Query 047520
Match_columns 102
No_of_seqs 140 out of 1035
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14291 DUF4371: Domain of un 99.9 3.7E-25 8E-30 151.7 4.5 66 1-66 169-234 (235)
2 KOG1121 Tam3-transposase (Ac f 97.6 0.00036 7.8E-09 53.8 7.8 99 1-100 184-308 (641)
3 PF04937 DUF659: Protein of un 97.0 0.0015 3.3E-08 42.3 4.3 53 16-70 60-114 (153)
4 COG0400 Predicted esterase [Ge 75.4 2.7 5.9E-05 28.5 2.3 39 26-64 77-115 (207)
5 COG1069 AraB Ribulose kinase [ 67.8 6.6 0.00014 30.6 3.1 32 30-61 54-85 (544)
6 PF01890 CbiG_C: Cobalamin syn 66.4 12 0.00027 23.1 3.6 46 26-74 11-56 (121)
7 PF06577 DUF1134: Protein of u 62.5 12 0.00027 24.4 3.2 33 26-58 17-49 (160)
8 PRK07027 cobalamin biosynthesi 62.1 12 0.00026 23.3 3.1 31 26-56 13-43 (126)
9 cd00304 RT_like RT_like: Rever 58.0 27 0.00058 19.8 3.9 24 28-51 58-83 (98)
10 cd01648 TERT TERT: Telomerase 57.9 15 0.00033 22.3 2.9 37 3-47 54-91 (119)
11 PF13127 DUF3955: Protein of u 57.2 6.6 0.00014 21.6 1.1 14 5-18 25-38 (63)
12 PF07872 DUF1659: Protein of u 56.5 26 0.00057 17.9 4.6 34 2-35 7-44 (47)
13 PF02817 E3_binding: e3 bindin 54.9 9.9 0.00022 18.8 1.4 23 36-58 9-31 (39)
14 cd01646 RT_Bac_retron_I RT_Bac 54.2 18 0.0004 22.9 3.0 37 3-47 84-120 (158)
15 PF00600 Flu_NS1: Influenza no 54.1 27 0.00058 23.4 3.7 38 3-40 145-182 (217)
16 cd03487 RT_Bac_retron_II RT_Ba 53.5 39 0.00085 22.5 4.6 20 28-47 155-174 (214)
17 cd04870 ACT_PSP_1 CT domains f 52.5 22 0.00047 19.6 2.8 36 23-58 3-38 (75)
18 cd04875 ACT_F4HF-DF N-terminal 51.7 25 0.00054 19.2 3.0 36 25-60 5-40 (74)
19 PF12637 TSCPD: TSCPD domain; 50.9 29 0.00063 20.5 3.3 50 3-53 12-63 (95)
20 PF02196 RBD: Raf-like Ras-bin 49.2 14 0.0003 20.6 1.6 27 27-53 18-44 (71)
21 COG2716 GcvR Glycine cleavage 48.4 22 0.00049 23.6 2.7 36 23-58 96-131 (176)
22 COG5461 Type IV pili component 46.8 34 0.00074 23.4 3.4 39 26-64 98-136 (224)
23 PF02914 DDE_2: Bacteriophage 46.4 45 0.00097 23.1 4.0 39 18-60 44-82 (219)
24 PF02801 Ketoacyl-synt_C: Beta 45.3 44 0.00095 20.1 3.6 39 26-64 21-59 (119)
25 PF02563 Poly_export: Polysacc 45.2 39 0.00083 19.1 3.1 36 8-43 35-70 (82)
26 KOG1537 Homoserine kinase [Ami 44.5 44 0.00094 24.2 3.8 37 24-60 315-352 (355)
27 PF00665 rve: Integrase core d 44.2 64 0.0014 18.7 4.3 47 16-64 35-82 (120)
28 smart00455 RBD Raf-like Ras-bi 44.1 17 0.00036 20.3 1.4 28 27-54 17-44 (70)
29 PF09476 Pilus_CpaD: Pilus bio 42.7 58 0.0013 22.0 4.1 31 29-59 91-121 (203)
30 PF14804 Jag_N: Jag N-terminus 42.0 19 0.0004 19.0 1.3 23 28-50 3-25 (52)
31 cd01817 RGS12_RBD Ubiquitin do 41.5 20 0.00043 20.4 1.5 29 27-55 17-45 (73)
32 PF08154 NLE: NLE (NUC135) dom 41.4 60 0.0013 17.6 4.1 35 3-40 2-39 (65)
33 PRK12613 galactose-6-phosphate 40.3 32 0.00069 22.1 2.4 26 25-50 7-32 (141)
34 COG0698 RpiB Ribose 5-phosphat 40.0 31 0.00067 22.4 2.4 33 25-57 7-39 (151)
35 TIGR01882 peptidase-T peptidas 39.4 19 0.00042 26.5 1.5 33 14-46 5-49 (410)
36 COG5400 Uncharacterized protei 39.1 37 0.00079 22.7 2.6 32 26-57 62-93 (205)
37 PF00691 OmpA: OmpA family; I 38.6 75 0.0016 17.9 4.4 30 29-58 52-81 (97)
38 COG0533 QRI7 Metal-dependent p 38.4 86 0.0019 23.2 4.7 60 15-74 35-96 (342)
39 TIGR01118 lacA galactose-6-pho 38.3 36 0.00077 21.8 2.4 26 25-50 7-32 (141)
40 PF06491 Disulph_isomer: Disul 37.0 43 0.00094 21.3 2.6 33 10-43 103-135 (136)
41 PF11212 DUF2999: Protein of u 37.0 20 0.00043 20.5 1.0 16 35-50 59-74 (82)
42 PF06057 VirJ: Bacterial virul 36.6 23 0.0005 23.9 1.4 41 25-66 47-87 (192)
43 PRK05788 cobalamin biosynthesi 36.5 48 0.0011 24.0 3.1 31 25-55 203-233 (315)
44 PLN02828 formyltetrahydrofolat 36.3 1.6E+02 0.0034 21.0 5.6 36 2-39 201-240 (268)
45 PF08821 CGGC: CGGC domain; I 36.0 97 0.0021 18.8 4.0 30 16-46 38-67 (107)
46 PRK08621 galactose-6-phosphate 35.3 43 0.00092 21.5 2.4 26 25-50 7-32 (142)
47 PRK10477 outer membrane lipopr 35.3 1E+02 0.0022 20.1 4.3 26 27-52 146-171 (177)
48 PRK07571 bidirectional hydroge 35.1 20 0.00043 23.7 0.9 35 27-62 102-146 (169)
49 PF11691 DUF3288: Protein of u 34.7 50 0.0011 19.6 2.5 22 28-49 43-64 (90)
50 PF14503 YhfZ_C: YhfZ C-termin 34.2 19 0.00041 25.1 0.7 32 16-47 12-44 (232)
51 TIGR00329 gcp_kae1 metallohydr 33.5 1E+02 0.0022 22.0 4.4 41 26-66 46-86 (305)
52 TIGR03027 pepcterm_export puta 33.4 1.1E+02 0.0025 19.5 4.3 36 8-43 25-60 (165)
53 TIGR01120 rpiB ribose 5-phosph 33.1 50 0.0011 21.2 2.5 26 25-50 6-31 (143)
54 cd01025 TOPRIM_recR TOPRIM_rec 32.6 72 0.0016 19.6 3.0 36 13-50 56-91 (112)
55 COG3414 SgaB Phosphotransferas 32.5 1E+02 0.0022 18.2 3.6 20 27-46 13-32 (93)
56 cd02980 TRX_Fd_family Thioredo 32.3 60 0.0013 17.6 2.5 36 27-62 14-55 (77)
57 PRK11589 gcvR glycine cleavage 32.2 60 0.0013 21.8 2.9 36 22-57 98-133 (190)
58 cd06155 eu_AANH_C_1 A group of 32.0 74 0.0016 18.6 3.0 27 28-54 27-53 (101)
59 cd01651 RT_G2_intron RT_G2_int 31.9 1.4E+02 0.003 19.4 4.7 27 29-55 186-214 (226)
60 TIGR00689 rpiB_lacA_lacB sugar 31.9 52 0.0011 21.1 2.4 26 25-50 5-30 (144)
61 PRK14143 heat shock protein Gr 31.8 45 0.00097 23.3 2.3 28 30-57 152-179 (238)
62 PF06782 UPF0236: Uncharacteri 31.8 1.3E+02 0.0028 23.1 4.9 33 27-59 235-268 (470)
63 KOG1907 Phosphoribosylformylgl 31.2 44 0.00095 28.3 2.4 27 3-33 1239-1266(1320)
64 PRK05571 ribose-5-phosphate is 31.0 55 0.0012 21.1 2.5 26 25-50 7-32 (148)
65 cd04925 ACT_ACR_2 ACT domain-c 30.9 88 0.0019 17.1 3.1 33 26-58 7-39 (74)
66 KOG2708 Predicted metalloprote 30.8 1.3E+02 0.0027 21.5 4.3 49 20-68 39-89 (336)
67 PRK14147 heat shock protein Gr 30.8 47 0.001 21.9 2.2 27 31-57 101-127 (172)
68 cd00307 RuBisCO_small_like Rib 30.7 1.1E+02 0.0023 17.9 3.4 37 21-59 36-72 (84)
69 KOG4024 Complement component 1 30.5 1.9E+02 0.0042 20.2 7.4 47 31-93 218-264 (266)
70 PRK14878 UGMP family protein; 30.4 1.3E+02 0.0028 21.7 4.5 44 27-70 43-86 (323)
71 PF01042 Ribonuc_L-PSP: Endori 30.3 77 0.0017 19.1 3.0 26 29-54 45-70 (121)
72 cd00446 GrpE GrpE is the adeni 30.0 50 0.0011 20.6 2.1 28 30-57 69-96 (137)
73 PF09379 FERM_N: FERM N-termin 29.8 1E+02 0.0022 16.8 4.3 28 25-55 15-42 (80)
74 TIGR01958 nuoE_fam NADH-quinon 29.7 31 0.00067 22.0 1.1 35 27-61 82-126 (148)
75 PRK11198 LysM domain/BON super 29.6 85 0.0018 19.9 3.2 40 27-66 22-61 (147)
76 COG4086 Predicted secreted pro 29.6 1E+02 0.0023 22.2 3.8 21 27-47 210-230 (299)
77 COG0560 SerB Phosphoserine pho 29.6 56 0.0012 22.1 2.4 35 25-60 138-172 (212)
78 TIGR02802 Pal_lipo peptidoglyc 29.6 81 0.0018 18.3 2.9 30 29-58 53-82 (104)
79 cd03081 TRX_Fd_NuoE_FDH_gamma 29.5 31 0.00067 19.5 1.0 35 27-62 15-59 (80)
80 PF00078 RVT_1: Reverse transc 29.4 89 0.0019 20.0 3.3 21 27-47 173-193 (214)
81 PF02502 LacAB_rpiB: Ribose/Ga 29.4 39 0.00084 21.5 1.5 30 25-54 6-35 (140)
82 PRK14140 heat shock protein Gr 29.1 53 0.0011 22.2 2.2 28 30-57 121-148 (191)
83 TIGR01119 lacB galactose-6-pho 29.0 63 0.0014 21.4 2.5 26 25-50 7-32 (171)
84 cd03063 TRX_Fd_FDH_beta TRX-li 28.6 77 0.0017 18.7 2.6 34 27-60 14-51 (92)
85 PF04954 SIP: Siderophore-inte 28.5 93 0.002 18.8 3.1 25 31-55 90-115 (119)
86 PF07841 DM4_12: DM4/DM12 fami 28.4 57 0.0012 18.4 2.0 19 31-49 3-21 (82)
87 cd01760 RBD Ubiquitin-like dom 28.4 40 0.00086 19.0 1.3 28 27-54 17-44 (72)
88 COG1596 Wza Periplasmic protei 27.9 2E+02 0.0042 19.9 4.9 42 7-48 73-114 (239)
89 PRK14144 heat shock protein Gr 27.3 57 0.0012 22.2 2.1 27 31-57 129-155 (199)
90 PF06751 EutB: Ethanolamine am 27.1 76 0.0016 24.2 2.9 35 18-52 179-215 (444)
91 PRK14163 heat shock protein Gr 26.7 60 0.0013 22.3 2.2 28 30-57 117-144 (214)
92 PF03511 Fanconi_A: Fanconi an 26.6 78 0.0017 17.5 2.2 21 27-47 30-50 (64)
93 cd06404 PB1_aPKC PB1 domain is 26.3 69 0.0015 18.7 2.1 29 2-39 40-68 (83)
94 PF12682 Flavodoxin_4: Flavodo 26.3 95 0.0021 19.9 3.0 40 33-72 89-128 (156)
95 cd06150 YjgF_YER057c_UK114_lik 26.3 75 0.0016 18.6 2.4 26 29-54 31-56 (105)
96 PRK12615 galactose-6-phosphate 26.2 70 0.0015 21.2 2.4 26 25-50 7-32 (171)
97 PF06308 ErmC: 23S rRNA methyl 26.1 53 0.0011 14.6 1.2 11 1-11 2-12 (27)
98 COG3867 Arabinogalactan endo-1 25.8 99 0.0021 22.9 3.2 44 5-55 209-252 (403)
99 KOG3727 Mitogen inducible gene 25.8 19 0.00042 28.4 -0.4 55 3-60 557-617 (664)
100 PHA01811 hypothetical protein 25.6 12 0.00027 20.7 -1.1 22 3-24 14-35 (78)
101 TIGR02133 RPI_actino ribose 5- 25.5 77 0.0017 20.4 2.4 26 25-50 7-32 (148)
102 PTZ00340 O-sialoglycoprotein e 25.4 1.7E+02 0.0036 21.7 4.4 54 20-73 39-94 (345)
103 PRK09604 UGMP family protein; 25.2 1.6E+02 0.0034 21.3 4.2 41 26-66 49-89 (332)
104 TIGR02522 pilus_cpaD pilus (Ca 25.0 1.3E+02 0.0028 20.3 3.5 31 26-57 84-114 (198)
105 PRK14150 heat shock protein Gr 25.0 69 0.0015 21.6 2.2 26 31-56 124-149 (193)
106 PRK05988 formate dehydrogenase 24.9 40 0.00087 21.8 1.0 35 27-62 89-133 (156)
107 PRK10325 heat shock protein Gr 24.9 70 0.0015 21.6 2.2 27 31-57 125-151 (197)
108 cd04869 ACT_GcvR_2 ACT domains 24.6 1.3E+02 0.0028 16.3 3.0 30 27-56 7-36 (81)
109 cd08757 SAM_PNT_ESE Sterile al 24.6 1.2E+02 0.0026 16.7 2.8 33 28-64 6-38 (68)
110 PRK08622 galactose-6-phosphate 24.5 83 0.0018 20.9 2.4 26 25-50 7-32 (171)
111 TIGR03722 arch_KAE1 universal 24.5 1.6E+02 0.0035 21.1 4.2 40 27-66 44-83 (322)
112 KOG1349 Gpi-anchor transamidas 24.5 97 0.0021 22.3 2.9 37 6-44 143-179 (309)
113 PRK14142 heat shock protein Gr 24.3 70 0.0015 22.2 2.1 28 29-56 110-137 (223)
114 PRK10802 peptidoglycan-associa 24.2 1.1E+02 0.0023 20.1 3.0 27 30-56 123-149 (173)
115 COG3050 HolD DNA polymerase II 24.2 44 0.00096 21.1 1.0 28 34-61 51-78 (133)
116 PF00814 Peptidase_M22: Glycop 24.0 1.4E+02 0.0031 20.8 3.7 52 13-67 12-65 (268)
117 PRK14139 heat shock protein Gr 24.0 80 0.0017 21.2 2.3 27 31-57 115-141 (185)
118 TIGR03725 bact_YeaZ universal 23.9 1.1E+02 0.0024 20.3 3.1 41 23-66 28-68 (202)
119 cd01781 AF6_RA_repeat2 Ubiquit 23.8 92 0.002 18.8 2.4 18 32-49 28-45 (100)
120 PF10865 DUF2703: Domain of un 23.8 1.3E+02 0.0029 18.7 3.1 40 1-47 1-43 (120)
121 PF12017 Tnp_P_element: Transp 23.7 1.7E+02 0.0037 20.4 4.0 34 26-63 192-225 (236)
122 cd04899 ACT_ACR-UUR-like_2 C-t 23.7 1.2E+02 0.0027 15.7 2.9 30 27-56 8-37 (70)
123 cd04900 ACT_UUR-like_1 ACT dom 23.6 1.3E+02 0.0028 16.3 2.9 28 28-55 10-37 (73)
124 PF13511 DUF4124: Domain of un 23.4 84 0.0018 16.3 2.0 12 4-15 15-26 (60)
125 TIGR00655 PurU formyltetrahydr 23.4 2.8E+02 0.0061 19.7 5.7 36 2-39 214-253 (280)
126 PF00370 FGGY_N: FGGY family o 23.2 1.3E+02 0.0028 20.3 3.4 34 27-60 43-80 (245)
127 smart00718 DM4_12 DM4/DM12 fam 23.2 1E+02 0.0022 18.1 2.5 22 26-47 3-24 (95)
128 PRK06934 flavodoxin; Provision 23.1 1.6E+02 0.0034 20.3 3.7 41 32-72 144-184 (221)
129 COG1993 PII-like signaling pro 23.0 67 0.0015 19.7 1.7 31 16-46 6-38 (109)
130 COG0293 FtsJ 23S rRNA methylas 22.9 90 0.0019 21.3 2.4 36 26-66 93-128 (205)
131 PRK14151 heat shock protein Gr 22.6 82 0.0018 20.9 2.2 26 31-56 106-131 (176)
132 PRK14146 heat shock protein Gr 22.3 84 0.0018 21.6 2.2 28 30-57 138-165 (215)
133 PF14926 DUF4498: Domain of un 22.3 1.1E+02 0.0023 21.7 2.7 24 34-58 16-41 (247)
134 PF14201 DUF4318: Domain of un 22.0 1.7E+02 0.0036 16.6 3.6 27 21-47 5-35 (74)
135 cd04873 ACT_UUR-ACR-like ACT d 21.8 1.3E+02 0.0027 15.5 2.6 30 28-57 9-38 (70)
136 TIGR03028 EpsE polysaccharide 21.8 2.6E+02 0.0057 19.1 4.6 35 8-42 26-60 (239)
