BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047535
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 43/170 (25%)
Query: 34 PLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSC 93
PL+ +VD G +WV C Q Y SS+Y+ + C++ QC L +++C
Sbjct: 31 PLVSENLVVDLGGRFLWVDC---DQNYV----------SSTYRPVRCRTSQCSLSGSIAC 77
Query: 94 SS-----QQLCN------YTYGYADSSLTKGVLATERI----TFGNSNNFFDNV---VFG 135
+ CN + ++ T G +A + + T G+S+ V +F
Sbjct: 78 GDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFS 137
Query: 136 CGHNN------TGVFNENEMGLVGLGRTRLSLASQILSQLG-ANKFSYCL 178
C + +GV +G+ GLGRTR++L SQ S KF+ CL
Sbjct: 138 CAPTSLLQNLASGV-----VGMAGLGRTRIALPSQFASAFSFKRKFAMCL 182
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 43/170 (25%)
Query: 34 PLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSC 93
PL+ +VD G +WV C Q Y SS+Y+ + C++ QC L +++C
Sbjct: 31 PLVSENLVVDLGGRFLWVDC---DQNYV----------SSTYRPVRCRTSQCSLSGSIAC 77
Query: 94 SS-----QQLCN------YTYGYADSSLTKGVLATERI----TFGNSNNFFDNV---VFG 135
+ CN + ++ T G +A + + T G+S+ V +F
Sbjct: 78 GDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFS 137
Query: 136 CGHNN------TGVFNENEMGLVGLGRTRLSLASQILSQLG-ANKFSYCL 178
C + +GV +G+ GLGRTR++L SQ S KF+ CL
Sbjct: 138 CAPTSLLQNLASGV-----VGMAGLGRTRIALPSQFASAFSFKRKFAMCL 182
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQV-KPIYNPASSSSYKE 77
EY + SIGTP D Y + DTGS WV C V K ++P+SSS++KE
Sbjct: 19 EYAIPVSIGTPGQ-DFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKE 73
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 92/245 (37%), Gaps = 42/245 (17%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I+DTGS +WV + C K +Y+ + S +Y++ + E ++ TVS
Sbjct: 34 ILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVS-------- 85
Query: 101 YTYGYADSSLTKGVLATERITFGNSN--NFFDNVVFGCGHNNTGVFNENEMGLVGLGRTR 158
G + + +T GN + F V+ G T + + G++GLG
Sbjct: 86 ------------GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD-GILGLGWKD 132
Query: 159 LSLASQ---ILSQLGANKFSYCLVPFHTDSSITSKMYFXXXXXXXXXXXXXXXXXXKEDK 215
LS+ S ++ NK L F+ +
Sbjct: 133 LSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHD 192
Query: 216 TYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVR 275
Y+ +TL+ VGN+S + K N +D+G +P DF N++ + +
Sbjct: 193 LYWQITLDA-HVGNIS--------------LEKANCIVDSGTSAITVPTDFLNKMLQNL- 236
Query: 276 NAIKL 280
+ IK+
Sbjct: 237 DVIKV 241
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 92/245 (37%), Gaps = 42/245 (17%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I+DTGS +WV + C K +Y+ + S +Y++ + E ++ TVS
Sbjct: 32 ILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVS-------- 83
Query: 101 YTYGYADSSLTKGVLATERITFGNSN--NFFDNVVFGCGHNNTGVFNENEMGLVGLGRTR 158
G + + +T GN + F V+ G T + + G++GLG
Sbjct: 84 ------------GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD-GILGLGWKD 130
Query: 159 LSLASQ---ILSQLGANKFSYCLVPFHTDSSITSKMYFXXXXXXXXXXXXXXXXXXKEDK 215
LS+ S ++ NK L F+ +
Sbjct: 131 LSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHD 190
Query: 216 TYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVR 275
Y+ +TL+ VGN+S + K N +D+G +P DF N++ + +
Sbjct: 191 LYWQITLDA-HVGNIS--------------LEKANCIVDSGTSAITVPTDFLNKMLQNL- 234
Query: 276 NAIKL 280
+ IK+
Sbjct: 235 DVIKV 239
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 24 YVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYK-QVKPIYNPASSSSYKE 77
Y + IGTPP I DTGS ++WV C+ + +Y + SS+YKE
Sbjct: 15 YFGEIGIGTPPQ-KFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKE 68
