Query 047530
Match_columns 72
No_of_seqs 106 out of 195
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 11:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.2E-29 2.6E-34 167.2 3.4 47 26-72 1-47 (101)
2 PF04706 Dickkopf_N: Dickkopf 55.7 5.6 0.00012 23.7 0.7 16 25-40 21-36 (52)
3 COG0339 Dcp Zn-dependent oligo 51.3 7.8 0.00017 33.5 1.1 26 40-65 354-381 (683)
4 cd06457 M3A_MIP Peptidase M3 m 48.4 6.2 0.00013 31.0 0.1 25 41-65 124-150 (458)
5 PRK10280 dipeptidyl carboxypep 45.0 8.4 0.00018 32.4 0.4 24 42-65 355-381 (681)
6 PF13793 Pribosyltran_N: N-ter 44.7 3.8 8.3E-05 27.0 -1.3 39 33-72 74-113 (116)
7 PF00172 Zn_clus: Fungal Zn(2) 40.3 19 0.00042 19.3 1.3 14 26-39 2-15 (40)
8 cd06456 M3A_DCP_Oligopeptidase 39.4 11 0.00024 29.5 0.3 25 41-65 98-124 (422)
9 PRK10911 oligopeptidase A; Pro 33.4 17 0.00037 30.5 0.5 24 42-65 352-377 (680)
10 PF07945 Toxin_16: Janus-atrac 32.3 15 0.00033 20.9 0.0 10 21-30 4-13 (36)
11 PF07106 TBPIP: Tat binding pr 26.2 55 0.0012 22.2 1.9 24 48-71 16-39 (169)
12 PRK00934 ribose-phosphate pyro 25.0 19 0.00041 26.8 -0.6 43 28-71 67-111 (285)
13 PRK01259 ribose-phosphate pyro 24.6 28 0.00062 26.3 0.3 46 26-72 67-114 (309)
14 TIGR01251 ribP_PPkin ribose-ph 24.3 17 0.00038 27.2 -0.9 49 23-72 65-115 (308)
15 smart00665 B561 Cytochrome b-5 23.4 40 0.00087 21.7 0.8 19 49-67 100-118 (129)
16 PLN02369 ribose-phosphate pyro 23.2 23 0.00049 26.8 -0.4 44 28-72 60-105 (302)
17 KOG0659 Cdk activating kinase 23.0 35 0.00076 27.3 0.6 27 40-66 189-222 (318)
18 PRK02458 ribose-phosphate pyro 21.7 27 0.00058 26.8 -0.3 47 25-72 75-123 (323)
19 PF11413 HIF-1: Hypoxia-induci 21.2 23 0.0005 20.0 -0.6 13 42-56 13-25 (34)
20 PF01697 Glyco_transf_92: Glyc 20.9 35 0.00076 23.7 0.2 26 41-67 6-35 (285)
21 PF03269 DUF268: Caenorhabditi 20.5 38 0.00082 25.1 0.3 26 47-72 111-136 (177)
22 PF03770 IPK: Inositol polypho 20.4 45 0.00098 23.3 0.6 14 59-72 184-197 (197)
23 PF12532 DUF3732: Protein of u 20.3 80 0.0017 22.6 1.9 21 44-64 111-144 (193)
24 COG0295 Cdd Cytidine deaminase 20.2 55 0.0012 22.8 1.0 22 21-42 82-104 (134)
25 PRK00553 ribose-phosphate pyro 20.1 29 0.00062 26.8 -0.5 46 26-72 76-123 (332)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=99.95 E-value=1.2e-29 Score=167.18 Aligned_cols=47 Identities=68% Similarity=1.283 Sum_probs=46.1
Q ss_pred CchhhhhhhhcCCCCCccccCCCCCCchHHHHHHHhhChhhHHHhhC
Q 047530 26 PCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72 (72)
Q Consensus 26 pCAACK~lRRrC~~~C~fAPYFPa~~~~~F~~vHrvFG~sNv~KmLq 72 (72)
+|||||+|||||++||+||||||++++++|++||||||++||+||||
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~ 47 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQ 47 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHH
Confidence 69999999999999999999999999999999999999999999996
No 2
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=55.65 E-value=5.6 Score=23.72 Aligned_cols=16 Identities=38% Similarity=0.970 Sum_probs=14.7
Q ss_pred CCchhhhhhhhcCCCC
Q 047530 25 SPCAACKILRRRCVEK 40 (72)
Q Consensus 25 ~pCAACK~lRRrC~~~ 40 (72)
+.|..||-++++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 7899999999999875
No 3
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=51.27 E-value=7.8 Score=33.52 Aligned_cols=26 Identities=38% Similarity=0.737 Sum_probs=21.7
Q ss_pred CCccccCCCCCC--chHHHHHHHhhChh
Q 047530 40 KCVLAPYFPPTE--PQKFVIAHRVFGAS 65 (72)
Q Consensus 40 ~C~fAPYFPa~~--~~~F~~vHrvFG~s 65 (72)
+=.+.||||-++ ..-|+.++||||..