137 PRK14153 heat shock protein Gr 21.7 88 0.0019 21.2 2.2 28 30-57 117-144 (194)
138 PF07380 Pneumo_M2: Pneumoviru 21.7 1.4E+02 0.003 17.4 2.6 22 27-48 60-81 (89)
139 PRK09605 bifunctional UGMP fam 21.4 2.1E+02 0.0047 21.9 4.5 46 27-72 47-92 (535)
140 TIGR01608 citD citrate lyase a 21.4 1.6E+02 0.0034 17.6 3.0 25 27-51 40-64 (92)
141 PTZ00215 ribose 5-phosphate is 21.2 1E+02 0.0023 19.9 2.4 26 25-50 9-36 (151)
142 PRK15067 ethanolamine ammonia 21.2 95 0.0021 23.8 2.5 35 18-52 189-225 (461)
143 PRK15078 polysaccharide export 21.0 2.1E+02 0.0046 21.2 4.3 40 7-46 119-158 (379)
144 PRK15175 Vi polysaccharide exp 20.9 2.4E+02 0.0053 20.9 4.5 39 8-46 107-145 (355)
145 cd06151 YjgF_YER057c_UK114_lik 20.9 1.1E+02 0.0024 18.7 2.4 25 29-53 43-67 (126)
146 PRK14155 heat shock protein Gr 20.8 1E+02 0.0022 21.1 2.4 28 30-57 100-128 (208)
147 PF07377 DUF1493: Protein of u 20.8 1.5E+02 0.0033 17.8 3.0 27 26-52 38-64 (111)
148 KOG4108 Dynein light chain [Ce 20.5 2.2E+02 0.0048 19.0 3.8 44 27-70 100-143 (174)
149 PF06089 Asparaginase_II: L-as 20.3 3.6E+02 0.0078 19.8 5.4 50 25-74 73-142 (324)
150 PRK14162 heat shock protein Gr 20.1 97 0.0021 20.9 2.2 27 31-57 124-150 (194)
151 cd03527 RuBisCO_small Ribulose 20.0 2.2E+02 0.0047 17.1 3.5 54 3-59 31-87 (99)
No 1
>PF14291 DUF4371: Domain of unknown function (DUF4371)
Probab=99.91 E-value=3.7e-25 Score=151.69 Aligned_cols=66 Identities=45% Similarity=0.739 Sum_probs=64.1
Q ss_pred CEEEEEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh
Q 047520 1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN 66 (102)
Q Consensus 1 l~i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~ 66 (102)
|+++||||++++.++|+||+|++++++||++|++.|++.|+++|||+++|+||+|||||+|+|+++
T Consensus 169 l~i~vRyv~~~~~i~E~Fl~f~~~~~~ta~~l~~~i~~~L~~~~l~~~~~~gq~yDgas~M~G~~~ 234 (235)
T PF14291_consen 169 LSICVRYVDKDGKIKERFLGFVELEDTTAESLFNAIKDVLEKLGLDLSNCRGQCYDGASNMSGKHN 234 (235)
T ss_pred hhheeeeeccCcceeeeeeeeeccCCccHHHHHHHHHHHHHHcCCCHHHcCcccccChHhheeccC
Confidence 689999999888999999999999999999999999999999999999999999999999999986
No 2
>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair]
Probab=97.61 E-value=0.00036 Score=53.80 Aligned_cols=99 Identities=15% Similarity=0.309 Sum_probs=71.9
Q ss_pred CEEEEEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCCccceeeeeecCCcc-----------------ccc
Q 047520 1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN-----------------IQG 63 (102)
Q Consensus 1 l~i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~-----------------m~g 63 (102)
+++..||+|.+|+++..+++|.-.+.++++.|+..+...+.+|+|. .++...+.|++.. +.|
T Consensus 184 ~~~t~h~id~~~~l~~~il~~~~~~~~~~~~i~~~~~~~~~~~~i~-~kv~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~ 262 (641)
T KOG1121|consen 184 MVLTAHYIDRDWELHNKILSFCIPPPHLGKALASVLNECLLEWGIE-KKVFSITVDNVNVSNIETLRDHLKSSNALLLLG 262 (641)
T ss_pred EEEEEEEeccchHhhhheeeeecCCcchHHHHHHHHHHHHHhhChh-heEEEEeecccchhHHHHhhHHHhhcccceecc
Confidence 4688999999999999999999555799999999999999999998 7888899999221 001
Q ss_pred chh-------HHHHHHhhc--hhHHHHHHHHHHHHHHhhccchhhh
Q 047520 64 EFN-------AIVAVAKKH--DQINSFFNVIANVINVVGASCKRRD 100 (102)
Q Consensus 64 ~~~-------~v~~~~~~~--~~~~~~~~~~~~~~~~f~~S~kr~~ 100 (102)
+.. .+...++.. ......+..+++.+.++..|..++.
T Consensus 263 ~~~~~~C~~~~~~~~v~~~l~~~~~~~l~~ir~~v~~vk~s~~~~~ 308 (641)
T KOG1121|consen 263 KFFHVRCFAHILNLIVQEGLKEEFSSLLEKLRESVKYVKSSESRES 308 (641)
T ss_pred eeeeeehhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Confidence 110 111111111 3455666778888888888877654
No 3
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=96.97 E-value=0.0015 Score=42.31 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=43.5
Q ss_pred EEeeeeEEcC--CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHH
Q 047520 16 ERFIGFKHVT--CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVA 70 (102)
Q Consensus 16 e~fl~~~~~~--~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~ 70 (102)
.-|+.-++.. .+||+.|++.+.+.+++.| .+|++.+.+|++++|.+.-..+.+
T Consensus 60 ~~Flksvd~s~~~~~a~~l~~ll~~vIeeVG--~~nVvqVVTDn~~~~~~a~~~L~~ 114 (153)
T PF04937_consen 60 TVFLKSVDASSIIKTAEYLFELLDEVIEEVG--EENVVQVVTDNASNMKKAGKLLME 114 (153)
T ss_pred cEEEEEEecccccccHHHHHHHHHHHHHHhh--hhhhhHHhccCchhHHHHHHHHHh
Confidence 4567777775 4899999999999999987 469999999999999887664443
No 4
>COG0400 Predicted esterase [General function prediction only]
Probab=75.41 E-value=2.7 Score=28.54 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccc
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGE 64 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~ 64 (102)
...++.+.+.+....+++|++.++++..+|.++++|.-.
T Consensus 77 ~~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~ 115 (207)
T COG0400 77 DLETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALS 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHH
Confidence 367788889999999999999999999999999886433
No 5
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=67.80 E-value=6.6 Score=30.57 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCCccceeeeeecCCccc
Q 047520 30 ISLKEALDQLFSKYGLSISRLRKQGYDGASNI 61 (102)
Q Consensus 30 ~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m 61 (102)
+.+-..+.+++++.|++..+++|.++|.++.+
T Consensus 54 ~av~~aVr~~v~~agv~~~~V~gIGvDaTcSl 85 (544)
T COG1069 54 EAVCAAVRDVVAKAGVDPADVVGIGVDATCSL 85 (544)
T ss_pred HHHHHHHHHHHHHcCCChhHeeEEEEcceeee
Confidence 34556667778999999999999999998764
No 6
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=66.36 E-value=12 Score=23.08 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHHHHhh
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKK 74 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~~~~~ 74 (102)
+.+.+.|.+.|.+.|++.|+++..+...++=. ....-.++.+..+.
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~---~K~~E~~l~~~A~~ 56 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASID---IKADEPGLLELAEE 56 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESS---SSS--HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEecc---ccCCCHHHHHHHHH
Confidence 68999999999999999999998888887522 22222355555554
No 7
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.51 E-value=12 Score=24.43 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCC
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGA 58 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dga 58 (102)
..+++.|+.+|..+++++|.|-..+.|+---||
T Consensus 17 G~~s~gla~~ie~af~~~G~PngYI~G~E~sGA 49 (160)
T PF06577_consen 17 GSTSEGLAKVIEKAFKDYGRPNGYILGEEASGA 49 (160)
T ss_pred hhhhHHHHHHHHHHHHHcCCCceEEEeeecccc
Confidence 478999999999999999999888888765444
No 8
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=62.07 E-value=12 Score=23.26 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=27.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeec
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYD 56 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~D 56 (102)
+.+.+.|.+.|.+.|++.||++..+.++++.
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi 43 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATL 43 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEeh
Confidence 6899999999999999999999888887763
No 9
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=58.04 E-value=27 Score=19.80 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHhcCCCc--ccee
Q 047520 28 TAISLKEALDQLFSKYGLSI--SRLR 51 (102)
Q Consensus 28 ta~~i~~~i~~~l~~~~L~~--~~~~ 51 (102)
..+.....+...++++|+.+ +|+.
T Consensus 58 ~~~~~~~~l~~~l~~~gl~ln~~Kt~ 83 (98)
T cd00304 58 QQAVKKRELEEFLARLGLNLSDEKTQ 83 (98)
T ss_pred HHHHHHHHHHHHHHHcCcEEChheeE
Confidence 67788888999999988886 4543
No 10
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=57.93 E-value=15 Score=22.31 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=25.5
Q ss_pred EEEEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHH-HhcCCCc
Q 047520 3 VALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLF-SKYGLSI 47 (102)
Q Consensus 3 i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l-~~~~L~~ 47 (102)
..+||+|+- . +..-+..+++.+.+.+.+.+ +++||.+
T Consensus 54 ~~~rYaDD~-l-------i~~~~~~~~~~~~~~l~~~l~~~~gl~i 91 (119)
T cd01648 54 LLLRLVDDF-L-------LITTSLDKAIKFLNLLLRGFINQYKTFV 91 (119)
T ss_pred eEEEEeCcE-E-------EEeCCHHHHHHHHHHHHHhhHHhhCeEE
Confidence 467888741 1 11122467888999999998 8888875
No 11
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=57.18 E-value=6.6 Score=21.62 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=12.1
Q ss_pred EEEEcCCCeEEEEe
Q 047520 5 LRYADKNGYVFERF 18 (102)
Q Consensus 5 vryv~~~~~i~e~f 18 (102)
.-|||+|+.++|.|
T Consensus 25 ~syVd~~G~L~EpF 38 (63)
T PF13127_consen 25 GSYVDEDGVLHEPF 38 (63)
T ss_pred cceECCCCeEeccc
Confidence 46999999999984
No 12
>PF07872 DUF1659: Protein of unknown function (DUF1659); InterPro: IPR012454 This family consists of hypothetical bacterial proteins of unknown function
Probab=56.52 E-value=26 Score=17.90 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=26.2
Q ss_pred EEEEEEE---cCCCeEEEEeeeeEEcC-CCChHHHHHH
Q 047520 2 VVALRYA---DKNGYVFERFIGFKHVT-CTTAISLKEA 35 (102)
Q Consensus 2 ~i~vryv---~~~~~i~e~fl~~~~~~-~~ta~~i~~~ 35 (102)
.+.++|. |++|++.-+--.|-.+. +.+.++|+++
T Consensus 7 ~L~l~~~~G~d~~Gkpi~k~ks~~nvk~~Atdedl~~V 44 (47)
T PF07872_consen 7 SLRLKYQTGVDENGKPIFKTKSFSNVKPDATDEDLYDV 44 (47)
T ss_pred EEEEEEEcccCCCCCEEEEeeehhhcCCCCCHHHHHHH
Confidence 3567776 45688888888888886 8999999875
No 13
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=54.86 E-value=9.9 Score=18.80 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=16.4
Q ss_pred HHHHHHhcCCCccceeeeeecCC
Q 047520 36 LDQLFSKYGLSISRLRKQGYDGA 58 (102)
Q Consensus 36 i~~~l~~~~L~~~~~~g~~~Dga 58 (102)
.....+++||+++.+.|-+.+|-
T Consensus 9 ar~la~e~gidl~~v~gtG~~Gr 31 (39)
T PF02817_consen 9 ARKLAAELGIDLSQVKGTGPGGR 31 (39)
T ss_dssp HHHHHHHTT--GGGSSSSSTTSB
T ss_pred HHHHHHHcCCCcccccccCCCCc
Confidence 45678899999999988777663
No 14
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=54.21 E-value=18 Score=22.88 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=24.9
Q ss_pred EEEEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCCc
Q 047520 3 VALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSI 47 (102)
Q Consensus 3 i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~~ 47 (102)
.++||+|+- .+ ..-+....+.+.+.+.+.+++.||.+
T Consensus 84 ~~~RY~DD~-~i-------~~~~~~~~~~~~~~i~~~l~~~gL~l 120 (158)
T cd01646 84 DYVRYVDDI-RI-------FADSKEEAEEILEELKEFLAELGLSL 120 (158)
T ss_pred eEEEecCcE-EE-------EcCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 467898842 11 11113456788999999999998886
No 15
>PF00600 Flu_NS1: Influenza non-structural protein (NS1); InterPro: IPR000256 NS1 is a homodimeric RNA-binding protein found in influenza virus that is required for viral replication. NS1 binds polyA tails of mRNA keeping them in the nucleus. NS1 inhibits pre-mRNA splicing by tightly binding to a specific stem-bulge of U6 snRNA [].; GO: 0003723 RNA binding; PDB: 2Z0A_C 3P39_E 3P38_C 3P31_C 3M8A_H 3M5R_D 3EE9_B 3KWI_A 3KWG_B 2RHK_A ....