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 42/245 (17%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I+DTGS +WV + C K +Y+ + S +Y++ + E ++ TVS
Sbjct: 34 ILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVS-------- 85
Query: 101 YTYGYADSSLTKGVLATERITFGNSN--NFFDNVVFGCGHNNTGVFNENEMGLVGLGRTR 158
G + + +T GN + F V+ G T + + G++GLG
Sbjct: 86 ------------GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD-GILGLGWKD 132
Query: 159 LSLASQ---ILSQLGANKFSYCLVPFHTDSSITSKMYFXXXXXXXXXXXXXXXXXXKEDK 215
LS+ S ++ NK L F+ +
Sbjct: 133 LSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHD 192
Query: 216 TYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVR 275
Y+ +TL+ VGN+ + K N +D+G +P DF N++ + +
Sbjct: 193 LYWQITLDA-HVGNI--------------MLEKANCIVDSGTSAITVPTDFLNKMLQNL- 236
Query: 276 NAIKL 280
+ IK+
Sbjct: 237 DVIKV 241
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 42/245 (17%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I+DTGS +WV + C K +Y+ + S +Y++ + E ++ TVS
Sbjct: 32 ILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVS-------- 83
Query: 101 YTYGYADSSLTKGVLATERITFGNSN--NFFDNVVFGCGHNNTGVFNENEMGLVGLGRTR 158
G + + +T GN + F V+ G T + + G++GLG
Sbjct: 84 ------------GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD-GILGLGWKD 130
Query: 159 LSLASQ---ILSQLGANKFSYCLVPFHTDSSITSKMYFXXXXXXXXXXXXXXXXXXKEDK 215
LS+ S ++ NK L F+ +
Sbjct: 131 LSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHD 190
Query: 216 TYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVR 275
Y+ +TL+ VGN+ + K N +D+G +P DF N++ + +
Sbjct: 191 LYWQITLDA-HVGNI--------------MLEKANCIVDSGTSAITVPTDFLNKMLQNL- 234
Query: 276 NAIKL 280
+ IK+
Sbjct: 235 DVIKV 239
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3
Mutant, Mvv
Length = 329
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 21 NGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPC--VQCYKQVKPIYNPASSSSYK 76
N +Y ++GTPP + I+DTGS +WV C + C+ K Y+ +SSSYK
Sbjct: 12 NAQYYTDITLGTPPQ-NFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK 66
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3
Mutant Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 21 NGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPC--VQCYKQVKPIYNPASSSSYK 76
N +Y ++GTPP + I+DTGS +WV C + C+ K Y+ +SSSYK
Sbjct: 12 NAQYYTDITLGTPPQ-NFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK 66
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 21 NGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPC--VQCYKQVKPIYNPASSSSYK 76
N +Y ++GTPP + I+DTGS +WV C + C+ K Y+ +SSSYK
Sbjct: 12 NAQYYTDITLGTPPQ-NFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK 66
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 27/104 (25%)
Query: 24 YVMKFSIGTPPLLDIYGIVDTGSDLMWV-----QCLPCVQCYKQVKPIYNPASSSSYKEL 78
Y K S+G+ I+DTGS WV QC V C + + P+SSSSYK L
Sbjct: 14 YASKVSVGSNKQQQTV-IIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNL 70
Query: 79 SCQSEQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITF 122
+T Y D S ++G + +T
Sbjct: 71 GAA-------------------FTIRYGDGSTSQGTWGKDTVTI 95
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 29/105 (27%)
Query: 23 EYVMKFSIGTPPL---LDIYGIVDTGSDLMWVQCLPCVQC-YKQVKPIYNPASSSSYKEL 78
EY + +IGTP LD DTGS +W+ C C +Q K Y+P SS+Y+
Sbjct: 16 EYYGQVTIGTPGKKFNLDF----DTGSSDLWIASTLCTNCGSRQTK--YDPNQSSTYQA- 68
Query: 79 SCQSEQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFG 123
++ Y D S G+LA + + G
