BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047525
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 26/175 (14%)
Query: 161 KIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIY------ 214
+II+ Y + + + + Y F + IV+ G +++ R ++ I+
Sbjct: 520 EIINFYLQLICDRSNGDSKYPKIYAFNTFFYSNIVSK--GYASVKRWTRKVDIFAFDIVL 577
Query: 215 VPLYDGLAKHWYLAIMNIKDKTADIWDSL--PNSEIEPNHRQEIVKQNLHALDLVLFRDI 272
VP++ G+ HW +A++++ +K + +DSL N+ + P R + ++L +
Sbjct: 578 VPVHLGM--HWCMAVIDMGEKKIEFYDSLYDGNTAVLPALRGYLEAESLDK------KKT 629
Query: 273 AFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFP--TYKSLP 325
A NF S W ++P Q NG+DCG++ +F E P T K++P
Sbjct: 630 AMNF-SGWTIQQM-----TDIPRQQNGSDCGVFSCQFGEWASRRTTPRFTQKNMP 678
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDI 272
I++P++ + HW LA++NIKD+ DS E + L AL ++
Sbjct: 384 IFIPIHMNI--HWTLAVINIKDQKFQYLDSFKGRE----------PKILDALARYFVDEV 431
Query: 273 AFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
D + + + ++P+Q NG DCG++++K+++
Sbjct: 432 RDKSEVDLDVSRWRQEFVQDLPMQRNGFDCGMFMVKYID 470
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 135/311 (43%), Gaps = 50/311 (16%)
Query: 11 KSIKRNGEGEANFRNC---NHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALV 67
+S KR +G+A+ EKE T+ ++ ++ ++A R LG S L+
Sbjct: 286 RSEKRYSKGKADTEKVVGLRFEKEGTRGHQMEPDLSEEVSA-RLRLGS------GSNGLL 338
Query: 68 QKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSKNESSGQNFVGKGDEFGVKIAEIK 127
++ SV+E E N + E + +++D++ + + G G DE I
Sbjct: 339 RRKISVLEIKEKNFPSKEKDRRTEDLFEFTEDMEKEISNALGH---GPPDE----ILSSA 391
Query: 128 DKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFL 187
K+ T + +LKN +H + ++I+ Y L + S KQ Y + F
Sbjct: 392 FKLRITRGDIQTLKN------------YHWLNDEVINFYMNLLV-ERSKKQGYPALHAFS 438
Query: 188 PTLFGQIVANVSGVSTIDRSDIEISIY------VPLYDGLAKHWYLAIMNIKDKTADIWD 241
+ ++ + G + R ++++ VP++ + HW L +M+++ K D
Sbjct: 439 TFFYPKLKSG--GYQAVKRWTKGVNLFEQELVLVPIHRKV--HWSLVVMDLRKKCLKYLD 494
Query: 242 SLPNSEIEPNHR-QEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGN 300
S+ + HR EI+ Q L + R+ N +++ + P+ +P Q NG+
Sbjct: 495 SMG----QKGHRICEILLQYLQD-ESKTKRNTDLNLLEWTHYS----MKPHEIPQQLNGS 545
Query: 301 DCGLYVMKFME 311
DCG++ K+ +
Sbjct: 546 DCGMFTCKYAD 556
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 224 HWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDI---AFNFPSDW 280
HW L I+++K KT DSL N PN A+ + D+
Sbjct: 514 HWALGIIDLKKKTIGYVDSLSNG---PN-----------AMSFAILTDLQKYVMEESKHT 559
Query: 281 YFADFDILYPNNVPIQPNGNDCGLYV 306
DFD+++ + P QPNG DCG+YV
Sbjct: 560 IGEDFDLIHLD-CPQQPNGYDCGIYV 584
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1
Length = 568
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Query: 212 SIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNS--EIEPNHRQEIVKQNLHALDLVLF 269
++++P++ L HW +A++N K + WDSL S ++ R + + A+D+
Sbjct: 453 AVFIPVH--LDVHWCMAVINKSKKRFEYWDSLAGSPGKVFDLLRDYYIAETKGAVDV--- 507
Query: 270 RDIAFNFPSDWY-FADFDILYPNNVPIQPNGNDCGLYVMKFME 311
SDW F D +N P Q NG+DCG++ K E
Sbjct: 508 --------SDWENFMD------DNSPRQRNGHDCGVFACKTAE 536
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 133/313 (42%), Gaps = 54/313 (17%)
Query: 11 KSIKRNGEGEANFRNC---NHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALV 67
+S KR +G+A+ EK+ T+ ++ ++ ++A R LG S L+
Sbjct: 286 RSEKRYSKGKADTEKVVGLRFEKDGTRGHQLEPDLSEEVSA-RLRLGS------GSNGLL 338
Query: 68 QKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSKNESSGQNFVGKGDEFGVKIAEIK 127
++ SV+EA E N + E + ++D++ + + G G DE I
Sbjct: 339 RRKISVLEAKEKNFPSKEKDRRTEDLFELTEDMEKEISNALGH---GPPDE----ILSSA 391
