Query 047535
Match_columns 376
No_of_seqs 119 out of 1154
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.9E-63 4.1E-68 480.4 38.4 354 12-376 73-431 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 4.9E-57 1.1E-61 437.7 33.1 313 12-375 109-450 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 2.4E-56 5.3E-61 417.5 32.2 303 15-370 2-317 (317)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 1.1E-55 2.4E-60 414.7 32.7 304 19-370 2-325 (325)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.6E-55 5.7E-60 411.8 33.2 298 22-374 2-326 (326)
6 cd05486 Cathespin_E Cathepsin 100.0 1.4E-55 3E-60 412.3 30.1 298 24-370 1-316 (316)
7 KOG1339 Aspartyl protease [Pos 100.0 7.4E-55 1.6E-59 418.4 35.1 348 16-374 39-397 (398)
8 cd05477 gastricsin Gastricsins 100.0 1.1E-54 2.3E-59 406.8 33.0 300 21-371 1-318 (318)
9 cd05487 renin_like Renin stimu 100.0 1.6E-54 3.4E-59 406.7 32.0 305 17-371 2-326 (326)
10 PTZ00147 plasmepsin-1; Provisi 100.0 3.7E-54 8E-59 414.6 33.2 312 6-372 122-450 (453)
11 cd06098 phytepsin Phytepsin, a 100.0 4.2E-54 9.2E-59 402.1 32.5 297 15-370 2-317 (317)
12 cd05472 cnd41_like Chloroplast 100.0 1.2E-53 2.5E-58 396.5 35.1 294 23-373 1-299 (299)
13 cd05485 Cathepsin_D_like Cathe 100.0 5.7E-54 1.2E-58 403.1 31.4 307 15-370 3-329 (329)
14 cd05488 Proteinase_A_fungi Fun 100.0 6.1E-54 1.3E-58 401.7 31.2 302 15-370 2-320 (320)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.8E-53 3.8E-58 409.1 33.9 313 5-372 120-449 (450)
16 cd05473 beta_secretase_like Be 100.0 2E-50 4.3E-55 384.4 32.2 319 22-376 2-350 (364)
17 cd05476 pepsin_A_like_plant Ch 100.0 5.6E-50 1.2E-54 365.2 30.4 258 23-373 1-265 (265)
18 cd06097 Aspergillopepsin_like 100.0 2.9E-50 6.3E-55 369.7 27.5 266 24-370 1-278 (278)
19 cd05475 nucellin_like Nucellin 100.0 3.5E-49 7.6E-54 361.3 30.1 258 22-373 1-273 (273)
20 PF00026 Asp: Eukaryotic aspar 100.0 1.7E-50 3.6E-55 378.6 18.6 298 23-371 1-317 (317)
21 cd05489 xylanase_inhibitor_I_l 100.0 2.9E-48 6.2E-53 366.9 32.9 317 30-371 2-361 (362)
22 cd05474 SAP_like SAPs, pepsin- 100.0 1.3E-47 2.8E-52 355.5 28.6 273 23-371 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 2.8E-45 6.1E-50 337.6 29.6 271 24-370 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 9.9E-29 2.1E-33 208.0 14.4 158 24-195 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 7.7E-24 1.7E-28 166.5 12.0 106 26-154 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.9 2.3E-23 5E-28 175.3 14.9 148 217-370 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.3 1.9E-06 4.2E-11 65.3 7.1 94 22-156 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.3 0.0015 3.2E-08 51.9 8.2 96 19-155 7-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.9 0.0069 1.5E-07 44.8 8.3 89 26-155 1-89 (90)
30 PF11925 DUF3443: Protein of u 96.2 0.16 3.4E-06 47.4 13.4 109 22-157 22-149 (370)
31 cd05479 RP_DDI RP_DDI; retrope 96.1 0.023 4.9E-07 45.3 6.8 27 342-368 98-124 (124)
32 cd05479 RP_DDI RP_DDI; retrope 95.6 0.093 2E-06 41.7 8.6 92 20-155 13-106 (124)
33 PF08284 RVP_2: Retroviral asp 94.7 0.088 1.9E-06 42.5 5.9 29 342-370 103-131 (135)
34 TIGR03698 clan_AA_DTGF clan AA 92.4 0.44 9.4E-06 36.8 5.9 24 343-366 84-107 (107)
35 COG3577 Predicted aspartyl pro 91.8 0.32 6.9E-06 41.6 4.8 85 17-137 99-183 (215)
36 cd06095 RP_RTVL_H_like Retrope 91.5 1.2 2.7E-05 32.7 7.3 25 28-55 3-27 (86)
37 cd05484 retropepsin_like_LTR_2 91.4 0.23 5E-06 37.0 3.3 28 24-54 1-28 (91)
38 PF13975 gag-asp_proteas: gag- 89.1 0.72 1.6E-05 32.7 4.1 34 20-56 5-38 (72)
39 TIGR02281 clan_AA_DTGA clan AA 86.1 2.3 5E-05 33.6 5.8 36 215-270 9-44 (121)
40 PF12384 Peptidase_A2B: Ty3 tr 85.8 2.3 4.9E-05 35.1 5.6 24 248-271 45-68 (177)
41 PF00077 RVP: Retroviral aspar 83.6 1.6 3.6E-05 32.8 3.8 28 25-55 7-34 (100)
42 PF13650 Asp_protease_2: Aspar 83.3 1.6 3.5E-05 31.8 3.6 21 250-270 11-31 (90)
43 cd06094 RP_Saci_like RP_Saci_l 82.4 3.9 8.5E-05 30.2 5.1 79 247-355 8-87 (89)
44 PF09668 Asp_protease: Asparty 81.8 3.5 7.7E-05 32.6 5.1 20 250-269 37-56 (124)
45 cd05484 retropepsin_like_LTR_2 79.6 2.8 6E-05 31.0 3.7 21 250-270 13-33 (91)
46 PF13975 gag-asp_proteas: gag- 78.9 4 8.7E-05 28.8 4.2 21 250-270 21-41 (72)
47 cd05483 retropepsin_like_bacte 76.0 5.4 0.00012 29.3 4.5 21 250-270 15-35 (96)
48 cd06095 RP_RTVL_H_like Retrope 71.9 5.2 0.00011 29.3 3.4 21 250-270 11-31 (86)
49 KOG0012 DNA damage inducible p 68.8 48 0.001 31.2 9.4 40 332-371 306-346 (380)
50 cd05482 HIV_retropepsin_like R 65.1 8.7 0.00019 28.3 3.3 25 27-54 2-26 (87)
51 PF00077 RVP: Retroviral aspar 64.2 5.9 0.00013 29.7 2.4 17 250-266 18-34 (100)
52 PF12384 Peptidase_A2B: Ty3 tr 59.8 13 0.00028 30.8 3.6 29 23-54 34-62 (177)
53 TIGR03698 clan_AA_DTGF clan AA 55.5 15 0.00033 28.1 3.3 65 26-124 2-70 (107)
54 cd05481 retropepsin_like_LTR_1 48.2 17 0.00038 27.0 2.5 23 249-271 11-33 (93)
55 PF09668 Asp_protease: Asparty 47.5 32 0.00069 27.3 4.0 38 20-60 21-58 (124)
56 PF02160 Peptidase_A3: Caulifl 46.0 24 0.00052 30.5 3.3 28 342-370 90-117 (201)
57 COG3577 Predicted aspartyl pro 45.1 75 0.0016 27.5 6.1 41 206-267 95-135 (215)
58 COG5550 Predicted aspartyl pro 44.7 15 0.00032 28.9 1.7 88 251-367 29-118 (125)
59 cd05480 NRIP_C NRIP_C; putativ 44.5 1.4E+02 0.003 22.7 8.4 32 332-363 71-103 (103)
60 cd05475 nucellin_like Nucellin 37.3 52 0.0011 29.7 4.4 33 21-54 156-194 (273)
61 PF08284 RVP_2: Retroviral asp 33.8 58 0.0012 26.1 3.6 30 22-54 20-49 (135)
62 cd05476 pepsin_A_like_plant Ch 33.1 71 0.0015 28.7 4.6 33 21-54 145-193 (265)
63 cd06097 Aspergillopepsin_like 31.1 53 0.0012 29.7 3.5 39 15-54 170-215 (278)
64 cd05471 pepsin_like Pepsin-lik 28.5 79 0.0017 28.3 4.1 40 15-55 172-220 (283)
65 cd06098 phytepsin Phytepsin, a 28.2 69 0.0015 29.7 3.7 33 21-54 187-227 (317)
66 cd06096 Plasmepsin_5 Plasmepsi 26.5 86 0.0019 29.2 4.1 32 22-54 208-248 (326)
67 cd05472 cnd41_like Chloroplast 25.8 63 0.0014 29.6 3.0 33 22-54 146-188 (299)
68 cd00303 retropepsin_like Retro 23.1 1.5E+02 0.0032 19.9 4.0 20 250-269 11-30 (92)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.9e-63 Score=480.37 Aligned_cols=354 Identities=52% Similarity=0.922 Sum_probs=296.8
Q ss_pred ceeccccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCC
Q 047535 12 VVQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTV 91 (376)
Q Consensus 12 ~~~~~~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~ 91 (376)
.+..++...+++|+++|.|||||| ++.|++||||+++||+|.+|..|..+.++.|||++|+||+.++|+++.|..+...
T Consensus 73 ~~~~~~~~~~~~Y~v~i~iGTPpq-~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~ 151 (431)
T PLN03146 73 DPQSDLISNGGEYLMNISIGTPPV-PILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ 151 (431)
T ss_pred ccccCcccCCccEEEEEEcCCCCc-eEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC
Confidence 344455566789999999999999 9999999999999999999999998889999999999999999999999877643
Q ss_pred -CCCCCCCCeeeEEeCCCCeeeEEEEEEEEEecCCC---CCcccEEEeeeeCCCCCCCCCcceEeecCCCCChHHHHHHh
Q 047535 92 -SCSSQQLCNYTYGYADSSLTKGVLATERITFGNSN---NFFDNVVFGCGHNNTGVFNENEMGLVGLGRTRLSLASQILS 167 (376)
Q Consensus 92 -~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~---~~~~~~~fg~~~~~~~~~~~~~~GilGL~~~~~s~~~ql~~ 167 (376)
.|..++.|.|.+.|+||+.+.|.+++|++++++.. ++++++.|||++...+.|....+||||||+...|++.|+..
T Consensus 152 ~~c~~~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~ 231 (431)
T PLN03146 152 ASCSDENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGS 231 (431)
T ss_pred CCCCCCCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhH
Confidence 58777789999999999987899999999998732 35889999999987766644689999999999999999987
Q ss_pred hcCCCeEEEecCCCCCCCCccceEEECCCCcccCCCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCC-cc
Q 047535 168 QLGANKFSYCLVPFHTDSSITSKMYFGNGSEVSGGGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSG-AI 246 (376)
Q Consensus 168 ~~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~-~~ 246 (376)
.+.. +|++||.+...+....|.|+||+.+.....++.|+|++......+|.|.+.+|+|++ +.+.++...+ ..
T Consensus 232 ~~~~-~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg-----~~l~~~~~~~~~~ 305 (431)
T PLN03146 232 SIGG-KFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGS-----KKLPYTGSSKNGV 305 (431)
T ss_pred hhCC-cEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECC-----EECcCCccccccC
Confidence 7665 999999764333345799999996544445589999986433569999999999999 8777654322 12
Q ss_pred CCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEe
Q 047535 247 SKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIP 326 (376)
Q Consensus 247 ~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~ 326 (376)
....+||||||++++||+++|+++.++|.+.+......+.......|+...... .+|.|+|+|+| ..+.|+|++|++.
T Consensus 306 ~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~-~~P~i~~~F~G-a~~~l~~~~~~~~ 383 (431)
T PLN03146 306 EEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSDI-KLPIITAHFTG-ADVKLQPLNTFVK 383 (431)
T ss_pred CCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCCC-CCCeEEEEECC-CeeecCcceeEEE
Confidence 345799999999999999999999999988876443333334567899754333 79999999997 9999999999998
Q ss_pred cCCCCeEEEEEEccCCCceeechhhhcceEEEEECCCCEEEEecCCCCCC
Q 047535 327 PPVEGVFCFAMQPIDGDVGIFGNFAQSDLFIGYDFDSQMVSFKPTDCTKQ 376 (376)
Q Consensus 327 ~~~~~~~C~~i~~~~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~~c~~~ 376 (376)
.. .+..|+++... ...||||+.|||++|+|||.+++|||||+++|.++
T Consensus 384 ~~-~~~~Cl~~~~~-~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 384 VS-EDLVCFAMIPT-SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred cC-CCcEEEEEecC-CCceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 76 56789998865 45699999999999999999999999999999975
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=4.9e-57 Score=437.73 Aligned_cols=313 Identities=22% Similarity=0.320 Sum_probs=259.4
Q ss_pred ceeccccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCC
Q 047535 12 VVQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTV 91 (376)
Q Consensus 12 ~~~~~~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~ 91 (376)
..+++.++.+.+|+++|+|||||| +|.|+|||||++|||++..|..+.|..|+.|||++|+||+...+...
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ-~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~-------- 179 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPK-SFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDE-------- 179 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCc-eEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCc--------
Confidence 467788889999999999999999 99999999999999999999988888899999999999998432110
Q ss_pred CCCCCCCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCC-CC-CCCcceEeecCCCC---------Ch
Q 047535 92 SCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG-VF-NENEMGLVGLGRTR---------LS 160 (376)
Q Consensus 92 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGL~~~~---------~s 160 (376)
...+.++|++|+. .|.++.|+|++++ ++++++.||+++...+ .| ...+|||||||++. .+
T Consensus 180 ------~~~~~i~YGsGs~-~G~l~~DtV~ig~--l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p 250 (482)
T PTZ00165 180 ------SAETYIQYGTGEC-VLALGKDTVKIGG--LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALP 250 (482)
T ss_pred ------cceEEEEeCCCcE-EEEEEEEEEEECC--EEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCC
Confidence 1257799999998 5999999999999 8999999999998754 45 55789999999874 34
Q ss_pred HHHHHHhh--cCCCeEEEecCCCCCCCCccceEEECCCCcccC---CCceeeeeecCCCCceEEEEEeeEEecCCCCcee
Q 047535 161 LASQILSQ--LGANKFSYCLVPFHTDSSITSKMYFGNGSEVSG---GGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSK 235 (376)
Q Consensus 161 ~~~ql~~~--~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~---~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~ 235 (376)
++.++..+ +.+++||+||... .+..|.|+|||.|..+. +.+.|+|+.. ..+|.|.+++|+|++ +
T Consensus 251 ~~~~l~~qgli~~~~FS~yL~~~---~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~---~~yW~i~l~~i~vgg-----~ 319 (482)
T PTZ00165 251 IVDNIKKQNLLKRNIFSFYMSKD---LNQPGSISFGSADPKYTLEGHKIWWFPVIS---TDYWEIEVVDILIDG-----K 319 (482)
T ss_pred HHHHHHHcCCcccceEEEEeccC---CCCCCEEEeCCcCHHHcCCCCceEEEEccc---cceEEEEeCeEEECC-----E
Confidence 66777765 6779999999753 23469999999775432 3599999987 679999999999999 7
Q ss_pred eEeccCCCCccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecC--C
Q 047535 236 LIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDG--G 313 (376)
Q Consensus 236 ~~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g--~ 313 (376)
.+... .....|++||||+++++|++++++|.+++... .+|...+ .+|+|+|.|++ +
T Consensus 320 ~~~~~-----~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~~----~lP~itf~f~g~~g 377 (482)
T PTZ00165 320 SLGFC-----DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNKD----SLPRISFVLEDVNG 377 (482)
T ss_pred Eeeec-----CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccccc----cCCceEEEECCCCC
Confidence 66542 13568999999999999999999999886421 2687655 89999999986 1
Q ss_pred --ceEEECCCceEEec---CCCCeEE-EEEEccC-----CCceeechhhhcceEEEEECCCCEEEEecCCCCC
Q 047535 314 --AKVPLIHTSTFIPP---PVEGVFC-FAMQPID-----GDVGIFGNFAQSDLFIGYDFDSQMVSFKPTDCTK 375 (376)
Q Consensus 314 --~~~~i~~~~y~~~~---~~~~~~C-~~i~~~~-----~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~~c~~ 375 (376)
..+.|+|++|+.+. ...+..| ++++..+ ++.||||++|||++|+|||.+++|||||+++|..
T Consensus 378 ~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 378 RKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred ceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 28999999999974 2144688 5787643 3579999999999999999999999999999864
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.4e-56 Score=417.52 Aligned_cols=303 Identities=21% Similarity=0.348 Sum_probs=256.2
Q ss_pred ccccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCC
Q 047535 15 SNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCS 94 (376)
Q Consensus 15 ~~~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~ 94 (376)
++.+..+..|+++|+||||+| ++.|+|||||+++||++..|..|.|+.++.|+|++|+||+...