T Consensus 354 e~elrpYF~l~~Vl~GlF~~~~rLfGI~ 381 (683)
T COG0339 354 EEELRPYFPLNKVLEGLFEVAKRLFGIT 381 (683)
T ss_pred HHHhhhcCChhHHHHHHHHHHHHHcCeE
Confidence 345789999887 58899999999964
No 4
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=48.36 E-value=6.2 Score=31.01 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.0
Q ss_pred CccccCCCCCC--chHHHHHHHhhChh
Q 047530 41 CVLAPYFPPTE--PQKFVIAHRVFGAS 65 (72)
Q Consensus 41 C~fAPYFPa~~--~~~F~~vHrvFG~s 65 (72)
=.+.||||-+. ..-|..+++|||+.
T Consensus 124 ~~l~~YFpl~~vl~gl~~~~~~lfgi~ 150 (458)
T cd06457 124 SNLSPYFSLGTVMEGLSRLFSRLYGIR 150 (458)
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhCeE
Confidence 35899999886 47899999999975
No 5
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=45.00 E-value=8.4 Score=32.40 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=20.5
Q ss_pred ccccCCCCCCc---hHHHHHHHhhChh
Q 047530 42 VLAPYFPPTEP---QKFVIAHRVFGAS 65 (72)
Q Consensus 42 ~fAPYFPa~~~---~~F~~vHrvFG~s 65 (72)
.+.||||-+.- .-|..+++|||..
T Consensus 355 ~l~~YFpl~~Vl~~Glf~l~~~LfGi~ 381 (681)
T PRK10280 355 QLKPYFELNTVLNEGVFWTANQLFGIK 381 (681)
T ss_pred HcCCcCcHHHHHHHhHHHHHHHHcCeE
Confidence 58999999874 4799999999975
No 6
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=44.73 E-value=3.8 Score=27.03 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=23.4
Q ss_pred hhhcCCC-CCccccCCCCCCchHHHHHHHhhChhhHHHhhC
Q 047530 33 LRRRCVE-KCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72 (72)
Q Consensus 33 lRRrC~~-~C~fAPYFPa~~~~~F~~vHrvFG~sNv~KmLq 72 (72)
+|+.+.. --...||||+.+.++= .-...+.+.-+.+||+
T Consensus 74 ~r~~~a~~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~ 113 (116)
T PF13793_consen 74 LRRAGAKRITLVIPYLPYARQDRR-KPGEPISAKVVAKLLS 113 (116)
T ss_dssp HHHTTBSEEEEEESS-TTTTSSSS-STTC--HHHHHHHHHH
T ss_pred HHHcCCcEEEEeccchhhhhhccC-CCCCcchHHHHHHHHH
Confidence 3444443 3567899999976553 4566677777777763
No 7
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=40.29 E-value=19 Score=19.34 Aligned_cols=14 Identities=21% Similarity=0.755 Sum_probs=9.5
Q ss_pred CchhhhhhhhcCCC
Q 047530 26 PCAACKILRRRCVE 39 (72)
Q Consensus 26 pCAACK~lRRrC~~ 39 (72)
+|..|+..+.+|..
