Query 047525
Match_columns 340
No_of_seqs 174 out of 927
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 1.4E-37 4.7E-42 286.1 12.3 175 145-337 38-222 (226)
2 2xph_A Sentrin-specific protea 100.0 1.7E-37 5.7E-42 287.8 11.2 176 144-337 49-234 (238)
3 1euv_A ULP1 protease; SUMO hyd 100.0 2.8E-35 9.7E-40 270.0 10.5 171 145-337 39-217 (221)
4 3eay_A Sentrin-specific protea 100.0 5.1E-35 1.7E-39 281.8 11.2 176 145-337 39-312 (323)
5 2bkr_A Sentrin-specific protea 100.0 1.9E-33 6.3E-38 256.0 6.1 168 145-337 17-208 (212)
6 2oix_A Xanthomonas outer prote 100.0 2E-30 6.9E-35 232.3 7.2 160 151-337 1-180 (186)
7 4ekf_A Adenain; alpha and beta 95.6 0.038 1.3E-06 49.0 8.1 86 216-311 42-131 (204)
8 2pnv_A Small conductance calci 7.9 1.4E+02 0.0047 19.9 1.1 22 64-85 8-29 (43)
9 1iyc_A Scarabaecin; antifungal 7.4 1.1E+02 0.0038 19.0 0.4 12 291-302 16-29 (36)
10 2cxa_A Leucyl/phenylalanyl-tRN 6.2 2.3E+02 0.0078 25.9 2.0 19 150-171 124-142 (256)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=1.4e-37 Score=286.13 Aligned_cols=175 Identities=20% Similarity=0.314 Sum_probs=143.8
Q ss_pred hcccCCCCCccccCchhHHHHHHHHHHcC---CCCCCcceeeccccchhccccccCcc---ccccCCcCCCCceEEEEee
Q 047525 145 AYRKLKENQIFHNVVKKIISCYAEYLTGK---ESLKQDYETRNWFLPTLFGQIVANVS---GVSTIDRSDIEISIYVPLY 218 (340)
Q Consensus 145 ~~~sL~pg~wLNd~vD~IInfYl~~L~~~---~~~~kv~~fnsfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfIPIN 218 (340)
++.+|+||+||| |+|||||++||.++ ...+++|+|+||||++|...+|.+++ +.+++|++++ ||||||
T Consensus 38 Dl~~L~~~~wLN---D~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~~~~~~v~~w~~~~~l~~~~~---i~iPin 111 (226)
T 1th0_A 38 DIQTLKNYHWLN---DEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEI---ILVPIH 111 (226)
T ss_dssp HHGGGSTTCCCC---HHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSE---EEEEEE
T ss_pred HHhhcCCCCccC---hHHHHHHHHHHHHhhhhccCCcEEEEeHHHHHHhhhcccHHHHHHhhcCCcccCCE---EEEeEE
Confidence 578999999999 99999999999854 23578999999999999988888776 6789999995 999999
Q ss_pred cCCCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceee--CCCCcCCC
Q 047525 219 DGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDIL--YPNNVPIQ 296 (340)
Q Consensus 219 ~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~--~p~~vPqQ 296 (340)
. +.||+|+|||.++++|.|||||++.+..... .+++|+..+. +.+ .+..++.+.|++. .+.++|||
T Consensus 112 ~--~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~---~l~~~l~~e~---~~k----~~~~~~~~~w~~~~~~~~~~PqQ 179 (226)
T 1th0_A 112 R--KVHWSLVVIDLRKKCLKYLDSMGQKGHRICE---ILLQYLQDES---KTK----RNSDLNLLEWTHHSMKPHEIPQQ 179 (226)
T ss_dssp E--TTEEEEEEEETTTTEEEEECTTCCCCHHHHH---HHHHHHHHHH---HHH----TSCCCCGGGCEEEECCTTTSCCC
T ss_pred e--CcEEEEEEEEcCCCceEEEcCCCCCchHHHH---HHHHHHHHHH---HHh----cCCCCCcccceeccccCCCCCCC
Confidence 9 6999999999999999999999998654443 6777776543 221 2445666788864 34569999
Q ss_pred CCCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhh
Q 047525 297 PNGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVED 337 (340)
Q Consensus 297 ~N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~ 337 (340)
.||+|||||||+||+......+.+|+ |||.+|++|+..+-.