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q-~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~--------------- 65 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQ-DFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG--------------- 65 (317)
T ss_pred ccccccCCEEEEEEEeCCCCc-EEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC---------------
Confidence 455667899999999999999 9999999999999999999998888889999999999999877
Q ss_pred CCCCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCCC--CCCcceEeecCCCC------ChHHHHHH
Q 047535 95 SQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVF--NENEMGLVGLGRTR------LSLASQIL 166 (376)
Q Consensus 95 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGL~~~~------~s~~~ql~ 166 (376)
+.+.+.|++|+. .|.+++|+|++++ +.++++.||+++...+.+ ....+||||||++. .+++.+|.
T Consensus 66 ----~~~~~~yg~gs~-~G~~~~D~v~ig~--~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~ 138 (317)
T cd05478 66 ----QPLSIQYGTGSM-TGILGYDTVQVGG--ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMM 138 (317)
T ss_pred ----cEEEEEECCceE-EEEEeeeEEEECC--EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHH
Confidence 689999999996 7999999999999 889999999998776543 34579999999863 34778887
Q ss_pred hh--cCCCeEEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCC
Q 047535 167 SQ--LGANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSS 243 (376)
Q Consensus 167 ~~--~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~ 243 (376)
++ +.+++||+||.... ...|.|+|||.|..+. +.+.|+|+.. +.+|.|.+++|+|++ +.+..
T Consensus 139 ~~g~i~~~~FS~~L~~~~---~~~g~l~~Gg~d~~~~~g~l~~~p~~~---~~~w~v~l~~v~v~g-----~~~~~---- 203 (317)
T cd05478 139 SQGLVSQDLFSVYLSSNG---QQGSVVTFGGIDPSYYTGSLNWVPVTA---ETYWQITVDSVTING-----QVVAC---- 203 (317)
T ss_pred hCCCCCCCEEEEEeCCCC---CCCeEEEEcccCHHHccCceEEEECCC---CcEEEEEeeEEEECC-----EEEcc----
Confidence 76 66789999998642 2468999999876554 4499999976 679999999999999 77653
Q ss_pred CccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCce
Q 047535 244 GAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTST 323 (376)
Q Consensus 244 ~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y 323 (376)
..+..++|||||+++++|++.+++|++++..... ....+..+|+... ++|.|+|.|+| ..++|+|++|
T Consensus 204 --~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~~----~~P~~~f~f~g-~~~~i~~~~y 271 (317)
T cd05478 204 --SGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN-----QNGEMVVNCSSIS----SMPDVVFTING-VQYPLPPSAY 271 (317)
T ss_pred --CCCCEEEECCCchhhhCCHHHHHHHHHHhCCccc-----cCCcEEeCCcCcc----cCCcEEEEECC-EEEEECHHHh
Confidence 2345899999999999999999999998854321 1334567888655 89999999987 9999999999
Q ss_pred EEecCCCCeEEE-EEEccC-CCceeechhhhcceEEEEECCCCEEEEec
Q 047535 324 FIPPPVEGVFCF-AMQPID-GDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 324 ~~~~~~~~~~C~-~i~~~~-~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
+.+. ...|+ +++..+ .+.||||++|||++|+|||++++|||||+
T Consensus 272 ~~~~---~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 272 ILQD---QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred eecC---CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9875 35785 577654 46899999999999999999999999996
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.1e-55 Score=414.70 Aligned_cols=304 Identities=22% Similarity=0.387 Sum_probs=248.9
Q ss_pred ccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCC--CCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCC
Q 047535 19 TANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQC--YKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQ 96 (376)
Q Consensus 19 ~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c--~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~ 96 (376)
+.+.+|+++|.||||+| ++.|+|||||+++||++..|..| .|..++.|+|++|+||+...
T Consensus 2 ~~~~~Y~~~i~iGtP~q-~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~----------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQ-TFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG----------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCc-EEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC-----------------
Confidence 56789999999999999 99999999999999999999843 56678899999999998755
Q ss_pred CCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCC-CC-CCCcceEeecCCCCC------hHHHHHHhh
Q 047535 97 QLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG-VF-NENEMGLVGLGRTRL------SLASQILSQ 168 (376)
Q Consensus 97 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGL~~~~~------s~~~ql~~~ 168 (376)
+.+.+.|++|+. .|.+++|+|++++ .+++++.||+++...+ .+ ...++||||||++.. +++.+|..+
T Consensus 64 --~~~~i~Yg~G~~-~G~~~~D~v~~g~--~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~ 138 (325)
T cd05490 64 --TEFAIQYGSGSL-SGYLSQDTVSIGG--LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQ 138 (325)
T ss_pred --cEEEEEECCcEE-EEEEeeeEEEECC--EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhc
Confidence 689999999986 7999999999999 8899999999988764 34 456799999998643 455677765
Q ss_pred --cCCCeEEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCCc
Q 047535 169 --LGANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSGA 245 (376)
Q Consensus 169 --~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~ 245 (376)
+..++||+||.... +....|.|+|||+|..+. +.+.|+|+.. ..+|.|.+++|+|++ +....
T Consensus 139 g~i~~~~FS~~L~~~~-~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~---~~~w~v~l~~i~vg~-----~~~~~------ 203 (325)
T cd05490 139 KLVEQNVFSFYLNRDP-DAQPGGELMLGGTDPKYYTGDLHYVNVTR---KAYWQIHMDQVDVGS-----GLTLC------ 203 (325)
T ss_pred CCCCCCEEEEEEeCCC-CCCCCCEEEECccCHHHcCCceEEEEcCc---ceEEEEEeeEEEECC-----eeeec------
Confidence 66789999997431 122469999999776554 4499999976 679999999999988 53321
Q ss_pred cCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEE
Q 047535 246 ISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFI 325 (376)
Q Consensus 246 ~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~ 325 (376)
.....++|||||+++++|++++++|.++|.+. .. ....+..+|.... .+|.|+|.|++ ..+.|+|++|++
T Consensus 204 ~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~-~~~~~~~~C~~~~----~~P~i~f~fgg-~~~~l~~~~y~~ 273 (325)
T cd05490 204 KGGCEAIVDTGTSLITGPVEEVRALQKAIGAV----PL-IQGEYMIDCEKIP----TLPVISFSLGG-KVYPLTGEDYIL 273 (325)
T ss_pred CCCCEEEECCCCccccCCHHHHHHHHHHhCCc----cc-cCCCEEecccccc----cCCCEEEEECC-EEEEEChHHeEE
Confidence 23458999999999999999999999987542 11 1345677898655 79999999988 999999999998
Q ss_pred ecCC-CCeEEE-EEEcc-----CCCceeechhhhcceEEEEECCCCEEEEec
Q 047535 326 PPPV-EGVFCF-AMQPI-----DGDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 326 ~~~~-~~~~C~-~i~~~-----~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
+... ....|+ +++.. ....||||++|||++|+|||++++|||||+
T Consensus 274 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 274 KVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred eccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 7542 235785 56652 245899999999999999999999999996
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.6e-55 Score=411.82 Aligned_cols=298 Identities=24% Similarity=0.439 Sum_probs=246.1
Q ss_pred ceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCee
Q 047535 22 GEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNY 101 (376)
Q Consensus 22 ~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~ 101 (376)
++|+++|.||||+| ++.|+|||||+++||+|..|+.|.++.++.|||++|+|++.+.|++..|.. ...| +++.|.+
T Consensus 2 ~~Y~~~i~vGtP~Q-~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~-~~~~~~~ 77 (326)
T cd06096 2 AYYFIDIFIGNPPQ-KQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSC-LNNKCEY 77 (326)
T ss_pred ceEEEEEEecCCCe-EEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcC-CCCcCcE
Confidence 68999999999999 999999999999999999999999888899999999999999999999953 2344 3466999
Q ss_pred eEEeCCCCeeeEEEEEEEEEecCCCCCcc-------cEEEeeeeCCCCCC-CCCcceEeecCCCCCh----HHHHHHhh-
Q 047535 102 TYGYADSSLTKGVLATERITFGNSNNFFD-------NVVFGCGHNNTGVF-NENEMGLVGLGRTRLS----LASQILSQ- 168 (376)
Q Consensus 102 ~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~-------~~~fg~~~~~~~~~-~~~~~GilGL~~~~~s----~~~ql~~~- 168 (376)
.+.|++|+.+.|.+++|+|+|++ ..++ ++.|||+....+.+ ....+||||||+...+ ...++..+
T Consensus 78 ~i~Y~~gs~~~G~~~~D~v~lg~--~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~ 155 (326)
T cd06096 78 SISYSEGSSISGFYFSDFVSFES--YLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKR 155 (326)
T ss_pred EEEECCCCceeeEEEEEEEEecc--CCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhc
Confidence 99999998778999999999998 4442 57899998877655 5668999999997532 21222222
Q ss_pred -cC--CCeEEEecCCCCCCCCccceEEECCCCcccC-----------CCceeeeeecCCCCceEEEEEeeEEecCCCCce
Q 047535 169 -LG--ANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-----------GGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSS 234 (376)
Q Consensus 169 -~~--~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-----------~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~ 234 (376)
+. .++||+||.. ..|.|+|||+|..+. +++.|+|+.. ..+|.|.+++|+|++
T Consensus 156 ~~~~~~~~FS~~l~~------~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~---~~~y~v~l~~i~vg~----- 221 (326)
T cd06096 156 PKLKKDKIFSICLSE------DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR---KYYYYVKLEGLSVYG----- 221 (326)
T ss_pred ccccCCceEEEEEcC------CCeEEEECccChhhhcccccccccccCCceEEeccC---CceEEEEEEEEEEcc-----
Confidence 22 3899999974 258999999765432 4699999987 569999999999998
Q ss_pred eeEeccCCCCccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCc
Q 047535 235 KLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGA 314 (376)
Q Consensus 235 ~~~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~ 314 (376)
+..... ......++|||||++++||++++++|.+.+ |+|+|.|+++.
T Consensus 222 ~~~~~~----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-----------------------------P~i~~~f~~g~ 268 (326)
T cd06096 222 TTSNSG----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-----------------------------PTITIIFENNL 268 (326)
T ss_pred ccccee----cccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------------CcEEEEEcCCc
Confidence 541110 134678999999999999999999988775 69999999559
Q ss_pred eEEECCCceEEecCCCCeEEEEEEccCCCceeechhhhcceEEEEECCCCEEEEecCCCC
Q 047535 315 KVPLIHTSTFIPPPVEGVFCFAMQPIDGDVGIFGNFAQSDLFIGYDFDSQMVSFKPTDCT 374 (376)
Q Consensus 315 ~~~i~~~~y~~~~~~~~~~C~~i~~~~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~~c~ 374 (376)
.++|+|++|++... ...||+++... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 269 ~~~i~p~~y~~~~~-~~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 269 KIDWKPSSYLYKKE-SFWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEEECHHHhccccC-CceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999999999875 44566766654 568999999999999999999999999999995
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.4e-55 Score=412.25 Aligned_cols=298 Identities=22% Similarity=0.361 Sum_probs=246.4
Q ss_pred EEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCeeeE
Q 047535 24 YVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNYTY 103 (376)
Q Consensus 24 y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~ 103 (376)
|+++|+||||+| +++|+|||||+++||++..|+.+.|..++.|||++|+||+... +.+++
T Consensus 1 Y~~~i~iGtP~Q-~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~-------------------~~~~i 60 (316)
T cd05486 1 YFGQISIGTPPQ-NFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG-------------------EAFSI 60 (316)
T ss_pred CeEEEEECCCCc-EEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC-------------------cEEEE
Confidence 899999999999 9999999999999999999987677788899999999998877 79999
Q ss_pred EeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCC-CC-CCCcceEeecCCCCCh------HHHHHHhh--cCCCe
Q 047535 104 GYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG-VF-NENEMGLVGLGRTRLS------LASQILSQ--LGANK 173 (376)
Q Consensus 104 ~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGL~~~~~s------~~~ql~~~--~~~~~ 173 (376)
.|++|+. .|.+++|+|++++ ++++++.||++....+ .| ...++||||||++..+ ++.+|.++ +..++
T Consensus 61 ~Yg~g~~-~G~~~~D~v~ig~--~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~ 137 (316)
T cd05486 61 QYGTGSL-TGIIGIDQVTVEG--ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPM 137 (316)
T ss_pred EeCCcEE-EEEeeecEEEECC--EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCE
Confidence 9999986 7999999999999 8899999999877654 34 4568999999986433 46677765 66789
Q ss_pred EEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCCccCCCceE
Q 047535 174 FSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMF 252 (376)
Q Consensus 174 fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~i 252 (376)
||+||..... ....|.|+|||.|..+. +++.|+|+.. ..+|.|.+++|+|++ +.+.. .....++
T Consensus 138 FS~~L~~~~~-~~~~g~l~fGg~d~~~~~g~l~~~pi~~---~~~w~v~l~~i~v~g-----~~~~~------~~~~~ai 202 (316)
T cd05486 138 FSVYMSRNPN-SADGGELVFGGFDTSRFSGQLNWVPVTV---QGYWQIQLDNIQVGG-----TVIFC------SDGCQAI 202 (316)
T ss_pred EEEEEccCCC-CCCCcEEEEcccCHHHcccceEEEECCC---ceEEEEEeeEEEEec-----ceEec------CCCCEEE
Confidence 9999985421 12469999999876554 4499999976 679999999999999 76543 2345899
Q ss_pred EecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEecCC-CC
Q 047535 253 IDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIPPPV-EG 331 (376)
Q Consensus 253 iDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~-~~ 331 (376)
|||||+++++|++.+++|.+.+.+.. ....+.++|.... .+|+|+|.|+| ..++|+|++|++.... +.
T Consensus 203 iDTGTs~~~lP~~~~~~l~~~~~~~~------~~~~~~~~C~~~~----~~p~i~f~f~g-~~~~l~~~~y~~~~~~~~~ 271 (316)
T cd05486 203 VDTGTSLITGPSGDIKQLQNYIGATA------TDGEYGVDCSTLS----LMPSVTFTING-IPYSLSPQAYTLEDQSDGG 271 (316)
T ss_pred ECCCcchhhcCHHHHHHHHHHhCCcc------cCCcEEEeccccc----cCCCEEEEECC-EEEEeCHHHeEEecccCCC
Confidence 99999999999999999988774321 1234567888655 79999999987 9999999999987521 34
Q ss_pred eEEE-EEEccC-----CCceeechhhhcceEEEEECCCCEEEEec
Q 047535 332 VFCF-AMQPID-----GDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 332 ~~C~-~i~~~~-----~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
..|+ +++..+ .+.||||++|||++|+|||.+++|||||+
T Consensus 272 ~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 272 GYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 5785 576532 35799999999999999999999999996
No 7
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-55 Score=418.43 Aligned_cols=348 Identities=37% Similarity=0.617 Sum_probs=286.0
Q ss_pred cccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCC-CCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCC
Q 047535 16 NVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCV-QCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCS 94 (376)
Q Consensus 16 ~~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~-~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~ 94 (376)
......++|+++|.|||||| .|.|++||||+++||+|..|+ .|..+.++.|+|++|+||+...|.+..|...... |.
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq-~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~~ 116 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQ-SFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-CS 116 (398)
T ss_pred cccccccccEEEEecCCCCe-eeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-cc
Confidence 34445689999999999999 999999999999999999999 7887666669999999999999999999987655 88
Q ss_pred CCCCCeeeEEeCCCCeeeEEEEEEEEEecCCC-CCcccEEEeeeeCCCCCC-C-CCcceEeecCCCCChHHHHHHhhcC-
Q 047535 95 SQQLCNYTYGYADSSLTKGVLATERITFGNSN-NFFDNVVFGCGHNNTGVF-N-ENEMGLVGLGRTRLSLASQILSQLG- 170 (376)
Q Consensus 95 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~-~~~~~~~fg~~~~~~~~~-~-~~~~GilGL~~~~~s~~~ql~~~~~- 170 (376)
+++.|.|.+.|++|+.+.|.+++|+|++++.. +.+++++|||+....+.+ . .+++||||||+...+++.|+.....
T Consensus 117 ~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~ 196 (398)
T KOG1339|consen 117 PNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNA 196 (398)
T ss_pred cCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCC
Confidence 89999999999997777999999999999731 456679999999987533 2 5689999999999999999887644
Q ss_pred CCeEEEecCCCCCCCCccceEEECCCCcccCCC-ceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCCccCCC
Q 047535 171 ANKFSYCLVPFHTDSSITSKMYFGNGSEVSGGG-VVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKG 249 (376)
Q Consensus 171 ~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~~~-~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 249 (376)
.++|++||.....+....|.|+||+.+.....+ +.|+|+..... .+|.|.+.+|+|++ +. .+....+.....
T Consensus 197 ~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg-----~~-~~~~~~~~~~~~ 269 (398)
T KOG1339|consen 197 INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGG-----KR-PIGSSLFCTDGG 269 (398)
T ss_pred ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECC-----cc-CCCcceEecCCC
Confidence 358999999774333457999999977766555 99999999543 59999999999998 65 443333222257
Q ss_pred ceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEecCC
Q 047535 250 NMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIPPPV 329 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~ 329 (376)
.+|+||||++++||.++|++|.++|.+.+.. ......++..|+........+|.|+|+|++++.|.+++++|++....