Sbjct: 69 ------------------DGRTWSISYGDGSSASGILAKDNVNLG 95
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 87/239 (36%), Gaps = 41/239 (17%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I+DTGS +WV + C K +Y+ + S +Y++ + E ++ TVS
Sbjct: 83 ILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVS-------- 134
Query: 101 YTYGYADSSLTKGVLATERITFGNSN--NFFDNVVFGCGHNNTGVFNENEMGLVGLGRTR 158
G + + +T GN + F V+ G T + + G++GLG
Sbjct: 135 ------------GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD-GILGLGWKD 181
Query: 159 LSLASQ---ILSQLGANKFSYCLVPFHTDSSITSKMYFXXXXXXXXXXXXXXXXXXKEDK 215
LS+ S ++ NK L F+ +
Sbjct: 182 LSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHD 241
Query: 216 TYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQV 274
Y+ +TL+ VGN+ + K N +D+G +P DF N++ + +
Sbjct: 242 LYWQITLDA-HVGNI--------------MLEKANCIVDSGTSAITVPTDFLNKMLQNL 285
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 21 NGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQV---KPIYNPASSSSY-- 75
+ Y + SIGTPP + + DTGS +WV P V C Q +NP+ SS+Y
Sbjct: 11 DAAYFGEISIGTPPQ-NFLVLFDTGSSNLWV---PSVYCQSQACTSHSRFNPSESSTYST 66
Query: 76 --KELSCQSEQCHL-----LDTVSCSSQQLCNYTYGYAD 107
+ S Q L DT++ S Q+ N +G ++
Sbjct: 67 NGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSE 105
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 21 NGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPC---VQCYKQVKPIYNPASSSSYKE 77
N +Y + +GTPP I DTGS +WV C + CY + Y +SS+YK+
Sbjct: 51 NAQYFGEIGVGTPPQ-KFTVIFDTGSSNLWVPSAKCYFSIACYLHSR--YKAGASSTYKK 107
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 87/239 (36%), Gaps = 41/239 (17%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I+DTGS +WV + C K +Y+ + S +Y++ + E ++ TVS
Sbjct: 156 ILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVS-------- 207
Query: 101 YTYGYADSSLTKGVLATERITFGNSN--NFFDNVVFGCGHNNTGVFNENEMGLVGLGRTR 158
G + + +T GN + F V+ G T + + G++GLG
Sbjct: 208 ------------GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD-GILGLGWKD 254
Query: 159 LSLASQ---ILSQLGANKFSYCLVPFHTDSSITSKMYFXXXXXXXXXXXXXXXXXXKEDK 215
LS+ S ++ NK L F+ +
Sbjct: 255 LSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHD 314
Query: 216 TYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQV 274
Y+ +TL+ VGN+ + K N +D+G +P DF N++ + +
Sbjct: 315 LYWQITLDA-HVGNI--------------MLEKANCIVDSGTSAITVPTDFLNKMLQNL 358
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKE 77
EY SIG+PP + I DTGS +WV + C + + P+ SS+Y +
Sbjct: 24 EYFGTISIGSPPQ-NFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQ 77
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 29/105 (27%)
Query: 23 EYVMKFSIGTPPL---LDIYGIVDTGSDLMWVQCLPCVQC-YKQVKPIYNPASSSSYKEL 78
EY + +IGTP LD DTGS +W+ C C Q K Y+P SS+Y+
Sbjct: 16 EYYGQVTIGTPGKKFNLDF----DTGSSDLWIASTLCTNCGSGQTK--YDPNQSSTYQA- 68
Query: 79 SCQSEQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFG 123
++ Y D S G+LA + + G
Sbjct: 69 ------------------DGRTWSISYGDGSSASGILAKDNVNLG 95
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 18 STANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKE 77
S + +Y K IGTPP + + DTGS +WV + C + ++P SS+++
Sbjct: 7 SYLDSQYFGKIYIGTPPQ-EFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRN 65
Query: 78 L 78
L
Sbjct: 66 L 66
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQS 82
EY IGTP D + DTGS +WV + C +NP SS+Y+ S
Sbjct: 13 EYFGTIGIGTPAQ-DFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQSTS--- 68