Probab=54.08 E-value=27 Score=23.42 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=25.7
Q ss_pred EEEEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHH
Q 047520 3 VALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLF 40 (102)
Q Consensus 3 i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l 40 (102)
+.+|-+.+++.|.-+.--+..++.||.|++.++|--.+
T Consensus 145 illRAFTeegaivgEIsPlpslpGht~EDVKnAigvli 182 (217)
T PF00600_consen 145 ILLRAFTEEGAIVGEISPLPSLPGHTNEDVKNAIGVLI 182 (217)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSS---HHHHHHHHHHHH
T ss_pred hhhhhhccCCeeEeeeccCCCCCCCCchhHHHhhhhcc
Confidence 45777888887777666666778999999999987665
No 16
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=53.46 E-value=39 Score=22.52 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHHhcCCCc
Q 047520 28 TAISLKEALDQLFSKYGLSI 47 (102)
Q Consensus 28 ta~~i~~~i~~~l~~~~L~~ 47 (102)
.++.+.+.+.+.|.+.||.+
T Consensus 155 ~~~~~~~~i~~~l~~~gL~l 174 (214)
T cd03487 155 ALDKLLEIIRSILSEEGFKI 174 (214)
T ss_pred HHHHHHHHHHHHHHHCCcee
Confidence 68899999999999888875
No 17
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.46 E-value=22 Score=19.58 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.0
Q ss_pred EcCCCChHHHHHHHHHHHHhcCCCccceeeeeecCC
Q 047520 23 HVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGA 58 (102)
Q Consensus 23 ~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dga 58 (102)
.+...+..+|...+...|.+.|+++.++.-..++|-
T Consensus 3 tv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~ 38 (75)
T cd04870 3 TVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGR 38 (75)
T ss_pred EEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCe
Confidence 344567778999999999999999999887777653
No 18
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.70 E-value=25 Score=19.17 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=28.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccceeeeeecCCcc
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~ 60 (102)
...+..+|...|.+.|.+.|+++.++....+++...
T Consensus 5 ~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~ 40 (74)
T cd04875 5 SCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGR 40 (74)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCe
Confidence 345667899999999999999999987777655544
No 19
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=50.95 E-value=29 Score=20.45 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=30.6
Q ss_pred EEEEEEcCCCeEEEEeeeeEEcC--CCChHHHHHHHHHHHHhcCCCccceeee
Q 047520 3 VALRYADKNGYVFERFIGFKHVT--CTTAISLKEALDQLFSKYGLSISRLRKQ 53 (102)
Q Consensus 3 i~vryv~~~~~i~e~fl~~~~~~--~~ta~~i~~~i~~~l~~~~L~~~~~~g~ 53 (102)
+++-+..+++.+.|-|+..-..- ....++|...|.-.|+ .|.+++.++.+
T Consensus 12 vtv~~d~d~g~p~Evf~~~~~~Gg~~~~~~ai~rliS~~Lr-~G~~~~~ii~~ 63 (95)
T PF12637_consen 12 VTVNFDEDNGRPFEVFINVGKAGGCSGNLEAIARLISLALR-SGVPPEEIIDQ 63 (95)
T ss_pred EEEEeeCCCCcceEEEEecCcCCCchHHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence 34444433478999888765553 3455666666655555 68887655544
No 20
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=49.20 E-value=14 Score=20.62 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeee
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQ 53 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~ 53 (102)
..|+.+-+++..++++.||+.+.|.-.
T Consensus 18 rpg~ti~d~L~~~~~kr~L~~~~~~V~ 44 (71)
T PF02196_consen 18 RPGMTIRDALSKACKKRGLNPECCDVR 44 (71)
T ss_dssp -TTSBHHHHHHHHHHTTT--CCCEEEE
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 468889999999999999998876544
No 21
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=48.41 E-value=22 Score=23.65 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=30.1
Q ss_pred EcCCCChHHHHHHHHHHHHhcCCCccceeeeeecCC
Q 047520 23 HVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGA 58 (102)
Q Consensus 23 ~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dga 58 (102)
.+...+-.+|.+.+.+.|...|++++++.++.|--.
T Consensus 96 ~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~ 131 (176)
T COG2716 96 YVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAP 131 (176)
T ss_pred EEEecCCccHHHHHHHHHHhcCCchhhceeeeeecC
Confidence 334567778999999999999999999999988543
No 22
>COG5461 Type IV pili component [Cell motility and secretion]
Probab=46.79 E-value=34 Score=23.42 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccc
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGE 64 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~ 64 (102)
.++|..+...|.+.+...|++..+++-..||-+++--|.
T Consensus 98 ~~tA~~m~~eir~~l~~~Gv~~~ri~~~~y~a~~~~d~a 136 (224)
T COG5461 98 EVTASRMAKEIRRLLAGSGVDRARIRVVNYDASSQEDGA 136 (224)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcceeEEEEecccccCCCc
Confidence 478999999999999999999999999999998876555
No 23
>PF02914 DDE_2: Bacteriophage Mu transposase; InterPro: IPR004189 This transposase is essential for integration, replication-transposition and excision of Bacteriophage Mu DNA. Transposition requires transposase and a transposition enhancer, and the DNA can be transposed into multiple sites in bacterial genomes. The crystal structure of the core domain of Mu transposase, MuA, has been determined. The first of two subdomains contains the active site and, despite very limited sequence homology, exhibits a striking similarity to the core domain of Human immunodeficiency virus 1 integrase. The enzymatic activity of MuA is known to be activated by formation of a DNA-bound tetramer of the protein []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 1BCO_A 1BCM_B.
Probab=46.40 E-value=45 Score=23.06 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=25.1
Q ss_pred eeeeEEcCCCChHHHHHHHHHHHHhcCCCccceeeeeecCCcc
Q 047520 18 FIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60 (102)
Q Consensus 18 fl~~~~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~ 60 (102)
+|++.-..+.+++.|-.+|.+.+..+|||- -.-.|++..
T Consensus 44 Ilg~r~~~seNs~~vrlsl~d~i~~yGIP~----~l~iDNGr~ 82 (219)
T PF02914_consen 44 ILGWRIDKSENSDTVRLSLGDMIERYGIPK----HLYIDNGRA 82 (219)
T ss_dssp EEEEEEESS--HHHHHHHHHHHHHHH-EES----EEE---SSS
T ss_pred eEEEEecCCcCHHHHHHHHHHHHHhcCCCc----eEEEeCCHH
Confidence 345555567899999999999999999993 345677665
No 24
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=45.33 E-value=44 Score=20.11 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccc
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGE 64 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~ 64 (102)
..+++.+...+.+.|++.|++.+++-.+..+|.....+.
T Consensus 21 ~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D 59 (119)
T PF02801_consen 21 APNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGD 59 (119)
T ss_dssp STTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHH
T ss_pred CcCHHHHHHHHHHHHhhhccccccceeeeeeccccccch
Confidence 457899999999999999999999888888887765444
No 25
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=45.21 E-value=39 Score=19.10 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=28.4
Q ss_pred EcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhc
Q 047520 8 ADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKY 43 (102)
Q Consensus 8 v~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~ 43 (102)
|+.+|.+.=.++|=+++.+.|-+.+.+.|.+.++++
T Consensus 35 V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~~ 70 (82)
T PF02563_consen 35 VDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQKY 70 (82)
T ss_dssp --TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTTT
T ss_pred ECCCCcEeecccceEEECCCCHHHHHHHHHHHHHHH
Confidence 677888888899999999999999999999999884
No 26
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=44.47 E-value=44 Score=24.17 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=28.2
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcc-ceeeeeecCCcc
Q 047520 24 VTCTTAISLKEALDQLFSKYGLSIS-RLRKQGYDGASN 60 (102)
Q Consensus 24 ~~~~ta~~i~~~i~~~l~~~~L~~~-~~~g~~~Dgas~ 60 (102)
+.+...+.|.+.+.+.+.+.|+.-+ ....-.||||++
T Consensus 315 latenf~eI~~~mv~~F~K~G~kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 315 LATENFQEIGEKMVEAFWKVGHKCSVASLKPALDGAGV 352 (355)
T ss_pred EecCcHHHHHHHHHHHHHhhCceeeeEeeccccCCcce
Confidence 3457889999999999999998743 223338999875
No 27
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=44.15 E-value=64 Score=18.72 Aligned_cols=47 Identities=28% Similarity=0.188 Sum_probs=34.9
Q ss_pred EEeeeeEEcCCC-ChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccc
Q 047520 16 ERFIGFKHVTCT-TAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGE 64 (102)
Q Consensus 16 e~fl~~~~~~~~-ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~ 64 (102)
.+++-...+.+. +++.+...+...++..+-.. ..-..+|+++.+.+.
T Consensus 35 S~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--p~~i~tD~g~~f~~~ 82 (120)
T PF00665_consen 35 SRFIYAFPVSSKETAEAALRALKRAIEKRGGRP--PRVIRTDNGSEFTSH 82 (120)
T ss_dssp TTEEEEEEESSSSHHHHHHHHHHHHHHHHS-SE---SEEEEESCHHHHSH
T ss_pred CCcEEEEEeeccccccccccccccccccccccc--ceecccccccccccc
Confidence 345555666654 99999999999999987631 467889999988766
No 28
>smart00455 RBD Raf-like Ras-binding domain.
Probab=44.05 E-value=17 Score=20.28 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeee
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQG 54 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~ 54 (102)
..|..+.+++..++++.||+.+.+.-.-
T Consensus 17 rpg~tl~e~L~~~~~kr~l~~~~~~v~~ 44 (70)
T smart00455 17 RPGKTVRDALAKALKKRGLNPECCVVRL 44 (70)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 5677899999999999999987765554
No 29
>PF09476 Pilus_CpaD: Pilus biogenesis CpaD protein (pilus_cpaD); InterPro: IPR019027 Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known.
Probab=42.67 E-value=58 Score=22.01 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhcCCCccceeeeeecCCc
Q 047520 29 AISLKEALDQLFSKYGLSISRLRKQGYDGAS 59 (102)
Q Consensus 29 a~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas 59 (102)
+......|.+.|..+|++..++....|+-..
T Consensus 91 a~~~~~~i~~~l~~~Gv~~~~i~~~~y~~~~ 121 (203)
T PF09476_consen 91 ASAAAAQIRALLAAAGVPPSNISVRSYQASG 121 (203)
T ss_pred HHHHHHHHHHHHHHcCCChhheeeeccCcCC
Confidence 8999999999999999999999888875443
No 30
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=41.96 E-value=19 Score=18.99 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHHhcCCCccce
Q 047520 28 TAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 28 ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
+|.++-++|...++++|++.+.+
T Consensus 3 ~gkt~eeAi~~A~~~l~~~~~~~ 25 (52)
T PF14804_consen 3 EGKTVEEAIEKALKELGVPREEL 25 (52)
T ss_dssp EESSHHHHHHHHHHHTT--GGGE
T ss_pred eECCHHHHHHHHHHHhCCChHHE
Confidence 57788899999999999997665
No 31
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=41.49 E-value=20 Score=20.42 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeeee
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQGY 55 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~~ 55 (102)
..|+.|.+++...+++.||+.+.|--+-.
T Consensus 17 rpG~ti~d~L~kllekRgl~~~~~~vf~~ 45 (73)
T cd01817 17 RPGESIRDLLSGLCEKRGINYAAVDLFLV 45 (73)
T ss_pred cCCCCHHHHHHHHHHHcCCChhHEEEEEe
Confidence 57889999999999999999876654443
No 32
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=41.37 E-value=60 Score=17.62 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=26.0
Q ss_pred EEEEEEcCCCe--EEEEeeeeEEcC-CCChHHHHHHHHHHH
Q 047520 3 VALRYADKNGY--VFERFIGFKHVT-CTTAISLKEALDQLF 40 (102)
Q Consensus 3 i~vryv~~~~~--i~e~fl~~~~~~-~~ta~~i~~~i~~~l 40 (102)
+.|||+++++. +-. .-+.++ +.|.+.|-+.+...|
T Consensus 2 v~v~F~t~~~~~~~~~---~~~~VP~~~t~~~Ls~LvN~LL 39 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPG---TPISVPSNITRKELSELVNQLL 39 (65)
T ss_pred EEEEEEcCCCCccCCC---CCEEEeCCCCHHHHHHHHHHHh
Confidence 57899988762 222 445555 789999999999988
No 33
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=40.26 E-value=32 Score=22.07 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|++.|+++|.++.++
T Consensus 7 sDhaG~~lK~~l~~~L~~~g~eV~D~ 32 (141)
T PRK12613 7 ADAHGNALKELIKSFLQEEGYDIIDV 32 (141)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEEc
Confidence 48999999999999999999876554
No 34
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=40.03 E-value=31 Score=22.43 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=27.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
.|+.+..+.+.|.+.|++.|+..-++-+..+++
T Consensus 7 ~Dhag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~ 39 (151)
T COG0698 7 SDHAGYELKEIIIDHLKSKGYEVIDFGTYTDEG 39 (151)
T ss_pred cCcccHHHHHHHHHHHHHCCCEEEeccccCCCC
Confidence 489999999999999999999887766665554
No 35
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=39.43 E-value=19 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=26.3
Q ss_pred EEEEeeeeEEcCCCC------------hHHHHHHHHHHHHhcCCC
Q 047520 14 VFERFIGFKHVTCTT------------AISLKEALDQLFSKYGLS 46 (102)
Q Consensus 14 i~e~fl~~~~~~~~t------------a~~i~~~i~~~l~~~~L~ 46 (102)
+.|+|+.+..++..+ -+.+++.|.+.|+++|++
T Consensus 5 ~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~ 49 (410)
T TIGR01882 5 LLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQ 49 (410)
T ss_pred HHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCc
Confidence 457888888886433 358999999999999996
No 36
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.07 E-value=37 Score=22.72 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
..|+.+++.++...++++|||--.+.|+---|
T Consensus 62 G~Tsggla~vvEkaF~~yGlPnGYilGeEGSG 93 (205)
T COG5400 62 GETSGGLAKVVEKAFQSYGLPNGYILGEEGSG 93 (205)
T ss_pred ccccchHHHHHHHHHHhcCCCCceEecccccc
Confidence 46889999999999999999987777764333
No 37
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=38.59 E-value=75 Score=17.95 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHhcCCCccceeeeeecCC
Q 047520 29 AISLKEALDQLFSKYGLSISRLRKQGYDGA 58 (102)
Q Consensus 29 a~~i~~~i~~~l~~~~L~~~~~~g~~~Dga 58 (102)
++.-++.+.+.|.+.|++.+.+.-++|...
