BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047520
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SVZ6|ZMYM1_HUMAN Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1
Length = 1142
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 1 MVVALRYADKNG---YVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDG 57
+ + +RY K+ + ERF+GF T L + + G+ + ++ Q YD
Sbjct: 659 LSICVRYPQKSSKAILIKERFLGFVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDS 718
Query: 58 ASNIQGEFNAIVAVAKKHDQINSFFNVIANVINV 91
+N++ +FN I A KK + + + A+ +++
Sbjct: 719 TTNLKIKFNKIAAEFKKEEPRALYIHCYAHFLDL 752
>sp|Q3ZYA3|UVRC_DEHSC UvrABC system protein C OS=Dehalococcoides sp. (strain CBDB1)
GN=uvrC PE=3 SV=1
Length = 607
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 27 TTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAI 68
+++++L +AL +L + GLS+ R +GYD SNIQG NA+
Sbjct: 373 SSSVTLTDALAELQTALGLSLPPQRIEGYD-ISNIQGT-NAV 412
>sp|A5FQB7|UVRC_DEHSB UvrABC system protein C OS=Dehalococcoides sp. (strain BAV1)
GN=uvrC PE=3 SV=1
Length = 607
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 27 TTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAI 68
+++++L +AL +L + GLS+ R +GYD SNIQG NA+
Sbjct: 373 SSSVTLTDALAELQTALGLSLPPQRIEGYD-ISNIQGT-NAV 412
>sp|P19314|G3P_METBR Glyceraldehyde-3-phosphate dehydrogenase OS=Methanobacterium
bryantii GN=gap PE=3 SV=2
Length = 338
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 6 RYADKNGY-----VFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
R A +NGY V ER F+ I + D+L K + + +G GA N
Sbjct: 41 RMAVENGYDLYISVPERESSFEE----AGIKVTGTADELLEKLDIVVD-CTPEGI-GAKN 94
Query: 61 IQGEF-----NAIVAVAKKHDQINSFFNVIANVINVVGASCKR 98
+G + AI +KHDQI FN +N +V+G R
Sbjct: 95 KEGTYEKMGLKAIFQGGEKHDQIGLSFNSFSNYNDVIGKDYAR 137
>sp|Q03L77|GLYA_STRTD Serine hydroxymethyltransferase OS=Streptococcus thermophilus
(strain ATCC BAA-491 / LMD-9) GN=glyA PE=3 SV=1
Length = 416
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 11 NGYVFERFIG--FKHVTCTTAISLKEALDQLFSKYGLSI 47
N VF G +HV A++LKEALD F +YG ++
Sbjct: 252 NSAVFPGLQGGPLEHVIAAKAVALKEALDPAFKEYGENV 290
>sp|Q5M4W1|GLYA_STRT2 Serine hydroxymethyltransferase OS=Streptococcus thermophilus
(strain ATCC BAA-250 / LMG 18311) GN=glyA PE=3 SV=1
Length = 416
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 11 NGYVFERFIG--FKHVTCTTAISLKEALDQLFSKYGLSI 47
N VF G +HV A++LKEALD F +YG ++
Sbjct: 252 NSAVFPGLQGGPLEHVIAAKAVALKEALDPAFKEYGENV 290
>sp|Q5M0B4|GLYA_STRT1 Serine hydroxymethyltransferase OS=Streptococcus thermophilus
(strain CNRZ 1066) GN=glyA PE=3 SV=1
Length = 416
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 11 NGYVFERFIG--FKHVTCTTAISLKEALDQLFSKYGLSI 47
N VF G +HV A++LKEALD F +YG ++
Sbjct: 252 NSAVFPGLQGGPLEHVIAAKAVALKEALDPAFKEYGENV 290
>sp|P31709|GSPM_PECCC Type II secretion system protein M OS=Pectobacterium carotovorum
subsp. carotovorum GN=outM PE=3 SV=1
Length = 164
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 30 ISLKEALDQLFSKYGLSISRLRKQGYDGASNI-QGEFNAIVAVAKKHDQINSFFNVIANV 88
+SL + Q +YGL++ RL+ QG + + Q +FN+++ + +Q N VI+
Sbjct: 82 VSLPILISQSTKRYGLTVVRLQPQGSQASVTLGQSDFNSLLRWLGELEQKNG-VKVISLD 140
Query: 89 INVVGAS 95
+N V S
Sbjct: 141 VNAVEQS 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,354,940
Number of Sequences: 539616
Number of extensions: 1133885
Number of successful extensions: 4123
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4119
Number of HSP's gapped (non-prelim): 9
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)