T Consensus 2 aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 2 ACDRCRRRKVKCDG 15 (40)
T ss_dssp SBHHHHHHTS--ST
T ss_pred cChHHHhhCcCcCC
Confidence 68888888888865
No 8
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=39.44 E-value=11 Score=29.52 Aligned_cols=25 Identities=36% Similarity=0.708 Sum_probs=20.4
Q ss_pred CccccCCCCCC--chHHHHHHHhhChh
Q 047530 41 CVLAPYFPPTE--PQKFVIAHRVFGAS 65 (72)
Q Consensus 41 C~fAPYFPa~~--~~~F~~vHrvFG~s 65 (72)
=.+.+|||-+. ..-|..+++|||..
T Consensus 98 ~~l~~YFpl~~v~~gl~~~~~~lfgi~ 124 (422)
T cd06456 98 EELRPYFPLEKVLDGLFELAERLYGIT 124 (422)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHcCee
Confidence 35889999776 36799999999985
No 9
>PRK10911 oligopeptidase A; Provisional
Probab=33.40 E-value=17 Score=30.46 Aligned_cols=24 Identities=33% Similarity=0.825 Sum_probs=20.2
Q ss_pred ccccCCCCCCc--hHHHHHHHhhChh
Q 047530 42 VLAPYFPPTEP--QKFVIAHRVFGAS 65 (72)
Q Consensus 42 ~fAPYFPa~~~--~~F~~vHrvFG~s 65 (72)
.+.||||-+.- .-|..+++|||..
T Consensus 352 ~l~~YFpl~~v~~gl~~~~~~Lfgi~ 377 (680)
T PRK10911 352 QLRPYFPENKAVNGLFEVVKRIYGIT 377 (680)
T ss_pred HhcccCcHHHHHHHHHHHHHHHcCee
Confidence 48999998763 6799999999974
No 10
>PF07945 Toxin_16: Janus-atracotoxin; InterPro: IPR012499 This family includes three peptides secreted by the spider Hadronyche versuta (Blue mountains funnel-web spider) (P82226 from SWISSPROT, P82227 from SWISSPROT, P82228 from SWISSPROT). These are insect-selective, excitatory neurotoxins that may function by antagonising muscle acetylcholine receptors, or acetylcholine receptor subtypes present in other invertebrate neurons []. Janus atracotoxin-Hv1c (J-ACTX-Hv1c, P82228 from SWISSPROT) is organised into a disulphide-rich globular core (residues 3-19) and a beta-hairpin (residues 20-34). There are 4 disulphide bridges, one of which is a vicinal disulphide bridge; this is known to be unimportant in the maintenance of structure but critical for insecticidal activity []. ; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1DL0_A.
Probab=32.30 E-value=15 Score=20.86 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=4.8
Q ss_pred CCCCCCchhh
Q 047530 21 PVVLSPCAAC 30 (72)
Q Consensus 21 ~~~~~pCAAC 30 (72)
++..+|||||
T Consensus 4 tgadrpcaac 13 (36)
T PF07945_consen 4 TGADRPCAAC 13 (36)
T ss_dssp --TTSB--SS
T ss_pred cCCCCCcccc
Confidence 4667888887
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.24 E-value=55 Score=22.17 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=20.6
Q ss_pred CCCCchHHHHHHHhhChhhHHHhh
Q 047530 48 PPTEPQKFVIAHRVFGASNIIKFL 71 (72)
Q Consensus 48 Pa~~~~~F~~vHrvFG~sNv~KmL 71 (72)
|.+-..-|.|.|.-||-..|+|.|
T Consensus 16 Pys~~di~~nL~~~~~K~~v~k~L 39 (169)
T PF07106_consen 16 PYSAQDIFDNLHNKVGKTAVQKAL 39 (169)
T ss_pred CCcHHHHHHHHHhhccHHHHHHHH
Confidence 455567899999999999999987
No 12
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.98 E-value=19 Score=26.76 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=25.6
Q ss_pred hhhhhhhhcCCC-CCccccCCCCCCc-hHHHHHHHhhChhhHHHhh
Q 047530 28 AACKILRRRCVE-KCVLAPYFPPTEP-QKFVIAHRVFGASNIIKFL 71 (72)
Q Consensus 28 AACK~lRRrC~~-~C~fAPYFPa~~~-~~F~~vHrvFG~sNv~KmL 71 (72)
-....+||--.. -....||||+.+. .+|. -...+.+.-+.+||
T Consensus 67 ~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~-~ge~isak~~a~ll 111 (285)
