Query 047530
Match_columns 72
No_of_seqs 106 out of 195
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 21:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dl0_A J-atracotoxin-HV1C; neu 34.9 9.1 0.00031 21.1 0.2 10 21-30 4-13 (37)
2 2p9x_A Hypothetical protein PH 31.3 15 0.00053 24.0 0.9 15 50-64 44-59 (99)
3 1x64_A Alpha-actinin-2 associa 30.4 49 0.0017 18.8 3.0 12 21-32 22-33 (89)
4 1lqb_D HIF-1 alpha, hypoxia-in 25.3 16 0.00055 19.9 0.1 13 42-56 13-25 (34)
5 1tuz_A Diacylglycerol kinase a 25.3 24 0.00081 22.7 1.0 31 34-64 40-80 (118)
6 1d66_A Protein (GAL4); protein 23.3 44 0.0015 17.8 1.7 17 23-39 7-23 (66)
7 1pyi_A Protein (pyrimidine pat 22.9 45 0.0015 19.2 1.8 16 24-39 4-19 (96)
8 2o3e_A Neurolysin; thermolysin 22.1 16 0.00056 28.7 -0.3 24 42-65 356-381 (678)
9 1lrv_A LRV, leucine-rich repea 21.1 31 0.0011 24.0 1.0 31 25-57 12-49 (244)
10 1x4w_A Hypothetical protein FL 20.4 44 0.0015 20.1 1.4 12 20-31 11-22 (67)
No 1
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=34.89 E-value=9.1 Score=21.12 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.2
Q ss_pred CCCCCCchhh
Q 047530 21 PVVLSPCAAC 30 (72)
Q Consensus 21 ~~~~~pCAAC 30 (72)
++..+|||||
T Consensus 4 tgadrpcaac 13 (37)
T 1dl0_A 4 TGADRPCAAC 13 (37)
T ss_dssp CCTTSBCCSS
T ss_pred ccCCCccccc
Confidence 5778899988
No 2
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=31.35 E-value=15 Score=24.02 Aligned_cols=15 Identities=40% Similarity=0.855 Sum_probs=12.0
Q ss_pred CCchHH-HHHHHhhCh
Q 047530 50 TEPQKF-VIAHRVFGA 64 (72)
Q Consensus 50 ~~~~~F-~~vHrvFG~ 64 (72)
++|++| +.|.++||-
T Consensus 44 eDP~kFkeaV~~LFGE 59 (99)
T 2p9x_A 44 DDPQKFKEAVSKLFGE 59 (99)
T ss_dssp HCHHHHHHHHHHHHCH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 578888 468999994
No 3
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.38 E-value=49 Score=18.79 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=8.3
Q ss_pred CCCCCCchhhhh
Q 047530 21 PVVLSPCAACKI 32 (72)
Q Consensus 21 ~~~~~pCAACK~ 32 (72)
......|+.|..
T Consensus 22 ~~~~~~C~~C~~ 33 (89)
T 1x64_A 22 AQRMPLCDKCGS 33 (89)
T ss_dssp CCSCCBCTTTCC
T ss_pred CCcCCCcccCCC
Confidence 344567999974
No 4
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=25.31 E-value=16 Score=19.88 Aligned_cols=13 Identities=46% Similarity=0.935 Sum_probs=9.9
Q ss_pred ccccCCCCCCchHHH
Q 047530 42 VLAPYFPPTEPQKFV 56 (72)
Q Consensus 42 ~fAPYFPa~~~~~F~ 56 (72)
++|||-|-| ++|+
T Consensus 13 mLAPYIpMd--dDFq 25 (34)
T 1lqb_D 13 MLAPYIPMD--DDFQ 25 (34)
T ss_pred HhcCccccC--cccc
Confidence 589999976 5554
No 5
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=25.28 E-value=24 Score=22.70 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=23.3
Q ss_pred hhcCCCCC--------ccccCCCCC-CchHHHH-HHHhhCh
Q 047530 34 RRRCVEKC--------VLAPYFPPT-EPQKFVI-AHRVFGA 64 (72)
Q Consensus 34 RRrC~~~C--------~fAPYFPa~-~~~~F~~-vHrvFG~ 64 (72)
.+.|+.+. ++.-|||.+ .+..|.. |-++|-.