T Consensus 270 ~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~ 347 (398)
T KOG1339|consen 270 GAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSD 347 (398)
T ss_pred CEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECC
Confidence 8999999999999999999999999886411 11245577899987722123999999999659999999999998762
Q ss_pred CCeEEEEEEccC-C-CceeechhhhcceEEEEECC-CCEEEEec--CCCC
Q 047535 330 EGVFCFAMQPID-G-DVGIFGNFAQSDLFIGYDFD-SQMVSFKP--TDCT 374 (376)
Q Consensus 330 ~~~~C~~i~~~~-~-~~~ilG~~fl~~~y~vFD~~-~~rIGfa~--~~c~ 374 (376)
....|+++.... . ..||||+.|+++++++||.. ++|||||+ ..|+
T Consensus 348 ~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 348 GGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 222298866653 3 48999999999999999999 99999999 7886
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.1e-54 Score=406.76 Aligned_cols=300 Identities=22% Similarity=0.392 Sum_probs=252.7
Q ss_pred CceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCe
Q 047535 21 NGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100 (376)
Q Consensus 21 ~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~ 100 (376)
+..|+++|.|||||| ++.|+|||||+++||++..|..+.|..++.|||++|+||+... |.
T Consensus 1 ~~~y~~~i~iGtP~q-~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~-------------------~~ 60 (318)
T cd05477 1 DMSYYGEISIGTPPQ-NFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG-------------------ET 60 (318)
T ss_pred CcEEEEEEEECCCCc-EEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC-------------------cE
Confidence 468999999999999 9999999999999999999998788888999999999999876 79
Q ss_pred eeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCC-C-CCCcceEeecCCC------CChHHHHHHhh--cC
Q 047535 101 YTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGV-F-NENEMGLVGLGRT------RLSLASQILSQ--LG 170 (376)
Q Consensus 101 ~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGL~~~------~~s~~~ql~~~--~~ 170 (376)
+++.|++|+. .|.++.|++++++ .+++++.|||++...+. + ....+||||||++ ..+++.+|..+ +.
T Consensus 61 ~~~~Yg~Gs~-~G~~~~D~i~~g~--~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~ 137 (318)
T cd05477 61 FSLQYGSGSL-TGIFGYDTVTVQG--IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQ 137 (318)
T ss_pred EEEEECCcEE-EEEEEeeEEEECC--EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcC
Confidence 9999999987 7999999999999 88999999999986542 3 4567999999985 35678888876 77
Q ss_pred CCeEEEecCCCCCCCCccceEEECCCCcccCCC-ceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCCccCCC
Q 047535 171 ANKFSYCLVPFHTDSSITSKMYFGNGSEVSGGG-VVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKG 249 (376)
Q Consensus 171 ~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~~~-~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 249 (376)
.++||+||.+.. ....|.|+|||.|..+..+ +.|+|+.. ..+|.|.+++|+|++ +.+... ....
T Consensus 138 ~~~FS~~L~~~~--~~~~g~l~fGg~d~~~~~g~l~~~pv~~---~~~w~v~l~~i~v~g-----~~~~~~-----~~~~ 202 (318)
T cd05477 138 APIFSFYLSGQQ--GQQGGELVFGGVDNNLYTGQIYWTPVTS---ETYWQIGIQGFQING-----QATGWC-----SQGC 202 (318)
T ss_pred CCEEEEEEcCCC--CCCCCEEEEcccCHHHcCCceEEEecCC---ceEEEEEeeEEEECC-----EEeccc-----CCCc
Confidence 799999998642 2246999999987665544 99999976 679999999999999 766432 2345
Q ss_pred ceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEecCC
Q 047535 250 NMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIPPPV 329 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~ 329 (376)
.++|||||+++++|++++++|++.+.+... ....+..+|...+ .+|.|+|.|++ ..+.|++++|+...
T Consensus 203 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~~----~~p~l~~~f~g-~~~~v~~~~y~~~~-- 270 (318)
T cd05477 203 QAIVDTGTSLLTAPQQVMSTLMQSIGAQQD-----QYGQYVVNCNNIQ----NLPTLTFTING-VSFPLPPSAYILQN-- 270 (318)
T ss_pred eeeECCCCccEECCHHHHHHHHHHhCCccc-----cCCCEEEeCCccc----cCCcEEEEECC-EEEEECHHHeEecC--
Confidence 799999999999999999999999865432 2344567888655 79999999988 99999999999875
Q ss_pred CCeEE-EEEEccC------CCceeechhhhcceEEEEECCCCEEEEecC
Q 047535 330 EGVFC-FAMQPID------GDVGIFGNFAQSDLFIGYDFDSQMVSFKPT 371 (376)
Q Consensus 330 ~~~~C-~~i~~~~------~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~ 371 (376)
. ..| +++++.. ...||||.+|||++|+|||++++|||||++
T Consensus 271 ~-~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 N-GYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred C-CeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 2 457 5786531 247999999999999999999999999985
No 9
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.6e-54 Score=406.72 Aligned_cols=305 Identities=21% Similarity=0.349 Sum_probs=251.2
Q ss_pred ccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCC--CCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCC
Q 047535 17 VSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQC--YKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCS 94 (376)
Q Consensus 17 ~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c--~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~ 94 (376)
.+..+.+|+++|+||||+| .++|+|||||+++||++..|..| .|..+..|+|++|+||+...
T Consensus 2 ~~~~~~~y~~~i~iGtP~q-~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 2 TNYLDTQYYGEIGIGTPPQ-TFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred cccCCCeEEEEEEECCCCc-EEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC---------------
Confidence 4567899999999999999 99999999999999999999864 57778899999999999876
Q ss_pred CCCCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCC-CC-CCCcceEeecCCCCC------hHHHHHH
Q 047535 95 SQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG-VF-NENEMGLVGLGRTRL------SLASQIL 166 (376)
Q Consensus 95 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGL~~~~~------s~~~ql~ 166 (376)
|.+++.|++|++ .|.+++|+|++++ +.+. +.||++..... .+ ....+||||||++.. +++.+|.
T Consensus 66 ----~~~~~~Yg~g~~-~G~~~~D~v~~g~--~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~ 137 (326)
T cd05487 66 ----TEFTIHYASGTV-KGFLSQDIVTVGG--IPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIM 137 (326)
T ss_pred ----EEEEEEeCCceE-EEEEeeeEEEECC--EEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHH
Confidence 789999999986 8999999999999 6664 78999987643 33 446899999998643 3556666
Q ss_pred hh--cCCCeEEEecCCCCCCCCccceEEECCCCcccCC-CceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCC
Q 047535 167 SQ--LGANKFSYCLVPFHTDSSITSKMYFGNGSEVSGG-GVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSS 243 (376)
Q Consensus 167 ~~--~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~~-~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~ 243 (376)
.+ +..++||+||...+. ....|.|+|||.|..+.. .+.|+|+.. ..+|.|.+++++|++ +.+..
T Consensus 138 ~qg~i~~~~FS~~L~~~~~-~~~~G~l~fGg~d~~~y~g~l~~~~~~~---~~~w~v~l~~i~vg~-----~~~~~---- 204 (326)
T cd05487 138 SQGVLKEDVFSVYYSRDSS-HSLGGEIVLGGSDPQHYQGDFHYINTSK---TGFWQIQMKGVSVGS-----STLLC---- 204 (326)
T ss_pred hcCCCCCCEEEEEEeCCCC-CCCCcEEEECCcChhhccCceEEEECCc---CceEEEEecEEEECC-----EEEec----
Confidence 65 777899999986421 235699999997765554 499999876 669999999999999 76653
Q ss_pred CccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCce
Q 047535 244 GAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTST 323 (376)
Q Consensus 244 ~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y 323 (376)
.....++|||||+++++|++.++++++++.+... ...+..+|+... .+|.|+|+|++ ..++|++++|
T Consensus 205 --~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~------~~~y~~~C~~~~----~~P~i~f~fgg-~~~~v~~~~y 271 (326)
T cd05487 205 --EDGCTAVVDTGASFISGPTSSISKLMEALGAKER------LGDYVVKCNEVP----TLPDISFHLGG-KEYTLSSSDY 271 (326)
T ss_pred --CCCCEEEECCCccchhCcHHHHHHHHHHhCCccc------CCCEEEeccccC----CCCCEEEEECC-EEEEeCHHHh
Confidence 2345799999999999999999999999854321 344677898765 79999999987 9999999999
Q ss_pred EEecCC-CCeEE-EEEEccC-----CCceeechhhhcceEEEEECCCCEEEEecC
Q 047535 324 FIPPPV-EGVFC-FAMQPID-----GDVGIFGNFAQSDLFIGYDFDSQMVSFKPT 371 (376)
Q Consensus 324 ~~~~~~-~~~~C-~~i~~~~-----~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~ 371 (376)
+++... .+..| ++++..+ .+.||||++|||++|+|||++++|||||++
T Consensus 272 i~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 272 VLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 987652 24577 5677532 358999999999999999999999999985
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.7e-54 Score=414.64 Aligned_cols=312 Identities=21% Similarity=0.312 Sum_probs=252.6
Q ss_pred cCCCCcceeccccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCccc
Q 047535 6 YFYPNNVVQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQC 85 (376)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c 85 (376)
|+..++..+++.+..+.+|+++|+||||+| ++.|+|||||+++||++..|..|.|+.++.|||++|+||+..+
T Consensus 122 ~~~~~~~~v~L~n~~n~~Y~~~I~IGTP~Q-~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~------ 194 (453)
T PTZ00147 122 YLGSEFDNVELKDLANVMSYGEAKLGDNGQ-KFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG------ 194 (453)
T ss_pred cccCCCCeeeccccCCCEEEEEEEECCCCe-EEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC------
Confidence 344446667777888999999999999999 9999999999999999999998888889999999999999877
Q ss_pred CCCCCCCCCCCCCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCC---CC-CCCcceEeecCCCCCh-
Q 047535 86 HLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG---VF-NENEMGLVGLGRTRLS- 160 (376)
Q Consensus 86 ~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGL~~~~~s- 160 (376)
+.+++.|++|+. .|.++.|+|++++ .+++ ..|+++....+ .+ ...+|||||||++..+
T Consensus 195 -------------~~f~i~Yg~Gsv-sG~~~~DtVtiG~--~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~ 257 (453)
T PTZ00147 195 -------------TKVEMNYVSGTV-SGFFSKDLVTIGN--LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSI 257 (453)
T ss_pred -------------CEEEEEeCCCCE-EEEEEEEEEEECC--EEEE-EEEEEEEeccCcccccccccccceecccCCcccc
Confidence 689999999986 7999999999999 7787 57888776543 12 3468999999997543
Q ss_pred -----HHHHHHhh--cCCCeEEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCCCceEEEEEeeEEecCCCC
Q 047535 161 -----LASQILSQ--LGANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKEDKTYYFVTLEGISVGNLSN 232 (376)
Q Consensus 161 -----~~~ql~~~--~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~ 232 (376)
++.+|..+ +..++||+||.... ...|.|+|||.|+.+. +++.|+|+.. ..+|.|.++ +.+++
T Consensus 258 ~~~~p~~~~L~~qg~I~~~vFS~~L~~~~---~~~G~L~fGGiD~~ky~G~l~y~pl~~---~~~W~V~l~-~~vg~--- 327 (453)
T PTZ00147 258 GSVDPYVVELKNQNKIEQAVFTFYLPPED---KHKGYLTIGGIEERFYEGPLTYEKLNH---DLYWQVDLD-VHFGN--- 327 (453)
T ss_pred ccCCCHHHHHHHcCCCCccEEEEEecCCC---CCCeEEEECCcChhhcCCceEEEEcCC---CceEEEEEE-EEECC---
Confidence 45566665 66789999997542 2469999999876654 4499999975 669999998 46766
Q ss_pred ceeeEeccCCCCccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecC
Q 047535 233 SSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDG 312 (376)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g 312 (376)
... ....++|||||+++++|++.++++.+++.+.. ......+..+|+. . .+|+|+|.|++
T Consensus 328 --~~~---------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~----~~~~~~y~~~C~~-~----~lP~~~f~f~g 387 (453)
T PTZ00147 328 --VSS---------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK----VPFLPLYVTTCNN-T----KLPTLEFRSPN 387 (453)
T ss_pred --Eec---------CceeEEECCCCchhcCCHHHHHHHHHHhCCee----cCCCCeEEEeCCC-C----CCCeEEEEECC
Confidence 321 24579999999999999999999999875321 1112335567885 2 78999999998
Q ss_pred CceEEECCCceEEecCC-CCeEEE-EEEccC--CCceeechhhhcceEEEEECCCCEEEEecCC
Q 047535 313 GAKVPLIHTSTFIPPPV-EGVFCF-AMQPID--GDVGIFGNFAQSDLFIGYDFDSQMVSFKPTD 372 (376)
Q Consensus 313 ~~~~~i~~~~y~~~~~~-~~~~C~-~i~~~~--~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~~ 372 (376)
..++|+|++|+.+... ....|+ ++++.+ .+.||||++|||++|+|||.+++|||||+++
T Consensus 388 -~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 388 -KVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred -EEEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9999999999976432 335785 687654 4589999999999999999999999999987
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.2e-54 Score=402.08 Aligned_cols=297 Identities=20% Similarity=0.337 Sum_probs=242.7
Q ss_pred ccccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCC-CCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCC
Q 047535 15 SNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCV-QCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSC 93 (376)
Q Consensus 15 ~~~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~-~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c 93 (376)
++.+..+.+|+++|.||||+| ++.|+|||||+++||++..|. ...|..++.|+|++|+||+...
T Consensus 2 ~l~n~~~~~Y~~~i~iGtP~Q-~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 2 ALKNYLDAQYFGEIGIGTPPQ-KFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred cccccCCCEEEEEEEECCCCe-EEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCC--------------
Confidence 455778899999999999999 999999999999999999996 2234567899999999998876
Q ss_pred CCCCCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCC-CC-CCCcceEeecCCCCCh------HHHHH
Q 047535 94 SSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG-VF-NENEMGLVGLGRTRLS------LASQI 165 (376)
Q Consensus 94 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGL~~~~~s------~~~ql 165 (376)
..+.+.|++|+. .|.+++|+|++++ .+++++.||+++.... .+ ...++||||||+...+ ++.+|
T Consensus 67 -----~~~~i~Yg~G~~-~G~~~~D~v~ig~--~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 138 (317)
T cd06098 67 -----TSASIQYGTGSI-SGFFSQDSVTVGD--LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNM 138 (317)
T ss_pred -----CEEEEEcCCceE-EEEEEeeEEEECC--EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHH
Confidence 689999999987 7999999999999 8899999999987654 34 5568999999986433 44566
Q ss_pred Hhh--cCCCeEEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCC
Q 047535 166 LSQ--LGANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNS 242 (376)
Q Consensus 166 ~~~--~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~ 242 (376)
.++ +..++||+||..... ....|.|+|||.|..+. +++.|+|+.. ..+|.|.+++|+|++ +.+...
T Consensus 139 ~~qg~i~~~~FS~~L~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~pv~~---~~~w~v~l~~i~v~g-----~~~~~~-- 207 (317)
T cd06098 139 VEQGLVKEPVFSFWLNRNPD-EEEGGELVFGGVDPKHFKGEHTYVPVTR---KGYWQFEMGDVLIGG-----KSTGFC-- 207 (317)
T ss_pred HhcCCCCCCEEEEEEecCCC-CCCCcEEEECccChhhcccceEEEecCc---CcEEEEEeCeEEECC-----EEeeec--
Confidence 665 667899999975321 23579999999876655 4499999976 569999999999999 766542
Q ss_pred CCccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCc
Q 047535 243 SGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTS 322 (376)
Q Consensus 243 ~~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~ 322 (376)
.....++|||||+++++|++++++|. +..+|+... .+|.|+|.|+| ..++|+|++
T Consensus 208 ---~~~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~~----~~P~i~f~f~g-~~~~l~~~~ 262 (317)
T cd06098 208 ---AGGCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSLS----SMPNVSFTIGG-KTFELTPEQ 262 (317)
T ss_pred ---CCCcEEEEecCCcceeCCHHHHHhhh-----------------ccCCccccc----cCCcEEEEECC-EEEEEChHH
Confidence 23467999999999999998766543 345788655 79999999987 999999999
Q ss_pred eEEecCC-CCeEEE-EEEccC-----CCceeechhhhcceEEEEECCCCEEEEec
Q 047535 323 TFIPPPV-EGVFCF-AMQPID-----GDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 323 y~~~~~~-~~~~C~-~i~~~~-----~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
|+.+... ....|+ +++..+ ...||||++|||++|+|||++++|||||+
T Consensus 263 yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 263 YILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred eEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 9987542 235785 566432 35799999999999999999999999996
No 12
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.2e-53 Score=396.46 Aligned_cols=294 Identities=38% Similarity=0.672 Sum_probs=239.6
Q ss_pred eEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCeee
Q 047535 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNYT 102 (376)
Q Consensus 23 ~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 102 (376)
+|+++|.|||||| ++.|+|||||+++||+|..| |.|.