T Consensus 52 S~~RA~~V~~~L~~~gi~~~ri~~~~~G~~ 81 (97)
T PF00691_consen 52 SQRRAEAVKQYLVENGIPPERISVVGYGES 81 (97)
T ss_dssp HHHHHHHHHHHHHHTTSSGGGEEEEEETTT
T ss_pred HHHHHHHHHHHHHHcCCChHhEEEEEEccC
Confidence 456678899999999999999977777553
No 38
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=38.42 E-value=86 Score=23.20 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=48.7
Q ss_pred EEEeeeeEEcC--CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHHHHhh
Q 047520 15 FERFIGFKHVT--CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKK 74 (102)
Q Consensus 15 ~e~fl~~~~~~--~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~~~~~ 74 (102)
+.++=|+++-. ++-.+.|...|.+.|++-|++.+++=+++|=.++-|.|...+.....|.
T Consensus 35 h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~ 96 (342)
T COG0533 35 HARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKA 96 (342)
T ss_pred cCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHH
Confidence 45555665553 5778999999999999999999999999999999999998866655543
No 39
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=38.26 E-value=36 Score=21.85 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|++.|++.|.++.++
T Consensus 7 sDh~G~~lK~~i~~~L~~~G~eV~D~ 32 (141)
T TIGR01118 7 SDLAGKRLKDVIKNFLVDNGFEVIDV 32 (141)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEEc
Confidence 48999999999999999999876554
No 40
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=36.99 E-value=43 Score=21.35 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=23.4
Q ss_pred CCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhc
Q 047520 10 KNGYVFERFIGFKHVTCTTAISLKEALDQLFSKY 43 (102)
Q Consensus 10 ~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~ 43 (102)
+++++. .|+.=.++++.+++.|.+.|.+.+.++
T Consensus 103 KdGelv-h~ieRh~IEGr~a~~Ia~~L~~af~~~ 135 (136)
T PF06491_consen 103 KDGELV-HFIERHHIEGRPAEEIAENLQDAFDEY 135 (136)
T ss_dssp ETTEEE-EEE-GGGTTTS-HHHHHHHHHHHHHHH
T ss_pred eCCEEE-EEeehhhcCCCCHHHHHHHHHHHHHhh
Confidence 355543 455556678899999999999999875
No 41
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=36.98 E-value=20 Score=20.46 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCCccce
Q 047520 35 ALDQLFSKYGLSISRL 50 (102)
Q Consensus 35 ~i~~~l~~~~L~~~~~ 50 (102)
.|++..++.|||++++
T Consensus 59 LikeAv~ELgLDFsKv 74 (82)
T PF11212_consen 59 LIKEAVEELGLDFSKV 74 (82)
T ss_pred HHHHHHHHhCCcHHHH
Confidence 5677888888887765
No 42
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=36.63 E-value=23 Score=23.94 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=31.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN 66 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~ 66 (102)
|..+|..+.+.|..+.++|+-+-==++|+++ ||..|--.++
T Consensus 47 P~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSF-GADvlP~~~n 87 (192)
T PF06057_consen 47 PEQTAADLARIIRHYRARWGRKRVVLIGYSF-GADVLPFIYN 87 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEeecC-CchhHHHHHh
Confidence 3578899999999999999987556677777 6666655555
No 43
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=36.47 E-value=48 Score=24.00 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=27.5
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccceeeeee
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRLRKQGY 55 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~ 55 (102)
.+.+.+.|.+.|.+.|++.||++..+.+.++
T Consensus 203 rg~~~e~i~~ai~~~L~~~~i~~~~i~~iat 233 (315)
T PRK05788 203 KGVSAEEIAEAVERALEALNIDPRAVKAIAS 233 (315)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHccEEee
Confidence 4789999999999999999999888877765
No 44
>PLN02828 formyltetrahydrofolate deformylase
Probab=36.26 E-value=1.6e+02 Score=20.98 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=24.9
Q ss_pred EEEEEEEcCC---CeEEEEeeeeEEcC-CCChHHHHHHHHHH
Q 047520 2 VVALRYADKN---GYVFERFIGFKHVT-CTTAISLKEALDQL 39 (102)
Q Consensus 2 ~i~vryv~~~---~~i~e~fl~~~~~~-~~ta~~i~~~i~~~ 39 (102)
.+++|||+++ |.|-+. .-+++. +.|++++.+.+.+.
T Consensus 201 G~TvH~V~~~lD~GpII~Q--~~v~V~~~dt~~~L~~r~~~~ 240 (268)
T PLN02828 201 GATSHFVTEELDAGPIIEQ--MVERVSHRDNLRSFVQKSENL 240 (268)
T ss_pred EEEEEEEcCCCCCCCeeEE--EEEecCCCCCHHHHHHHHHHH
Confidence 4689999874 555544 556664 78899988766553
No 45
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=35.96 E-value=97 Score=18.77 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEeeeeEEcCCCChHHHHHHHHHHHHhcCCC
Q 047520 16 ERFIGFKHVTCTTAISLKEALDQLFSKYGLS 46 (102)
Q Consensus 16 e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~ 46 (102)
-++++|..+.+..++.+...+.... ++|++
T Consensus 38 ~elvgf~~CgGCpg~~~~~~~~~l~-~~~~d 67 (107)
T PF08821_consen 38 VELVGFFTCGGCPGRKLVRRIKKLK-KNGAD 67 (107)
T ss_pred eEEEEEeeCCCCChhHHHHHHHHHH-HCCCC
Confidence 6789999998888999998888777 88888
No 46
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=35.31 E-value=43 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|.+.|+++|.++.++
T Consensus 7 sDhaG~~lK~~l~~~L~~~G~eV~D~ 32 (142)
T PRK08621 7 ADKAGFELKEVVKDYLEDNKYEVVDV 32 (142)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEEC
Confidence 48999999999999999999876554
No 47
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=35.26 E-value=1e+02 Score=20.08 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHhcCCCccceee
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRK 52 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g 52 (102)
.-.+.+.+.+.+.+++.|++.++++-
T Consensus 146 ~l~~~~~~~~~~~~~~~G~d~~~l~~ 171 (177)
T PRK10477 146 TISDEVKQQMLAVATREGFDVSKLIW 171 (177)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHeEE
Confidence 44578888999999999999888764
No 48
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=35.14 E-value=20 Score=23.67 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHHH----------hcCCCccceeeeeecCCcccc
Q 047520 27 TTAISLKEALDQLFS----------KYGLSISRLRKQGYDGASNIQ 62 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~----------~~~L~~~~~~g~~~Dgas~m~ 62 (102)
.-|+.|.+.+.+.|. ++.|....|.|.| |.|++|.
T Consensus 102 ~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C-~~AP~~~ 146 (169)
T PRK07571 102 KGSAAILEDLENELGIKAGETTADGKLSLLTARCLGAC-GIAPAVV 146 (169)
T ss_pred CCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCcc-CCCCeEE
Confidence 467888888888874 2446678899999 6667654
No 49
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=34.75 E-value=50 Score=19.57 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHhcCCCccc
Q 047520 28 TAISLKEALDQLFSKYGLSISR 49 (102)
Q Consensus 28 ta~~i~~~i~~~l~~~~L~~~~ 49 (102)
-|.+|.+-+..+|+.|||+-+.
T Consensus 43 GA~diq~DL~kiL~~W~lteee 64 (90)
T PF11691_consen 43 GARDIQKDLDKILQKWGLTEEE 64 (90)
T ss_pred CHHHHHHHHHHHHHHcCCCHHH
Confidence 4788999999999999998543
No 50
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B.
Probab=34.19 E-value=19 Score=25.05 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=23.3
Q ss_pred EEeeeeEEcC-CCChHHHHHHHHHHHHhcCCCc
Q 047520 16 ERFIGFKHVT-CTTAISLKEALDQLFSKYGLSI 47 (102)
Q Consensus 16 e~fl~~~~~~-~~ta~~i~~~i~~~l~~~~L~~ 47 (102)
..++|..|+| +..-|+++..|...+++++||+
T Consensus 12 ~~lvg~MPLPYSr~YEGLATGl~~~f~~~~ip~ 44 (232)
T PF14503_consen 12 GNLVGAMPLPYSRRYEGLATGLYEQFEESGIPL 44 (232)
T ss_dssp SSEEEEE----SHHHHHHHHHHHCTTT--TS-E
T ss_pred CceEEECCCCchhhhHHHHHHHHHHhccCCCce
Confidence 4578999999 8899999999999999999995
No 51
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=33.51 E-value=1e+02 Score=22.00 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN 66 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~ 66 (102)
..-++.|...+.++|++.|++++++-++++..++-+.....
T Consensus 46 ~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglr 86 (305)
T TIGR00329 46 RHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLR 86 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHH
Confidence 45789999999999999999999998888887775544444
No 52
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=33.43 E-value=1.1e+02 Score=19.54 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=32.6
Q ss_pred EcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhc
Q 047520 8 ADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKY 43 (102)
Q Consensus 8 v~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~ 43 (102)
|+.++.+.=-++|=+.+.+.|.+.+.+.|.+.|++.
T Consensus 25 V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~~ 60 (165)
T TIGR03027 25 VRPDGKITTPLVGDLVASGKTPTQLARDIEEKLAKY 60 (165)
T ss_pred ECCCCeEeecccCeEEECCCCHHHHHHHHHHHHHHh
Confidence 577888888899999999999999999999999875
No 53
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=33.05 E-value=50 Score=21.19 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|++.|+++|.++.++
T Consensus 6 sDhaG~~lK~~l~~~L~~~g~eV~D~ 31 (143)
T TIGR01120 6 SDHAGFILKEEIKAFLVERGVKVIDK 31 (143)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 38999999999999999999876553
No 54
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=32.64 E-value=72 Score=19.61 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=25.7
Q ss_pred eEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCCccce
Q 047520 13 YVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 13 ~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.++|-.+.+- ++..||..+.-|.+.|+..++..+++
T Consensus 56 ~i~EVIlA~~--pt~EGe~Ta~yi~~~l~~~~~kvsRl 91 (112)
T cd01025 56 QVKEVILATN--PTVEGEATALYIAKLLKDFGVKVTRL 91 (112)
T ss_pred CCcEEEEecC--CCchHHHHHHHHHHHHhHcCCCeEEE
Confidence 4566554443 35788888888889998888876654
No 55
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=32.53 E-value=1e+02 Score=18.22 Aligned_cols=20 Identities=10% Similarity=0.406 Sum_probs=17.8
Q ss_pred CChHHHHHHHHHHHHhcCCC
Q 047520 27 TTAISLKEALDQLFSKYGLS 46 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~ 46 (102)
.|+--+...+.+.|+++|++
T Consensus 13 gSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 13 GSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cHHHHHHHHHHHHHHHcCCC
Confidence 56778899999999999997
No 56
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=32.34 E-value=60 Score=17.59 Aligned_cols=36 Identities=17% Similarity=-0.063 Sum_probs=26.6
Q ss_pred CChHHHHHHHHHHHHhcCCC------ccceeeeeecCCcccc
Q 047520 27 TTAISLKEALDQLFSKYGLS------ISRLRKQGYDGASNIQ 62 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~------~~~~~g~~~Dgas~m~ 62 (102)
.-|+.+.+.+.+.+...+++ ...|.|.+..|...+.
T Consensus 14 ~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~C~~~P~v~i 55 (77)
T cd02980 14 RGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVV 55 (77)
T ss_pred CCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCcccCCCEEEE
Confidence 34899999999999887643 3578888876665543
No 57
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=32.19 E-value=60 Score=21.76 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=31.4
Q ss_pred EEcCCCChHHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 22 KHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 22 ~~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
+.+...+.-+|...+...|.+.|+++.++...+|..
T Consensus 98 v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a 133 (190)
T PRK11589 98 VQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPA 133 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecC
Confidence 444577888999999999999999999999999864
No 58
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=32.01 E-value=74 Score=18.60 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHhcCCCccceeeee
Q 047520 28 TAISLKEALDQLFSKYGLSISRLRKQG 54 (102)
Q Consensus 28 ta~~i~~~i~~~l~~~~L~~~~~~g~~ 54 (102)
-.+..++.|...|++.|.++++++-..
T Consensus 27 Q~~~v~~ni~~~L~~aG~~~~dVv~~~ 53 (101)
T cd06155 27 QMESIFSKLREILQSNGLSLSDILYVT 53 (101)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHEEEEE
Confidence 345778888999999999998887764
No 59
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).
Probab=31.88 E-value=1.4e+02 Score=19.44 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHhcCCCc--cceeeeee
Q 047520 29 AISLKEALDQLFSKYGLSI--SRLRKQGY 55 (102)
Q Consensus 29 a~~i~~~i~~~l~~~~L~~--~~~~g~~~ 55 (102)
++.+.+.+.+.+++.||.+ +|..-..+
T Consensus 186 ~~~~~~~i~~~~~~~gl~ln~~Kt~i~~~ 214 (226)
T cd01651 186 AEEIKELIREFLEELGLELNPEKTRITHF 214 (226)
T ss_pred HHHHHHHHHHHHHHcCCeechhhcceeec
Confidence 7888899999999999865 45554444
No 60
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=31.86 E-value=52 Score=21.15 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|.+.|++.|.++.++
T Consensus 5 sDhaG~~lK~~l~~~L~~~g~eV~D~ 30 (144)
T TIGR00689 5 SDHAGLELKSEIIEHLKQKGHEVIDC 30 (144)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEEc
Confidence 38999999999999999999877555
No 61
>PRK14143 heat shock protein GrpE; Provisional
Probab=31.84 E-value=45 Score=23.29 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 30 ISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 30 ~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
+.+++.|.++|+++||..=...|+-||-
T Consensus 152 e~i~k~l~~~L~k~GV~~i~~~G~~FDP 179 (238)
T PRK14143 152 QGLYKQLVDVLKRLGVSPMRVVGQEFDP 179 (238)
T ss_pred HHHHHHHHHHHHHCCCeeeCCCCCCCCh
Confidence 3578899999999999866667888875
No 62
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function.