T Consensus 40 ~k~cp~G~i~~e~F~~i~~~ffp~~~~p~~~~~~lF~~Fd~ 80 (118)
T 1tuz_A 40 AKYVQGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSFET 80 (118)
T ss_dssp GGGEETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHSCC
T ss_pred cccCCCCCCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhc
Confidence 46677776 588999997 8999976 6666653
No 6
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=23.33 E-value=44 Score=17.76 Aligned_cols=17 Identities=18% Similarity=0.804 Sum_probs=10.2
Q ss_pred CCCCchhhhhhhhcCCC
Q 047530 23 VLSPCAACKILRRRCVE 39 (72)
Q Consensus 23 ~~~pCAACK~lRRrC~~ 39 (72)
+..+|..|+...-+|..
T Consensus 7 ~~~aC~~Cr~rK~kCd~ 23 (66)
T 1d66_A 7 IEQACDICRLKKLKCSK 23 (66)
T ss_dssp -CCCCHHHHHHTCCCCC
T ss_pred CCchHHHHHhCcCcCCC
Confidence 34567777766666643
No 7
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.92 E-value=45 Score=19.16 Aligned_cols=16 Identities=19% Similarity=0.798 Sum_probs=10.2
Q ss_pred CCCchhhhhhhhcCCC
Q 047530 24 LSPCAACKILRRRCVE 39 (72)
Q Consensus 24 ~~pCAACK~lRRrC~~ 39 (72)
..+|..|+..+-||..
T Consensus 4 ~~aC~~Cr~rK~kCd~ 19 (96)
T 1pyi_A 4 RTACKRCRLKKIKCDQ 19 (96)
T ss_dssp CCCCHHHHHHTCCCCC
T ss_pred cchhHHHhccCcCcCC
Confidence 3567777777666643
No 8
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Probab=22.07 E-value=16 Score=28.68 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=18.4
Q ss_pred ccccCCCCCC--chHHHHHHHhhChh
Q 047530 42 VLAPYFPPTE--PQKFVIAHRVFGAS 65 (72)
Q Consensus 42 ~fAPYFPa~~--~~~F~~vHrvFG~s 65 (72)
.+.||||-++ ..-|..++++||..
T Consensus 356 ~l~~YF~l~~v~~gv~~~~~~lfG~~ 381 (678)
T 2o3e_A 356 SLKEYFPIEVVTEGLLSIYQELLGLS 381 (678)
T ss_dssp HHGGGCBHHHHHHHHHHHHHHHHTEE
T ss_pred HhcccCcHHHHHHHHHHHHHHHcCCe
Confidence 4789999664 45678888999964
No 9
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=21.12 E-value=31 Score=24.03 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=22.7
Q ss_pred CCchhhhhhh-----hcCCCC--CccccCCCCCCchHHHH
Q 047530 25 SPCAACKILR-----RRCVEK--CVLAPYFPPTEPQKFVI 57 (72)
Q Consensus 25 ~pCAACK~lR-----RrC~~~--C~fAPYFPa~~~~~F~~ 57 (72)
-.|+.|.|+- .+|.++ |+..+|=+ +-.+|.+
T Consensus 12 ~~c~~c~~~~~~~~~~~c~~~~~c~~~~~~~--ri~~~~~ 49 (244)
T 1lrv_A 12 GDCRVCSFRMSLLLTGRCTPGDACVAVESGR--QIDRFFR 49 (244)
T ss_dssp CCTTTSTTTTTTGGGTSSBTTTBCSSSSCHH--HHHHHHH
T ss_pred ccccCCCCcccchhcCCCCCCchHhhcCcHH--HHHHHHc
Confidence 4599999998 799764 99988743 4455543
No 10
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.42 E-value=44 Score=20.09 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=8.9
Q ss_pred CCCCCCCchhhh
Q 047530 20 PPVVLSPCAACK 31 (72)
Q Consensus 20 ~~~~~~pCAACK 31 (72)
+......|..|+
T Consensus 11 ~~~~~~rC~~C~ 22 (67)
T 1x4w_A 11 KQKSRRRCFQCQ 22 (67)
T ss_dssp SCSCTTBCSSSC
T ss_pred CCccCCcchhhC
Confidence 455567899997
Done!