Query: 83 EQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG 142
+TVS + Y S+T G+L + + G ++ N +FG G
Sbjct: 69 ------ETVSIT----------YGTGSMT-GILGYDTVQVGGISD--TNQIFGLSETEPG 109
Query: 143 VF 144
F
Sbjct: 110 SF 111
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQS 82
EY IGTP D + DTGS +WV + C +NP SS+Y+ S
Sbjct: 13 EYFGTIGIGTPAQ-DFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQSTS--- 68
Query: 83 EQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG 142
+TVS + Y S+T G+L + + G ++ N +FG G
Sbjct: 69 ------ETVSIT----------YGTGSMT-GILGYDTVQVGGISD--TNQIFGLSETEPG 109
Query: 143 VF 144
F
Sbjct: 110 SF 111
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 40/175 (22%)
Query: 34 PLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSC 93
PL+ + +VD + +WV C Q Y SS +Y+ C S QC +T C
Sbjct: 32 PLMQVPVLVDLNGNHLWVNC---EQQY----------SSKTYQAPFCHSTQCSRANTHQC 78
Query: 94 -----SSQQLCN-----------YTYGYADSSLTKGVLATERITFGNSNNF-----FDNV 132
+S+ C+ T L + VLA T G++
Sbjct: 79 LSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIH-ATQGSTQQLGPLVTVPQF 137
Query: 133 VFGCGHN---NTGVFNENEMGLVGLGRTRLSLASQILSQLGANK-FSYCLVPFHT 183
+F C + G+ N G+ GLG +SL +Q+ S G + F+ CL + T
Sbjct: 138 LFSCAPSFLVQKGL-PRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPT 191
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQS 82
EY IGTP D I DTGS +WV + C +NP SS+++
Sbjct: 57 EYFGTIGIGTPAQ-DFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------ 109
Query: 83 EQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG 142
+SQ+L + TYG S+T G+L + + G ++ N +FG G
Sbjct: 110 ----------ATSQEL-SITYGTG--SMT-GILGYDTVQVGGISD--TNQIFGLSETEPG 153
Query: 143 VF 144
F
Sbjct: 154 SF 155
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 23 EYVMKFSIGTPPLLDIYGIV-DTGSDLMWVQCLPCVQCYKQV--KPIYNPASSSSYKE 77
+Y + IGTPP + +V DTGS +WV C + Y +++ + SSSYK
Sbjct: 19 QYYGEIGIGTPP--QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 74
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 23 EYVMKFSIGTPPLLDIYGIV-DTGSDLMWVQCLPCVQCYKQ--VKPIYNPASSSSYKE 77
+Y + IGTPP + +V DTGS +WV C + Y +++ + SSSYK
Sbjct: 19 QYYGEIGIGTPP--QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 74
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 23 EYVMKFSIGTPPLLDIYGIV-DTGSDLMWVQCLPCVQCYKQV--KPIYNPASSSSYKE 77
+Y + IGTPP + +V DTGS +WV C + Y +++ + SSSYK
Sbjct: 19 QYYGEIGIGTPP--QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 74
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQS 82
EY IGTP D I DTGS +WV + C +NP SS+++
Sbjct: 13 EYFGTIGIGTPAQ-DFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------ 65
Query: 83 EQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG 142
+SQ+L + TYG S+T G+L + + G ++ N +FG G
Sbjct: 66 ----------ATSQEL-SITYGTG--SMT-GILGYDTVQVGGISD--TNQIFGLSETEPG 109
Query: 143 VF 144
F
Sbjct: 110 SF 111
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 23 EYVMKFSIGTPPLLDIYGIV-DTGSDLMWVQCLPCVQCYKQV--KPIYNPASSSSYKE 77
+Y + IGTPP + +V DTGS +WV C + Y +++ + SSSYK
Sbjct: 19 QYYGEIGIGTPP--QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 74
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 23 EYVMKFSIGTPPLLDIYGIV-DTGSDLMWVQCLPCVQCYKQV--KPIYNPASSSSYKE 77
+Y + IGTPP + +V DTGS +WV C + Y +++ + SSSYK
Sbjct: 15 QYYGEIGIGTPP--QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 70
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 23 EYVMKFSIGTPPLLDIYGIV-DTGSDLMWVQCLPCVQCYKQV--KPIYNPASSSSYKE 77