Probab=31.75 E-value=1.3e+02 Score=23.05 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHH-HhcCCCccceeeeeecCCc
Q 047520 27 TTAISLKEALDQLF-SKYGLSISRLRKQGYDGAS 59 (102)
Q Consensus 27 ~ta~~i~~~i~~~l-~~~~L~~~~~~g~~~Dgas 59 (102)
..++.+.+.+.+.+ +.++++....+-...|||+
T Consensus 235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~ 268 (470)
T PF06782_consen 235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGAS 268 (470)
T ss_pred cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcH
Confidence 55677888888888 6688887767888999998
No 63
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=31.16 E-value=44 Score=28.27 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=18.9
Q ss_pred EEEEEEcCCCeEEEEeeeeEEcC-CCChHHHH
Q 047520 3 VALRYADKNGYVFERFIGFKHVT-CTTAISLK 33 (102)
Q Consensus 3 i~vryv~~~~~i~e~fl~~~~~~-~~ta~~i~ 33 (102)
+++||||+.+++.|+ ++++ +.+-.+|+
T Consensus 1239 ~~iryvdd~g~~te~----yPfNpNGS~~gIA 1266 (1320)
T KOG1907|consen 1239 VCIRYVDDYGNVTEL----YPFNPNGSPDGIA 1266 (1320)
T ss_pred eEEEEecCCCCEeee----cccCCCCCcccce
Confidence 689999999988775 4553 55544444
No 64
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=31.00 E-value=55 Score=21.12 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|.+.|++.|.+..++
T Consensus 7 sDhaG~~lK~~l~~~L~~~g~eV~D~ 32 (148)
T PRK05571 7 SDHAGFELKEEIIEHLEELGHEVIDL 32 (148)
T ss_pred eCCchHHHHHHHHHHHHHCCCEEEEc
Confidence 48999999999999999999877554
No 65
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.94 E-value=88 Score=17.11 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCC
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGA 58 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dga 58 (102)
..+-.+++..|...|.+.|+++-...-.+.||-
T Consensus 7 ~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~ 39 (74)
T cd04925 7 GTDRPGLLSEVFAVLADLHCNVVEARAWTHNGR 39 (74)
T ss_pred ECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCE
Confidence 345678999999999999999876666666443
No 66
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=30.84 E-value=1.3e+02 Score=21.52 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=38.5
Q ss_pred eeEEcC--CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHH
Q 047520 20 GFKHVT--CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAI 68 (102)
Q Consensus 20 ~~~~~~--~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v 68 (102)
||.+-+ .|--..|...+++.|++-+++.+++-..||--++-|-.-.+++
T Consensus 39 GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD~icyTKGPGmgaPL~~v 89 (336)
T KOG2708|consen 39 GFLPRDTARHHRAWILGLVKQALEEAGVTSDDIDCICYTKGPGMGAPLSVV 89 (336)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEcCCCCCCCchhhH
Confidence 555543 3555678888999999999999999999999999887766633
No 67
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.80 E-value=47 Score=21.93 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 31 SLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 31 ~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
-+.+.+..+|+++||..=...|..||=
T Consensus 101 mi~k~l~~~L~~~Gv~~i~~~G~~FDP 127 (172)
T PRK14147 101 LTYKQLLKVAADNGLTLLDPVGQPFNP 127 (172)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCCh
Confidence 366778889999999866667877763
No 68
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=30.69 E-value=1.1e+02 Score=17.87 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=29.2
Q ss_pred eEEcCCCChHHHHHHHHHHHHhcCCCccceeeeeecCCc
Q 047520 21 FKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGAS 59 (102)
Q Consensus 21 ~~~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas 59 (102)
+..++.+++..+...|..+++++ +-..++-.++|+..
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~--p~~YVRlig~D~~~ 72 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEH--PGEYVRLIGIDPKA 72 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC--CCCeEEEEEEeCCc
Confidence 33444578899999999999998 45788889999863
No 69
>KOG4024 consensus Complement component 1, Q subcomponent binding protein/mRNA splicing factor SF2, subunit P32 [Defense mechanisms]
Probab=30.52 E-value=1.9e+02 Score=20.22 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 047520 31 SLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKKHDQINSFFNVIANVINVVG 93 (102)
Q Consensus 31 ~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~ 93 (102)
.|++.+.+.|++.||+-.-+ .-+.+.. -..+-..++++++++-.|++
T Consensus 218 ~LyDlL~~~LeerG~d~~Fa---------------~~Lv~la-Ta~EH~~YIglLeklkkF~~ 264 (266)
T KOG4024|consen 218 DLYDLLFVYLEERGLDARFA---------------KTLVALA-TAYEHSQYIGLLEKLKKFIS 264 (266)
T ss_pred HHHHHHHHHHHHcCccHHHH---------------HHHHHHH-HHhhhHHHHHHHHHHHHHhc
Confidence 78999999999999983111 0111111 11244567788888887775
No 70
>PRK14878 UGMP family protein; Provisional
Probab=30.38 E-value=1.3e+02 Score=21.68 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHH
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVA 70 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~ 70 (102)
...+.|-..+.++|++-|++++++-++++-..+-+.+...+...
T Consensus 43 ~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~ 86 (323)
T PRK14878 43 HHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGAT 86 (323)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHH
Confidence 56678999999999999999999999999888877776664333
No 71
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=30.25 E-value=77 Score=19.07 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHhcCCCccceeeee
Q 047520 29 AISLKEALDQLFSKYGLSISRLRKQG 54 (102)
Q Consensus 29 a~~i~~~i~~~l~~~~L~~~~~~g~~ 54 (102)
.+..++.|...|++.|.++++++-..
T Consensus 45 ~~~~l~ni~~~L~~~G~~~~dvv~~~ 70 (121)
T PF01042_consen 45 TRQALDNIERILAAAGASLDDVVKVT 70 (121)
T ss_dssp HHHHHHHHHHHHHHTTS-GGGEEEEE
T ss_pred HHHHHHhhhhhhhcCCCcceeEeeee
Confidence 34677888899999999998877653
No 72
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=29.96 E-value=50 Score=20.62 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 30 ISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 30 ~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
+.+.+.+.+.|+++|+..=...|..||-
T Consensus 69 ~~i~~~l~~~L~~~Gv~~i~~~g~~FDp 96 (137)
T cd00446 69 EMTLKQLLDVLEKHGVEKIEPEGEPFDP 96 (137)
T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCH
Confidence 4678888999999999866666766664
No 73
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=29.81 E-value=1e+02 Score=16.80 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccceeeeee
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRLRKQGY 55 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~ 55 (102)
+++||+.+.+.|.+.| ||.-..-.|..|
T Consensus 15 ~~~t~~~l~~~v~~~l---~l~e~~~FgL~~ 42 (80)
T PF09379_consen 15 PKTTGQDLLEQVCDKL---GLKEKEYFGLQY 42 (80)
T ss_dssp TTSBHHHHHHHHHHHH---TTSSGGGEEEEE
T ss_pred CCCcHHHHHHHHHHHc---CCCCccEEEEEE
Confidence 4789999988877755 777788899998
No 74
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=29.67 E-value=31 Score=21.95 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHHh----------cCCCccceeeeeecCCccc
Q 047520 27 TTAISLKEALDQLFSK----------YGLSISRLRKQGYDGASNI 61 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~----------~~L~~~~~~g~~~Dgas~m 61 (102)
.-|+.+.+.+.+.|.. +.|....|.|.|..|-..|
T Consensus 82 ~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP~v~ 126 (148)
T TIGR01958 82 RGSEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAPVMM 126 (148)
T ss_pred cCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCCEEE
Confidence 4678899999988862 3455568999985444433
No 75
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=29.65 E-value=85 Score=19.94 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN 66 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~ 66 (102)
...+.|.+.|...+.+.|++..++.-..-||.-.++|...
T Consensus 22 ~~~~~~~~~i~~~i~~~~~~~~~i~V~v~~G~v~l~G~v~ 61 (147)
T PRK11198 22 ADNEDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAA 61 (147)
T ss_pred cchHHHHHHHHHHHHhcCCCcCCceEEEeCCEEEEEEEeC
Confidence 4568999999999999999998877777788888998876
No 76
>COG4086 Predicted secreted protein [Function unknown]
Probab=29.63 E-value=1e+02 Score=22.23 Aligned_cols=21 Identities=10% Similarity=0.463 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHHhcCCCc
Q 047520 27 TTAISLKEALDQLFSKYGLSI 47 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~ 47 (102)
.+-+.|-+.+.+..+++|+++
T Consensus 210 ~~~~dirkvv~dv~~~ynvnl 230 (299)
T COG4086 210 DDPADIRKVVDDVANNYNVNL 230 (299)
T ss_pred CCHHHHHHHHHHHHHHcCCCC
Confidence 466777777788888777775
No 77
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=29.62 E-value=56 Score=22.07 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=29.5
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccceeeeeecCCcc
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~ 60 (102)
+-..+++=...+.+.+++.|++++.+++++ ||++.
T Consensus 138 ~~~~~~~K~~~l~~~~~~~g~~~~~~~a~g-Ds~nD 172 (212)
T COG0560 138 PICDGEGKAKALRELAAELGIPLEETVAYG-DSAND 172 (212)
T ss_pred eecCcchHHHHHHHHHHHcCCCHHHeEEEc-Cchhh
Confidence 446677888899999999999999988887 88876
No 78
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=29.59 E-value=81 Score=18.30 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhcCCCccceeeeeecCC
Q 047520 29 AISLKEALDQLFSKYGLSISRLRKQGYDGA 58 (102)
Q Consensus 29 a~~i~~~i~~~l~~~~L~~~~~~g~~~Dga 58 (102)
++.=++.+.+.|.+.|++.+++..++|-..
T Consensus 53 S~~RA~~V~~~L~~~gi~~~ri~~~g~G~~ 82 (104)
T TIGR02802 53 GERRANAVKDYLQAKGVSASQIETVSYGEE 82 (104)
T ss_pred HHHHHHHHHHHHHHcCCCHHHeEEEeeccc
Confidence 445678889999999999999988887443
No 79
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=29.49 E-value=31 Score=19.46 Aligned_cols=35 Identities=9% Similarity=-0.094 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHH----h------cCCCccceeeeeecCCcccc
Q 047520 27 TTAISLKEALDQLFS----K------YGLSISRLRKQGYDGASNIQ 62 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~----~------~~L~~~~~~g~~~Dgas~m~ 62 (102)
..|+.|.+.+.+.|. + +.|....|.|.|. .|++|.
T Consensus 15 ~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~-~gP~~~ 59 (80)
T cd03081 15 MGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCA-CSPAAM 59 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccC-CCCEEE
Confidence 457889999988885 1 3355578999994 455554
No 80
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons. The enzyme catalysing polymerisation is an RNA-directed DNA-polymerase, or reverse trancriptase (RT) (2.7.7.49 from EC). Reverse transcriptase occurs in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Retroviral reverse transcriptase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The discovery of retroelements in the prokaryotes raises intriguing questions concerning their roles in bacteria and the origin and evolution of reverse transcriptases and whether the bacterial reverse transcriptases are older than eukaryotic reverse transcriptases [].; GO: 0003723 RNA binding, 0003964 RNA-directed DNA polymerase activity, 0006278 RNA-dependent DNA replication; PDB: 1MU2_B 3RWE_C 3DU6_B 3DU5_A 3KYL_A 2WOM_B 1DTQ_A 2OPS_A 3FFI_A 1VRU_B ....
Probab=29.45 E-value=89 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHHHHhcCCCc
Q 047520 27 TTAISLKEALDQLFSKYGLSI 47 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~ 47 (102)
...+.+.+.+.+.++++||.+
T Consensus 173 ~~~~~~~~~i~~~~~~~gl~l 193 (214)
T PF00078_consen 173 EELQKILEKISQWLEELGLKL 193 (214)
T ss_dssp HHHHHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHHHHHHCCCEE
Confidence 447889999999999999765
No 81
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=29.39 E-value=39 Score=21.55 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccceeeee
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRLRKQG 54 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~ 54 (102)
.|+.|..+.+.|.+.|+++|.+..++=...
T Consensus 6 sDh~g~~lK~~i~~~L~~~g~eV~D~G~~~ 35 (140)
T PF02502_consen 6 SDHAGFELKEAIKEYLEEKGYEVIDFGTYS 35 (140)
T ss_dssp E-GGGHHHHHHHHHHHHHTTEEEEEESESS
T ss_pred eCHHHHHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 378999999999999999988766654443
No 82
>PRK14140 heat shock protein GrpE; Provisional
Probab=29.06 E-value=53 Score=22.16 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 30 ISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 30 ~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
+.+.+.+.++|+++|+..=...|..+|-
T Consensus 121 ~mi~k~l~~~L~k~GV~~i~~~Ge~FDP 148 (191)
T PRK14140 121 EMVHRQLLEALKKEGVEVIEAVGEQFDP 148 (191)
T ss_pred HHHHHHHHHHHHHCCCEeeCCCCCCCCh
Confidence 3567888999999999865667777774
No 83
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=29.04 E-value=63 Score=21.45 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=22.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|.+.|++.|.+..++
T Consensus 7 sDhaG~~lK~~l~~~L~~~G~eV~D~ 32 (171)
T TIGR01119 7 CDHIVTDVKMEVSEFLKSKGYEVLDV 32 (171)
T ss_pred eCCchHHHHHHHHHHHHHCCCEEEEe
Confidence 48999999999999999999887654
No 84
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=28.65 E-value=77 Score=18.70 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHhcCCCc----cceeeeeecCCcc
Q 047520 27 TTAISLKEALDQLFSKYGLSI----SRLRKQGYDGASN 60 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~----~~~~g~~~Dgas~ 60 (102)
.-|+.++++|.+.+++.||+. .=|.|.|+-|--+
T Consensus 14 aGA~~V~~al~~ei~~~gl~v~v~~tGC~G~C~~ePlV 51 (92)
T cd03063 14 LGADEVAEAIEAEAAARGLAATIVRNGSRGMYWLEPLV 51 (92)
T ss_pred hCHHHHHHHHHHHHHHcCCeEEEEEecCceecCCCCEE
Confidence 578899999999999999732 3677777655443
No 85
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=28.54 E-value=93 Score=18.81 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=16.2
Q ss_pred HHHHHHHHHHH-hcCCCccceeeeee
Q 047520 31 SLKEALDQLFS-KYGLSISRLRKQGY 55 (102)
Q Consensus 31 ~i~~~i~~~l~-~~~L~~~~~~g~~~ 55 (102)
+....|...|. ++|++.+++..++|
T Consensus 90 ~~~r~lR~~l~~~~g~~~~~~~~~gY 115 (119)
T PF04954_consen 90 SAVRALRRHLREERGLPRDRIYASGY 115 (119)
T ss_dssp HHHHHHHHHHHHH----GGGEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCHHHeEEEEe
Confidence 55678888885 78999888888877
No 86
>PF07841 DM4_12: DM4/DM12 family; InterPro: IPR006631 This domain of unknown function is found in primarily in Drosophila melanogaster (Fruit fly) proteins of unknown function.