T Consensus 1 ~Y~~~i~iGtP~q-~~~v~~DTGSs~~Wv~c~~c------------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPAR-DQTVIVDTGSDLTWVQCQPC------------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCc-ceEEEecCCCCcccccCCCC------------------------------------------Ceee
Confidence 5999999999999 99999999999999987644 2689
Q ss_pred EEeCCCCeeeEEEEEEEEEecCCCC-CcccEEEeeeeCCCCCCCCCcceEeecCCCCChHHHHHHhhcCCCeEEEecCCC
Q 047535 103 YGYADSSLTKGVLATERITFGNSNN-FFDNVVFGCGHNNTGVFNENEMGLVGLGRTRLSLASQILSQLGANKFSYCLVPF 181 (376)
Q Consensus 103 ~~Y~~g~~~~G~~~~D~v~i~~~~~-~~~~~~fg~~~~~~~~~~~~~~GilGL~~~~~s~~~ql~~~~~~~~fs~~l~~~ 181 (376)
+.|++|+.+.|.+++|+|+|++ . .++++.|||+....+.+. ..+||||||+...+++.|+..+. .++||+||...
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~ig~--~~~~~~~~Fg~~~~~~~~~~-~~~GilGLg~~~~s~~~ql~~~~-~~~FS~~L~~~ 113 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTLGS--SDVVPGFAFGCGHDNEGLFG-GAAGLLGLGRGKLSLPSQTASSY-GGVFSYCLPDR 113 (299)
T ss_pred eEeCCCceEEEEEEEEEEEeCC--CCccCCEEEECCccCCCccC-CCCEEEECCCCcchHHHHhhHhh-cCceEEEccCC
Confidence 9999999878999999999998 6 789999999988766443 68999999999999999887664 46999999864
Q ss_pred CCCCCccceEEECCCCcccCCCceeeeeecCCC-CceEEEEEeeEEecCCCCceeeEeccCCCCccCCCceEEecCCCCc
Q 047535 182 HTDSSITSKMYFGNGSEVSGGGVVSTSLVSKED-KTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPT 260 (376)
Q Consensus 182 ~~~~~~~G~l~~Gg~~~~~~~~~~~~p~~~~~~-~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~i 260 (376)
. ....|+|+|||.|.. .+++.|+|++..+. ..+|.|.+++|+|++ +.+...... .....++|||||+++
T Consensus 114 ~--~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~-----~~~~~~~~~--~~~~~~ivDSGTt~~ 183 (299)
T cd05472 114 S--SSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGG-----RRLPIPPAS--FGAGGVIIDSGTVIT 183 (299)
T ss_pred C--CCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECC-----EECCCCccc--cCCCCeEEeCCCcce
Confidence 2 245799999998776 55699999987542 468999999999999 776643211 245689999999999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCC-CCCCCeEEEEecCCceEEECCCceEEecCCCCeEEEEEEc
Q 047535 261 LLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSM-AGIAPILTAHFDGGAKVPLIHTSTFIPPPVEGVFCFAMQP 339 (376)
Q Consensus 261 ~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~~~~~C~~i~~ 339 (376)
+||+++|++|.++|.+.............+..|+..+.. ...+|+|+|.|+++..+.|+|++|+......+..|+++..
T Consensus 184 ~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~ 263 (299)
T cd05472 184 RLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAG 263 (299)
T ss_pred ecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeC
Confidence 999999999999998765422111111223358765432 2389999999985599999999999843325678998887
Q ss_pred cC--CCceeechhhhcceEEEEECCCCEEEEecCCC
Q 047535 340 ID--GDVGIFGNFAQSDLFIGYDFDSQMVSFKPTDC 373 (376)
Q Consensus 340 ~~--~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~~c 373 (376)
.. ...||||+.|||++|+|||++++|||||+++|
T Consensus 264 ~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 264 TSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 53 46799999999999999999999999999999
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.7e-54 Score=403.09 Aligned_cols=307 Identities=21% Similarity=0.349 Sum_probs=252.0
Q ss_pred ccccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCC--CCCCCCCCCCCCCCcccccCCCCcccCCCCCCC
Q 047535 15 SNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQC--YKQVKPIYNPASSSSYKELSCQSEQCHLLDTVS 92 (376)
Q Consensus 15 ~~~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c--~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~ 92 (376)
++.+..+.+|+++|+||||+| ++.|+|||||+++||++..|..| .|..++.|||++|+|++...
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q-~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~------------- 68 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQ-SFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG------------- 68 (329)
T ss_pred cceeccCCeEEEEEEECCCCc-EEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC-------------
Confidence 456778899999999999999 99999999999999999999743 45567899999999999877
Q ss_pred CCCCCCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCC-CC-CCCcceEeecCCCCCh------HHHH
Q 047535 93 CSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG-VF-NENEMGLVGLGRTRLS------LASQ 164 (376)
Q Consensus 93 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGL~~~~~s------~~~q 164 (376)
|.+.+.|++|+. .|.++.|++++++ .+++++.||++....+ .+ ....+||||||+...+ ++.+
T Consensus 69 ------~~~~i~Y~~g~~-~G~~~~D~v~ig~--~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~ 139 (329)
T cd05485 69 ------TEFAIQYGSGSL-SGFLSTDTVSVGG--VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYN 139 (329)
T ss_pred ------eEEEEEECCceE-EEEEecCcEEECC--EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHH
Confidence 689999999986 7999999999999 8899999999987654 23 4568999999997544 4567
Q ss_pred HHhh--cCCCeEEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccC
Q 047535 165 ILSQ--LGANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYN 241 (376)
Q Consensus 165 l~~~--~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ 241 (376)
|.++ +..++||+||..... ....|+|+|||.|..+. +++.|+|+.. +.+|.|.++++++++ +.+.
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~v~~~~i~v~~-----~~~~--- 207 (329)
T cd05485 140 MVNQKLVDAPVFSFYLNRDPS-AKEGGELILGGSDPKHYTGNFTYLPVTR---KGYWQFKMDSVSVGE-----GEFC--- 207 (329)
T ss_pred HHhCCCCCCCEEEEEecCCCC-CCCCcEEEEcccCHHHcccceEEEEcCC---ceEEEEEeeEEEECC-----eeec---
Confidence 7665 567899999985432 22469999999776554 4599999976 679999999999999 6554
Q ss_pred CCCccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCC
Q 047535 242 SSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHT 321 (376)
Q Consensus 242 ~~~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~ 321 (376)
..+..++|||||+++++|++++++|.+++.+.. .. ...+.++|...+ ++|+|+|.|++ ..+.|+|+
T Consensus 208 ----~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~----~~-~~~~~~~C~~~~----~~p~i~f~fgg-~~~~i~~~ 273 (329)
T cd05485 208 ----SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP----II-GGEYMVNCSAIP----SLPDITFVLGG-KSFSLTGK 273 (329)
T ss_pred ----CCCcEEEEccCCcceeCCHHHHHHHHHHhCCcc----cc-CCcEEEeccccc----cCCcEEEEECC-EEeEEChH
Confidence 234579999999999999999999998875421 11 234667888655 78999999988 99999999
Q ss_pred ceEEecCC-CCeEEE-EEEccC-----CCceeechhhhcceEEEEECCCCEEEEec
Q 047535 322 STFIPPPV-EGVFCF-AMQPID-----GDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 322 ~y~~~~~~-~~~~C~-~i~~~~-----~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
+|+.+... +...|+ +++..+ .+.||||++|||++|+|||++++|||||.
T Consensus 274 ~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 274 DYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred HeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 99988653 235785 566432 45799999999999999999999999984
No 14
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.1e-54 Score=401.72 Aligned_cols=302 Identities=24% Similarity=0.375 Sum_probs=249.2
Q ss_pred ccccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCC
Q 047535 15 SNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCS 94 (376)
Q Consensus 15 ~~~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~ 94 (376)
++.+..+..|+++|.||||+| ++.|+|||||+++||++..|..+.|..++.|+|++|+||+...
T Consensus 2 ~l~n~~~~~Y~~~i~iGtp~q-~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~--------------- 65 (320)
T cd05488 2 PLTNYLNAQYFTDITLGTPPQ-KFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG--------------- 65 (320)
T ss_pred cccccCCCEEEEEEEECCCCc-EEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC---------------
Confidence 345567889999999999999 9999999999999999999997777778899999999998866
Q ss_pred CCCCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCC-C-CCCcceEeecCCCCChH------HHHHH
Q 047535 95 SQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGV-F-NENEMGLVGLGRTRLSL------ASQIL 166 (376)
Q Consensus 95 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGL~~~~~s~------~~ql~ 166 (376)
|.+.+.|++|+. .|.+++|++++++ +.++++.|++++...+. + ....+||||||+...+. +.++.
T Consensus 66 ----~~~~~~y~~g~~-~G~~~~D~v~ig~--~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 138 (320)
T cd05488 66 ----TEFKIQYGSGSL-EGFVSQDTLSIGD--LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMI 138 (320)
T ss_pred ----CEEEEEECCceE-EEEEEEeEEEECC--EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHH
Confidence 689999999986 7999999999999 88999999999877553 3 44679999999975432 33454
Q ss_pred hh--cCCCeEEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCC
Q 047535 167 SQ--LGANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSS 243 (376)
Q Consensus 167 ~~--~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~ 243 (376)
.+ +..++||+||.... ...|.|+|||.|..+. +++.|+|+.. ..+|.|.+++|+|++ +.+..
T Consensus 139 ~qg~i~~~~FS~~L~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~w~v~l~~i~vg~-----~~~~~---- 203 (320)
T cd05488 139 NQGLLDEPVFSFYLGSSE---EDGGEATFGGIDESRFTGKITWLPVRR---KAYWEVELEKIGLGD-----EELEL---- 203 (320)
T ss_pred hcCCCCCCEEEEEecCCC---CCCcEEEECCcCHHHcCCceEEEeCCc---CcEEEEEeCeEEECC-----EEecc----
Confidence 44 66789999998652 2469999999876554 4599999986 569999999999999 76653
Q ss_pred CccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCce
Q 047535 244 GAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTST 323 (376)
Q Consensus 244 ~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y 323 (376)
....++|||||+++++|++++++|.+++.+... ....+..+|.... .+|.|+|.|++ ..+.|+|++|
T Consensus 204 ---~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~~----~~P~i~f~f~g-~~~~i~~~~y 270 (320)
T cd05488 204 ---ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-----WNGQYTVDCSKVD----SLPDLTFNFDG-YNFTLGPFDY 270 (320)
T ss_pred ---CCCeEEEcCCcccccCCHHHHHHHHHHhCCccc-----cCCcEEeeccccc----cCCCEEEEECC-EEEEECHHHh
Confidence 235799999999999999999999888753221 2334556788655 79999999987 9999999999
Q ss_pred EEecCCCCeEEE-EEEccC-----CCceeechhhhcceEEEEECCCCEEEEec
Q 047535 324 FIPPPVEGVFCF-AMQPID-----GDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 324 ~~~~~~~~~~C~-~i~~~~-----~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
+.+.. ..|+ .+...+ .+.||||++|||++|+|||.+++|||||+
T Consensus 271 ~~~~~---g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 271 TLEVS---GSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred eecCC---CeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 98643 3685 455432 34799999999999999999999999996
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.8e-53 Score=409.11 Aligned_cols=313 Identities=20% Similarity=0.324 Sum_probs=252.7
Q ss_pred CcCCCCcceeccccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcc
Q 047535 5 TYFYPNNVVQSNVSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQ 84 (376)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~ 84 (376)
.++.+++..+++.+..+.+|+++|.||||+| ++.|+|||||+++||++..|..+.|+.++.|+|++|+||+..+
T Consensus 120 ~~~~~~~~~~~l~d~~n~~Yy~~i~IGTP~Q-~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~----- 193 (450)
T PTZ00013 120 NYLGSENDVIELDDVANIMFYGEGEVGDNHQ-KFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG----- 193 (450)
T ss_pred cccccCCCceeeeccCCCEEEEEEEECCCCe-EEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC-----
Confidence 4555667777888888899999999999999 9999999999999999999997778888999999999998877
Q ss_pred cCCCCCCCCCCCCCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCC---CC-CCCcceEeecCCCCC-
Q 047535 85 CHLLDTVSCSSQQLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG---VF-NENEMGLVGLGRTRL- 159 (376)
Q Consensus 85 c~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGL~~~~~- 159 (376)
+.+.+.|++|++ .|.++.|+|++++ ++++ ..|+++..... .+ ...+|||||||++..
T Consensus 194 --------------~~~~i~YG~Gsv-~G~~~~Dtv~iG~--~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s 255 (450)
T PTZ00013 194 --------------TKVDITYGSGTV-KGFFSKDLVTLGH--LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLS 255 (450)
T ss_pred --------------cEEEEEECCceE-EEEEEEEEEEECC--EEEc-cEEEEEEeccccccceecccccceecccCCccc
Confidence 689999999986 8999999999999 7777 57887765432 23 346899999998743
Q ss_pred -----hHHHHHHhh--cCCCeEEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCCCceEEEEEeeEEecCCC
Q 047535 160 -----SLASQILSQ--LGANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKEDKTYYFVTLEGISVGNLS 231 (376)
Q Consensus 160 -----s~~~ql~~~--~~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~ 231 (376)
+++.+|..+ +..++||+||.... ...|.|+|||.|..++ +++.|+|+.. ..+|.|.++ +.++.
T Consensus 256 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~---~~~G~L~fGGiD~~~y~G~L~y~pv~~---~~yW~I~l~-v~~G~-- 326 (450)
T PTZ00013 256 IGSIDPIVVELKNQNKIDNALFTFYLPVHD---VHAGYLTIGGIEEKFYEGNITYEKLNH---DLYWQIDLD-VHFGK-- 326 (450)
T ss_pred cccCCCHHHHHHhccCcCCcEEEEEecCCC---CCCCEEEECCcCccccccceEEEEcCc---CceEEEEEE-EEECc--
Confidence 456677665 67789999997542 2469999999876655 4499999975 669999998 66655
Q ss_pred CceeeEeccCCCCccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEec
Q 047535 232 NSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFD 311 (376)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~ 311 (376)
... ....++|||||+++++|++.++++.+.+.... ......+..+|+. . .+|+|+|.|+
T Consensus 327 ---~~~---------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~----~~~~~~y~~~C~~-~----~lP~i~F~~~ 385 (450)
T PTZ00013 327 ---QTM---------QKANVIVDSGTTTITAPSEFLNKFFANLNVIK----VPFLPFYVTTCDN-K----EMPTLEFKSA 385 (450)
T ss_pred ---eec---------cccceEECCCCccccCCHHHHHHHHHHhCCee----cCCCCeEEeecCC-C----CCCeEEEEEC
Confidence 322 23579999999999999999999998875321 1122335667864 2 7899999999
Q ss_pred CCceEEECCCceEEecCC-CCeEE-EEEEccC--CCceeechhhhcceEEEEECCCCEEEEecCC
Q 047535 312 GGAKVPLIHTSTFIPPPV-EGVFC-FAMQPID--GDVGIFGNFAQSDLFIGYDFDSQMVSFKPTD 372 (376)
Q Consensus 312 g~~~~~i~~~~y~~~~~~-~~~~C-~~i~~~~--~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~~ 372 (376)
+ ..++|+|++|+.+... ++..| +++++.+ .+.||||++|||++|+|||.+++|||||+++
T Consensus 386 g-~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 386 N-NTYTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred C-EEEEECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 8 9999999999875321 34578 4676643 4689999999999999999999999999875
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2e-50 Score=384.37 Aligned_cols=319 Identities=18% Similarity=0.317 Sum_probs=238.3
Q ss_pred ceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCee
Q 047535 22 GEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNY 101 (376)
Q Consensus 22 ~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~ 101 (376)
-.|+++|.||||+| ++.|+|||||+++||++..|. ..++.|+|++|+||+..+ |.+
T Consensus 2 ~~Y~~~i~iGtP~Q-~~~v~~DTGSs~lWv~~~~~~----~~~~~f~~~~SsT~~~~~-------------------~~~ 57 (364)
T cd05473 2 QGYYIEMLIGTPPQ-KLNILVDTGSSNFAVAAAPHP----FIHTYFHRELSSTYRDLG-------------------KGV 57 (364)
T ss_pred CceEEEEEecCCCc-eEEEEEecCCcceEEEcCCCc----cccccCCchhCcCcccCC-------------------ceE
Confidence 36999999999999 999999999999999998763 346689999999999987 689
Q ss_pred eEEeCCCCeeeEEEEEEEEEecCCC-CCcccEEEeeeeCCCCCC--CCCcceEeecCCCCC--------hHHHHHHhhcC
Q 047535 102 TYGYADSSLTKGVLATERITFGNSN-NFFDNVVFGCGHNNTGVF--NENEMGLVGLGRTRL--------SLASQILSQLG 170 (376)
Q Consensus 102 ~~~Y~~g~~~~G~~~~D~v~i~~~~-~~~~~~~fg~~~~~~~~~--~~~~~GilGL~~~~~--------s~~~ql~~~~~ 170 (376)
++.|++|+. .|.+++|+|+|++.. ..+ .+.|+++......+ ....+||||||+... +++.+|.++..