Query: 128 DKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYET----R 183
K+ T + +LKN +H + ++I+ Y L + S KQ Y
Sbjct: 392 FKLRITRGDIQTLKN------------YHWLNDEVINFYMNLLV-ERSKKQGYPALHALS 438
Query: 184 NWFLPTL----FGQIVANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADI 239
+F P L + + GV+ D+ + + I+ + HW L +M+++ K
Sbjct: 439 TFFYPKLKSGGYQAVKRWTKGVNLFDQELVLVPIHRKV------HWSLVVMDLRKKCLKY 492
Query: 240 WDSLPNSEIEPNHR-QEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPN 298
DS+ + HR EI+ Q L + R+ N +++ + P+ +P Q N
Sbjct: 493 LDSMG----QKGHRICEILLQYLQD-ESKTKRNTDLNLLEWTHYS----MKPHEIPQQLN 543
Query: 299 GNDCGLYVMKFME 311
G+DCG++ K+ +
Sbjct: 544 GSDCGMFTCKYAD 556
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHR-QEIVKQNLHALDLVLFRD 271
I VP++ + HW L +++++ K DS+ + HR EI+ Q L + R+
Sbjct: 469 ILVPIHRKV--HWSLVVIDLRKKCLKYLDSMG----QKGHRICEILLQYLQD-ESKTKRN 521
Query: 272 IAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
I N +++ + P+ +P Q NG+DCG++ K+ +
Sbjct: 522 IDLNLLEWTHYS----MKPHEIPQQLNGSDCGMFTCKYAD 557
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDI 272
I+VP++ G+ HW LA++N ++ DSL + ++P + K + + I
Sbjct: 371 IFVPIHRGV--HWTLAVINNRESKLLYLDSL--NGVDPMILNALAKYMGDEANEKSGKKI 426
Query: 273 AFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
N W D+ + ++P Q NG DCG++++K+++
Sbjct: 427 DAN---SW-----DMEFVEDLPQQKNGYDCGMFMLKYID 457
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHR-QEIVKQNLHALDLVLFRD 271
I VP++ + HW L +++++ K DS+ + HR EI+ Q L + R+
Sbjct: 469 ILVPIHRKV--HWSLVVIDLRKKCLKYLDSMG----QKGHRICEILLQYLQD-ESKTKRN 521
Query: 272 IAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
N +W + P+ +P Q NG+DCG++ K+ +
Sbjct: 522 SDLNL-LEWTHHS---MKPHEIPQQLNGSDCGMFTCKYAD 557
>sp|Q96SN8|CK5P2_HUMAN CDK5 regulatory subunit-associated protein 2 OS=Homo sapiens
GN=CDK5RAP2 PE=1 SV=5
Length = 1893
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 11/174 (6%)
Query: 8 GLHKSIKRNGEGEANFRNCNHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALV 67
GL + + E E H+KE E++ + +L E+ K+N+L +
Sbjct: 261 GLCAAPREEKERETEAAQMEHQKERNSFEERIQALEEDLREKEREIATEKKNSLKRDKAI 320
Query: 68 QKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSKNESSGQNFVGKGDEFGVKIAEIK 127
Q + +++ E + + S EK+++ + + ++ Q F G D E
Sbjct: 321 QGLTMALKSKEKKVEELNSE--IEKLSAAFAKAREALQKAQTQEFQGSED------YETA 372
Query: 128 DKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYE 181
++ L +NL K EN +KKI ++ +E L++D E
Sbjct: 373 LSGKEALSAALRSQNL---TKSTENHRLRRSIKKITQELSDLQQERERLEKDLE 423
>sp|Q03SQ9|CH60_LACBA 60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM
1170) GN=groL PE=3 SV=1
Length = 541
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 38 KMDGMTFNLAAVRY-ELGELKRNNLDSYALVQKMYSVVEALEHNI--THMQSHPWKEKMN 94
KM G TFN+ AV+ G+ ++ L A++ + + L N+ T + +K+N
Sbjct: 264 KMRG-TFNVVAVKAPGFGDRRKAQLQDIAVLTGGTVITDDLGLNLKDTTIDQLGQAQKVN 322
Query: 95 SYSKDVQNSKNESSGQNFVGKGDEFGVKIAEIKDKIEDTCDENLSLKNLFAYRKLKE 151
+K++++ G D+ ++AEIK +IEDT + F KLKE
Sbjct: 323 V-------TKDDTTVVEGAGSKDQIAARVAEIKGQIEDTTSD-------FDRDKLKE 365
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDI 272
I+VP++ + HW L ++N +++ DSL + L+A+ L ++
Sbjct: 222 IFVPIHIDI--HWTLGVINNRERKFVYLDSLFTG---------VGHTILNAMAKYLVDEV 270
Query: 273 AFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
+ + + + Y P Q NG DCG++++K+++
Sbjct: 271 KQKSQKNIDVSSWGMEYVEERPQQQNGYDCGMFMLKYID 309
>sp|A1JNM3|QUEC_YERE8 7-cyano-7-deazaguanine synthase OS=Yersinia enterocolitica serotype
O:8 / biotype 1B (strain 8081) GN=queC PE=3 SV=1
Length = 232