Probab=28.40 E-value=57 Score=18.42 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCCCccc
Q 047520 31 SLKEALDQLFSKYGLSISR 49 (102)
Q Consensus 31 ~i~~~i~~~l~~~~L~~~~ 49 (102)
.+++.|.+.++.+|++-..
T Consensus 3 ~lY~~lE~~l~~~G~~g~~ 21 (82)
T PF07841_consen 3 DLYKKLEDMLQRMGFDGRA 21 (82)
T ss_pred HHHHHHHHHHHHcCCCchh
Confidence 5889999999999987433
No 87
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=28.37 E-value=40 Score=18.98 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeee
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQG 54 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~ 54 (102)
..|..+.+.+...+++.||+.+.+.-+-
T Consensus 17 rpg~ti~d~L~~~c~kr~l~~~~~~v~~ 44 (72)
T cd01760 17 RPGMSVRDVLAKACKKRGLNPECCDVFL 44 (72)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 5677889999999999999987665443
No 88
>COG1596 Wza Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]
Probab=27.95 E-value=2e+02 Score=19.87 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=37.4
Q ss_pred EEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCCcc
Q 047520 7 YADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSIS 48 (102)
Q Consensus 7 yv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~~~ 48 (102)
.|+.++.+.=-|+|-++..+.|.+.+.+.|.+.|..+-.+..
T Consensus 73 tV~~~G~i~~P~iG~i~vaG~T~~el~~~I~~~L~~~~~~P~ 114 (239)
T COG1596 73 TVDPDGNISIPLIGRIPVAGKTLEELQSEIADRLAGYLVNPQ 114 (239)
T ss_pred EECCCCcEeeeeeceEEecCCCHHHHHHHHHHHHHhhccCCC
Confidence 488899998899999999999999999999999999766653
No 89
>PRK14144 heat shock protein GrpE; Provisional
Probab=27.28 E-value=57 Score=22.17 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 31 SLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 31 ~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
.+.+.+.++|+++||..=...|..||=
T Consensus 129 mi~k~l~~~L~k~GV~~I~~~G~~FDP 155 (199)
T PRK14144 129 LTMKLFLDALQKFDVEQIDPLGQTFDP 155 (199)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCCh
Confidence 466888999999999866667877763
No 90
>PF06751 EutB: Ethanolamine ammonia lyase large subunit (EutB); InterPro: IPR010628 This family consists of several bacterial ethanolamine ammonia lyase large subunit (EutB) proteins. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia. The enzyme is a heterodimer composed of subunits of Mr approximately 55,000 (EutB) and 35,000 (EutC) [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABQ_C 3ABS_C 3AO0_A 3ABR_A 3ABO_C 3ANY_A 2QEZ_B.
Probab=27.12 E-value=76 Score=24.20 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=22.7
Q ss_pred eeeeEEcCC--CChHHHHHHHHHHHHhcCCCccceee
Q 047520 18 FIGFKHVTC--TTAISLKEALDQLFSKYGLSISRLRK 52 (102)
Q Consensus 18 fl~~~~~~~--~ta~~i~~~i~~~l~~~~L~~~~~~g 52 (102)
.+|.-+..+ .+...+.+.+.++.++|+||.+.|+-
T Consensus 179 VIGiNPa~ds~~~~~~ll~~l~~~~~~~~IPtQ~CVL 215 (444)
T PF06751_consen 179 VIGINPASDSVESVARLLHMLDDVRQRFEIPTQSCVL 215 (444)
T ss_dssp EEEE--SS-SHHHHHHHHHHHHHHHHHCT-SS-EEE-
T ss_pred EeecCCCcCCHHHHHHHHHHHHHHHHHhCCCCcceEe
Confidence 456777765 35567888999999999999877753
No 91
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.71 E-value=60 Score=22.35 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 30 ISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 30 ~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
+.+.+.+.++|+++||..=...|..||=
T Consensus 117 ~mi~k~l~~~L~k~Gv~~I~~~G~~FDP 144 (214)
T PRK14163 117 KSVAESLETTVAKLGLQQFGKEGEPFDP 144 (214)
T ss_pred HHHHHHHHHHHHHCCCEEeCCCCCCCCh
Confidence 4577888899999999876677877763
No 92
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=26.63 E-value=78 Score=17.48 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHHHHhcCCCc
Q 047520 27 TTAISLKEALDQLFSKYGLSI 47 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~ 47 (102)
..+-++...|..+|++.+++|
T Consensus 30 ~kaldiCaeIL~cLE~R~isW 50 (64)
T PF03511_consen 30 LKALDICAEILGCLEKRKISW 50 (64)
T ss_pred HHHHHHHHHHHHHHHhCCCcH
Confidence 567789999999999999997
No 93
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=26.33 E-value=69 Score=18.71 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=19.7
Q ss_pred EEEEEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHH
Q 047520 2 VVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQL 39 (102)
Q Consensus 2 ~i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~ 39 (102)
++.+.|+|+++.+.. =.+.+.+-+++.-.
T Consensus 40 ~ft~kw~DEEGDp~t---------iSS~~EL~EA~rl~ 68 (83)
T cd06404 40 PFTLKWIDEEGDPCT---------ISSQMELEEAFRLY 68 (83)
T ss_pred cEEEEEECCCCCcee---------ecCHHHHHHHHHHH
Confidence 578999999886543 25666676666543
No 94
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=26.32 E-value=95 Score=19.87 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHHHH
Q 047520 33 KEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVA 72 (102)
Q Consensus 33 ~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~~~ 72 (102)
...+...|++.++.-+++.-+++-|++.+.....-+...+
T Consensus 89 ~~pv~tFL~~~~~~gK~v~~F~T~ggs~~~~~~~~l~~~~ 128 (156)
T PF12682_consen 89 PPPVRTFLEQYDFSGKTVIPFCTSGGSGFGNSLEDLKKLC 128 (156)
T ss_dssp -CHHHHHHHCTTTTTSEEEEEEE-SS--CHHHHHHHHHH-
T ss_pred CHHHHHHHHhcCCCCCcEEEEEeeCCCChhHHHHHHHHHC
Confidence 3467788889998888899999988877665555454444
No 95
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=26.28 E-value=75 Score=18.65 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHhcCCCccceeeee
Q 047520 29 AISLKEALDQLFSKYGLSISRLRKQG 54 (102)
Q Consensus 29 a~~i~~~i~~~l~~~~L~~~~~~g~~ 54 (102)
.+..++.|..+|++.|.++++++-..
T Consensus 31 ~~~~~~nl~~~L~~~G~~~~dvvk~~ 56 (105)
T cd06150 31 TRQVLAKIDALLAEAGSDKSRILSAT 56 (105)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEEE
Confidence 34567788888999999998877654
No 96
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=26.22 E-value=70 Score=21.21 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=22.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|++.|++.|.+..++
T Consensus 7 sDhaG~~lK~~l~~~L~~~G~eV~D~ 32 (171)
T PRK12615 7 CDHIVTNEKMAVSDFLKSKGYDVIDC 32 (171)
T ss_pred eCchhHHHHHHHHHHHHHCCCEEEEc
Confidence 48999999999999999999887554
No 97
>PF06308 ErmC: 23S rRNA methylase leader peptide (ErmC); InterPro: IPR009391 This family consists of several very short bacterial 23S rRNA methylase leader peptide (ErmC) sequences. ermC confers resistance to macrolide-lincosamide streptogramin B antibiotics by specifying a ribosomal RNA methylase, which results in decreased ribosomal affinity for these antibiotics. ermC expression is induced by exposure to erythromycin [].; GO: 0046677 response to antibiotic
Probab=26.14 E-value=53 Score=14.57 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=7.7
Q ss_pred CEEEEEEEcCC
Q 047520 1 MVVALRYADKN 11 (102)
Q Consensus 1 l~i~vryv~~~ 11 (102)
|.+-+||||+.
T Consensus 2 lvfq~r~vdkt 12 (27)
T PF06308_consen 2 LVFQMRNVDKT 12 (27)
T ss_pred eeEEEeeccch
Confidence 45668888864
No 98
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=25.77 E-value=99 Score=22.87 Aligned_cols=44 Identities=14% Similarity=0.028 Sum_probs=31.7
Q ss_pred EEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCCccceeeeee
Q 047520 5 LRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGY 55 (102)
Q Consensus 5 vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~ 55 (102)
||+++++-+ -.+++.+..--+++..+-+.|.+.+.|. +++|.+|
T Consensus 209 vrev~p~ik------v~lHla~g~~n~~y~~~fd~ltk~nvdf-DVig~Sy 252 (403)
T COG3867 209 VREVSPTIK------VALHLAEGENNSLYRWIFDELTKRNVDF-DVIGSSY 252 (403)
T ss_pred hhhcCCCce------EEEEecCCCCCchhhHHHHHHHHcCCCc-eEEeeec
Confidence 566665422 3456666666788889999999999884 7788776
No 99
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.76 E-value=19 Score=28.37 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=40.9
Q ss_pred EEEEEEcCCCeEEEEeeee-----EEcCCCChHHHHHHHHHHHHhcCCCcc-ceeeeeecCCcc
Q 047520 3 VALRYADKNGYVFERFIGF-----KHVTCTTAISLKEALDQLFSKYGLSIS-RLRKQGYDGASN 60 (102)
Q Consensus 3 i~vryv~~~~~i~e~fl~~-----~~~~~~ta~~i~~~i~~~l~~~~L~~~-~~~g~~~Dgas~ 60 (102)
++||| ++.-+|++||. +.++-.||+.|...=...+++||.+|+ +++.+-+|.--+
T Consensus 557 fivRF---kGsrKeEllGVA~NRLirmDlatGd~iKTWRfsnMKqWNVNWeir~v~IeF~dev~ 617 (664)
T KOG3727|consen 557 FIVRF---KGSRKEELLGVAYNRLIRMDLATGDHIKTWRFSNMKQWNVNWEIRQVMIEFEDEVN 617 (664)
T ss_pred EEEEe---cCcchHHHHhhhhhheeeeecccCCceeeeeecchhhhcccceeeEEEEEecccce
Confidence 45666 23347888875 445668999999988999999999995 788887776543
No 100
>PHA01811 hypothetical protein
Probab=25.62 E-value=12 Score=20.73 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=15.7
Q ss_pred EEEEEEcCCCeEEEEeeeeEEc
Q 047520 3 VALRYADKNGYVFERFIGFKHV 24 (102)
Q Consensus 3 i~vryv~~~~~i~e~fl~~~~~ 24 (102)
.++||.|++.+--|+|+-+.+-
T Consensus 14 yi~hyldd~neyieefip~hey 35 (78)
T PHA01811 14 YILHYLDDDNEYIEEFIPLHEY 35 (78)
T ss_pred EEEEEEcCchHHHHhhcchhhh
Confidence 4679999887777877665544
No 101
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=25.51 E-value=77 Score=20.43 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|++.|+++|.+..++
T Consensus 7 sDhaG~~lK~~l~~~L~~~g~eV~D~ 32 (148)
T TIGR02133 7 HDHAGFEYKEALWLDLAAHEPEVCDV 32 (148)
T ss_pred eCchhHHHHHHHHHHHHHCCCEEEEC
Confidence 48999999999999999999876554
No 102
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=25.39 E-value=1.7e+02 Score=21.67 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=42.5
Q ss_pred eeEEcC--CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHHHHh
Q 047520 20 GFKHVT--CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAK 73 (102)
Q Consensus 20 ~~~~~~--~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~~~~ 73 (102)
|.++-. ..-.+.|...+.+.|++.|++++++-++++-.++-|.+...+-...+|
T Consensus 39 GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~~~Ak 94 (345)
T PTZ00340 39 GFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGAVVAR 94 (345)
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHHHHHH
Confidence 444442 467899999999999999999999999999999988777774444443
No 103
>PRK09604 UGMP family protein; Validated
Probab=25.21 E-value=1.6e+02 Score=21.32 Aligned_cols=41 Identities=7% Similarity=0.213 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN 66 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~ 66 (102)
...++.|...+.++|++.|++++++-++++...+-+.....
T Consensus 49 ~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglr 89 (332)
T PRK09604 49 RAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALL 89 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHH
Confidence 35688999999999999999999998988887774433333
No 104
>TIGR02522 pilus_cpaD pilus (Caulobacter type) biogenesis lipoprotein CpaD. This family consists of a pilus biogenesis protein, CpaD, from Caulobacter, and homologs in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function is not known.
Probab=24.98 E-value=1.3e+02 Score=20.33 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
...++.+...|...|..+|++..+ +...|..
T Consensus 84 sgaa~~~~~~ir~~L~~~Gv~~~~-~~~~~~~ 114 (198)
T TIGR02522 84 SAAAEAMAGEIRRVLAASGVGARN-VKVMYRA 114 (198)
T ss_pred hhHHHHHHHHHHHHHHHcCCChhc-ceeeccc
Confidence 335899999999999999999988 5665543
No 105
>PRK14150 heat shock protein GrpE; Provisional
Probab=24.97 E-value=69 Score=21.55 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCCccceeeeeec
Q 047520 31 SLKEALDQLFSKYGLSISRLRKQGYD 56 (102)
Q Consensus 31 ~i~~~i~~~l~~~~L~~~~~~g~~~D 56 (102)
-+.+.+.++|+++|+..=...|.-||
T Consensus 124 mi~~~l~~~L~~~Gv~~i~~~G~~FD 149 (193)
T PRK14150 124 LTLKSLLDTVAKFGVEVVGPVGEPFN 149 (193)
T ss_pred HHHHHHHHHHHHCCCeeeCCCCCCCC
Confidence 35577888999999986566787776
No 106
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=24.90 E-value=40 Score=21.81 Aligned_cols=35 Identities=6% Similarity=-0.158 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHH----------hcCCCccceeeeeecCCcccc
Q 047520 27 TTAISLKEALDQLFS----------KYGLSISRLRKQGYDGASNIQ 62 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~----------~~~L~~~~~~g~~~Dgas~m~ 62 (102)
..|+.|.+.+.+.|. ++.|....|.|.| |.|++|.