T Consensus 180 ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~ 222 (226)
T 1th0_A 180 LNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILH 222 (226)
T ss_dssp CSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHh
Confidence 99999999999999954444456787 999999999988754
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=1.7e-37 Score=287.78 Aligned_cols=176 Identities=19% Similarity=0.315 Sum_probs=143.6
Q ss_pred hhcccCCCCCccccCchhHHHHHHHHHHcC---CCCCCcceeeccccchhccccccCcc---ccccCCcCCCCceEEEEe
Q 047525 144 FAYRKLKENQIFHNVVKKIISCYAEYLTGK---ESLKQDYETRNWFLPTLFGQIVANVS---GVSTIDRSDIEISIYVPL 217 (340)
Q Consensus 144 ~~~~sL~pg~wLNd~vD~IInfYl~~L~~~---~~~~kv~~fnsfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfIPI 217 (340)
.++.+|+||+||| |+|||||++||.++ +..+++|+|+||||++|...||..++ +.+++|++++ |||||
T Consensus 49 ~Dl~~L~~~~wLN---D~iI~fy~~~L~~~~~~~~~~~~~~f~sff~~~l~~~~~~~v~~w~~~~~l~~~~~---i~iPi 122 (238)
T 2xph_A 49 KDIQTLNHLNWLN---DEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDI---LLVPI 122 (238)
T ss_dssp HHHHTTSTTCCCC---HHHHHHHHHHHHHHTTSTTSCCEEECCTTTTHHHHTTCHHHHTTTTTTCCGGGSSE---EEEEE
T ss_pred HHHhhcCCCCccC---HHHHHHHHHHHHHhhhhcCCCceeeeecHHHHHhhhcccHHHHHHhccCCcccCCE---EEEcc
Confidence 3578999999999 99999999999854 23578999999999999888877775 6789999995 99999
Q ss_pred ecCCCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceee--CCCCcCC
Q 047525 218 YDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDIL--YPNNVPI 295 (340)
Q Consensus 218 N~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~--~p~~vPq 295 (340)
|. +.||+|+|||.++++|.|||||++.+..... .+.+||..+. ..+ .+..++...|++. .+.++||
T Consensus 123 n~--~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~---~l~~~L~~e~---~~k----~~~~~~~~~w~~~~~~~~~~Pq 190 (238)
T 2xph_A 123 HL--GVHWCLAVVDFRKKNITYYDSMGGINNEACR---ILLQYLKQES---IDK----KRKEFDTNGWQLFSKKSQEIPQ 190 (238)
T ss_dssp EE--TTEEEEEEEETTTTEEEEECTTCCCCHHHHH---HHHHHHHHHH---HHH----HCSCCCCTTCEEEECCSSSSCC
T ss_pred cC--CCceEEEEEEcccceEEEeecccCCCHHHHH---HHHHHHHHHH---HHh----cCCCcCcccceecccCCCCCCC
Confidence 99 6999999999999999999999988755444 6677776543 111 1345666788864 3556999
Q ss_pred CCCCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhh
Q 047525 296 QPNGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVED 337 (340)
Q Consensus 296 Q~N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~ 337 (340)
|.||+|||||||+||+......+.+|+ |||.+|++|+..+-+
T Consensus 191 Q~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~ 234 (238)
T 2xph_A 191 QMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILH 234 (238)
T ss_dssp CSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHh
Confidence 999999999999999954444455787 999999999987754
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=2.8e-35 Score=269.99 Aligned_cols=171 Identities=22% Similarity=0.335 Sum_probs=133.4
Q ss_pred hcccCCCCCccccCchhHHHHHHHHHHcCCCCCCcceeeccccchhccccccCcc-----ccccCCcCCCCceEEEEeec
Q 047525 145 AYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVS-----GVSTIDRSDIEISIYVPLYD 219 (340)
Q Consensus 145 ~~~sL~pg~wLNd~vD~IInfYl~~L~~~~~~~kv~~fnsfF~~~L~~~g~~~vk-----k~~dlf~kd~~~~IfIPIN~ 219 (340)
++.+|+||+||| |+|||||++||.+. .+++++|+||||++|...||.+++ +.+++|++++ ||||||.
