455 78999999 888 77654322221 45667789999999998653
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=2.5e-05 Score=74.35 Aligned_cols=34 Identities=3% Similarity=-0.033 Sum_probs=14.3
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCcEEEccCC
Q 047519 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNN 552 (892)
Q Consensus 519 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 552 (892)
.|+.||+++|.++..--..+.+|++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444443332233344444444444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.35 E-value=3.3e-05 Score=73.47 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=65.6
Q ss_pred cccEEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCC----CCCcEEEccCCC-CCCCcchhccCCCCC
Q 047519 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNC----HHLEVLDVGNNQ-INDNFPNWLEILPEL 568 (892)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L 568 (892)
.|+.||++++.++...-..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 79999999999988777778899999999999995 664433445553 479999999984 877555566778888
Q ss_pred CEEEccCCc
Q 047519 569 QVLILRSNR 577 (892)
Q Consensus 569 ~~L~L~~N~ 577 (892)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888775
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0032 Score=56.87 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=40.1
Q ss_pred cccccCCCCCC-CCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519 688 GLNNISHNNLT-GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747 (892)
Q Consensus 688 ~L~~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 747 (892)
.++ -+++.++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++|+.|+|++|++..
T Consensus 12 ~v~-Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVD-CGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEE-CCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEE-eCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 454 6777775 34554332 357888888888886666677888888888888888764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.45 E-value=0.00093 Score=64.74 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=5.0
Q ss_pred CCCccEEEccC
Q 047519 435 LHQLQWFNLSK 445 (892)
Q Consensus 435 l~~L~~L~Ls~ 445 (892)
-+.|++|+|++
T Consensus 40 n~~L~~L~L~~ 50 (197)
T 1pgv_A 40 DTDLKEVNINN 50 (197)
T ss_dssp CSSCCEEECTT
T ss_pred CCCccEEECCC
Confidence 34444444444
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.25 E-value=0.0014 Score=63.38 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=26.9
Q ss_pred CCCCcCEEEccCC-cCCcC----CCccccCCCCCCEEECcCCcCCCc----cChhhcCCCCCCCEEEcccCC
Q 047519 337 GRRHYAEPHFSSN-QLSGS----IPSSVYELENLILLRLPSNRLSGT----TELYDFAKLKNLKWLFVSNNR 399 (892)
Q Consensus 337 ~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~ 399 (892)
+-+.|++|+|++| .+... +.+.+..-+.|+.|+|++|.|... +. ..+...+.|++|+|++|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA-~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI-ELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH-HHHHHCSSCCEEECCSSB
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH-HHHhcCCccCeEecCCCc
Confidence 3344555555543 44321 223334444555555555555421 11 223334455555555553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.94 E-value=0.0071 Score=54.60 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=48.3
Q ss_pred eeeecCCCcCC-CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCC
Q 047519 663 MTIDLSSNKFQ-GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG 723 (892)
Q Consensus 663 ~~LdLs~N~l~-~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 723 (892)
..+|.+++.++ ..+|..+. .+|+.|+ |++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~-Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELV-LTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEE-CTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEE-CCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 37899999997 46665443 3688998 99999998778889999999999999998864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.09 E-value=64 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=20.5
Q ss_pred CccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccC
Q 047519 535 PLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS 575 (892)
Q Consensus 535 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 575 (892)
..+|.+|++|+.+.|-.+ ++.+....|.++.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345555555555555543 3333344555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.22 E-value=74 Score=26.34 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=34.8
Q ss_pred cCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCC
Q 047519 506 FNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNN 552 (892)
Q Consensus 506 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 552 (892)
++..-...|.++.+|+.+.|-.+ ++..-..+|.+|.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44445567888899999999865 44455678999999999988763
Done!