T Consensus 89 ~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C-~~aP~~~ 133 (156)
T PRK05988 89 MGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLC-ACSPAAM 133 (156)
T ss_pred CCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCcc-CCCCeEE
Confidence 567888888888874 1335567899999 6677764
No 107
>PRK10325 heat shock protein GrpE; Provisional
Probab=24.89 E-value=70 Score=21.58 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 31 SLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 31 ~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
.+.+.+.++|.++|+..=...|..||=
T Consensus 125 m~~~~l~~~L~~~Gv~~i~~~G~~FDP 151 (197)
T PRK10325 125 LTLKSMLDVVRKFGVEVIAETNVPLDP 151 (197)
T ss_pred HHHHHHHHHHHHCcCeeeCCCCCCCCh
Confidence 356777889999999865667877763
No 108
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=24.63 E-value=1.3e+02 Score=16.30 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeeeec
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQGYD 56 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~~D 56 (102)
.+..++...|.+.|.+.|+++.++......
T Consensus 7 ~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 7 NDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 345678889999999999999988877765
No 109
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=24.62 E-value=1.2e+02 Score=16.72 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccc
Q 047520 28 TAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGE 64 (102)
Q Consensus 28 ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~ 64 (102)
|.+.+..-+.-+.++++|+...+-...+ +|.|+
T Consensus 6 t~~~V~~Wl~w~~~e~~l~~~~i~~~~F----~m~Gk 38 (68)
T cd08757 6 TKNDVLEWLQFVAEQNKLDAECISFQKF----NIDGQ 38 (68)
T ss_pred CHHHHHHHHHHHHHHcCCCCCcCCcccc----CCCHH
Confidence 5678888899999999998754433333 56666
No 110
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=24.51 E-value=83 Score=20.89 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCccce
Q 047520 25 TCTTAISLKEALDQLFSKYGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~~~L~~~~~ 50 (102)
.|+.|..+.+.|.+.|+++|.+..++
T Consensus 7 sDhaG~~lK~~l~~~L~~~G~eV~D~ 32 (171)
T PRK08622 7 CDHIVTDEKMAVSDYLKSKGHEVIDV 32 (171)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEEc
Confidence 48999999999999999999876554
No 111
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=24.48 E-value=1.6e+02 Score=21.10 Aligned_cols=40 Identities=8% Similarity=0.178 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN 66 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~ 66 (102)
.-++.|-..+.++|++.|++++++-++++-..+-+.+...
T Consensus 44 ~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 44 HHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 5667799999999999999999999998888776666555
No 112
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.46 E-value=97 Score=22.27 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=29.3
Q ss_pred EEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcC
Q 047520 6 RYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYG 44 (102)
Q Consensus 6 ryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~ 44 (102)
-|....| -+.||.|.+.+..|.++|+.+|.+..++.-
T Consensus 143 IYmtGHG--gd~FlKFqd~eelts~dLadai~qm~e~~R 179 (309)
T KOG1349|consen 143 IYLTGHG--GDGFLKFQDAEELTSDDLADAIQQMWEKKR 179 (309)
T ss_pred EEEccCC--CccceecccHHHhhhHHHHHHHHHHHHhhh
Confidence 3554444 378999999999999999999999977643
No 113
>PRK14142 heat shock protein GrpE; Provisional
Probab=24.34 E-value=70 Score=22.19 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHhcCCCccceeeeeec
Q 047520 29 AISLKEALDQLFSKYGLSISRLRKQGYD 56 (102)
Q Consensus 29 a~~i~~~i~~~l~~~~L~~~~~~g~~~D 56 (102)
-+.|.+.+.++|+++||..=...|.-||
T Consensus 110 v~~I~kqL~~iLek~GVe~I~~~Ge~FD 137 (223)
T PRK14142 110 LKSVADKLDSALTGLGLVAFGAEGEDFD 137 (223)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCCCCCCC
Confidence 3568999999999999986566777766
No 114
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=24.24 E-value=1.1e+02 Score=20.11 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCCccceeeeeec
Q 047520 30 ISLKEALDQLFSKYGLSISRLRKQGYD 56 (102)
Q Consensus 30 ~~i~~~i~~~l~~~~L~~~~~~g~~~D 56 (102)
+.-++.+.+.|.+.|++.+++..++|-
T Consensus 123 ~~RA~aV~~~L~~~Gv~~~ri~~~g~G 149 (173)
T PRK10802 123 ERRANAVKMYLQGKGVSADQISIVSYG 149 (173)
T ss_pred HHHHHHHHHHHHHcCCCHHHeEEEEec
Confidence 456788999999999999998888873
No 115
>COG3050 HolD DNA polymerase III, psi subunit [DNA replication, recombination, and repair]
Probab=24.19 E-value=44 Score=21.08 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCccceeeeeecCCccc
Q 047520 34 EALDQLFSKYGLSISRLRKQGYDGASNI 61 (102)
Q Consensus 34 ~~i~~~l~~~~L~~~~~~g~~~Dgas~m 61 (102)
-.+.++|..++|+.++|....+|--+-|
T Consensus 51 pLl~diLrSl~l~~~~vl~L~peqi~~L 78 (133)
T COG3050 51 PLLSDVLRSLTLSPSQVLCLTPEQIAML 78 (133)
T ss_pred hHHHHHHHHcCCCHHHeeecCHHHHhhc
Confidence 3678999999999999999998876544
No 116
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=24.00 E-value=1.4e+02 Score=20.83 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=36.0
Q ss_pred eEEEEeeeeEEcC--CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhH
Q 047520 13 YVFERFIGFKHVT--CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNA 67 (102)
Q Consensus 13 ~i~e~fl~~~~~~--~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~ 67 (102)
+++.++=|.++-. ..-.+.|...|.+.|++.+++++++-++++-.++ |.+.+
T Consensus 12 ~~~~~~gGv~P~~a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GP---Gsftg 65 (268)
T PF00814_consen 12 EIHAQYGGVVPEIASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGP---GSFTG 65 (268)
T ss_dssp E---TTSSSSHCCHHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEES---S-HHH
T ss_pred cccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC---Ccccc
Confidence 3445554555543 4668899999999999999999999998887777 55553
No 117
>PRK14139 heat shock protein GrpE; Provisional
Probab=23.97 E-value=80 Score=21.17 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 31 SLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 31 ~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
-+.+.+.++|+++||..=...|..||=
T Consensus 115 mi~k~l~~vL~k~Gv~~I~~~G~~FDP 141 (185)
T PRK14139 115 LTLKQLTSAFEKGRVVEINPVGEKFDP 141 (185)
T ss_pred HHHHHHHHHHHHCCCceeCCCCCCCCh
Confidence 455678899999999865667777763
No 118
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=23.86 E-value=1.1e+02 Score=20.29 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=33.5
Q ss_pred EcCCCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh
Q 047520 23 HVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN 66 (102)
Q Consensus 23 ~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~ 66 (102)
+.....++.|...|.+.|++.|++++++-+++..-++ |.+.
T Consensus 28 ~~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~GP---GSfT 68 (202)
T TIGR03725 28 EAGRNHSEILLPMIEELLAEAGLSLQDLDAIAVGVGP---GSFT 68 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC---ChHH
Confidence 3446789999999999999999999998888776665 5555
No 119
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.82 E-value=92 Score=18.81 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCCccc
Q 047520 32 LKEALDQLFSKYGLSISR 49 (102)
Q Consensus 32 i~~~i~~~l~~~~L~~~~ 49 (102)
-.+.|.++|+++||+-++
T Consensus 28 a~~vV~eALeKygL~~e~ 45 (100)
T cd01781 28 ADRIVGEALEKYGLEKSD 45 (100)
T ss_pred HHHHHHHHHHHhCCCccC
Confidence 345678999999998653
No 120
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=23.77 E-value=1.3e+02 Score=18.68 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=25.6
Q ss_pred CEEEEEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHH---HHHhcCCCc
Q 047520 1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQ---LFSKYGLSI 47 (102)
Q Consensus 1 l~i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~---~l~~~~L~~ 47 (102)
|.|--+|.+.+++..+|+ ..|+++|-+++.+ .|+..|+.+
T Consensus 1 L~I~w~~l~~~g~tC~RC-------~~Tg~~L~~av~~l~~~L~~~Giev 43 (120)
T PF10865_consen 1 LVIEWQHLDLDGKTCERC-------GDTGETLREAVKELAPVLAPLGIEV 43 (120)
T ss_pred CeEEEEEeecCCCcCCch-------hhHHHHHHHHHHHHHHHHHhCCcEE
Confidence 345556666555555554 5677777766654 588888874
No 121
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.75 E-value=1.7e+02 Score=20.40 Aligned_cols=34 Identities=21% Similarity=0.074 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCCccccc
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQG 63 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g 63 (102)
..+++.|. .|..-|.+.|++ +++..+|.+++-.+
T Consensus 192 ~m~~~~l~-~iI~~l~~~g~~---VvAivsD~g~~N~~ 225 (236)
T PF12017_consen 192 SMDADILK-NIIEKLHEIGYN---VVAIVSDMGSNNIS 225 (236)
T ss_pred cCCHHHHH-HHHHHHHHCCCE---EEEEECCCCcchHH
Confidence 56666665 455678888875 58888888876433
No 122
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.67 E-value=1.2e+02 Score=15.74 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeeeec
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQGYD 56 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~~D 56 (102)
.+-.++...|...+.+.|+++.+......+
T Consensus 8 ~d~~gll~~i~~~l~~~~~~I~~~~~~~~~ 37 (70)
T cd04899 8 LDRPGLLADVTRVLAELGLNIHSAKIATLG 37 (70)
T ss_pred cCCccHHHHHHHHHHHCCCeEEEEEEEecC
Confidence 344568889999999999999877766543
No 123
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.58 E-value=1.3e+02 Score=16.25 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHHhcCCCccceeeeee
Q 047520 28 TAISLKEALDQLFSKYGLSISRLRKQGY 55 (102)
Q Consensus 28 ta~~i~~~i~~~l~~~~L~~~~~~g~~~ 55 (102)
+-.+|+..+..+|..+|+++....-.++
T Consensus 10 Dr~gLl~~i~~~l~~~~l~I~~A~i~T~ 37 (73)
T cd04900 10 DRPGLFARIAGALDQLGLNILDARIFTT 37 (73)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEeEEEEe
Confidence 4567899999999999999877666666
No 124
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=23.44 E-value=84 Score=16.33 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=8.3
Q ss_pred EEEEEcCCCeEE
Q 047520 4 ALRYADKNGYVF 15 (102)
Q Consensus 4 ~vryv~~~~~i~ 15 (102)
+-||+|++|.++
T Consensus 15 vYk~~D~~G~v~ 26 (60)
T PF13511_consen 15 VYKWVDENGVVH 26 (60)
T ss_pred EEEEECCCCCEE
Confidence 458888887543
No 125
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.36 E-value=2.8e+02 Score=19.71 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=23.8
Q ss_pred EEEEEEEcCC---CeEEEEeeeeEEc-CCCChHHHHHHHHHH
Q 047520 2 VVALRYADKN---GYVFERFIGFKHV-TCTTAISLKEALDQL 39 (102)
Q Consensus 2 ~i~vryv~~~---~~i~e~fl~~~~~-~~~ta~~i~~~i~~~ 39 (102)
.+++|||+++ |.|-.. .-+++ ++-|.+++.+.+.+.
T Consensus 214 G~TvH~V~e~lD~GpII~Q--~~v~I~~~dt~~~L~~ri~~~ 253 (280)
T TIGR00655 214 GATAHYVTEELDEGPIIEQ--DVVRVDHTDNVEDLIRAGRDI 253 (280)
T ss_pred EEEEEEEcCCCcCCCeEEE--EEEEcCCCCCHHHHHHHHHHH
Confidence 3689999874 444322 34555 478899988877653
No 126
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=23.22 E-value=1.3e+02 Score=20.25 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=22.4
Q ss_pred CChHHHHHHHHH----HHHhcCCCccceeeeeecCCcc
Q 047520 27 TTAISLKEALDQ----LFSKYGLSISRLRKQGYDGASN 60 (102)
Q Consensus 27 ~ta~~i~~~i~~----~l~~~~L~~~~~~g~~~Dgas~ 60 (102)
.+.+.+.+.+.+ ++++.+.+..++.|++.+|-..
T Consensus 43 ~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~ 80 (245)
T PF00370_consen 43 QDPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGH 80 (245)
T ss_dssp E-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SS
T ss_pred cChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccC
Confidence 356666555554 4566778889999999887554
No 127
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=23.16 E-value=1e+02 Score=18.11 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCc
Q 047520 26 CTTAISLKEALDQLFSKYGLSI 47 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~ 47 (102)
+.+...+++.|.+.++.+|.+-
T Consensus 3 ~~~R~~lY~~lE~~l~~~G~~g 24 (95)
T smart00718 3 DRSRRLLYEALENLLDQLGFNG 24 (95)
T ss_pred cchHHHHHHHHHHHHHHcCCCc
Confidence 4567789999999999999874
No 128
>PRK06934 flavodoxin; Provisional
Probab=23.07 E-value=1.6e+02 Score=20.31 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHHHH
Q 047520 32 LKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVA 72 (102)
Q Consensus 32 i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~~~ 72 (102)
+...+...|+++++.-++++-+++-|++.+....+.+...+
T Consensus 144 ~P~~V~tFLe~~d~~GK~I~pF~T~ggsg~g~s~~~i~~l~ 184 (221)
T PRK06934 144 MPMVMYSFFEQHDFSGKTLIPFTTHGGSRFSDSLREIKRLQ 184 (221)
T ss_pred ccHHHHHHHHhcCCCCCEEEEEEecCCCCccchHHHHHHHc
Confidence 34567788899999989999999999888777766665554
No 129
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=22.99 E-value=67 Score=19.74 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=24.1
Q ss_pred EEeeeeEEcC--CCChHHHHHHHHHHHHhcCCC
Q 047520 16 ERFIGFKHVT--CTTAISLKEALDQLFSKYGLS 46 (102)
Q Consensus 16 e~fl~~~~~~--~~ta~~i~~~i~~~l~~~~L~ 46 (102)
...|..+--+ .+.|.-++++|.+-+.+.||.