T PRK00934 67 LLIDALRDEGAKSITLVIPYLGYARQDKRFK-PGEPISARAIAKII 111 (285)
T ss_pred HHHHHHHHcCCCeEEEEecCCcccccccccC-CCCCccHHHHHHHH
Confidence 334444554443 3478999999864 3343 23456666676666
No 13
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.57 E-value=28 Score=26.29 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=28.9
Q ss_pred CchhhhhhhhcCCC-CCccccCCCCCCc-hHHHHHHHhhChhhHHHhhC
Q 047530 26 PCAACKILRRRCVE-KCVLAPYFPPTEP-QKFVIAHRVFGASNIIKFLQ 72 (72)
Q Consensus 26 pCAACK~lRRrC~~-~C~fAPYFPa~~~-~~F~~vHrvFG~sNv~KmLq 72 (72)
-.-....+|+--.. --...||||+.+. .+|. -...+.+.-+.+||+
T Consensus 67 Lll~~~alr~~ga~~i~lViPYl~YsRQDr~~~-~ge~isak~~a~lL~ 114 (309)
T PRK01259 67 LLIMIDALKRASAGRITAVIPYFGYARQDRKAR-SRVPITAKLVANLLE 114 (309)
T ss_pred HHHHHHHHHHcCCceEEEEeeccccchhhhhhc-cCCCchHHHHHHHHh
Confidence 34444555565554 3578999999875 4444 445666677777763
No 14
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=24.34 E-value=17 Score=27.18 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCCCchhhhhhhhcCCCC-CccccCCCCCCc-hHHHHHHHhhChhhHHHhhC
Q 047530 23 VLSPCAACKILRRRCVEK-CVLAPYFPPTEP-QKFVIAHRVFGASNIIKFLQ 72 (72)
Q Consensus 23 ~~~pCAACK~lRRrC~~~-C~fAPYFPa~~~-~~F~~vHrvFG~sNv~KmLq 72 (72)
...-+-.+..+|+-.... ....||||+.+. .+|. -...+.+.-+.+||+
T Consensus 65 l~el~~~~~a~r~~ga~~i~~v~PYl~Y~RqDr~~~-~ge~is~~~~a~ll~ 115 (308)
T TIGR01251 65 LMELLIMIDALKRASAKSITAVIPYYGYARQDKKFK-SREPISAKLVANLLE 115 (308)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecccchhccccC-CCCCchHHHHHHHHH
Confidence 344455566666666653 578999999874 4444 344667777777763
No 15
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=23.43 E-value=40 Score=21.65 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=14.6
Q ss_pred CCCchHHHHHHHhhChhhH
Q 047530 49 PTEPQKFVIAHRVFGASNI 67 (72)
Q Consensus 49 a~~~~~F~~vHrvFG~sNv 67 (72)
.+....+.-+|+++|..-+
T Consensus 100 ~~~r~~~~~~H~~~G~~~~ 118 (129)
T smart00665 100 SKYRSYLNPYHRFVGLAAF 118 (129)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4456788889999997654
No 16
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=23.18 E-value=23 Score=26.80 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=28.1
Q ss_pred hhhhhhhhcCCC-CCccccCCCCCCch-HHHHHHHhhChhhHHHhhC
Q 047530 28 AACKILRRRCVE-KCVLAPYFPPTEPQ-KFVIAHRVFGASNIIKFLQ 72 (72)
Q Consensus 28 AACK~lRRrC~~-~C~fAPYFPa~~~~-~F~~vHrvFG~sNv~KmLq 72 (72)
-....+||-... -....||||+.+.+ +|. -...+.+.-+.+||+
T Consensus 60 ~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~-~~e~isak~va~lL~ 105 (302)
T PLN02369 60 IMIDACRRASAKRITAVIPYFGYARADRKTQ-GRESIAAKLVANLIT 105 (302)
T ss_pred HHHHHHHHcCCCeEEEEeecccccccccccC-CCCCchHHHHHHHHH
Confidence 334444555544 37889999998744 443 445677777777773
No 17
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=23.03 E-value=35 Score=27.32 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=20.8
Q ss_pred CCccc------cCCCCCC-chHHHHHHHhhChhh
Q 047530 40 KCVLA------PYFPPTE-PQKFVIAHRVFGASN 66 (72)
Q Consensus 40 ~C~fA------PYFPa~~-~~~F~~vHrvFG~sN 66 (72)
+|+|| ||||.+. -++...+-+.+|..+
T Consensus 189 GCI~AELllr~P~fpG~sDidQL~~If~~LGTP~ 222 (318)
T KOG0659|consen 189 GCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPT 222 (318)
T ss_pred HHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCC
Confidence 46665 9999874 688888888888765
No 18
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.75 E-value=27 Score=26.76 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCchhhhhhhhcCCC-CCccccCCCCCCchH-HHHHHHhhChhhHHHhhC
Q 047530 25 SPCAACKILRRRCVE-KCVLAPYFPPTEPQK-FVIAHRVFGASNIIKFLQ 72 (72)
Q Consensus 25 ~pCAACK~lRRrC~~-~C~fAPYFPa~~~~~-F~~vHrvFG~sNv~KmLq 72 (72)
.-.-..-.+||-... -....||||+.+.++ |. --..+.+.-+.+||+
T Consensus 75 eLll~~~alr~~~a~~i~lViPYl~YaRQDr~~~-~ge~isak~~a~lL~ 123 (323)
T PRK02458 75 ELLIMIDACKRASANTVNVVLPYFGYARQDRIAK-PREPITAKLVANMLV 123 (323)
T ss_pred HHHHHHHHHHHcCCceEEEEEeccccchhhcccC-CCCCchHHHHHHHHh
Confidence 334444555666665 357899999987544 43 333666777777763
No 19
>PF11413 HIF-1: Hypoxia-inducible factor-1; InterPro: IPR021537 Hypoxia-inducible factors (HIFs) are transcription factors that respond to changes in available oxygen in the cellular environment. Specifically, they respond to decreases in oxygen, mediating the effects of hypoxia []. HIFs are heterodimers, composed of an alpha and a beta subunit. At least 3 different alpha subunits are known to exist, termed HIF-1, -2 and -3 alpha. Beta subunits, meanwhile, are constitutively-expressed aryl hydrocarbon receptor nuclear translocators (ARNTs). In addition to their role in hypoxia, HIFs have been shown to be involved in a range of processes, including angiogenesis, metal transport, mitochondrial function and cell growth []. This entry represents HIF alpha subunits.; PDB: 3HQU_S 1LQB_D 1LM8_H 3HQR_S.
Probab=21.17 E-value=23 Score=20.02 Aligned_cols=13 Identities=46% Similarity=0.935 Sum_probs=6.8
Q ss_pred ccccCCCCCCchHHH
Q 047530 42 VLAPYFPPTEPQKFV 56 (72)
Q Consensus 42 ~fAPYFPa~~~~~F~ 56 (72)
++|||-|-+ ++|+
T Consensus 13 mLAPYIpMd--dDFq 25 (34)
T PF11413_consen 13 MLAPYIPMD--DDFQ 25 (34)
T ss_dssp GTSBB--SS----EE
T ss_pred HhcCccccC--ccce
Confidence 589999977 5553
No 20
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=20.90 E-value=35 Score=23.69 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=19.1
Q ss_pred CccccCCCCC----CchHHHHHHHhhChhhH
Q 047530 41 CVLAPYFPPT----EPQKFVIAHRVFGASNI 67 (72)
Q Consensus 41 C~fAPYFPa~----~~~~F~~vHrvFG~sNv 67 (72)
|+ +|.|=.+ +-..|...|++.|++.+
T Consensus 6 Cv-~pl~~~~~~~~~l~e~ie~~~~~G~~~~ 35 (285)
T PF01697_consen 6 CV-SPLFGNEDDWLQLIEWIEYHRLLGVDHF 35 (285)
T ss_pred Ec-cchhcccccHHHHHHHHHHHHHhCCCEE
Confidence 44 4555544 57899999999998754
No 21
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=20.52 E-value=38 Score=25.09 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=19.4
Q ss_pred CCCCCchHHHHHHHhhChhhHHHhhC
Q 047530 47 FPPTEPQKFVIAHRVFGASNIIKFLQ 72 (72)
Q Consensus 47 FPa~~~~~F~~vHrvFG~sNv~KmLq 72 (72)
+|-..+.---|+||+||--.+..|++
T Consensus 111 vPvG~d~i~fNahRiYg~~rL~mm~~ 136 (177)
T PF03269_consen 111 VPVGTDAIQFNAHRIYGPIRLAMMFY 136 (177)
T ss_pred eecCCcceEEecceeecHhHHHHHhC
Confidence 45555555558999999999888874
No 22
>PF03770 IPK: Inositol polyphosphate kinase ; InterPro: IPR005522 ArgRIII has been demonstrated to be an inositol polyphosphate kinase [] which catalyses the reaction ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate .; GO: 0008440 inositol trisphosphate 3-kinase activity; PDB: 2IF8_B 2IEW_B 1W2C_A 1W2F_A 1W2D_A 2A98_A 2AQX_A 1TZD_A.