T Consensus 58 ~i~Yg~Gs~-~G~~~~D~v~ig~~~~~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~ 135 (364)
T cd05473 58 TVPYTQGSW-EGELGTDLVSIPKGPNVTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTG 135 (364)
T ss_pred EEEECcceE-EEEEEEEEEEECCCCccce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccC
Confidence 999999987 799999999998621 111 12345555444433 235799999998643 35556666532
Q ss_pred -CCeEEEecCCCC----C--CCCccceEEECCCCcccCC-CceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCC
Q 047535 171 -ANKFSYCLVPFH----T--DSSITSKMYFGNGSEVSGG-GVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNS 242 (376)
Q Consensus 171 -~~~fs~~l~~~~----~--~~~~~G~l~~Gg~~~~~~~-~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~ 242 (376)
.++|+++|.... . .....|.|+|||+|..+.. ++.|+|+.. ..+|.|.+++|+|++ +.+.....
T Consensus 136 ~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~---~~~~~v~l~~i~vg~-----~~~~~~~~ 207 (364)
T cd05473 136 IPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE---EWYYEVIILKLEVGG-----QSLNLDCK 207 (364)
T ss_pred CccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc---ceeEEEEEEEEEECC-----Eecccccc
Confidence 468999875321 1 1234799999997765544 499999987 669999999999999 77664321
Q ss_pred CCccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCC--CCCccceeecCCC-CCCCCeEEEEecCC-----c
Q 047535 243 SGAISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDP--RLGSQLCYKTPSM-AGIAPILTAHFDGG-----A 314 (376)
Q Consensus 243 ~~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~--~~~~~~C~~~~~~-~~~~P~i~f~~~g~-----~ 314 (376)
. .....++|||||++++||++++++|.++|.+.......... ..+...|+..... ...+|+|+|.|++. .
T Consensus 208 ~--~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~ 285 (364)
T cd05473 208 E--YNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSF 285 (364)
T ss_pred c--ccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceE
Confidence 1 01236999999999999999999999999876532211111 1223578865421 22699999999862 3
Q ss_pred eEEECCCceEEecCC--CCeEEEEEEcc-CCCceeechhhhcceEEEEECCCCEEEEecCCCCCC
Q 047535 315 KVPLIHTSTFIPPPV--EGVFCFAMQPI-DGDVGIFGNFAQSDLFIGYDFDSQMVSFKPTDCTKQ 376 (376)
Q Consensus 315 ~~~i~~~~y~~~~~~--~~~~C~~i~~~-~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~~c~~~ 376 (376)
.+.|+|++|+..... ....|+++... ..+.||||+.|||++|+|||.+++|||||+++|+++
T Consensus 286 ~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 286 RITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred EEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 689999999986431 24578643322 246799999999999999999999999999999863
No 17
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.6e-50 Score=365.23 Aligned_cols=258 Identities=48% Similarity=0.825 Sum_probs=220.0
Q ss_pred eEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCeee
Q 047535 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNYT 102 (376)
Q Consensus 23 ~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 102 (376)
+|+++|+||||+| ++.|+|||||+++||+| | .+.
T Consensus 1 ~Y~~~i~iGtP~q-~~~v~~DTGSs~~wv~~--------------------------~-------------------~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQ-PFSLIVDTGSDLTWTQC--------------------------C-------------------SYE 34 (265)
T ss_pred CeEEEEecCCCCc-ceEEEecCCCCCEEEcC--------------------------C-------------------ceE
Confidence 5999999999999 99999999999999985 1 578
Q ss_pred EEeCCCCeeeEEEEEEEEEecCCCC--CcccEEEeeeeCCCCCCCCCcceEeecCCCCChHHHHHHhhcCCCeEEEecCC
Q 047535 103 YGYADSSLTKGVLATERITFGNSNN--FFDNVVFGCGHNNTGVFNENEMGLVGLGRTRLSLASQILSQLGANKFSYCLVP 180 (376)
Q Consensus 103 ~~Y~~g~~~~G~~~~D~v~i~~~~~--~~~~~~fg~~~~~~~~~~~~~~GilGL~~~~~s~~~ql~~~~~~~~fs~~l~~ 180 (376)
+.|+||+.+.|.+++|++.+++ . +++++.|||+...........+||||||+...+++.|+..+. ++|++||..
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~g~--~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~--~~Fs~~l~~ 110 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTFGD--SSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG--NKFSYCLVP 110 (265)
T ss_pred eEeCCCceeeeeEEEEEEEecC--CCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc--CeeEEEccC
Confidence 8999988889999999999999 6 789999999998876335678999999999999999987655 699999986
Q ss_pred CCCCCCccceEEECCCCcccCCCceeeeeecCC-CCceEEEEEeeEEecCCCCceeeEeccCCCC---ccCCCceEEecC
Q 047535 181 FHTDSSITSKMYFGNGSEVSGGGVVSTSLVSKE-DKTYYFVTLEGISVGNLSNSSKLIPYYNSSG---AISKGNMFIDTG 256 (376)
Q Consensus 181 ~~~~~~~~G~l~~Gg~~~~~~~~~~~~p~~~~~-~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~---~~~~~~~iiDTG 256 (376)
.. +....|+|+|||.|....+++.|+|++..+ ...+|.|.+++|+|++ +.+.++.+.. ......++||||
T Consensus 111 ~~-~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~-----~~~~~~~~~~~~~~~~~~~ai~DTG 184 (265)
T cd05476 111 HD-DTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGG-----KRLPIPPSVFAIDSDGSGGTIIDSG 184 (265)
T ss_pred CC-CCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECC-----EEecCCchhcccccCCCCcEEEeCC
Confidence 42 234579999999776555569999998753 2468999999999999 7765432211 134678999999
Q ss_pred CCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEecCCCCeEEEE
Q 047535 257 APPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIPPPVEGVFCFA 336 (376)
Q Consensus 257 t~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~~~~~C~~ 336 (376)
|++++||++++ |.|+|.|+++..+.|++++|+.... .+.+|++
T Consensus 185 Ts~~~lp~~~~------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-~~~~C~~ 227 (265)
T cd05476 185 TTLTYLPDPAY------------------------------------PDLTLHFDGGADLELPPENYFVDVG-EGVVCLA 227 (265)
T ss_pred CcceEcCcccc------------------------------------CCEEEEECCCCEEEeCcccEEEECC-CCCEEEE
Confidence 99999999876 6999999955999999999999765 6679999
Q ss_pred EEcc-CCCceeechhhhcceEEEEECCCCEEEEecCCC
Q 047535 337 MQPI-DGDVGIFGNFAQSDLFIGYDFDSQMVSFKPTDC 373 (376)
Q Consensus 337 i~~~-~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~~c 373 (376)
+... ..+.||||++|||++|++||.+++|||||+++|
T Consensus 228 ~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 228 ILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 8876 467899999999999999999999999999999
No 18
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.9e-50 Score=369.75 Aligned_cols=266 Identities=23% Similarity=0.287 Sum_probs=222.3
Q ss_pred EEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCeeeE
Q 047535 24 YVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNYTY 103 (376)
Q Consensus 24 y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~ 103 (376)
|+++|+||||+| ++.|+|||||+++||++..|..|.|..++.|++++|+|++... .+.+.+
T Consensus 1 Y~~~i~vGtP~Q-~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~------------------~~~~~i 61 (278)
T cd06097 1 YLTPVKIGTPPQ-TLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP------------------GATWSI 61 (278)
T ss_pred CeeeEEECCCCc-EEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC------------------CcEEEE
Confidence 799999999999 9999999999999999999999999889999999999998753 168999
Q ss_pred EeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCC-CC-CCCcceEeecCCCCC---------hHHHHHHhhcCCC
Q 047535 104 GYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTG-VF-NENEMGLVGLGRTRL---------SLASQILSQLGAN 172 (376)
Q Consensus 104 ~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGL~~~~~---------s~~~ql~~~~~~~ 172 (376)
.|++|+.+.|.+++|+|++++ .+++++.||+++.... .+ ...++||||||++.. +++.++..++.++
T Consensus 62 ~Y~~G~~~~G~~~~D~v~ig~--~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (278)
T cd06097 62 SYGDGSSASGIVYTDTVSIGG--VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAP 139 (278)
T ss_pred EeCCCCeEEEEEEEEEEEECC--EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCc
Confidence 999998668999999999999 8899999999998765 33 457899999998643 4566677665578
Q ss_pred eEEEecCCCCCCCCccceEEECCCCcccCC-CceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCCccCCCce
Q 047535 173 KFSYCLVPFHTDSSITSKMYFGNGSEVSGG-GVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNM 251 (376)
Q Consensus 173 ~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~~-~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
+|+++|.. +..|.|+|||+|+.+.. ++.|+|+... ..+|.|.+++|+|++ +.... .....+
T Consensus 140 ~Fs~~l~~-----~~~G~l~fGg~D~~~~~g~l~~~pi~~~--~~~w~v~l~~i~v~~-----~~~~~------~~~~~~ 201 (278)
T cd06097 140 LFTADLRK-----AAPGFYTFGYIDESKYKGEISWTPVDNS--SGFWQFTSTSYTVGG-----DAPWS------RSGFSA 201 (278)
T ss_pred eEEEEecC-----CCCcEEEEeccChHHcCCceEEEEccCC--CcEEEEEEeeEEECC-----cceee------cCCceE
Confidence 99999974 24699999998765544 4999999863 459999999999998 63322 245689
Q ss_pred EEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEecCCCC
Q 047535 252 FIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIPPPVEG 331 (376)
Q Consensus 252 iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~~~ 331 (376)
+|||||+++++|.+++++|.+++.+ .........+.++|.. .+|+|+|.|
T Consensus 202 iiDSGTs~~~lP~~~~~~l~~~l~g---~~~~~~~~~~~~~C~~------~~P~i~f~~--------------------- 251 (278)
T cd06097 202 IADTGTTLILLPDAIVEAYYSQVPG---AYYDSEYGGWVFPCDT------TLPDLSFAV--------------------- 251 (278)
T ss_pred EeecCCchhcCCHHHHHHHHHhCcC---CcccCCCCEEEEECCC------CCCCEEEEE---------------------
Confidence 9999999999999999999988731 1111123445677775 489999999
Q ss_pred eEEEEEEccCCCceeechhhhcceEEEEECCCCEEEEec
Q 047535 332 VFCFAMQPIDGDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 332 ~~C~~i~~~~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
.||||++|||++|+|||++++|||||+
T Consensus 252 ------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999996
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.5e-49 Score=361.27 Aligned_cols=258 Identities=29% Similarity=0.533 Sum_probs=214.9
Q ss_pred ceEEEEEEeCCCCCceEEEEEeCCCCceeEeCC-CCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCe
Q 047535 22 GEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCL-PCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCN 100 (376)
Q Consensus 22 ~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~ 100 (376)
++|+++|.||||+| ++.|++||||+++||+|. .|..| . |.
T Consensus 1 ~~Y~~~i~iGtP~q-~~~v~~DTGS~~~Wv~c~~~c~~c-------------------~-------------------c~ 41 (273)
T cd05475 1 GYYYVTINIGNPPK-PYFLDIDTGSDLTWLQCDAPCTGC-------------------Q-------------------CD 41 (273)
T ss_pred CceEEEEEcCCCCe-eEEEEEccCCCceEEeCCCCCCCC-------------------c-------------------Cc
Confidence 57999999999999 999999999999999984 66665 1 68
Q ss_pred eeEEeCCCCeeeEEEEEEEEEecCCC--CCcccEEEeeeeCCCCCC---CCCcceEeecCCCCChHHHHHHhh--cCCCe
Q 047535 101 YTYGYADSSLTKGVLATERITFGNSN--NFFDNVVFGCGHNNTGVF---NENEMGLVGLGRTRLSLASQILSQ--LGANK 173 (376)
Q Consensus 101 ~~~~Y~~g~~~~G~~~~D~v~i~~~~--~~~~~~~fg~~~~~~~~~---~~~~~GilGL~~~~~s~~~ql~~~--~~~~~ 173 (376)
|++.|+|++.+.|.+++|+|+++..+ ..++++.|||+......+ ....+||||||+...++++||..+ + +++
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i-~~~ 120 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGII-KNV 120 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCc-Cce
Confidence 99999988777999999999996421 467899999998765432 446899999999999999999865 5 679
Q ss_pred EEEecCCCCCCCCccceEEECCCCcccCCCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCCccCCCceEE
Q 047535 174 FSYCLVPFHTDSSITSKMYFGNGSEVSGGGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFI 253 (376)
Q Consensus 174 fs~~l~~~~~~~~~~G~l~~Gg~~~~~~~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ii 253 (376)
|++||.. ...|.|+||+... +.+++.|+|+...+...+|.|++.+|+|++ +... .....++|
T Consensus 121 Fs~~l~~-----~~~g~l~~G~~~~-~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~-----~~~~-------~~~~~~iv 182 (273)
T cd05475 121 IGHCLSS-----NGGGFLFFGDDLV-PSSGVTWTPMRRESQKKHYSPGPASLLFNG-----QPTG-------GKGLEVVF 182 (273)
T ss_pred EEEEccC-----CCCeEEEECCCCC-CCCCeeecccccCCCCCeEEEeEeEEEECC-----EECc-------CCCceEEE
Confidence 9999975 2368999986432 334599999987533469999999999999 6332 24568999
Q ss_pred ecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCC---ceEEECCCceEEecCCC
Q 047535 254 DTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGG---AKVPLIHTSTFIPPPVE 330 (376)
Q Consensus 254 DTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~---~~~~i~~~~y~~~~~~~ 330 (376)
||||+++++|++.| +|+|+|.|++. +.++|+|++|+.... .
T Consensus 183 DTGTt~t~lp~~~y-----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~-~ 226 (273)
T cd05475 183 DSGSSYTYFNAQAY-----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE-K 226 (273)
T ss_pred ECCCceEEcCCccc-----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC-C
Confidence 99999999999765 47999999874 699999999998865 5
Q ss_pred CeEEEEEEccC----CCceeechhhhcceEEEEECCCCEEEEecCCC
Q 047535 331 GVFCFAMQPID----GDVGIFGNFAQSDLFIGYDFDSQMVSFKPTDC 373 (376)
Q Consensus 331 ~~~C~~i~~~~----~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~~c 373 (376)
+..|+++.... .+.||||+.|||++|+|||++++|||||+++|
T Consensus 227 ~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 227 GNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 67899887543 35799999999999999999999999999999
No 20
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.7e-50 Score=378.63 Aligned_cols=298 Identities=27% Similarity=0.461 Sum_probs=251.4
Q ss_pred eEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCC-CCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCee
Q 047535 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQC-YKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNY 101 (376)
Q Consensus 23 ~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c-~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~ 101 (376)
+|+++|+||||+| +++|++||||+.+||++..|..| .|..+..|++.+|+|++... +.+
T Consensus 1 ~Y~~~v~iGtp~q-~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~-------------------~~~ 60 (317)
T PF00026_consen 1 QYYINVTIGTPPQ-TFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG-------------------KPF 60 (317)
T ss_dssp EEEEEEEETTTTE-EEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-------------------EEE
T ss_pred CeEEEEEECCCCe-EEEEEEecccceeeeceeccccccccccccccccccccccccce-------------------eee
Confidence 5999999999999 99999999999999999999987 77788899999999999887 689
Q ss_pred eEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCC-C-CCCcceEeecCCC-------CChHHHHHHhh--cC
Q 047535 102 TYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGV-F-NENEMGLVGLGRT-------RLSLASQILSQ--LG 170 (376)
Q Consensus 102 ~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGL~~~-------~~s~~~ql~~~--~~ 170 (376)
.+.|++|+ +.|.+++|++.|++ +.++++.||++...... + ....+||||||++ ..+++.+|..+ +.
T Consensus 61 ~~~y~~g~-~~G~~~~D~v~ig~--~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~ 137 (317)
T PF00026_consen 61 SISYGDGS-VSGNLVSDTVSIGG--LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLIS 137 (317)
T ss_dssp EEEETTEE-EEEEEEEEEEEETT--EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSS
T ss_pred eeeccCcc-cccccccceEeeee--ccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcccc
Confidence 99999999 58999999999999 88999999999996542 3 5678999999964 35688888887 77
Q ss_pred CCeEEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCCccCCC
Q 047535 171 ANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKG 249 (376)
Q Consensus 171 ~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 249 (376)
.++|+++|.+.. ...|.|+|||.|..+. +++.|+|+.. ..+|.+.+.+|.+++ +.... ....
T Consensus 138 ~~~fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~~~~~---~~~w~v~~~~i~i~~-----~~~~~------~~~~ 200 (317)
T PF00026_consen 138 SNVFSLYLNPSD---SQNGSLTFGGYDPSKYDGDLVWVPLVS---SGYWSVPLDSISIGG-----ESVFS------SSGQ 200 (317)
T ss_dssp SSEEEEEEESTT---SSEEEEEESSEEGGGEESEEEEEEBSS---TTTTEEEEEEEEETT-----EEEEE------EEEE
T ss_pred ccccceeeeecc---cccchheeeccccccccCceeccCccc---ccccccccccccccc-----ccccc------ccce
Confidence 899999998764 4679999999776554 4499999995 679999999999999 62221 2345
Q ss_pred ceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEecCC
Q 047535 250 NMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIPPPV 329 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~ 329 (376)
.++||||++++.+|.+++++|++.|...... ..+.++|.... .+|.|+|.|++ .+++|+|++|+.+...