+Y + IGTPP + +V DTGS +WV C + Y +++ + SSSYK
Sbjct: 16 QYYGEIGIGTPP--QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 71
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence
Of A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 12 VVQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCV--QCYKQVKPIYNP 69
V + + A+ EY SIGTPP I DTGS +WV C C K + P
Sbjct: 2 VTEQMKNEADTEYYGVISIGTPP-ESFKVIFDTGSSNLWVSSSHCSAQACSNHNK--FKP 58
Query: 70 ASSSSYKE 77
SS+Y E
Sbjct: 59 RQSSTYVE 66
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQS 82
EY IGTP D I DTGS +WV + C +NP SS+++
Sbjct: 13 EYFGTIGIGTPAQ-DFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------ 65
Query: 83 EQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG 142
+SQ+L + TYG S+T G+L + + G ++ N +FG G
Sbjct: 66 ----------ATSQEL-SITYGTG--SMT-GILGYDTVQVGGISD--TNQIFGLSETEPG 109
Query: 143 VF 144
F
Sbjct: 110 SF 111
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQS 82
EY IGTP D I DTGS +WV + C +NP SS+++
Sbjct: 13 EYFGTIGIGTPAQ-DFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------ 65
Query: 83 EQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG 142
+SQ+L + TYG S+T G+L + + G ++ N +FG G
Sbjct: 66 ----------ATSQEL-SITYGTG--SMT-GILGYDTVQVGGISD--TNQIFGLSETEPG 109
Query: 143 VF 144
F
Sbjct: 110 SF 111
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 23 EYVMKFSIGTPPLLDIYGIV-DTGSDLMWVQCLPCVQCYKQV--KPIYNPASSSSYKE 77
+Y + IGTPP + +V DTGS +WV C + Y +++ + SSSYK
Sbjct: 62 QYYGEIGIGTPP--QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 117
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of
The "c" Ring
Length = 333
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 23 EYVMKFSIGTPPLLDIYGIV-DTGSDLMWVQCLPCVQCYKQV--KPIYNPASSSSYKE 77
+Y + IGTPP + +V DTGS +WV C + Y +++ + SSSYK
Sbjct: 12 QYYGEIGIGTPP--QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 67
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQS 82
EY IGTP D I DTGS +WV + C +NP SS+++
Sbjct: 57 EYFGTIGIGTPAQ-DFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------ 109
Query: 83 EQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG 142
++ Q + TYG S+T G+L + + G ++ N +FG G
Sbjct: 110 -----------ATXQELSITYGTG--SMT-GILGYDTVQVGGISD--TNQIFGLSETEPG 153
Query: 143 VF 144
F
Sbjct: 154 SF 155
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 24/146 (16%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I DTGS +WV C +K +Y+ + S SY++ + +
Sbjct: 80 IFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTK-----------------VD 122
Query: 101 YTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVFNENEM-GLVGLGRTRL 159
TYG S KG + + +T G+ + + + + +++ E G++GLG L
Sbjct: 123 ITYG---SGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWKDL 179
Query: 160 SLAS--QILSQL-GANKFSYCLVPFH 182
S+ S I+ +L NK L F+
Sbjct: 180 SIGSIDPIVVELKNQNKIDNALFTFY 205
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 24/146 (16%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I DTGS +WV + C K +Y+ ++S SY++ + E
Sbjct: 32 IFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSYEKDGTKVE----------------- 74
Query: 101 YTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVFNENEM-GLVGLGRTRL 159
+YG S +G + + I+ G+ + + + + +++ +E G++GLG L
Sbjct: 75 ISYG---SGTVRGYFSKDVISLGDLSLPYKFIEVTDADDLEPIYSGSEFDGILGLGWKDL 131
Query: 160 SLAS---QILSQLGANKFSYCLVPFH 182
S+ S ++ NK L F+
Sbjct: 132 SIGSIDPVVVELKKQNKIDNALFTFY 157
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQS 82