T Consensus 39 Dl~~L~~~~wLN---D~vI~fy~~~l~~~--~~~~~~f~s~f~~~l~~~~~~~v~rw~~~~~~~~~~~~~---i~iPin~ 110 (221)
T 1euv_A 39 DFKTLAPRRWLN---DTIIEFFMKYIEKS--TPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDK---IFTPINL 110 (221)
T ss_dssp HHGGGSTTCCCB---HHHHHHHHHHHHHH--STTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCSE---EEEEEEE
T ss_pred HHhhhcCCCCCC---HHHHHHHHHHHHhc--CCCeEEEEcHHHHHhhhhccHHHHHHHHhccCCcccCCE---EEEEEEc
Confidence 578999999999 99999999999865 368999999999999988888885 2569999995 9999999
Q ss_pred CCCCceEEEEEEeCCCceEEecCCCCCCCCcc-cHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCCcCCCCC
Q 047525 220 GLAKHWYLAIMNIKDKTADIWDSLPNSEIEPN-HRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPN 298 (340)
Q Consensus 220 ~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~-~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~vPqQ~N 298 (340)
+ +.||+|+|||+++++|.|||||++...... .....+++|+..+. ++ ..+ ..|++..+ ++|||.|
T Consensus 111 ~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~---~~----~~~-----~~~~~~~~-~~PqQ~N 176 (221)
T 1euv_A 111 N-QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEES---KH----TIG-----EDFDLIHL-DCPQQPN 176 (221)
T ss_dssp T-TTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHT---TS----SSC-----TTCEEEEE-CCCCCSS
T ss_pred C-CCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH---HH----hcC-----CCceEeec-CCCCCCC
Confidence 6 699999999999999999999987543211 11124555554321 11 112 23444444 5999999
Q ss_pred CCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhh
Q 047525 299 GNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVED 337 (340)
Q Consensus 299 ~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~ 337 (340)
|+|||||||+||+......+.+|+ |||.+|++|+..+..
T Consensus 177 ~~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~ 217 (221)
T 1euv_A 177 GYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILT 217 (221)
T ss_dssp SSTHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 999999999999954433445788 999999999988754
No 4
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=281.85 Aligned_cols=176 Identities=23% Similarity=0.322 Sum_probs=136.6
Q ss_pred hcccCCCCCccccCchhHHHHHHHHHH-cCCC---CCCcceeeccccchhccc----------------cccCcc---cc
Q 047525 145 AYRKLKENQIFHNVVKKIISCYAEYLT-GKES---LKQDYETRNWFLPTLFGQ----------------IVANVS---GV 201 (340)
Q Consensus 145 ~~~sL~pg~wLNd~vD~IInfYl~~L~-~~~~---~~kv~~fnsfF~~~L~~~----------------g~~~vk---k~ 201 (340)
++.+|.|++||| |+|||||++||. ++.. .+++|+||||||++|... +|.+|+ ++
T Consensus 39 Dl~~L~~~~wLN---D~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~VrrWtrk 115 (323)
T 3eay_A 39 DLECLEEGEFLN---DVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRH 115 (323)
T ss_dssp HHHTTSTTCCCC---HHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCSCHHHHHHTTSGGGGTT
T ss_pred HHHhhCCCCCcC---HHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccchhHHHHHHHHHHHHhh
Confidence 468999999999 999999999996 3422 358999999999999753 467776 77
Q ss_pred ccCCcCCCCceEEEEeecCCCCceEEEEEEeCC-----------------------------------------------
Q 047525 202 STIDRSDIEISIYVPLYDGLAKHWYLAIMNIKD----------------------------------------------- 234 (340)
Q Consensus 202 ~dlf~kd~~~~IfIPIN~~~~~HW~L~VId~~~----------------------------------------------- 234 (340)
++||++|+ ||||||. +.||+|+|||++.