T Consensus 201 ~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------~~~~~~c~~~~----~~p~l~f~~~~-~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 201 QAILDTGTSYIYLPRSIFDAIIKALGGSYSD------GVYSVPCNSTD----SLPDLTFTFGG-VTFTIPPSDYIFKIED 269 (317)
T ss_dssp EEEEETTBSSEEEEHHHHHHHHHHHTTEEEC------SEEEEETTGGG----GSEEEEEEETT-EEEEEEHHHHEEEESS
T ss_pred eeecccccccccccchhhHHHHhhhcccccc------eeEEEeccccc----ccceEEEeeCC-EEEEecchHhcccccc
Confidence 7999999999999999999999998765432 45667787765 78999999998 9999999999988763
Q ss_pred C-CeEE-EEEEc----cCCCceeechhhhcceEEEEECCCCEEEEecC
Q 047535 330 E-GVFC-FAMQP----IDGDVGIFGNFAQSDLFIGYDFDSQMVSFKPT 371 (376)
Q Consensus 330 ~-~~~C-~~i~~----~~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~ 371 (376)
. ...| ++|.. .....+|||.+|||++|++||.+++|||||+|
T Consensus 270 ~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 270 GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 2 2377 56776 33678999999999999999999999999985
No 21
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.9e-48 Score=366.92 Aligned_cols=317 Identities=22% Similarity=0.389 Sum_probs=249.5
Q ss_pred eCCCCCce-EEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCC------------CCCCC
Q 047535 30 IGTPPLLD-IYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTV------------SCSSQ 96 (376)
Q Consensus 30 iGtp~q~~-~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~------------~c~~~ 96 (376)
+|||-. + +.|++||||+++||+|.+ .+|+||..++|+++.|...... .|. +
T Consensus 2 ~~~~~~-~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~-~ 65 (362)
T cd05489 2 TITPLK-GAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCG-N 65 (362)
T ss_pred cccCcc-CCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCC-C
Confidence 578877 6 899999999999998873 3688999999999999865432 342 3
Q ss_pred CCCeeeEE-eCCCCeeeEEEEEEEEEecCCC------CCcccEEEeeeeCCCC-CCCCCcceEeecCCCCChHHHHHHhh
Q 047535 97 QLCNYTYG-YADSSLTKGVLATERITFGNSN------NFFDNVVFGCGHNNTG-VFNENEMGLVGLGRTRLSLASQILSQ 168 (376)
Q Consensus 97 ~~~~~~~~-Y~~g~~~~G~~~~D~v~i~~~~------~~~~~~~fg~~~~~~~-~~~~~~~GilGL~~~~~s~~~ql~~~ 168 (376)
+.|.+... |++|+.+.|++++|+++++..+ .+++++.|||+..... .+...+|||||||+...|++.|+...
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 45878654 7789888999999999997421 2588999999988643 23445899999999999999998875
Q ss_pred c-CCCeEEEecCCCCCCCCccceEEECCCCcccC-------CCceeeeeecCCC-CceEEEEEeeEEecCCCCceeeEec
Q 047535 169 L-GANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-------GGVVSTSLVSKED-KTYYFVTLEGISVGNLSNSSKLIPY 239 (376)
Q Consensus 169 ~-~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-------~~~~~~p~~~~~~-~~~w~v~~~~i~v~~~~~~~~~~~~ 239 (376)
. .+++||+||.... +..|.|+||+.+.... +++.|+|++..+. ..+|.|++++|+|++ +.+.+
T Consensus 146 ~~~~~~FS~CL~~~~---~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~-----~~l~~ 217 (362)
T cd05489 146 FGVARKFALCLPSSP---GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNG-----HAVPL 217 (362)
T ss_pred cCCCcceEEEeCCCC---CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECC-----EECCC
Confidence 4 3579999998542 3469999999664332 4599999997642 468999999999999 88876
Q ss_pred cCCCC---ccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCC-CCCccceeecCC----C-CCCCCeEEEEe
Q 047535 240 YNSSG---AISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDP-RLGSQLCYKTPS----M-AGIAPILTAHF 310 (376)
Q Consensus 240 ~~~~~---~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~C~~~~~----~-~~~~P~i~f~~ 310 (376)
+.+.+ ......++|||||++++||+++|++|.++|.+++........ ......|+.... . ...+|.|+|+|
T Consensus 218 ~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f 297 (362)
T cd05489 218 NPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVL 297 (362)
T ss_pred CchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEE
Confidence 54322 123467999999999999999999999999887653222111 122257886432 1 23899999999
Q ss_pred cC-CceEEECCCceEEecCCCCeEEEEEEccC---CCceeechhhhcceEEEEECCCCEEEEecC
Q 047535 311 DG-GAKVPLIHTSTFIPPPVEGVFCFAMQPID---GDVGIFGNFAQSDLFIGYDFDSQMVSFKPT 371 (376)
Q Consensus 311 ~g-~~~~~i~~~~y~~~~~~~~~~C~~i~~~~---~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~ 371 (376)
+| |..+.|+|++|+++.. .+..|++|+..+ ...||||+.|||++|++||.+++|||||++
T Consensus 298 ~g~g~~~~l~~~ny~~~~~-~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 298 DGGGVNWTIFGANSMVQVK-GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eCCCeEEEEcCCceEEEcC-CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 87 7999999999999876 567899998754 357999999999999999999999999975
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.3e-47 Score=355.51 Aligned_cols=273 Identities=23% Similarity=0.414 Sum_probs=227.3
Q ss_pred eEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCeee
Q 047535 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNYT 102 (376)
Q Consensus 23 ~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 102 (376)
.|+++|.||||+| ++.|+|||||+++||+ .++
T Consensus 2 ~Y~~~i~iGtp~q-~~~v~~DTgS~~~wv~-----------------------------------------------~~~ 33 (295)
T cd05474 2 YYSAELSVGTPPQ-KVTVLLDTGSSDLWVP-----------------------------------------------DFS 33 (295)
T ss_pred eEEEEEEECCCCc-EEEEEEeCCCCcceee-----------------------------------------------eeE
Confidence 6999999999999 9999999999999998 267
Q ss_pred EEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCCCCCCcceEeecCCCCC-----------hHHHHHHhh--c
Q 047535 103 YGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVFNENEMGLVGLGRTRL-----------SLASQILSQ--L 169 (376)
Q Consensus 103 ~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGL~~~~~-----------s~~~ql~~~--~ 169 (376)
+.|++|+.+.|.+++|++++++ .+++++.|||++... ..+||||||+... +++.+|..+ +
T Consensus 34 ~~Y~~g~~~~G~~~~D~v~~g~--~~~~~~~fg~~~~~~-----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i 106 (295)
T cd05474 34 ISYGDGTSASGTWGTDTVSIGG--ATVKNLQFAVANSTS-----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLI 106 (295)
T ss_pred EEeccCCcEEEEEEEEEEEECC--eEecceEEEEEecCC-----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcc
Confidence 8899977668999999999999 789999999999843 3689999998764 688999876 6
Q ss_pred CCCeEEEecCCCCCCCCccceEEECCCCcccC-CCceeeeeecCCC---CceEEEEEeeEEecCCCCceeeEeccCCCCc
Q 047535 170 GANKFSYCLVPFHTDSSITSKMYFGNGSEVSG-GGVVSTSLVSKED---KTYYFVTLEGISVGNLSNSSKLIPYYNSSGA 245 (376)
Q Consensus 170 ~~~~fs~~l~~~~~~~~~~G~l~~Gg~~~~~~-~~~~~~p~~~~~~---~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~ 245 (376)
.+++|++||...+ ...|.|+|||+|..+. +.+.|+|+..... ..+|.|.+++|++++ +.+..+. .
T Consensus 107 ~~~~Fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~-----~~~~~~~---~ 175 (295)
T cd05474 107 KKNAYSLYLNDLD---ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNG-----SSGNTTL---L 175 (295)
T ss_pred cceEEEEEeCCCC---CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEc-----CCCcccc---c
Confidence 6789999998642 3469999999776544 4499999998642 279999999999999 5543211 1
Q ss_pred cCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEE
Q 047535 246 ISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFI 325 (376)
Q Consensus 246 ~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~ 325 (376)
.....++|||||++++||.+++++|++++.+.... ....+..+|+... + |.|+|.|+| ..++|++++|++
T Consensus 176 ~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~----~~~~~~~~C~~~~----~-p~i~f~f~g-~~~~i~~~~~~~ 245 (295)
T cd05474 176 SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS----DEGLYVVDCDAKD----D-GSLTFNFGG-ATISVPLSDLVL 245 (295)
T ss_pred CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC----CCcEEEEeCCCCC----C-CEEEEEECC-eEEEEEHHHhEe
Confidence 35678999999999999999999999998765431 1345677888765 5 999999998 999999999998
Q ss_pred ecCC---CCeEE-EEEEccCCCceeechhhhcceEEEEECCCCEEEEecC
Q 047535 326 PPPV---EGVFC-FAMQPIDGDVGIFGNFAQSDLFIGYDFDSQMVSFKPT 371 (376)
Q Consensus 326 ~~~~---~~~~C-~~i~~~~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~ 371 (376)
+... .+..| ++++..+.+.||||.+|||++|++||.+++|||||++
T Consensus 246 ~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 246 PASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred ccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 7642 24556 7888875578999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.8e-45 Score=337.65 Aligned_cols=271 Identities=30% Similarity=0.528 Sum_probs=227.0
Q ss_pred EEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCC--CCCCCCCcccccCCCCcccCCCCCCCCCCCCCCee
Q 047535 24 YVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPI--YNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNY 101 (376)
Q Consensus 24 y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~--y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~ 101 (376)
|+++|.||||+| +++|+|||||+.+||++..|..|.++.... |++..|+++.... |.+
T Consensus 1 Y~~~i~iGtp~q-~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~-------------------~~~ 60 (283)
T cd05471 1 YYGEITIGTPPQ-KFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTG-------------------CTF 60 (283)
T ss_pred CEEEEEECCCCc-EEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCC-------------------CEE
Confidence 789999999999 999999999999999999999988777665 7888888877665 799
Q ss_pred eEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCCC-CCCcceEeecCCCC------ChHHHHHHhh--cCCC
Q 047535 102 TYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVF-NENEMGLVGLGRTR------LSLASQILSQ--LGAN 172 (376)
Q Consensus 102 ~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGL~~~~------~s~~~ql~~~--~~~~ 172 (376)
++.|++|+. .|.++.|++++++ ..++++.|||++.....+ ....+||||||+.. .+++.||..+ +.++
T Consensus 61 ~~~Y~~g~~-~g~~~~D~v~~~~--~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~ 137 (283)
T cd05471 61 SITYGDGSV-TGGLGTDTVTIGG--LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSP 137 (283)
T ss_pred EEEECCCeE-EEEEEEeEEEECC--EEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCC
Confidence 999999877 7999999999999 778999999999987633 56789999999987 7899999987 5678
Q ss_pred eEEEecCCCCCCCCccceEEECCCCccc-CCCceeeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCCccCCCce
Q 047535 173 KFSYCLVPFHTDSSITSKMYFGNGSEVS-GGGVVSTSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNM 251 (376)
Q Consensus 173 ~fs~~l~~~~~~~~~~G~l~~Gg~~~~~-~~~~~~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
+|++||.... +....|.|+|||.+..+ .+++.|+|+.... ..+|.|.+++|++++ +.... ......+
T Consensus 138 ~Fs~~l~~~~-~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~-~~~~~v~l~~i~v~~-----~~~~~-----~~~~~~~ 205 (283)
T cd05471 138 VFSFYLGRDG-DGGNGGELTFGGIDPSKYTGDLTYTPVVSNG-PGYWQVPLDGISVGG-----KSVIS-----SSGGGGA 205 (283)
T ss_pred EEEEEEcCCC-CCCCCCEEEEcccCccccCCceEEEecCCCC-CCEEEEEeCeEEECC-----ceeee-----cCCCcEE
Confidence 9999998753 23467999999977653 4559999999862 559999999999999 53111 1356789
Q ss_pred EEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEecCCCC
Q 047535 252 FIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIPPPVEG 331 (376)
Q Consensus 252 iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~~~ 331 (376)
+||||+++++||++++++|++++.+.... ....+...|.... .+|.|+|+|
T Consensus 206 iiDsGt~~~~lp~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~----~~p~i~f~f--------------------- 256 (283)
T cd05471 206 IVDSGTSLIYLPSSVYDAILKALGAAVSS----SDGGYGVDCSPCD----TLPDITFTF--------------------- 256 (283)
T ss_pred EEecCCCCEeCCHHHHHHHHHHhCCcccc----cCCcEEEeCcccC----cCCCEEEEE---------------------
Confidence 99999999999999999999998765532 1222334444444 899999999
Q ss_pred eEEEEEEccCCCceeechhhhcceEEEEECCCCEEEEec
Q 047535 332 VFCFAMQPIDGDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 332 ~~C~~i~~~~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
.+|||.+|||++|++||.+++|||||+
T Consensus 257 ------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=9.9e-29 Score=208.03 Aligned_cols=158 Identities=44% Similarity=0.843 Sum_probs=129.1
Q ss_pred EEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCC--CC-CCCCCCe
Q 047535 24 YVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTV--SC-SSQQLCN 100 (376)
Q Consensus 24 y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~--~c-~~~~~~~ 100 (376)
|+++|.||||+| ++.|++||||+++|++| ..+.|+|++|+||+.+.|.+++|...+.. .| ..++.|.
T Consensus 1 Y~~~~~iGtP~~-~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQ-PFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTE-EEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCc-eEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 899999999999 99999999999999997 45689999999999999999999977643 33 3479999
Q ss_pred eeEEeCCCCeeeEEEEEEEEEecCCC---CCcccEEEeeeeCCCCCCCCCcceEeecCCCCChHHHHHHhhcCCCeEEEe
Q 047535 101 YTYGYADSSLTKGVLATERITFGNSN---NFFDNVVFGCGHNNTGVFNENEMGLVGLGRTRLSLASQILSQLGANKFSYC 177 (376)
Q Consensus 101 ~~~~Y~~g~~~~G~~~~D~v~i~~~~---~~~~~~~fg~~~~~~~~~~~~~~GilGL~~~~~s~~~ql~~~~~~~~fs~~ 177 (376)
+.+.|++++.+.|.+++|+++++... ..+.++.|||+....+.+. ..+||||||+...||+.||.++ ..++|++|
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~-~~~GilGLg~~~~Sl~sQl~~~-~~~~FSyC 148 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFY-GADGILGLGRGPLSLPSQLASS-SGNKFSYC 148 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSST-TEEEEEE-SSSTTSHHHHHHHH---SEEEEE
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCc-CCCcccccCCCcccHHHHHHHh-cCCeEEEE
Confidence 99999999999999999999998742 3467899999999886444 7899999999999999999888 66799999
Q ss_pred cCCCCCCCCccceEEECC
Q 047535 178 LVPFHTDSSITSKMYFGN 195 (376)
Q Consensus 178 l~~~~~~~~~~G~l~~Gg 195 (376)
|.+ .++...|.|+||+
T Consensus 149 L~~--~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 149 LPS--SSPSSSGFLSFGD 164 (164)
T ss_dssp B-S---SSSSEEEEEECS
T ss_pred CCC--CCCCCCEEEEeCc
Confidence 998 3346789999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=7.7e-24 Score=166.51 Aligned_cols=106 Identities=30% Similarity=0.615 Sum_probs=95.6
Q ss_pred EEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCC-CCCCCCcccccCCCCcccCCCCCCCCCCCCCCeeeEE
Q 047535 26 MKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIY-NPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNYTYG 104 (376)
Q Consensus 26 ~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y-~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~ 104 (376)
++|.||||+| ++.|+|||||+++||++..|+.|.++.++.| +|+.|++++... |.+.+.
T Consensus 1 ~~i~vGtP~q-~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~-------------------~~~~~~ 60 (109)
T cd05470 1 IEIGIGTPPQ-TFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG-------------------CTFSIT 60 (109)
T ss_pred CEEEeCCCCc-eEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC-------------------cEEEEE
Confidence 4799999999 9999999999999999999998888777667 999999998877 799999
Q ss_pred eCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCCC--CCCcceEeec
Q 047535 105 YADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVF--NENEMGLVGL 154 (376)
Q Consensus 105 Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGL 154 (376)
|++|+. .|.++.|+|+|++ ..++++.|||++...+.+ ....+|||||
T Consensus 61 Y~~g~~-~g~~~~D~v~ig~--~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 61 YGTGSL-SGGLSTDTVSIGD--IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred eCCCeE-EEEEEEEEEEECC--EEECCEEEEEEEecCCccccccccccccCC
Confidence 999987 6999999999999 889999999999987643 4568999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=2.3e-23 Score=175.26 Aligned_cols=148 Identities=34% Similarity=0.615 Sum_probs=118.5
Q ss_pred eEEEEEeeEEecCCCCceeeEeccCCCC--ccCCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCC---CCCCCCcc
Q 047535 217 YYFVTLEGISVGNLSNSSKLIPYYNSSG--AISKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPY---QDPRLGSQ 291 (376)
Q Consensus 217 ~w~v~~~~i~v~~~~~~~~~~~~~~~~~--~~~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~---~~~~~~~~ 291 (376)
+|.|++.+|+|++ +.+.++.+.+ ....+.++|||||++++||+++|+++.++|.+.+..... ......+.
