BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047536
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 103/202 (50%), Gaps = 20/202 (9%)
Query: 3 PAAARISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLT 62
P +S++ V CA++W K + +D L F P DRR R + P P
Sbjct: 268 PTLEYVSSFTVACAYIWSCIAKSR------------NDKLQLFGFPIDRRARMKPPIPTA 315
Query: 63 YFGNCLARLSASAKRSELIGSNGIVVAAKAIG----RAICKLENGPLTGAENSLSHFIEK 118
YFGNC+ +A AK + LIG G + AAK IG + + ++G L S + + +
Sbjct: 316 YFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDMESFNDLVSE 375
Query: 119 LKMPSLLVTVAGSPKFRVYDTDFGWGKPKKSEVGHIGH-GSFSLNECRDEEGQGGVEIGF 177
MP+ + V+G+PK R YD DFGWGKPKK E I H G+ S+N C+ E +EIG
Sbjct: 376 -GMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAISINSCK--ESNEDLEIGV 432
Query: 178 VIGRHQLDFFNAIIEQGLNIQL 199
I Q++ F I + GL L
Sbjct: 433 CISATQMEDFVHIFDDGLKAYL 454
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 100/202 (49%), Gaps = 20/202 (9%)
Query: 3 PAAARISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLT 62
P +S++ V CA++W K + +D L F P DRR R + P P
Sbjct: 268 PTLEYVSSFTVACAYIWSCIAKSR------------NDKLQLFGFPIDRRARXKPPIPTA 315
Query: 63 YFGNCLARLSASAKRSELIGSNGIVVAAKAIG----RAICKLENGPLTGAENSLSHFIEK 118
YFGNC+ +A AK + LIG G + AAK IG + + ++G L S + + +
Sbjct: 316 YFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDXESFNDLVSE 375
Query: 119 LKMPSLLVTVAGSPKFRVYDTDFGWGKPKKSEVGHIGH-GSFSLNECRDEEGQGGVEIGF 177
P+ V+G+PK R YD DFGWGKPKK E I H G+ S+N C+ E +EIG
Sbjct: 376 -GXPTTXTWVSGTPKLRFYDXDFGWGKPKKLETVSIDHNGAISINSCK--ESNEDLEIGV 432
Query: 178 VIGRHQLDFFNAIIEQGLNIQL 199
I Q + F I + GL L
Sbjct: 433 CISATQXEDFVHIFDDGLKAYL 454
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 14/199 (7%)
Query: 3 PAAARISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLT 62
P ++++ VTCA++W +K E TG ++D++ F +D R +F P P +
Sbjct: 262 PKLTHVTSFTVTCAYVWTCIIK----SEAATGEEIDENGXEFFGCAADCRAQFNPPLPPS 317
Query: 63 YFGNCLARLSASAKRSELIGSNGIVVAAKAIGRAI---CKLENGPLTGAENSLSHFIEKL 119
YFGN L A ++ +L G G +A + IG AI K E L+G S F E
Sbjct: 318 YFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSG-----SWFKEYD 372
Query: 120 KMPSLL-VTVAGSPKFRVYDTDFGWGKPKKSEVGHIGHGS-FSLNECRDEEGQGGVEIGF 177
K+ + ++VAGSPK +Y DFGWG+P+K E I + S + + ++ G +EIG
Sbjct: 373 KVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISXSLSKSKDSDGDLEIGL 432
Query: 178 VIGRHQLDFFNAIIEQGLN 196
+ + + + F A G++
Sbjct: 433 SLSKTRXNAFAAXFTHGIS 451
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 49 SDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSNGIVVAAKAIGRAICKLENGPLTGA 108
+D R R P YFGN + + A +L + AA I A+ +++N L A
Sbjct: 289 TDGRARLRPSLPPGYFGNVIFTATPIAIAGDL-EFKPVWYAASKIHDALARMDNDYLRSA 347
Query: 109 ENSLSHFIEKLKMPSLLVTVAGSPKFR-------------VYDTDFGWGKP 146
+ L P L V G+ F+ ++D DFGWG+P
Sbjct: 348 LDYLE------LQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRP 392
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 49 SDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSNGIVVAAKAIGRAICKLENGPLTGA 108
+D R R P YFGN + + A +L + AA I A+ +++N L A
Sbjct: 289 TDGRARLRPSLPPGYFGNVIFTATPIAIAGDL-EFKPVWYAASKIHDALARMDNDYLRSA 347
Query: 109 ENSLSHFIEKLKMPSLLVTVAGSPKFR-------------VYDTDFGWGKP 146
+ L P L V G+ F+ ++D DFGWG+P
Sbjct: 348 LDYLE------LQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRP 392
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 49 SDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSNGIVVAAKAIGRAICKLENGPLTGA 108
+D R R P YFGN + + A +L + AA I A+ +++N L A
Sbjct: 286 TDGRARLRPSLPPGYFGNVIFTATPIAIAGDL-EFKPVWYAASKIHDALARMDNDYLRSA 344
Query: 109 ENSLSHFIEKLKMPSLLVTVAGSPKFR-------------VYDTDFGWGKP 146
+ L P L V G+ F+ ++D DFGWG+P
Sbjct: 345 LDYLE------LQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRP 389
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 98 CKLENGPLTGAENSLSHFIEKLKMPSLLVTVAGSPKFRVYDTDFGWGKPKKSEVGHI 154
C E GP+ +N ++ FI+ K+ L A V D DFG+G V H+
Sbjct: 270 CDYEFGPI---QNGVNEFIKTPKLDDLFAKYAEEVGEAVIDDDFGYGSTDTGNVSHV 323
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 110 NSLSHFIEKLKMPSLLVTVAGSPKFRVYDTDFGWGKPKKSEVGHIGHGSFSLNECRDEEG 169
N+ + +K+ ++L++ G + +V+D D+GW H F C E
Sbjct: 435 NNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHSGFHEVTC--ELN 492
Query: 170 QGGVEIGF 177
G V+ +
Sbjct: 493 HGRVKFSY 500