EY IGTP D I DTGS +WV + C +NP SS+++
Sbjct: 13 EYFGTIGIGTPAQ-DFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------ 65
Query: 83 EQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG 142
++ Q + TYG S+T G+L + + G ++ N +FG G
Sbjct: 66 -----------ATXQELSITYGTG--SMT-GILGYDTVQVGGISD--TNQIFGLSETEPG 109
Query: 143 VF 144
F
Sbjct: 110 SF 111
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQS 82
EY IGTP D I DTGS +WV + C +NP SS+++
Sbjct: 13 EYFGTIGIGTPAQ-DFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------ 65
Query: 83 EQCHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG 142
++ Q + TYG S+T G+L + + G ++ N +FG G
Sbjct: 66 -----------ATXQELSITYGTG--SMT-GILGYDTVQVGGISD--TNQIFGLSETEPG 109
Query: 143 VF 144
F
Sbjct: 110 SF 111
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 24/146 (16%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I DTGS +WV C +K +Y+ + S SY++ + +
Sbjct: 34 IFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTK-----------------VD 76
Query: 101 YTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVFNENEM-GLVGLGRTRL 159
TYG S KG + + +T G+ + + + + +++ E G++GLG L
Sbjct: 77 ITYG---SGTVKGFFSKDLVTLGHLSMPYKFIEVIDTDDLEPIYSSVEFDGILGLGWKDL 133
Query: 160 SLAS--QILSQL-GANKFSYCLVPFH 182
S+ S I+ +L NK L F+
Sbjct: 134 SIGSIDPIVVELKNQNKIDNALFTFY 159
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 13 VQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLM------WVQCLPCVQCYKQVKPI 66
V N +G+Y KF TP L DI +D G+ + + P V+ K+ KP
Sbjct: 434 VMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFPNVE--KRPKPD 491
Query: 67 YNPAS--SSSYKELSCQSEQCHLLDTV 91
Y AS + S +++ S LLD V
Sbjct: 492 YELASIPTVSSSKIASFSGTKQLLDEV 518
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 13 VQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLM------WVQCLPCVQCYKQVKPI 66
V N +G+Y KF TP L DI +D G+ + + P V+ K+ KP
Sbjct: 457 VMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFPNVE--KRPKPD 514
Query: 67 YNPAS--SSSYKELSCQSEQCHLLDTV 91
Y AS + S +++ S LLD V
Sbjct: 515 YELASIPTVSSSKIASFSGTKQLLDEV 541
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 13 VQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLM------WVQCLPCVQCYKQVKPI 66
V N +G+Y KF TP L DI +D G+ + + P V+ K+ KP
Sbjct: 457 VMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFPNVE--KRPKPD 514
Query: 67 YNPAS--SSSYKELSCQSEQCHLLDTV 91
Y AS + S +++ S LLD V
Sbjct: 515 YELASIPTVSSSKIASFSGTKQLLDEV 541
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 13 VQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLM------WVQCLPCVQCYKQVKPI 66
V N +G+Y KF TP L DI +D G+ + + P V+ K+ KP
Sbjct: 457 VMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFPNVE--KRPKPD 514
Query: 67 YNPAS--SSSYKELSCQSEQCHLLDTV 91
Y AS + S +++ S LLD V
Sbjct: 515 YELASIPTVSSSKIASFSGTKQLLDEV 541
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 13 VQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLM------WVQCLPCVQCYKQVKPI 66
V N +G+Y KF TP L DI +D G+ + + P V+ K+ KP
Sbjct: 434 VMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFPNVE--KRPKPD 491
Query: 67 YNPAS--SSSYKELSCQSEQCHLLDTV 91
Y AS + S +++ S LLD V
Sbjct: 492 YELASIPTVSSSKIASFSGTKQLLDEV 518
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 13 VQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLM------WVQCLPCVQCYKQVKPI 66
V N +G+Y KF TP L DI +D G+ + + P V+ K+ KP
Sbjct: 434 VMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFPNVE--KRPKPD 491
