BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047524
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 162/351 (46%), Gaps = 124/351 (35%)
Query: 1 YAGDSQFGRKNFFSRVGLYKGNPF-KYEVTKFLYATSSSPLPAAFIFKSLSSECWHKESN 59
+AG S + RK+FF++VGL +P+ KY+VTKF+YATS +P +F+ +S E W KESN
Sbjct: 69 FAGASIYSRKDFFAKVGLEIAHPYTKYKVTKFIYATSDIHVPESFLLFPISREGWSKESN 128
Query: 60 WIGYIAVACDEGKAALGRRDILTAWL-------------------------RN------- 87
W GY+AV D+G A LGRRDI+ +W RN
Sbjct: 129 WXGYVAVTDDQGTALLGRRDIVVSWRGSVQPLEWVEDFEFGLVNAIKIFGERNDQVQIHQ 188
Query: 88 ---------------------EQVLDEVERLLGVYDAEDEEASKTITSHTIGPVIA---- 122
+QVL EV RLL Y +DEE S TI H++G +A
Sbjct: 189 GWYSIYXSQDERSPFTKTNARDQVLREVGRLLEKY--KDEEVSITICGHSLGAALATLSA 246
Query: 123 --------------------VTVFSFGSPYVGDIEFKKLCDSMEHLHMLRVRNLQDQIPS 162
VT F F SP VGD +F+KL +E + +LR RNL D IP
Sbjct: 247 TDIVANGYNRPKSRPDKSCPVTAFVFASPRVGDSDFRKLFSGLEDIRVLRTRNLPDVIPI 306
Query: 163 YPLLG-------------------SKGG-------------------------FKLEVKQ 178
YP +G S G F+L+V++
Sbjct: 307 YPPIGYSEVGDEFPIDTRKSPYXKSPGNLATFHCLEGYLHGVAGTQGTNKADLFRLDVER 366
Query: 179 DIALVNKRMDVLKEDYLVPGKWLCLENTGMVQGEDGNWKLEDHEIEDGDGI 229
I LVNK +D LK++ VPGKW L+N G Q +DG+W+L DHEI+D + +
Sbjct: 367 AIGLVNKSVDGLKDECXVPGKWRVLKNKGXAQQDDGSWELVDHEIDDNEDL 417
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 90 VLDEVERLLGVYDAEDEEASKTITSHTIGPVIA-------------VTVFSFGSPYVGDI 136
V D+VE L+ ++ + + T+T H++G +A V +++FG P G+
Sbjct: 107 VQDQVESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRSGNQ 166
Query: 137 EFKKLCD------SMEHLHMLRVRNLQDQIPSYP 164
F + S E RV + D IP+ P
Sbjct: 167 AFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 90 VLDEVERLLGVYDAEDEEASKTITSHTIGPVIA-------------VTVFSFGSPYVGDI 136
V D+VE L+ ++ + + T+T H++G +A V +++FG P G+
Sbjct: 107 VQDQVESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRSGNQ 166
Query: 137 EFKKLCD------SMEHLHMLRVRNLQDQIPSYP 164
F + S E RV + D IP+ P
Sbjct: 167 AFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 90 VLDEVERLLGVYDAEDEEASKTITSHTIGPVIA-------------VTVFSFGSPYVGDI 136
V D+VE L+ ++ + + T+T H++G +A V +++FG P G+
Sbjct: 107 VQDQVESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRSGNQ 166
Query: 137 EFKKLCD------SMEHLHMLRVRNLQDQIPSYP 164
F + S E RV + D IP+ P
Sbjct: 167 AFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 19/94 (20%)
Query: 90 VLDEVERLLGVYDAEDEEASKTITSHTIGPVIA-------------VTVFSFGSPYVGDI 136
V D+VE L+ ++ + + T+T H +G +A V +++FG P G+
Sbjct: 107 VQDQVESLVKQQASQYPDYALTVTGHALGASMAALTAAQLSATYDNVRLYTFGEPRSGNQ 166
Query: 137 EFKKLCD------SMEHLHMLRVRNLQDQIPSYP 164
F + S E RV + D IP+ P
Sbjct: 167 AFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 26/155 (16%)
Query: 27 EVTKFLYATSSSPLPAAFIFKSLSSECWHKESNWIGYIAVACDE----GKAALGRRDILT 82
+VT FL +++ L S S E NWIG + E G +
Sbjct: 62 DVTGFLALDNTNKLIVLSFRGSRSIE------NWIGNLNFDLKEINDICSGCRGHDGFTS 115
Query: 83 AWLRNEQVLDEVERLLGVYDAEDEEASKTITSHTIGPVIA-------------VTVFSFG 129
+W V D + + + E + T H++G +A + VFS+G
Sbjct: 116 SW---RSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYG 172
Query: 130 SPYVGDIEFKKLCDSMEHLHMLRVRNLQDQIPSYP 164
+P VG+ F + + R+ + D +P P
Sbjct: 173 APRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLP 207
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 26/155 (16%)
Query: 27 EVTKFLYATSSSPLPAAFIFKSLSSECWHKESNWIGYIAVACDE----GKAALGRRDILT 82
+VT FL +++ L S S E NWIG + E G +
Sbjct: 62 DVTGFLALDNTNKLIVLSFRGSRSIE------NWIGNLNFDLKEINDICSGCRGHDGFTS 115
Query: 83 AWLRNEQVLDEVERLLGVYDAEDEEASKTITSHTIGPVIA-------------VTVFSFG 129
+W V D + + + E + T H +G +A + VFS+G
Sbjct: 116 SW---RSVADTLRQKVEDAVREHPDYRVVFTGHALGGALATVAGADLRGNGYDIDVFSYG 172
Query: 130 SPYVGDIEFKKLCDSMEHLHMLRVRNLQDQIPSYP 164
+P VG+ F + + R+ + D +P P
Sbjct: 173 APRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLP 207
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 38 SPLPAAFIFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQVLD 92
SPLPAA K + + GY +C++G+ R + W R VLD
Sbjct: 2 SPLPAAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRL----RVLKPEWFRGRDVLD 52
>pdb|1ZW9|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor
8-(6-Bromo-
Benzo[1,
3]dioxol-5-Ylsulfanyl)-9-(3-Isopropylamino-Propyl)-
Adenine
pdb|1ZWH|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor
Radester Amine
pdb|2FXS|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor
Radamide
Length = 240
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 157 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 202
>pdb|2AKP|A Chain A, Hsp90 Delta24-n210 Mutant
pdb|2AKP|B Chain B, Hsp90 Delta24-n210 Mutant
Length = 186
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 113 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 158
>pdb|2YGF|A Chain A, L89v, L93i And V136m Mutant Of N-term Hsp90 Complexed With
Geldanamycin
Length = 220
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 44 FIFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 136 MISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