>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|G Chain G, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|G Chain G, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|G Chain G, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|G Chain G, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3G4S|G Chain G, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|G Chain G, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|G Chain G, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3I55|G Chain G, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|G Chain G, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
Length = 348
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 154 IGHGSFSLNECRDEEGQGGVEIGFVIGRHQLDFFNAIIEQGLNIQLAVSSTALMTG 209
IG G + N+ EG GV+ G +G Q +A I++G +IQ+ ST L TG
Sbjct: 114 IGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEG-SIQVLSDSTVLDTG 168
>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|G Chain G, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|I Chain I, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|I Chain I, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|I Chain I, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|I Chain I, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|I Chain I, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|I Chain I, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|I Chain I, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|I Chain I, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|I Chain I, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|I Chain I, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|I Chain I, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|I Chain I, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|I Chain I, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|G Chain G, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|G Chain G, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1S72|G Chain G, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1W2B|G Chain G, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|1YHQ|G Chain G, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|G Chain G, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|G Chain G, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|G Chain G, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|G Chain G, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|G Chain G, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|G Chain G, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|G Chain G, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|G Chain G, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|G Chain G, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|G Chain G, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|G Chain G, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|G Chain G, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|G Chain G, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|G Chain G, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|G Chain G, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|G Chain G, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|G Chain G, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|G Chain G, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|G Chain G, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|G Chain G, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|G Chain G, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CME|G Chain G, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|G Chain G, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3CXC|G Chain G, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
Length = 348
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 154 IGHGSFSLNECRDEEGQGGVEIGFVIGRHQLDFFNAIIEQGLNIQLAVSSTALMTG 209
IG G + N+ EG GV+ G +G Q +A I++G +IQ+ ST L TG
Sbjct: 114 IGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEG-SIQVLSDSTVLDTG 168
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 122 PSLLVTVAGSPKFRVYDTDFGWGKP 146
P L++ + YD DFGWGKP
Sbjct: 344 PQELLSFTSWCRLGFYDLDFGWGKP 368
>pdb|1TYG|A Chain A, Structure Of The Thiazole SynthaseTHIS COMPLEX
pdb|1TYG|C Chain C, Structure Of The Thiazole SynthaseTHIS COMPLEX
Length = 253
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 75 AKRSELIGSNGIVVAAKAIGRAICKLENGPLTGAENSLSHFIEKLKMPSLLVTVAGSPKF 134
A++ E +G + I+ A IG L PL +LS IE+ K+P ++ GSPK
Sbjct: 138 ARKLEELGVHAIMPGASPIGSGQGILN--PL-----NLSFIIEQAKVPVIVDAGIGSPKD 190
Query: 135 RVYDTDFG 142
Y + G
Sbjct: 191 AAYAMELG 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,053,149
Number of Sequences: 62578
Number of extensions: 290069
Number of successful extensions: 484
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 14
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)