T Consensus 6 ~~lLrIy~~E~d~~eGkp~~~~iverlre~Gi~ 38 (109)
T COG1993 6 SKLLRIYLGENDKHEGKPLYEAIVERLREEGIR 38 (109)
T ss_pred ceeeEEEEccccccCCeEHHHHHHHHHHHcCcC
Confidence 4445555554 478999999999999999987
No 130
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.87 E-value=90 Score=21.33 Aligned_cols=36 Identities=19% Similarity=-0.003 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN 66 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~ 66 (102)
+-+.+.-.+.|.+.+-....| -+..|+|++++|..+
T Consensus 93 d~~~~~~~~~l~~~l~~~~~D-----vV~sD~ap~~~g~~~ 128 (205)
T COG0293 93 DITDEDTLEKLLEALGGAPVD-----VVLSDMAPNTSGNRS 128 (205)
T ss_pred eccCccHHHHHHHHcCCCCcc-----eEEecCCCCcCCCcc
Confidence 566666666777776665444 367899999999987
No 131
>PRK14151 heat shock protein GrpE; Provisional
Probab=22.57 E-value=82 Score=20.89 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCCccceeeeeec
Q 047520 31 SLKEALDQLFSKYGLSISRLRKQGYD 56 (102)
Q Consensus 31 ~i~~~i~~~l~~~~L~~~~~~g~~~D 56 (102)
-+.+.+.++|+++|+..=...|..||
T Consensus 106 mi~k~l~~~L~k~Gv~~i~~~G~~FD 131 (176)
T PRK14151 106 LTLKMFQDTLKRYQLEAVDPHGEPFN 131 (176)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCC
Confidence 35667788999999986555676666
No 132
>PRK14146 heat shock protein GrpE; Provisional
Probab=22.34 E-value=84 Score=21.57 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 30 ISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 30 ~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
+-+.+.+.++|+++||..=...|..+|=
T Consensus 138 ~mi~k~l~~~L~k~Gv~~i~~~G~~FDP 165 (215)
T PRK14146 138 KMILKEFYSVLEKSNVIRFDPKGEPFDP 165 (215)
T ss_pred HHHHHHHHHHHHHCcCeeeCCCCCCCCh
Confidence 4566788899999999865667877763
No 133
>PF14926 DUF4498: Domain of unknown function (DUF4498)
Probab=22.26 E-value=1.1e+02 Score=21.67 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCccceee--eeecCC
Q 047520 34 EALDQLFSKYGLSISRLRK--QGYDGA 58 (102)
Q Consensus 34 ~~i~~~l~~~~L~~~~~~g--~~~Dga 58 (102)
..+.+.|++||+. .++.. ++||.-
T Consensus 16 ke~~~~L~KW~L~-gri~~q~F~Fdk~ 41 (247)
T PF14926_consen 16 KEIRELLMKWGLQ-GRIKAQAFRFDKP 41 (247)
T ss_pred HHHHHHHHHCCCC-CcEEEEEEEeCCC
Confidence 4678899999998 44444 466653
No 134
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=21.98 E-value=1.7e+02 Score=16.63 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=21.5
Q ss_pred eEEcCC--C--ChHHHHHHHHHHHHhcCCCc
Q 047520 21 FKHVTC--T--TAISLKEALDQLFSKYGLSI 47 (102)
Q Consensus 21 ~~~~~~--~--ta~~i~~~i~~~l~~~~L~~ 47 (102)
++++++ + |.+.+..+|...-.+.|++.
T Consensus 5 ~IeLdd~~~yPs~e~i~~aIE~YC~~~~~~l 35 (74)
T PF14201_consen 5 FIELDDSPKYPSKEEICEAIEKYCIKNGESL 35 (74)
T ss_pred EEEcccCCCCCCHHHHHHHHHHHHHHcCCce
Confidence 455543 4 89999999999999988875
No 135
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=21.77 E-value=1.3e+02 Score=15.49 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 28 TAISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 28 ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
+..++...+...|.+.|+++........++
T Consensus 9 d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~ 38 (70)
T cd04873 9 DRPGLLADITRVLADLGLNIHDARISTTGE 38 (70)
T ss_pred CCCCHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 445688899999999999987777666543
No 136
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.77 E-value=2.6e+02 Score=19.08 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=32.2
Q ss_pred EcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHh
Q 047520 8 ADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSK 42 (102)
Q Consensus 8 v~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~ 42 (102)
|+.++.|.=-++|=+.+.+.|.+.+.+.|.+.|++
T Consensus 26 V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~ 60 (239)
T TIGR03028 26 VSESGSITFPLIGEVKLGGETPAAAERKIASRLSK 60 (239)
T ss_pred ECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh
Confidence 67789999999999999999999999999999986
No 137
>PRK14153 heat shock protein GrpE; Provisional
Probab=21.74 E-value=88 Score=21.17 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 30 ISLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 30 ~~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
+.+.+.+..+|+++||..=...|..||-
T Consensus 117 emi~k~~~~vL~k~Gv~~I~~~G~~FDP 144 (194)
T PRK14153 117 EMVSKQFFSILEKYGLERIECEGEEFDP 144 (194)
T ss_pred HHHHHHHHHHHHHCCCeeeCCCCCCCCh
Confidence 4677888899999999866667888874
No 138
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=21.65 E-value=1.4e+02 Score=17.41 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHHHHhcCCCcc
Q 047520 27 TTAISLKEALDQLFSKYGLSIS 48 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~ 48 (102)
-|.+++-+.+...|+..|+..+
T Consensus 60 WTsq~Lid~~q~fLqhlgis~d 81 (89)
T PF07380_consen 60 WTSQDLIDATQNFLQHLGISED 81 (89)
T ss_pred cchHHHHHHHHHHHHHcCCCcc
Confidence 4899999999999999999843
No 139
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=21.44 E-value=2.1e+02 Score=21.92 Aligned_cols=46 Identities=9% Similarity=0.204 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHHHH
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVA 72 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~~~ 72 (102)
.-.+.|...+.++|++-|++++++-++++-.++-+.+...+.....
T Consensus 47 ~H~~~l~~~i~~~l~~~~~~~~~id~iav~~gPg~~~~l~vg~~~a 92 (535)
T PRK09605 47 HHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGPGLGPCLRVVATAA 92 (535)
T ss_pred HHHHHHHHHHHHHHHHcCCCHhhCCEEEECCCCCcHhhHHHHHHHH
Confidence 4677899999999999999999999999988887777666443333
No 140
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=21.41 E-value=1.6e+02 Score=17.59 Aligned_cols=25 Identities=4% Similarity=0.161 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHHhcCCCcccee
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLR 51 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~ 51 (102)
.=|+.|-..+.+.|.++|++-.++.
T Consensus 40 QfG~~Ir~~v~etL~~lgV~~~~v~ 64 (92)
T TIGR01608 40 QFGDDIESTVKETLKLLGVENAVVK 64 (92)
T ss_pred HHhHHHHHHHHHHHHHcCCceEEEE
Confidence 5688999999999999998744443
No 141
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=21.23 E-value=1e+02 Score=19.92 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHHHHh--cCCCccce
Q 047520 25 TCTTAISLKEALDQLFSK--YGLSISRL 50 (102)
Q Consensus 25 ~~~ta~~i~~~i~~~l~~--~~L~~~~~ 50 (102)
.|+.|..+.+.|++.|++ .|.+..++
T Consensus 9 sDhaG~~lK~~l~~~L~~~~~g~eV~D~ 36 (151)
T PTZ00215 9 SDHAGFDLKNEIIDYIKNKGKEYKIEDM 36 (151)
T ss_pred eCCchHHHHHHHHHHHHhccCCCEEEEc
Confidence 489999999999999999 77765553
No 142
>PRK15067 ethanolamine ammonia lyase large subunit; Provisional
Probab=21.22 E-value=95 Score=23.85 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=26.2
Q ss_pred eeeeEEcCC--CChHHHHHHHHHHHHhcCCCccceee
Q 047520 18 FIGFKHVTC--TTAISLKEALDQLFSKYGLSISRLRK 52 (102)
Q Consensus 18 fl~~~~~~~--~ta~~i~~~i~~~l~~~~L~~~~~~g 52 (102)
.+|.-+..+ .+...+.+.+.++.++|+||.+.|+-
T Consensus 189 VIGiNPa~Ds~~~~~~ll~~l~~v~~~~~IPtQ~CVL 225 (461)
T PRK15067 189 VIGINPATDSVENVSRLLHMLDEVIQRFEIPTQSCVL 225 (461)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEe
Confidence 456666654 35567788889999999999888864
No 143
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=21.01 E-value=2.1e+02 Score=21.24 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=35.6
Q ss_pred EEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCC
Q 047520 7 YADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLS 46 (102)
Q Consensus 7 yv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~ 46 (102)
.|+.+|.|.=-++|-+.+.+.|.+.+.+.|...|+++=.+
T Consensus 119 ~V~~dG~I~~P~vG~V~vaG~T~~e~~~~I~~~L~~~~~~ 158 (379)
T PRK15078 119 WVHADGTIFYPYIGKVHVAGKTVTEIRSDITGRLAKYIES 158 (379)
T ss_pred EECCCCeEeeccCceEEECCCCHHHHHHHHHHHHHHhccC
Confidence 4889999999999999999999999999999999875444
No 144
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=20.94 E-value=2.4e+02 Score=20.88 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=34.4
Q ss_pred EcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCC
Q 047520 8 ADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLS 46 (102)
Q Consensus 8 v~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~ 46 (102)
|+.++.|.=-++|-+++.+.|.+.+.+.|.+.|++.=.+
T Consensus 107 V~~dG~I~~P~vG~V~vaG~T~~q~~~~I~~~L~~~~~~ 145 (355)
T PRK15175 107 VTDSNTVQVPYAGTIPVSGLDVTQLADEIKKRLSRVVLN 145 (355)
T ss_pred ECCCCeEEecccceEEECCCCHHHHHHHHHHHHHhhcCC
Confidence 688899999999999999999999999999999875433
No 145
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.92 E-value=1.1e+02 Score=18.66 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHhcCCCccceeee
Q 047520 29 AISLKEALDQLFSKYGLSISRLRKQ 53 (102)
Q Consensus 29 a~~i~~~i~~~l~~~~L~~~~~~g~ 53 (102)
++..++.|...|++.|.++++++-.
T Consensus 43 ~~~~l~ni~~~L~~aG~~~~dVvk~ 67 (126)
T cd06151 43 TISVLKRIETILQSQGLTMGDVVKM 67 (126)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 4567778888899999998887665
No 146
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.82 E-value=1e+02 Score=21.11 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCCCccce-eeeeecC
Q 047520 30 ISLKEALDQLFSKYGLSISRL-RKQGYDG 57 (102)
Q Consensus 30 ~~i~~~i~~~l~~~~L~~~~~-~g~~~Dg 57 (102)
+-+.+.+..+|+++||..=.. +|..+|-
T Consensus 100 emi~k~~~~~L~k~GV~~I~~~~G~~FDP 128 (208)
T PRK14155 100 EMTEKELLGAFERNGLKKIDPAKGDKFDP 128 (208)
T ss_pred HHHHHHHHHHHHHCCCceecCCCCCCCCh
Confidence 345677889999999985444 6877764
No 147
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=20.78 E-value=1.5e+02 Score=17.77 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCccceee
Q 047520 26 CTTAISLKEALDQLFSKYGLSISRLRK 52 (102)
Q Consensus 26 ~~ta~~i~~~i~~~l~~~~L~~~~~~g 52 (102)
+.+++...+.+.+..+++|++.++.--
T Consensus 38 ~~~~dda~elm~~f~~~F~Vd~~~f~~ 64 (111)
T PF07377_consen 38 GLDGDDAEELMEDFFERFNVDLSDFDF 64 (111)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence 468999999999999999999866544
No 148
>KOG4108 consensus Dynein light chain [Cell motility]
Probab=20.48 E-value=2.2e+02 Score=19.02 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHH
Q 047520 27 TTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVA 70 (102)
Q Consensus 27 ~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~ 70 (102)
+=++.|++.|++-+++.|.+-=+.+.+..=|--.+.|.+.+...
T Consensus 100 ~lt~elae~I~~rvK~l~~~RYK~Vv~V~ige~~gqGv~~~sr~ 143 (174)
T KOG4108|consen 100 QLTKELAEEIKDRVKELGYPRYKYVVQVMIGEQLGQGVYIASRC 143 (174)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEEEEhhhhcchHHHHHHh
Confidence 34678889999999999988878888877666666666554443
No 149
>PF06089 Asparaginase_II: L-asparaginase II; InterPro: IPR010349 This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (3.5.1.1 from EC) catalyses the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source [].
Probab=20.26 E-value=3.6e+02 Score=19.82 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.7
Q ss_pred CCCChHHHH-HHHHHHHHhcCCCccceeeee--------------ec-----CCcccccchhHHHHHHhh
Q 047520 25 TCTTAISLK-EALDQLFSKYGLSISRLRKQG--------------YD-----GASNIQGEFNAIVAVAKK 74 (102)
Q Consensus 25 ~~~ta~~i~-~~i~~~l~~~~L~~~~~~g~~--------------~D-----gas~m~g~~~~v~~~~~~ 74 (102)
.+|+||... +.+...|++.||+.+++.+=. .+ -..|.+||+.++...|+.
T Consensus 73 ASH~Ge~~H~~~v~~~L~k~gL~e~~L~Cg~~~P~~~~~~~~li~~g~~p~~l~~NCSGKHagmLa~c~~ 142 (324)
T PF06089_consen 73 ASHSGEPEHVEAVRSMLAKAGLSEEDLQCGPHWPLDEEAREALIRAGGKPSRLHNNCSGKHAGMLALCVH 142 (324)
T ss_pred hcccChHHHHHHHHHHHHHcCCCHHHcCCCCCCCCCHHHHHHHHhCCCCCCcccccChhHHHHHHHHHHH
Confidence 367777654 466888999999988876633 11 224688999988887764
No 150
>PRK14162 heat shock protein GrpE; Provisional
Probab=20.13 E-value=97 Score=20.94 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCCccceeeeeecC
Q 047520 31 SLKEALDQLFSKYGLSISRLRKQGYDG 57 (102)
Q Consensus 31 ~i~~~i~~~l~~~~L~~~~~~g~~~Dg 57 (102)
.+.+.+.++|+++||..=...|.-+|=
T Consensus 124 mi~k~l~~vL~~~GV~~I~~~G~~FDP 150 (194)
T PRK14162 124 MTLDHLVKALKDHGVTEIKADGEKFDP 150 (194)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCCh
Confidence 477888899999999865556777763
No 151
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=20.02 E-value=2.2e+02 Score=17.13 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=37.4
Q ss_pred EEEEEEcCCCeEEEEeeeeEEc---CCCChHHHHHHHHHHHHhcCCCccceeeeeecCCc
Q 047520 3 VALRYADKNGYVFERFIGFKHV---TCTTAISLKEALDQLFSKYGLSISRLRKQGYDGAS 59 (102)
Q Consensus 3 i~vryv~~~~~i~e~fl~~~~~---~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas 59 (102)
+++=|-|+ ...+.+.+..-.+ ..+++..+...|..+++++ +-..++-.++|+..
T Consensus 31 ~~lE~ad~-~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~--p~~YVRliG~D~~~ 87 (99)
T cd03527 31 PCLEFTEP-EHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAY--PDHYVRVVGFDNYK 87 (99)
T ss_pred EEEEcccC-CCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHC--CCCeEEEEEEeCCc
Confidence 34445443 2344555554333 4578999999999999998 45789999999864
Done!