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 250 PNHRQEIVKQNLHALDLVLFRDIAFNFPSDW 280
P+ R E VK HA+DL + RDIAF P W
Sbjct: 133 PDCRDEFVKALNHAIDLGIGRDIAFITPLMW 163
>sp|P40537|ULP2_YEAST Ubiquitin-like-specific protease 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP2 PE=1 SV=1
Length = 1034
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 293 VPIQPNGNDCGLYVM----KFMETPCELL 317
VP QPN +DCG++V+ KF E P E +
Sbjct: 615 VPQQPNMSDCGVHVILNIRKFFENPVETI 643
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=USO1 PE=1 SV=2
Length = 1790
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 29/225 (12%)
Query: 15 RNGEGEANFRNCNHEKELTKLNEKMDGMTFNLAAVRYELGELKR--NNLDSYALVQKMYS 72
+N + E + N NH+KE L E + + A+ L E+K NNL +K +
Sbjct: 884 KNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSK----EKEHI 939
Query: 73 VVEALEHNITHMQSH-----PWKEKMNSYS---KDVQNSKNESSGQNFVGKGDEFGVKIA 124
E +E+ + QSH EK+ S + KD+Q ++NES + +E ++++
Sbjct: 940 SKELVEYK-SRFQSHDNLVAKLTEKLKSLANNYKDMQ-AENESLIKAVEESKNESSIQLS 997
Query: 125 EIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIIS----CYAEYLTGKESLKQDY 180
+++KI+ E +N R E I +KK IS E ++ +S K +Y
Sbjct: 998 NLQNKIDSMSQEK---ENFQIERGSIEKNIEQ--LKKTISDLEQTKEEIISKSDSSKDEY 1052
Query: 181 ETRNWFLPTLFGQIVA----NVSGVSTIDRSDIEISIYVPLYDGL 221
E++ L NV+ +S + ++ E+ + Y L
Sbjct: 1053 ESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNL 1097
>sp|Q19UN5|CK5P2_PANTR CDK5 regulatory subunit-associated protein 2 OS=Pan troglodytes
GN=CDK5RAP2 PE=2 SV=1
Length = 1893
Score = 31.6 bits (70), Expect = 8.2, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 11/174 (6%)
Query: 8 GLHKSIKRNGEGEANFRNCNHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALV 67
GL + + E H+KE E++ + +L E+ K+N+L +
Sbjct: 261 GLCAAPREEKXRETEAAQMEHQKERNSFEERIQALEEDLREKEREIATEKKNSLKRDKAI 320
Query: 68 QKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSKNESSGQNFVGKGDEFGVKIAEIK 127
Q + +++ E + + S EK+ + + + ++ Q F G D E
Sbjct: 321 QGLTMALKSKEKXVEELNSE--IEKLXAAFAKAREALQKAQTQEFQGSED------YETA 372
Query: 128 DKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYE 181
++ L +NL K EN +KKI ++ +E L++D E
Sbjct: 373 LSGKEALSAALRSQNL---TKSTENHRLRRSIKKITQELSDLQQERERLEKDLE 423
>sp|Q54R74|WASH7_DICDI WASH complex subunit 7 homolog OS=Dictyostelium discoideum
GN=DDB_G0283355 PE=1 SV=1
Length = 1135
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Query: 109 GQNFVGKGDEFGVKIAEIKDKIEDTCDENLS------LKNLFAYRKLKEN-------QIF 155
G+ + K ++F V A+ KIE+ DE L+ + + Y K E +
Sbjct: 29 GEQQLTKLNQFAVDYAQQIWKIEEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTD 88
Query: 156 HNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIYV 215
H + K+I ++ LK+ E++ + T+FG+I +G S+ IE+ +
Sbjct: 89 HKIFNKVILVFSSICNQTRILKETAESKFYSPLTVFGEI----TGESSEGDVQIEVGKLL 144
Query: 216 PLYDGLAK---HWYLAIMNIKDKTADIWDSLPN 245
P L+ Y I NI + A I+ S N
Sbjct: 145 PFMIDLSAFVNRCYSLIRNIISQFASIYQSQKN 177
>sp|Q03442|CRJ1A_TRICY Crystallin J1A OS=Tripedalia cystophora PE=1 SV=1
Length = 322
Score = 31.6 bits (70), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 261 LHALDLVLFRDIAFNFPSD-----WYFADFDILYPNNVPIQPNGNDCGL 304
LH D FR + NFP D W A +D NN ++ G+ CGL
Sbjct: 196 LHGRDPEAFRKVLNNFPDDQYKFEWQKAYYDRDLSNNDAVRKYGSGCGL 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,558,990
Number of Sequences: 539616
Number of extensions: 5761938
Number of successful extensions: 14664
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 14618
Number of HSP's gapped (non-prelim): 91
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)