T Consensus 1 ~Y~v~l~~Isvg~-----~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~ 75 (161)
T PF14541_consen 1 FYYVNLTGISVGG-----KRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFD 75 (161)
T ss_dssp SEEEEEEEEEETT-----EEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S
T ss_pred CccEEEEEEEECC-----EEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCC
Confidence 4899999999999 9998887643 235678999999999999999999999999998875432 23456778
Q ss_pred ceeecCC-----CCCCCCeEEEEecCCceEEECCCceEEecCCCCeEEEEEEcc---CCCceeechhhhcceEEEEECCC
Q 047535 292 LCYKTPS-----MAGIAPILTAHFDGGAKVPLIHTSTFIPPPVEGVFCFAMQPI---DGDVGIFGNFAQSDLFIGYDFDS 363 (376)
Q Consensus 292 ~C~~~~~-----~~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~~~~~C~~i~~~---~~~~~ilG~~fl~~~y~vFD~~~ 363 (376)
.|+..+. ....+|+|+|+|.+|+.++|++++|++... ++..|+++... .....|||..+|+++.++||.++
T Consensus 76 ~Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~ 154 (161)
T PF14541_consen 76 LCYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLEN 154 (161)
T ss_dssp -EEEGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTT
T ss_pred ceeeccccccccccccCCeEEEEEeCCcceeeeccceeeecc-CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCC
Confidence 9999887 234999999999987999999999999988 78999999988 47899999999999999999999
Q ss_pred CEEEEec
Q 047535 364 QMVSFKP 370 (376)
Q Consensus 364 ~rIGfa~ 370 (376)
+||||+|
T Consensus 155 ~~igF~~ 161 (161)
T PF14541_consen 155 GRIGFAP 161 (161)
T ss_dssp TEEEEEE
T ss_pred CEEEEeC
Confidence 9999986
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.33 E-value=1.9e-06 Score=65.29 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=67.8
Q ss_pred ceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCee
Q 047535 22 GEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNY 101 (376)
Q Consensus 22 ~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~ 101 (376)
+.|++++.|+. + +++++||||++.+|+.......+.. .+. .....
T Consensus 1 ~~~~v~v~i~~--~-~~~~llDTGa~~s~i~~~~~~~l~~----~~~----------------------------~~~~~ 45 (96)
T cd05483 1 GHFVVPVTING--Q-PVRFLLDTGASTTVISEELAERLGL----PLT----------------------------LGGKV 45 (96)
T ss_pred CcEEEEEEECC--E-EEEEEEECCCCcEEcCHHHHHHcCC----Ccc----------------------------CCCcE
Confidence 46899999994 8 9999999999999997652221110 000 01245
Q ss_pred eEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCCCCCCcceEeecCC
Q 047535 102 TYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVFNENEMGLVGLGR 156 (376)
Q Consensus 102 ~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGL~~ 156 (376)
.+...+|.........+.+++++ .+++++.+..+..... ..+||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~ig~--~~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQIGG--ITLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEECC--cEEeccEEEEeCCccc----CCceEeChHH
Confidence 66677777766677799999999 8888888887766543 4789999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.30 E-value=0.0015 Score=51.85 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=64.6
Q ss_pred ccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCC
Q 047535 19 TANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQL 98 (376)
Q Consensus 19 ~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~ 98 (376)
..+|.|++++.|.. + ++.++||||++.+.+....-..- ..++.. ..
T Consensus 7 ~~~g~~~v~~~InG--~-~~~flVDTGAs~t~is~~~A~~L------gl~~~~-------------------------~~ 52 (121)
T TIGR02281 7 DGDGHFYATGRVNG--R-NVRFLVDTGATSVALNEEDAQRL------GLDLNR-------------------------LG 52 (121)
T ss_pred cCCCeEEEEEEECC--E-EEEEEEECCCCcEEcCHHHHHHc------CCCccc-------------------------CC
Confidence 35689999999976 7 99999999999998865411000 011110 00
Q ss_pred CeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCCCCCCcceEeecC
Q 047535 99 CNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVFNENEMGLVGLG 155 (376)
Q Consensus 99 ~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGL~ 155 (376)
....+.=..|......+..|.+.+++ +.+.|+.+..+..... .+|+||+.
T Consensus 53 ~~~~~~ta~G~~~~~~~~l~~l~iG~--~~~~nv~~~v~~~~~~-----~~~LLGm~ 102 (121)
T TIGR02281 53 YTVTVSTANGQIKAARVTLDRVAIGG--IVVNDVDAMVAEGGAL-----SESLLGMS 102 (121)
T ss_pred ceEEEEeCCCcEEEEEEEeCEEEECC--EEEeCcEEEEeCCCcC-----CceEcCHH
Confidence 13344445566644567899999999 8899999877654322 36999995
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.92 E-value=0.0069 Score=44.84 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=55.9
Q ss_pred EEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCeeeEEe
Q 047535 26 MKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNYTYGY 105 (376)
Q Consensus 26 ~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~Y 105 (376)
+++.|+. + ++++++|||++.+.+......... ..+.... ....+.-
T Consensus 1 V~v~vng--~-~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~~-------------------------~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVNG--K-PVRFLIDTGASISVISRSLAKKLG------LKPRPKS-------------------------VPISVSG 46 (90)
T ss_pred CEEEECC--E-EEEEEEcCCCCcEEECHHHHHHcC------CCCcCCc-------------------------eeEEEEe
Confidence 3567775 7 999999999998888655221110 0110000 1233444
Q ss_pred CCCCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCCCCCCcceEeecC
Q 047535 106 ADSSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVFNENEMGLVGLG 155 (376)
Q Consensus 106 ~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGL~ 155 (376)
.+|.........+.+.+++ .++.++.|-.... ....+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~ig~--~~~~~~~~~v~~~-----~~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITIGG--ITLKNVPFLVVDL-----GDPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEECC--EEEEeEEEEEECC-----CCCCEEEeCCc
Confidence 5555555667777899999 7888888776662 22468999974
No 30
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=96.16 E-value=0.16 Score=47.41 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=59.6
Q ss_pred ceEEEEEEeCCCC----CceE-EEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCC
Q 047535 22 GEYVMKFSIGTPP----LLDI-YGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQ 96 (376)
Q Consensus 22 ~~y~~~i~iGtp~----q~~~-~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~ 96 (376)
+.=++.|+|=-|. | ++ +|+|||||.=|-|..+.-+.-. .... |..+..-..+. +|
T Consensus 22 N~p~VsVtVC~PGts~Cq-TIdnvlVDTGS~GLRi~~sAl~~~l---~~~L-p~~t~~g~~la----EC----------- 81 (370)
T PF11925_consen 22 NIPTVSVTVCAPGTSNCQ-TIDNVLVDTGSYGLRIFASALPSSL---AGSL-PQQTGGGAPLA----EC----------- 81 (370)
T ss_pred cceeeEEEEeCCCCCCce-eeCcEEEeccchhhhHHHhhhchhh---hccC-CcccCCCcchh----hh-----------
Confidence 3445666665553 5 66 8999999998888765210000 0000 11111111111 11
Q ss_pred CCCeeeEEeCCCCeeeEEEEEEEEEecCCC-CCcccEEEee----------eeCCC---CCCCCCcceEeecCCC
Q 047535 97 QLCNYTYGYADSSLTKGVLATERITFGNSN-NFFDNVVFGC----------GHNNT---GVFNENEMGLVGLGRT 157 (376)
Q Consensus 97 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~-~~~~~~~fg~----------~~~~~---~~~~~~~~GilGL~~~ 157 (376)
..|.+|..| |-+-+-.|+|+++. ..++-|.++- ..... ......+.||||+|.-
T Consensus 82 ------~~F~sgytW-GsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 ------AQFASGYTW-GSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred ------hhccCcccc-cceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 347888874 99999999999964 3333344432 11111 1125568999999864
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=96.09 E-value=0.023 Score=45.27 Aligned_cols=27 Identities=7% Similarity=-0.093 Sum_probs=24.2
Q ss_pred CCceeechhhhcceEEEEECCCCEEEE
Q 047535 342 GDVGIFGNFAQSDLFIGYDFDSQMVSF 368 (376)
Q Consensus 342 ~~~~ilG~~fl~~~y~vFD~~~~rIGf 368 (376)
....|||..||+.+-.+.|+.+.+|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 567899999999999999999998853
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.64 E-value=0.093 Score=41.75 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=57.5
Q ss_pred cCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCC
Q 047535 20 ANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLC 99 (376)
Q Consensus 20 ~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~ 99 (376)
....+++++.|+. + ++.++||||++..++....+..+.... ... .
T Consensus 13 ~~~~~~v~~~Ing--~-~~~~LvDTGAs~s~Is~~~a~~lgl~~------~~~--------------------------~ 57 (124)
T cd05479 13 KVPMLYINVEING--V-PVKAFVDSGAQMTIMSKACAEKCGLMR------LID--------------------------K 57 (124)
T ss_pred eeeEEEEEEEECC--E-EEEEEEeCCCceEEeCHHHHHHcCCcc------ccC--------------------------c
Confidence 4467899999986 7 889999999999999765333222110 000 1
Q ss_pred eeeE-EeCC-CCeeeEEEEEEEEEecCCCCCcccEEEeeeeCCCCCCCCCcceEeecC
Q 047535 100 NYTY-GYAD-SSLTKGVLATERITFGNSNNFFDNVVFGCGHNNTGVFNENEMGLVGLG 155 (376)
Q Consensus 100 ~~~~-~Y~~-g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGL~ 155 (376)
.+.+ ..+. +....|..-.+.+.+++ ..++ ..|...... ..|+|||+.
T Consensus 58 ~~~~~~~g~g~~~~~g~~~~~~l~i~~--~~~~-~~~~Vl~~~------~~d~ILG~d 106 (124)
T cd05479 58 RFQGIAKGVGTQKILGRIHLAQVKIGN--LFLP-CSFTVLEDD------DVDFLIGLD 106 (124)
T ss_pred ceEEEEecCCCcEEEeEEEEEEEEECC--EEee-eEEEEECCC------CcCEEecHH
Confidence 1221 2222 23345667777899999 5554 666655332 468999984
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.69 E-value=0.088 Score=42.55 Aligned_cols=29 Identities=21% Similarity=0.126 Sum_probs=26.8
Q ss_pred CCceeechhhhcceEEEEECCCCEEEEec
Q 047535 342 GDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 342 ~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
....|||.+||+.+..+-|+.+++|-|..
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 55799999999999999999999999975
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=92.38 E-value=0.44 Score=36.79 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.2
Q ss_pred CceeechhhhcceEEEEECCCCEE
Q 047535 343 DVGIFGNFAQSDLFIGYDFDSQMV 366 (376)
Q Consensus 343 ~~~ilG~~fl~~~y~vFD~~~~rI 366 (376)
+..+||..||+++-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999988753
No 35
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=91.83 E-value=0.32 Score=41.57 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=58.8
Q ss_pred ccccCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCC
Q 047535 17 VSTANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQ 96 (376)
Q Consensus 17 ~~~~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~ 96 (376)
....+|.|.++..|-. | .++++||||.+...+...+-. +-.++... ..
T Consensus 99 ak~~~GHF~a~~~VNG--k-~v~fLVDTGATsVal~~~dA~------RlGid~~~-l~---------------------- 146 (215)
T COG3577 99 AKSRDGHFEANGRVNG--K-KVDFLVDTGATSVALNEEDAR------RLGIDLNS-LD---------------------- 146 (215)
T ss_pred EecCCCcEEEEEEECC--E-EEEEEEecCcceeecCHHHHH------HhCCCccc-cC----------------------
Confidence 3346689999999987 7 999999999999988765211 11233321 11
Q ss_pred CCCeeeEEeCCCCeeeEEEEEEEEEecCCCCCcccEEEeee
Q 047535 97 QLCNYTYGYADSSLTKGVLATERITFGNSNNFFDNVVFGCG 137 (376)
Q Consensus 97 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~fg~~ 137 (376)
-+..+.=.+|...-..+-.|.+.||+ +.++++.--.+
T Consensus 147 --y~~~v~TANG~~~AA~V~Ld~v~IG~--I~~~nV~A~V~ 183 (215)
T COG3577 147 --YTITVSTANGRARAAPVTLDRVQIGG--IRVKNVDAMVA 183 (215)
T ss_pred --CceEEEccCCccccceEEeeeEEEcc--EEEcCchhhee
Confidence 24455556777766789999999999 77777654443
No 36
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=91.51 E-value=1.2 Score=32.66 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.3
Q ss_pred EEeCCCCCceEEEEEeCCCCceeEeCCC
Q 047535 28 FSIGTPPLLDIYGIVDTGSDLMWVQCLP 55 (376)
Q Consensus 28 i~iGtp~q~~~~l~~DTGSs~~wv~~~~ 55 (376)
+.|.. + ++.+++|||++.+.+....
T Consensus 3 v~InG--~-~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 3 ITVEG--V-PIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEECC--E-EEEEEEECCCCeEEECHHH
Confidence 44544 6 8999999999999998763
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.36 E-value=0.23 Score=36.96 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=24.7
Q ss_pred EEEEEEeCCCCCceEEEEEeCCCCceeEeCC
Q 047535 24 YVMKFSIGTPPLLDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 24 y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~ 54 (376)
|++++.|+. + ++.+++||||+..++...
T Consensus 1 ~~~~~~Ing--~-~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--K-PLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--E-EEEEEEcCCcceEEeCHH
Confidence 578899987 7 899999999999999765
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.06 E-value=0.72 Score=32.68 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=29.5
Q ss_pred cCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCC
Q 047535 20 ANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPC 56 (376)
Q Consensus 20 ~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C 56 (376)
..+.+++++.||. + .+.+++|||++..+|+...+
T Consensus 5 ~~g~~~v~~~I~g--~-~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--V-QVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--E-EEEEEEeCCCcceecCHHHH
Confidence 4588999999998 7 89999999999999977643
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.09 E-value=2.3 Score=33.57 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=27.1
Q ss_pred CceEEEEEeeEEecCCCCceeeEeccCCCCccCCCceEEecCCCCccccHHHHHHH
Q 047535 215 KTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFYNRL 270 (376)
Q Consensus 215 ~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i 270 (376)
..+|.++ ++++| +.+. +++|||++.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG-----~~~~------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNG-----RNVR------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECC-----EEEE------------EEEECCCCcEEcCHHHHHHc
Confidence 4456655 58888 6444 99999999999999876543
No 40
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=85.83 E-value=2.3 Score=35.12 Aligned_cols=24 Identities=25% Similarity=0.600 Sum_probs=18.9
Q ss_pred CCceEEecCCCCccccHHHHHHHH
Q 047535 248 KGNMFIDTGAPPTLLPKDFYNRLE 271 (376)
Q Consensus 248 ~~~~iiDTGt~~i~lp~~~~~~i~ 271 (376)
+..++||||++..++-.++.+.|-
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 346999999999999988755543
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.64 E-value=1.6 Score=32.78 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCceEEEEEeCCCCceeEeCCC
Q 047535 25 VMKFSIGTPPLLDIYGIVDTGSDLMWVQCLP 55 (376)
Q Consensus 25 ~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~ 55 (376)
+.+|.|.. + ++.+++||||+.+.++...