Probab=20.41 E-value=45 Score=23.32 Aligned_cols=14 Identities=36% Similarity=0.664 Sum_probs=11.5
Q ss_pred HHhhChhhHHHhhC
Q 047530 59 HRVFGASNIIKFLQ 72 (72)
Q Consensus 59 HrvFG~sNv~KmLq 72 (72)
.=+||..|++++||
T Consensus 184 g~l~GL~nLi~~le 197 (197)
T PF03770_consen 184 GFLFGLNNLISILE 197 (197)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHhC
Confidence 55899999999986
No 23
>PF12532 DUF3732: Protein of unknown function (DUF3732); InterPro: IPR022205 This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
Probab=20.35 E-value=80 Score=22.56 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=16.0
Q ss_pred ccCCCC-------------CCchHHHHHHHhhCh
Q 047530 44 APYFPP-------------TEPQKFVIAHRVFGA 64 (72)
Q Consensus 44 APYFPa-------------~~~~~F~~vHrvFG~ 64 (72)
.||||. +..++.+.|.++|..
T Consensus 111 QvYfp~~~~~~~~~~~~~~~~d~D~~aV~~~F~~ 144 (193)
T PF12532_consen 111 QVYFPSRDKSEDFDEEELRERDEDIAAVRKMFSL 144 (193)
T ss_pred cCcCCCcccccccchhhccccchHHHHHHHHHHH
Confidence 689998 234788889888864
No 24
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=20.20 E-value=55 Score=22.83 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=14.8
Q ss_pred CCCCCCchhhhhh-hhcCCCCCc
Q 047530 21 PVVLSPCAACKIL-RRRCVEKCV 42 (72)
Q Consensus 21 ~~~~~pCAACK~l-RRrC~~~C~ 42 (72)
....+||++||.. ..=|.++..
T Consensus 82 ~~~~sPCG~CRQ~i~Ef~~~d~~ 104 (134)
T COG0295 82 GKPVSPCGACRQVLAEFCGDDTL 104 (134)
T ss_pred CCCcCCcHHHHHHHHHhcCCCce
Confidence 3457899999965 555655543
No 25
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.06 E-value=29 Score=26.76 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=28.7
Q ss_pred CchhhhhhhhcCCCC-CccccCCCCCCchH-HHHHHHhhChhhHHHhhC
Q 047530 26 PCAACKILRRRCVEK-CVLAPYFPPTEPQK-FVIAHRVFGASNIIKFLQ 72 (72)
Q Consensus 26 pCAACK~lRRrC~~~-C~fAPYFPa~~~~~-F~~vHrvFG~sNv~KmLq 72 (72)
-.-....+||--... -...||||+.+.++ |. -....++.-+.+||+
T Consensus 76 Lll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~-~~e~isak~vA~ll~ 123 (332)
T PRK00553 76 LLIAIDALKRGSAKSITAILPYYGYARQDRKTA-GREPITSKLVADLLT 123 (332)
T ss_pred HHHHHHHHHHcCCCeEEEEeeccccchhhcccC-CCCCccHHHHHHHHH
Confidence 344445556665543 46899999987544 43 344666777777763
Done!