>pdb|2YGA|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With
Geldanamycin
Length = 220
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 137 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
>pdb|3C0E|A Chain A, Yeast Hsp82 N-Terminal Domain: Effects Of Mutants 98-99
Ks- Aa
pdb|3C11|A Chain A, Yeast Hsp82 N-Terminal Domain-Geldanamycin Complex:
Effects Of Mutants 98-99 Ks-Aa
Length = 240
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 157 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 202
>pdb|1AH8|A Chain A, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH8|B Chain B, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH6|A Chain A, Structure Of The Tetragonal Form Of The N-Terminal Domain
Of The Yeast Hsp90 Chaperone
Length = 220
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 137 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
>pdb|1A4H|A Chain A, Structure Of The N-Terminal Domain Of The Yeast Hsp90
Chaperone In Complex With Geldanamycin
Length = 230
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 147 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 192
>pdb|2YGE|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With
Geldanamycin
Length = 220
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 137 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
>pdb|2CGF|A Chain A, A Radicicol Analogue Bound To The Atp Binding Site Of The
N- Terminal Domain Of The Yeast Hsp90 Chaperone
Length = 225
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 148 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 193
>pdb|1BGQ|A Chain A, Radicicol Bound To The Atp Binding Site Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
Length = 225
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 148 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 193
>pdb|2BRE|A Chain A, Structure Of A Hsp90 Inhibitor Bound To The N-Terminus Of
Yeast Hsp90.
pdb|2BRE|B Chain B, Structure Of A Hsp90 Inhibitor Bound To The N-Terminus Of
Yeast Hsp90.
pdb|2VWC|A Chain A, Structure Of The Hsp90 Inhibitor Macbecin Bound To The N-
Terminus Of Yeast Hsp90
Length = 219
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 137 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
>pdb|2WEP|A Chain A, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Adp
pdb|2WEQ|A Chain A, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With
Geldanamycin
pdb|2WER|A Chain A, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Radicicol
pdb|2WER|B Chain B, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Radicicol
Length = 220
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 137 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
>pdb|2XX2|A Chain A, Macrolactone Inhibitor Bound To Hsp90 N-Term
pdb|2XX2|B Chain B, Macrolactone Inhibitor Bound To Hsp90 N-Term
pdb|2XX2|C Chain C, Macrolactone Inhibitor Bound To Hsp90 N-Term
pdb|2XX2|D Chain D, Macrolactone Inhibitor Bound To Hsp90 N-Term
Length = 214
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 137 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
>pdb|1AM1|A Chain A, Atp Binding Site In The Hsp90 Molecular Chaperone
Length = 213
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 136 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 181
>pdb|1US7|A Chain A, Complex Of Hsp90 And P50
pdb|2BRC|A Chain A, Structure Of A Hsp90 Inhibitor Bound To The N-Terminus Of
Yeast Hsp90.
pdb|2IWS|A Chain A, Radicicol Analogues Bound To The Atp Site Of Hsp90
pdb|2IWU|A Chain A, Analogues Of Radicicol Bound To The Atp-Binding Site Of
Hsp90
pdb|2IWX|A Chain A, Analogues Of Radicicol Bound To The Atp-Binding Site Of
Hsp90.
pdb|1AMW|A Chain A, Adp Binding Site In The Hsp90 Molecular Chaperone
pdb|2VW5|A Chain A, Structure Of The Hsp90 Inhibitor 7-O-Carbamoylpremacbecin
Bound To The N- Terminus Of Yeast Hsp90
pdb|2VW5|B Chain B, Structure Of The Hsp90 Inhibitor 7-O-Carbamoylpremacbecin
Bound To The N- Terminus Of Yeast Hsp90
pdb|2VW5|C Chain C, Structure Of The Hsp90 Inhibitor 7-O-Carbamoylpremacbecin
Bound To The N- Terminus Of Yeast Hsp90
pdb|2VW5|D Chain D, Structure Of The Hsp90 Inhibitor 7-O-Carbamoylpremacbecin
Bound To The N- Terminus Of Yeast Hsp90
pdb|2XD6|A Chain A, Hsp90 Complexed With A Resorcylic Acid Macrolactone.
pdb|2XX4|A Chain A, Macrolactone Inhibitor Bound To Hsp90 N-Term
pdb|2XX5|A Chain A, Macrolactone Inhibitor Bound To Hsp90 N-Term
Length = 214
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 137 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 45 IFKSLSSECWHKESNWIGYIAVACDEGKAALGRRDILTAWLRNEQV 90
I KS E + ESN G V DE +GR IL +L+++Q+
Sbjct: 137 ISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,412,515
Number of Sequences: 62578
Number of extensions: 307243
Number of successful extensions: 768
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 34
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)