BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047520
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
           Dehydrogenase, A Putative Target For Novel Antimalarial
           Drugs
 pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
           Dehydrogenase, A Putative Target For Novel Antimalarial
           Drugs
 pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
           Dehydrogenase, A Putative Target For Novel Antimalarial
           Drugs
 pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
           Dehydrogenase, A Putative Target For Novel Antimalarial
           Drugs
 pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
           Dehydrogenase, A Putative Target For Novel Antimalarial
           Drugs
 pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
           Dehydrogenase, A Putative Target For Novel Antimalarial
           Drugs
          Length = 470

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 2   VVALRYADKNGYVFERFIGFKHVTCTTAISLKE 34
           V  L  +D NGYV+E   GF H      I LKE
Sbjct: 276 VKVLTLSDSNGYVYEPN-GFTHENLEFLIDLKE 307


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,304,478
Number of Sequences: 62578
Number of extensions: 68225
Number of successful extensions: 227
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 3
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)