T Consensus 116 vdlf~kD~---I~IPIn~--~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 190 (323)
T 3eay_A 116 INIFNKDY---IFVPVNE--SSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQ 190 (323)
T ss_dssp CCGGGCSE---EEEEEEE--TTEEEEEEEECTTCSSCBCC----------------------------------------
T ss_pred cccccCCE---EEEecCC--CCceEEEEEecCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999996 9999999 5999999999873
Q ss_pred ---------------CceEEecCCCCCC-CCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCCcCCCCC
Q 047525 235 ---------------KTADIWDSLPNSE-IEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPN 298 (340)
Q Consensus 235 ---------------~~I~~~DSL~~~~-~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~vPqQ~N 298 (340)
+||.|||||++.. .... ..|+.||..+.-. ++ .....++...|....|. +|+|.|
T Consensus 191 ~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~---~~Lr~YL~~E~~~-k~----~~~~~f~~~~~~~~~~~-~P~Q~N 261 (323)
T 3eay_A 191 STESNMSVPKKMCKRPCILILDSLKAASVQNTV---QNLREYLEVEWEV-KL----KTHRQFSKTNMVDLCPK-VPKQDN 261 (323)
T ss_dssp ---------CCCCBCSEEEEECSSCCSSHHHHH---HHHHHHHHHHHHH-HH----SSCCCCCTTTSCEECCB-CCCCCS
T ss_pred ccccccccccccCCCCeEEEEECCCCCCcchHH---HHHHHHHHHHHHh-hc----CCCcCCCHhHceeccCC-CCCcCC
Confidence 2799999999964 3333 4889999877521 21 12445666778777776 999999
Q ss_pred CCchHHHHHHHcccccccc----------CCCCC--CCCcccHHHHHHHhh
Q 047525 299 GNDCGLYVMKFMETPCELL----------FPTYK--SLPNVDWSILAVVED 337 (340)
Q Consensus 299 ~~DCGVFVl~fae~~~~~l----------~~~F~--dip~iR~~i~~~~~~ 337 (340)
++|||||||+||+..+... ...|. +|...|..|+.++.+
T Consensus 262 ~~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~ 312 (323)
T 3eay_A 262 SSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILK 312 (323)
T ss_dssp TTCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999322222 12454 677888888888764
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.98 E-value=1.9e-33 Score=255.96 Aligned_cols=168 Identities=17% Similarity=0.251 Sum_probs=124.3
Q ss_pred hcccCCCCCccccCchhHHHHHHHHHHcCC---CCCCcceee---ccccchhccccccCcc---ccccCCcCCCCceEEE
Q 047525 145 AYRKLKENQIFHNVVKKIISCYAEYLTGKE---SLKQDYETR---NWFLPTLFGQIVANVS---GVSTIDRSDIEISIYV 215 (340)
Q Consensus 145 ~~~sL~pg~wLNd~vD~IInfYl~~L~~~~---~~~kv~~fn---sfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfI 215 (340)
++.+|+|++||| |+|||||++||.++. ..+++++++ ||||..+.. ++.++ +.++++++++ |||
T Consensus 17 Dl~~L~~~~wLN---D~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~~--~~~v~~~~~~~~l~~~~~---i~i 88 (212)
T 2bkr_A 17 DVSLLDPPSWLN---DHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSN--PAEIAMFLEPLDLPNKRV---VFL 88 (212)
T ss_dssp HHHTTSTTSCCB---HHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCCC--HHHHHHHHGGGTGGGCSE---EEE
T ss_pred HHhhcCCCCCcC---HHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCCC--HHHHHHHhcccccccCCE---EEE
Confidence 578999999999 999999999999762 246799999 999966643 34444 6779999995 999
Q ss_pred EeecC-----CCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCC
Q 047525 216 PLYDG-----LAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYP 290 (340)
Q Consensus 216 PIN~~-----~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p 290 (340)
|||.+ ++.||+|+||+.++++|.|||||++.+..... .+...|. .++ .. .+. .|.+..+
T Consensus 89 PIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~---~l~~~l~--~~l-~~--------~~~--~~~~~~~ 152 (212)
T 2bkr_A 89 AINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAK---QVAEKLE--AFL-GR--------KGD--KLAFVEE 152 (212)
T ss_dssp EEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHH---HHHHHHH--HHH-SC--------TTC--CCCEEEC