Query: 67 YNPAS--SSSYKELSCQSEQCHLLDTV 91
Y AS + S +++ S LLD V
Sbjct: 492 YELASIPTVSSSKIASFSGTKQLLDEV 518
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 13 VQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLM------WVQCLPCVQCYKQVKPI 66
V N +G+Y KF TP L DI +D G+ + + P V+ K+ KP
Sbjct: 457 VMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFPNVE--KRPKPD 514
Query: 67 YNPAS--SSSYKELSCQSEQCHLLDTV 91
Y AS + S +++ S LLD V
Sbjct: 515 YELASIPTVSSSKIASFSGTKQLLDEV 541
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 77/235 (32%), Gaps = 37/235 (15%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
I DTGS +WV C + K +Y+ S +Y++ + E N
Sbjct: 39 IFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYEKDGTKVE---------------MN 83
Query: 101 YTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVFNENEMGLVGLGRTRLS 160
Y G +K ++ ++F F V G + + G+VGLG LS
Sbjct: 84 YVSGTVSGFFSKDIVTIANLSFPYK---FIEVTDTNGFEPAYTLGQFD-GIVGLGWKDLS 139
Query: 161 LAS---QILSQLGANKFSYCLVPFHTDSSITSKMYFXXXXXXXXXXXXXXXXXXKEDKTY 217
+ S ++ NK + F+ K Y Y
Sbjct: 140 IGSVDPVVVELKNQNKIEQAVFTFYLPFDDKHKGYLTIGGIEDRFYEGQLTYEKLNHDLY 199
Query: 218 YFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEE 272
+ V L+ + GNL+ + K +D+G P +F N+ E
Sbjct: 200 WQVDLD-LHFGNLT--------------VEKATAIVDSGTSSITAPTEFLNKFFE 239
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 28/92 (30%)
Query: 41 IVDTGSDLMWV--QCLPCVQCYK-------QVKPIYNPASSSSYKELSCQSEQCHLLDTV 91
IVDTGS +WV + C Y + K Y+P+ SS+ ++L+
Sbjct: 30 IVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTP---------- 79
Query: 92 SCSSQQLCNYTYGYADSSLTKGVLATERITFG 123
++ GY D S ++G L + + FG
Sbjct: 80 ---------FSIGYGDGSSSQGTLYKDTVGFG 102
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
Length = 97
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 21 NGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPC----VQCYKQVKPIYNPASSSSY 75
+ +Y + IGTPP + DTGS +WV + C + C+ K YN SS+Y
Sbjct: 12 DAQYYGEIGIGTPPQC-FTVVFDTGSSNLWVPSIHCKLLDIACWIHHK--YNSDKSSTY 67
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 21 NGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQ--VKPIYNPASSSSYKE 77
N +Y + IGTPP I DTGS +WV C + Y + +Y + SSSY E
Sbjct: 14 NSQYYGEIGIGTPPQ-TFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSSYME 71
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100
IVDTGS +WV V C K P S+ + C+ + + + S +SQ L
Sbjct: 30 IVDTGSSDLWVPD-ASVTCDKP-----RPGQSADF----CKGKGIYTPKS-STTSQNLGT 78
Query: 101 YTY-GYADSSLTKGVLATERITFGNS 125
Y GY D S ++G L + + FG +
Sbjct: 79 PFYIGYGDGSSSQGTLYKDTVGFGGA 104
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 34/95 (35%)
Query: 41 IVDTGSDLMWVQCLPCVQCYKQV------------KPIYNPASSSSYKELSCQSEQCHLL 88
IVDTGS +WV P V QV K Y+P+ SS+ ++L+
Sbjct: 30 IVDTGSSDLWV---PDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTP------- 79
Query: 89 DTVSCSSQQLCNYTYGYADSSLTKGVLATERITFG 123
+ GY D S ++G L + + FG
Sbjct: 80 ------------FKIGYGDGSSSQGTLYKDTVGFG 102
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 19 TANGEYVMKFSIGTPPL---LDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNP 69
+A+ EY+ SIGTP LD DTGS +WV + IY P
Sbjct: 12 SADSEYITSVSIGTPAQVLPLDF----DTGSSDLWVFSSETPKSSATGHAIYTP 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,247,134
Number of Sequences: 62578
Number of extensions: 462949
Number of successful extensions: 865
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 65
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)