T Consensus 7 ~i~v~i~g--~-~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKING--K-KIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEETT--E-EEEEEEETTBSSEEESSGG
T ss_pred eEEEeECC--E-EEEEEEecCCCcceecccc
Confidence 45677777 6 9999999999999998763
No 42
>PF13650 Asp_protease_2: Aspartyl protease
Probab=83.33 E-value=1.6 Score=31.78 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=18.0
Q ss_pred ceEEecCCCCccccHHHHHHH
Q 047535 250 NMFIDTGAPPTLLPKDFYNRL 270 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~i 270 (376)
.++||||++...++++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 499999999999998876555
No 43
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=82.36 E-value=3.9 Score=30.19 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=50.0
Q ss_pred CCCceEEecCCCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEe
Q 047535 247 SKGNMFIDTGAPPTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIP 326 (376)
Q Consensus 247 ~~~~~iiDTGt~~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~ 326 (376)
++...++|||+....+|.+..+.. . .-.++.++-.++..+..-++..+.-
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~~~------------------------~------~~~~~~l~AANgt~I~tyG~~~l~l 57 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTKKS------------------------L------KPSPLTLQAANGTPIATYGTRSLTL 57 (89)
T ss_pred CCcEEEEeCCCceEeecccccccc------------------------c------cCCceEEEeCCCCeEeeeeeEEEEE
Confidence 455789999999999997542210 0 2236677777777887777666543
Q ss_pred cCCCC-eEEEEEEccCCCceeechhhhcce
Q 047535 327 PPVEG-VFCFAMQPIDGDVGIFGNFAQSDL 355 (376)
Q Consensus 327 ~~~~~-~~C~~i~~~~~~~~ilG~~fl~~~ 355 (376)
.-... ..-..+.-.+-..-|||.-||++|
T Consensus 58 dlGlrr~~~w~FvvAdv~~pIlGaDfL~~~ 87 (89)
T cd06094 58 DLGLRRPFAWNFVVADVPHPILGADFLQHY 87 (89)
T ss_pred EcCCCcEEeEEEEEcCCCcceecHHHHHHc
Confidence 32122 222333333346789999999986
No 44
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=81.82 E-value=3.5 Score=32.62 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=15.5
Q ss_pred ceEEecCCCCccccHHHHHH
Q 047535 250 NMFIDTGAPPTLLPKDFYNR 269 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~ 269 (376)
.|++|||+..+.++.+..++
T Consensus 37 kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 37 KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEEETT-SS-EEEHHHHHH
T ss_pred EEEEeCCCCccccCHHHHHH
Confidence 49999999999999987655
No 45
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.60 E-value=2.8 Score=31.03 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=18.0
Q ss_pred ceEEecCCCCccccHHHHHHH
Q 047535 250 NMFIDTGAPPTLLPKDFYNRL 270 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~i 270 (376)
.+++|||++...++.+.+..+
T Consensus 13 ~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 13 KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEEcCCcceEEeCHHHHHHh
Confidence 389999999999999886654
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=78.91 E-value=4 Score=28.77 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=18.3
Q ss_pred ceEEecCCCCccccHHHHHHH
Q 047535 250 NMFIDTGAPPTLLPKDFYNRL 270 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~i 270 (376)
.+++|||++..+++.+..+.+
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 399999999999999886665
No 47
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=76.01 E-value=5.4 Score=29.29 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=17.6
Q ss_pred ceEEecCCCCccccHHHHHHH
Q 047535 250 NMFIDTGAPPTLLPKDFYNRL 270 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~i 270 (376)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 499999999999999776554
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=71.88 E-value=5.2 Score=29.27 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.6
Q ss_pred ceEEecCCCCccccHHHHHHH
Q 047535 250 NMFIDTGAPPTLLPKDFYNRL 270 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~i 270 (376)
.+++|||.+.+.++.+..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 489999999999999887765
No 49
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=68.77 E-value=48 Score=31.15 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=33.3
Q ss_pred eEE-EEEEccCCCceeechhhhcceEEEEECCCCEEEEecC
Q 047535 332 VFC-FAMQPIDGDVGIFGNFAQSDLFIGYDFDSQMVSFKPT 371 (376)
Q Consensus 332 ~~C-~~i~~~~~~~~ilG~~fl~~~y~vFD~~~~rIGfa~~ 371 (376)
..| +.+.........||.-.||++--.-|++++++-|+..
T Consensus 306 l~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 306 LPCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred eccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 456 6777776778999999999999999999998877753
No 50
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=65.07 E-value=8.7 Score=28.33 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=20.7
Q ss_pred EEEeCCCCCceEEEEEeCCCCceeEeCC
Q 047535 27 KFSIGTPPLLDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 27 ~i~iGtp~q~~~~l~~DTGSs~~wv~~~ 54 (376)
.+.|+. | .+.+++|||+..+.+...
T Consensus 2 ~~~i~g--~-~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYING--K-LFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEECC--E-EEEEEEccCCCCeEEccc
Confidence 355664 7 999999999999999865
No 51
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=64.23 E-value=5.9 Score=29.67 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.7
Q ss_pred ceEEecCCCCccccHHH
Q 047535 250 NMFIDTGAPPTLLPKDF 266 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~ 266 (376)
.++||||+....++.+.
T Consensus 18 ~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 18 KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTBSSEEESSGG
T ss_pred EEEEecCCCcceecccc
Confidence 39999999999999743
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=59.78 E-value=13 Score=30.85 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=21.9
Q ss_pred eEEEEEEeCCCCCceEEEEEeCCCCceeEeCC
Q 047535 23 EYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 23 ~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~ 54 (376)
.+.+++.+ ... +++++|||||...++...
T Consensus 34 T~~v~l~~--~~t-~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNC--KGT-PIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEee--cCc-EEEEEEeCCCccceeehh
Confidence 35555544 446 899999999999999765
No 53
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=55.47 E-value=15 Score=28.14 Aligned_cols=65 Identities=17% Similarity=0.058 Sum_probs=40.6
Q ss_pred EEEEeCCCCCc---eEEEEEeCCCCcee-EeCCCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCCCCee
Q 047535 26 MKFSIGTPPLL---DIYGIVDTGSDLMW-VQCLPCVQCYKQVKPIYNPASSSSYKELSCQSEQCHLLDTVSCSSQQLCNY 101 (376)
Q Consensus 26 ~~i~iGtp~q~---~~~l~~DTGSs~~w-v~~~~C~~c~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~ 101 (376)
+++.|..|.|. ++.+++|||.+... ++...-. +-...+. ...
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~------~lgl~~~----------------------------~~~ 47 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN------KLGLPEL----------------------------DQR 47 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH------HcCCCcc----------------------------cCc
Confidence 67889888431 56899999999765 5533100 0011111 123
Q ss_pred eEEeCCCCeeeEEEEEEEEEecC
Q 047535 102 TYGYADSSLTKGVLATERITFGN 124 (376)
Q Consensus 102 ~~~Y~~g~~~~G~~~~D~v~i~~ 124 (376)
.+.-++|....-....+.+.+++
T Consensus 48 ~~~tA~G~~~~~~v~~~~v~igg 70 (107)
T TIGR03698 48 RVYLADGREVLTDVAKASIIING 70 (107)
T ss_pred EEEecCCcEEEEEEEEEEEEECC
Confidence 45556777666778899999998
No 54
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=48.22 E-value=17 Score=27.03 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.3
Q ss_pred CceEEecCCCCccccHHHHHHHH
Q 047535 249 GNMFIDTGAPPTLLPKDFYNRLE 271 (376)
Q Consensus 249 ~~~iiDTGt~~i~lp~~~~~~i~ 271 (376)
..+.+|||++...+|.+.++.+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 36999999999999988766654
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=47.50 E-value=32 Score=27.26 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=25.1
Q ss_pred cCceEEEEEEeCCCCCceEEEEEeCCCCceeEeCCCCCCCC
Q 047535 20 ANGEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCLPCVQCY 60 (376)
Q Consensus 20 ~~~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~~C~~c~ 60 (376)
.....|++++|.. + +++.++|||+..+.+...-+..|.
T Consensus 21 ~v~mLyI~~~ing--~-~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 21 QVSMLYINCKING--V-PVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp -----EEEEEETT--E-EEEEEEETT-SS-EEEHHHHHHTT
T ss_pred CcceEEEEEEECC--E-EEEEEEeCCCCccccCHHHHHHcC
Confidence 4467899999998 7 889999999999988765333443
No 56
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=45.97 E-value=24 Score=30.46 Aligned_cols=28 Identities=18% Similarity=-0.008 Sum_probs=19.3
Q ss_pred CCceeechhhhcceEEEEECCCCEEEEec
Q 047535 342 GDVGIFGNFAQSDLFIGYDFDSQMVSFKP 370 (376)
Q Consensus 342 ~~~~ilG~~fl~~~y~vFD~~~~rIGfa~ 370 (376)
+-.+|||.+|+|.|+=-..+. .+|-|-.
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 578999999999776444443 4565543
No 57
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=45.12 E-value=75 Score=27.52 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=28.9
Q ss_pred eeeeecCCCCceEEEEEeeEEecCCCCceeeEeccCCCCccCCCceEEecCCCCccccHHHH
Q 047535 206 STSLVSKEDKTYYFVTLEGISVGNLSNSSKLIPYYNSSGAISKGNMFIDTGAPPTLLPKDFY 267 (376)
Q Consensus 206 ~~p~~~~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~ 267 (376)
.+.+.... +.+|.++ ..|+| +.+. .++|||.+.+.++.+..
T Consensus 95 ~v~Lak~~-~GHF~a~---~~VNG-----k~v~------------fLVDTGATsVal~~~dA 135 (215)
T COG3577 95 EVSLAKSR-DGHFEAN---GRVNG-----KKVD------------FLVDTGATSVALNEEDA 135 (215)
T ss_pred EEEEEecC-CCcEEEE---EEECC-----EEEE------------EEEecCcceeecCHHHH
Confidence 33444433 4455544 58999 8776 89999999999998763
No 58
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=44.73 E-value=15 Score=28.93 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=47.5
Q ss_pred eEEecCCC-CccccHHHHHHHHHHHHHHhcCCCCCCCCCCccceeecCCCCCCCCeEEEEecCCceEEECCCceEEecCC
Q 047535 251 MFIDTGAP-PTLLPKDFYNRLEEQVRNAIKLTPYQDPRLGSQLCYKTPSMAGIAPILTAHFDGGAKVPLIHTSTFIPPPV 329 (376)
Q Consensus 251 ~iiDTGt~-~i~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~~~g~~~~~i~~~~y~~~~~~ 329 (376)
.+||||-+ ++.+|+++++++-.-.-... ..|.. +.-.+...+.- +.+.|....+..
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~~~~~~~------------~~~~a------~~~~v~t~V~~-~~iki~g~e~~~---- 85 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGLPLFSTI------------RIVLA------DGGVVKTSVAL-ATIKIDGVEKVA---- 85 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCCCccCCh------------hhhhh------cCCEEEEEEEE-EEEEECCEEEEE----
Confidence 58999998 99999998776543321111 11111 11122222222 333333333221
Q ss_pred CCeEEEEEEccC-CCceeechhhhcceEEEEECCCCEEE
Q 047535 330 EGVFCFAMQPID-GDVGIFGNFAQSDLFIGYDFDSQMVS 367 (376)
Q Consensus 330 ~~~~C~~i~~~~-~~~~ilG~~fl~~~y~vFD~~~~rIG 367 (376)
.+..++ ...-++|...|+..-.++|+...++-
T Consensus 86 ------~Vl~s~~~~~~liG~~~lk~l~~~vn~~~g~LE 118 (125)
T COG5550 86 ------FVLASDNLPEPLIGVNLLKLLGLVVNPKTGKLE 118 (125)
T ss_pred ------EEEccCCCcccchhhhhhhhccEEEcCCcceEe
Confidence 122222 23348999999999999998776653
No 59
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=44.53 E-value=1.4e+02 Score=22.70 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=24.3
Q ss_pred eEE-EEEEccCCCceeechhhhcceEEEEECCC
Q 047535 332 VFC-FAMQPIDGDVGIFGNFAQSDLFIGYDFDS 363 (376)
Q Consensus 332 ~~C-~~i~~~~~~~~ilG~~fl~~~y~vFD~~~ 363 (376)
..| +.+.....-.++||.-.||++=-.-|+++
T Consensus 71 ~~CSftVld~~~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 71 VECSAQVVDDNEKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred eeEEEEEEcCCCcceEeeHHHHhhcceeeeccC
Confidence 346 66776656789999999999887777653
No 60
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=37.32 E-value=52 Score=29.74 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=24.4
Q ss_pred CceEEEE---EEeCCC---CCceEEEEEeCCCCceeEeCC
Q 047535 21 NGEYVMK---FSIGTP---PLLDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 21 ~~~y~~~---i~iGtp---~q~~~~l~~DTGSs~~wv~~~ 54 (376)
...|.++ |.||.- .. ...++||||++.+.+|..
T Consensus 156 ~~~y~v~l~~i~vg~~~~~~~-~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 156 KKHYSPGPASLLFNGQPTGGK-GLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CCeEEEeEeEEEECCEECcCC-CceEEEECCCceEEcCCc
Confidence 3567765 588742 23 457999999999999976
No 61
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=33.81 E-value=58 Score=26.14 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=24.4
Q ss_pred ceEEEEEEeCCCCCceEEEEEeCCCCceeEeCC
Q 047535 22 GEYVMKFSIGTPPLLDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 22 ~~y~~~i~iGtp~q~~~~l~~DTGSs~~wv~~~ 54 (376)
-.-.+.+.|.+ + +..+++|+|++..+|...
T Consensus 20 ~vi~g~~~I~~--~-~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--I-PASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--E-EEEEEEecCCCcEEccHH
Confidence 44567788887 6 889999999999998655
No 62
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=33.14 E-value=71 Score=28.67 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=23.9
Q ss_pred CceEEEE---EEeCCC-------------CCceEEEEEeCCCCceeEeCC
Q 047535 21 NGEYVMK---FSIGTP-------------PLLDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 21 ~~~y~~~---i~iGtp-------------~q~~~~l~~DTGSs~~wv~~~ 54 (376)
.+.|.++ |.||.- .. ...++||||++.+.++..
T Consensus 145 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~-~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 145 PTYYYVNLEGISVGGKRLPIPPSVFAIDSDG-SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCceEeeeEEEEECCEEecCCchhcccccCC-CCcEEEeCCCcceEcCcc
Confidence 4667665 678762 12 346899999999999876
No 63
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=31.15 E-value=53 Score=29.70 Aligned_cols=39 Identities=21% Similarity=0.408 Sum_probs=27.1
Q ss_pred ccccccCceEEEE---EEeCCC----CCceEEEEEeCCCCceeEeCC
Q 047535 15 SNVSTANGEYVMK---FSIGTP----PLLDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 15 ~~~~~~~~~y~~~---i~iGtp----~q~~~~l~~DTGSs~~wv~~~ 54 (376)
.|+.....+|.++ |.||.- .. ...++||||++.+++|..
T Consensus 170 ~pi~~~~~~w~v~l~~i~v~~~~~~~~~-~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 170 TPVDNSSGFWQFTSTSYTVGGDAPWSRS-GFSAIADTGTTLILLPDA 215 (278)
T ss_pred EEccCCCcEEEEEEeeEEECCcceeecC-CceEEeecCCchhcCCHH
Confidence 3444335667665 567652 34 668999999999999876
No 64
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=28.49 E-value=79 Score=28.26 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=28.3
Q ss_pred cccccc-CceEEEE---EEeCCC-----CCceEEEEEeCCCCceeEeCCC
Q 047535 15 SNVSTA-NGEYVMK---FSIGTP-----PLLDIYGIVDTGSDLMWVQCLP 55 (376)
Q Consensus 15 ~~~~~~-~~~y~~~---i~iGtp-----~q~~~~l~~DTGSs~~wv~~~~ 55 (376)
.|+... ...|.+. |.||.- .. ...++||||++.+++|..-
T Consensus 172 ~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~-~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 172 TPVVSNGPGYWQVPLDGISVGGKSVISSSG-GGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred EecCCCCCCEEEEEeCeEEECCceeeecCC-CcEEEEecCCCCEeCCHHH
Confidence 344443 5677765 567762 24 6799999999999999773
No 65
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=28.17 E-value=69 Score=29.70 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=23.9
Q ss_pred CceEEEE---EEeCCC-----CCceEEEEEeCCCCceeEeCC
Q 047535 21 NGEYVMK---FSIGTP-----PLLDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 21 ~~~y~~~---i~iGtp-----~q~~~~l~~DTGSs~~wv~~~ 54 (376)
.++|.++ |.||.. .. ...++||||++.+++|..
T Consensus 187 ~~~w~v~l~~i~v~g~~~~~~~~-~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 187 KGYWQFEMGDVLIGGKSTGFCAG-GCAAIADSGTSLLAGPTT 227 (317)
T ss_pred CcEEEEEeCeEEECCEEeeecCC-CcEEEEecCCcceeCCHH
Confidence 3566665 678763 23 457999999999999864
No 66
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=26.53 E-value=86 Score=29.17 Aligned_cols=32 Identities=25% Similarity=0.173 Sum_probs=23.9
Q ss_pred ceEEEE---EEeCCCC------CceEEEEEeCCCCceeEeCC
Q 047535 22 GEYVMK---FSIGTPP------LLDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 22 ~~y~~~---i~iGtp~------q~~~~l~~DTGSs~~wv~~~ 54 (376)
..|.++ |.||... . ....+||||++.+++|..
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~~~-~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGNTK-GLGMLVDSGSTLSHFPED 248 (326)
T ss_pred ceEEEEEEEEEEcccccceeccc-CCCEEEeCCCCcccCCHH
Confidence 567665 5777542 3 557899999999999866
No 67
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=25.82 E-value=63 Score=29.55 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=23.5
Q ss_pred ceEEEE---EEeCCCCC-------ceEEEEEeCCCCceeEeCC
Q 047535 22 GEYVMK---FSIGTPPL-------LDIYGIVDTGSDLMWVQCL 54 (376)
Q Consensus 22 ~~y~~~---i~iGtp~q-------~~~~l~~DTGSs~~wv~~~ 54 (376)
..|.++ |.||.... ....++||||++.+.+|..
T Consensus 146 ~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 146 TFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred CeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 567765 67875321 0236899999999999876
No 68
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=23.08 E-value=1.5e+02 Score=19.92 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=16.8
Q ss_pred ceEEecCCCCccccHHHHHH
Q 047535 250 NMFIDTGAPPTLLPKDFYNR 269 (376)
Q Consensus 250 ~~iiDTGt~~i~lp~~~~~~ 269 (376)
.+++|||++...+..+.++.
T Consensus 11 ~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 11 RALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEcCCCcccccCHHHHHH
Confidence 59999999999988877553
Done!