T ss_pred EEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHH---HHHHHHH--HHh-CC--------ccc--cceEeEC
Confidence 99962 37999999999999999999999987544322 2222222 222 11 111 2333334
Q ss_pred CCcCCCCCCCchHHHHHHHccccc-ccc-------CCCCC--CCCcccHHHHHHHhh
Q 047525 291 NNVPIQPNGNDCGLYVMKFMETPC-ELL-------FPTYK--SLPNVDWSILAVVED 337 (340)
Q Consensus 291 ~~vPqQ~N~~DCGVFVl~fae~~~-~~l-------~~~F~--dip~iR~~i~~~~~~ 337 (340)
++|||.||+|||||||+||+... ..+ ...|+ +|+.+|..|++++.+
T Consensus 153 -~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~ 208 (212)
T 2bkr_A 153 -KAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIAT 208 (212)
T ss_dssp -CCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999322 111 12455 899999999999875
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.96 E-value=2e-30 Score=232.30 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=107.2
Q ss_pred CCCccccCchhHHHHHHHHHHcCCC---C-CCcceeec---cccchhccccccCccccccCCc-CCCCceEEEEeecCCC
Q 047525 151 ENQIFHNVVKKIISCYAEYLTGKES---L-KQDYETRN---WFLPTLFGQIVANVSGVSTIDR-SDIEISIYVPLYDGLA 222 (340)
Q Consensus 151 pg~wLNd~vD~IInfYl~~L~~~~~---~-~kv~~fns---fF~~~L~~~g~~~vkk~~dlf~-kd~~~~IfIPIN~~~~ 222 (340)
.|+||| |+|||||++||.++.. . .+++++++ ||+......++..+.+..+.++ +++ ||||||.+ +
T Consensus 1 ~~~WLN---D~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---i~iPin~~-~ 73 (186)
T 2oix_A 1 ATSWLL---DGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDIPPI---VFLPINQP-N 73 (186)
T ss_dssp -CCCCC---HHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTSCSE---EEEEEEET-T
T ss_pred CCCCcC---hHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccccCE---EEEEEeCC-C
Confidence 378999 9999999999996521 1 34888884 5554444344555554445555 885 99999995 7
Q ss_pred CceEEEEEEeCCCce---EEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCCcCCCCCC
Q 047525 223 KHWYLAIMNIKDKTA---DIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNG 299 (340)
Q Consensus 223 ~HW~L~VId~~~~~I---~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~vPqQ~N~ 299 (340)
.||+|+||+.+++++ .|||||++.+.. .. .+...+. .++ +... .. +. +.++|||.||
T Consensus 74 ~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~-~~---~l~~~l~--~~l---------~~~~--~~--~~-~~~~PqQ~Ng 133 (186)
T 2oix_A 74 AHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ-QR---YLADMAA--YHL---------GLDY--QQ--TH-EMPIAIQSDG 133 (186)
T ss_dssp TEEEEEEEECSSTTSCEEEEECCCSSCCHH-HH---HHHHHHH--HHT---------TCCG--GG--CE-EECBCCCC--
T ss_pred CccEEEEEECCCCeeeeeEEEcCCCCCCHH-HH---HHHHHHH--HHh---------CCCc--cc--cc-cCCCCCCCCC
Confidence 999999999999999 999999985422 11 1222211 112 1111 11 12 2359999999
Q ss_pred CchHHHHHHHccccccc-------cCCCCC--CCCcccHHHHHHHhh
Q 047525 300 NDCGLYVMKFMETPCEL-------LFPTYK--SLPNVDWSILAVVED 337 (340)
Q Consensus 300 ~DCGVFVl~fae~~~~~-------l~~~F~--dip~iR~~i~~~~~~ 337 (340)
+|||||||+||+..+.. ....|+ +|...|..|++++++
T Consensus 134 ~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~ 180 (186)
T 2oix_A 134 YSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQ 180 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHh
Confidence 99999999999932211 112344 899999999999864
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=95.63 E-value=0.038 Score=48.97 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred EeecC----CCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCC
Q 047525 216 PLYDG----LAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPN 291 (340)
Q Consensus 216 PIN~~----~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~ 291 (340)
-||.. ||.||.-...|++.++++.+|.+|-+..+ +.+-|-..-+-+.+++. + .+.-+ --.+++...
