BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047525
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 24/89 (26%)
Query: 224 HWYLAIMNIKDKTADIWDSLPNS------EIEPNHRQEIVKQNLHALDLVLFRDIAFNFP 277
HW L I+++K KT DSL N I + ++ +++++ H +
Sbjct: 114 HWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIG------------ 161
Query: 278 SDWYFADFDILYPNNVPIQPNGNDCGLYV 306
DFD+++ + P QPNG DCG+YV
Sbjct: 162 -----EDFDLIHLD-CPQQPNGYDCGIYV 184
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 24/89 (26%)
Query: 224 HWYLAIMNIKDKTADIWDSLPNS------EIEPNHRQEIVKQNLHALDLVLFRDIAFNFP 277
HW L I+++K KT DSL N I + ++ +++++ H +
Sbjct: 114 HWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIG------------ 161
Query: 278 SDWYFADFDILYPNNVPIQPNGNDCGLYV 306
DFD+++ + P QPNG D G+YV
Sbjct: 162 -----EDFDLIHL-DCPQQPNGYDXGIYV 184
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHR-QEIVKQNLHALDLVLFRD 271
I VP++ + HW L +++++ K DS+ + HR EI+ Q L + R+
Sbjct: 106 ILVPIHRKV--HWSLVVIDLRKKCLKYLDSMG----QKGHRICEILLQYLQD-ESKTKRN 158
Query: 272 IAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKF 309
N +W + P+ +P Q NG+DCG++ K+
Sbjct: 159 SDLNL-LEWTHHS---MKPHEIPQQLNGSDCGMFTCKY 192
>pdb|3OKQ|A Chain A, Crystal Structure Of A Core Domain Of Yeast Actin
Nucleation Cofactor Bud6
Length = 141
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 50 RYELGELKRNNLDSYALVQKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSK 104
+ ELG+L L + V + V+E + ++ +S P K+K+ + SKD++N++
Sbjct: 16 QTELGDLSDTLL---SKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQ 67
>pdb|3ONX|A Chain A, Crystal Structure Of A Domain Of A Protein Involved In
Formation Of Actin Cytoskeleton
pdb|3ONX|B Chain B, Crystal Structure Of A Domain Of A Protein Involved In
Formation Of Actin Cytoskeleton
Length = 141
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 50 RYELGELKRNNLDSYALVQKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSK 104
+ ELG+L L + V + V+E ++ +S P K+K+ + SKD++N++
Sbjct: 16 QTELGDLSDTLL---SKVDDLQDVIEIXRKDVAERRSQPAKKKLETVSKDLENAQ 67
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 293 VPIQPNGNDCGLYVMKFMET 312
VP Q N +DCG+Y+++++E+
Sbjct: 256 VPKQDNSSDCGVYLLQYVES 275
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHR-QEIVKQNLHALDLVLFRD 271
I VP++ + HW L +++++ K DS+ + HR EI+ Q L + R+
Sbjct: 112 ILVPIHRKV--HWSLVVIDLRKKCLKYLDSMG----QKGHRICEILLQYLQD-ESKTKRN 164
Query: 272 IAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKF 309
N +W + P+ +P Q NG+D G++ K+
Sbjct: 165 SDLNL-LEWTHHS---MKPHEIPQQLNGSDSGMFTCKY 198
>pdb|4DX6|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 28.5 bits (62), Expect = 5.2, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 108 SGQNFVGKGDEFGVKIAEIKDKIEDTCDEN----LSLKNLFAYRKLKENQIF 155
+G NF G+G G+ +KD + +EN ++++ A+ ++K+ +F
Sbjct: 613 NGFNFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVF 664
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 147 RKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYE 181
RKL++ H V K++ +C AE+ T + YE
Sbjct: 514 RKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYE 548
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 147 RKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYE 181
RKL++ H V K++ +C AE+ T + YE
Sbjct: 514 RKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYE 548
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 147 RKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYE 181
RKL++ H V K++ +C AE+ T + YE
Sbjct: 514 RKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYE 548
>pdb|2Q0J|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
pdb|2Q0J|B Chain B, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 321
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 237 ADIWDSLPNS--------EIEPNHRQEIVKQNLHALDLVLFRDI 272
A WD+LP E+ P HR ++++ + H+ D V+F D+
Sbjct: 146 ACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDV 189
>pdb|2VW8|A Chain A, Crystal Structure Of Quinolone Signal Response Protein
Pqse From Pseudomonas Aeruginosa
Length = 303
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 237 ADIWDSLPNS--------EIEPNHRQEIVKQNLHALDLVLFRDI 272
A WD+LP E+ P HR ++++ + H+ D V+F D+
Sbjct: 128 ACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDV 171
>pdb|3DH8|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 303
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 237 ADIWDSLPNS--------EIEPNHRQEIVKQNLHALDLVLFRDI 272
A WD+LP E+ P HR ++++ + H+ D V+F D+
Sbjct: 128 ACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDV 171
>pdb|2Q0I|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 303
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 237 ADIWDSLPNS--------EIEPNHRQEIVKQNLHALDLVLFRDI 272
A WD+LP E+ P HR ++++ + H+ D V+F D+
Sbjct: 128 ACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDV 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,745,026
Number of Sequences: 62578
Number of extensions: 462610
Number of successful extensions: 1169
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 30
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)