T Consensus 42 IVNTg~retGGvHWiA~Aw~P~s~~~YmFDPfG~sd~~------L~qiY~F~Y~~llkRSA--L-~sspd-RCv~Lvkst 111 (204)
T 4ekf_A 42 IVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQR------LKQVYQFEYESLLRRSA--I-ASSPD-RCITLEKST 111 (204)
T ss_dssp EEESCC----CCCEEEEEEETTTTEEEEECTBTTCSHH------HHHHHHHHHHHHHHHHC--C----------EEEECC
T ss_pred EEecCCcccCceeEEEeEecCCcceEEEeCCCCCCHHH------HHHHhhhhHHHHHHHHh--h-cCCCC-ceeEEEecc
Confidence 36664 68999999999999999999999987532 33323211111213321 0 00000 113455555
Q ss_pred CcCCCCCCCchHHHHHHHcc
Q 047525 292 NVPIQPNGNDCGLYVMKFME 311 (340)
Q Consensus 292 ~vPqQ~N~~DCGVFVl~fae 311 (340)
..-|=+++--||+|.|.|..
T Consensus 112 qsVQcp~SaACGLFC~lFL~ 131 (204)
T 4ekf_A 112 QSVQGPNSAAAGLFCCMFLH 131 (204)
T ss_dssp SBCSCTTCCCHHHHHHHHHH
T ss_pred ccccCcCchhHHHHHHHHHH
Confidence 56677799999999999886
No 8
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=7.91 E-value=1.4e+02 Score=19.87 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=17.9
Q ss_pred HHHHHHhhhHHHHHhhcccccc
Q 047525 64 YALVQKMYSVVEALEHNITHMQ 85 (340)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~ 85 (340)
+.+++-+.+++|+||+-|..++
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE 29 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLE 29 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 5678888899999999887664
No 9
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=7.37 E-value=1.1e+02 Score=18.99 Aligned_cols=12 Identities=50% Similarity=0.891 Sum_probs=9.5
Q ss_pred CCcCCCC--CCCch
Q 047525 291 NNVPIQP--NGNDC 302 (340)
Q Consensus 291 ~~vPqQ~--N~~DC 302 (340)
.++|.-. ||+||
T Consensus 16 sncpkgkvwngfdc 29 (36)
T 1iyc_A 16 SNCPKGKVWNGFDC 29 (36)
T ss_dssp SCCCSSCEEETTEE
T ss_pred cCCCCcceecCccc
Confidence 4588776 89999
No 10
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=6.19 E-value=2.3e+02 Score=25.92 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCCCccccCchhHHHHHHHHHH
Q 047525 150 KENQIFHNVVKKIISCYAEYLT 171 (340)
Q Consensus 150 ~pg~wLNd~vD~IInfYl~~L~ 171 (340)
++|.|++ ++||+.|.++=.
T Consensus 124 ~~gTWI~---~ei~~aY~~LH~ 142 (256)
T 2cxa_A 124 EEGTWIT---RGVVEAYHRLHE 142 (256)
T ss_dssp --CTTCC---HHHHHHHHHHHH
T ss_pred CCCCCCC---HHHHHHHHHHHh
Confidence 6899999 999999999876
Done!