Query 047536
Match_columns 237
No_of_seqs 105 out of 1156
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03157 spermidine hydroxycin 100.0 9.1E-40 2E-44 306.9 18.3 178 5-194 254-446 (447)
2 PLN02481 Omega-hydroxypalmitat 100.0 2.4E-39 5.1E-44 303.3 17.9 176 5-193 259-435 (436)
3 PLN02663 hydroxycinnamoyl-CoA: 100.0 2.2E-39 4.8E-44 302.7 17.4 177 5-193 246-430 (431)
4 PF02458 Transferase: Transfer 100.0 5.2E-38 1.1E-42 291.6 13.6 173 9-193 252-431 (432)
5 PLN00140 alcohol acetyltransfe 100.0 9.8E-37 2.1E-41 286.4 17.2 172 6-190 243-428 (444)
6 PRK09294 acyltransferase PapA5 97.8 0.00029 6.3E-09 65.5 12.2 117 6-136 228-347 (416)
7 PF07247 AATase: Alcohol acety 93.1 3.1 6.8E-05 39.3 14.0 86 8-99 273-365 (480)
8 TIGR02946 acyl_WS_DGAT acyltra 90.7 14 0.00031 34.4 16.0 171 7-197 249-441 (446)
9 COG4908 Uncharacterized protei 57.6 27 0.00059 33.1 5.9 81 6-98 237-317 (439)
10 PF02505 MCR_D: Methyl-coenzym 45.8 18 0.00039 29.5 2.4 49 172-223 76-124 (153)
11 TIGR03847 conserved hypothetic 40.5 1.1E+02 0.0023 25.7 6.2 49 145-197 7-57 (177)
12 PF11290 DUF3090: Protein of u 30.9 1.9E+02 0.0041 24.1 6.2 49 145-197 5-55 (171)
13 PF05697 Trigger_N: Bacterial 30.9 86 0.0019 24.6 4.2 39 171-215 11-49 (145)
14 COG1254 AcyP Acylphosphatases 30.0 78 0.0017 23.5 3.5 24 171-194 42-65 (92)
15 PF07428 Tri3: 15-O-acetyltran 29.1 72 0.0016 29.8 3.8 37 38-74 319-355 (413)
16 PF05660 DUF807: Coxiella burn 28.1 27 0.00058 27.6 0.8 14 54-67 13-26 (142)
17 TIGR03260 met_CoM_red_D methyl 27.7 57 0.0012 26.6 2.6 48 171-222 74-121 (150)
18 COG4055 McrD Methyl coenzyme M 24.1 74 0.0016 25.9 2.6 47 173-222 85-131 (165)
No 1
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=100.00 E-value=9.1e-40 Score=306.88 Aligned_cols=178 Identities=21% Similarity=0.334 Sum_probs=158.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccccccCCCCCCCCCcEEEEEEecCCCCCCCCCCcCCccccccccccccccccccccC
Q 047536 5 AARISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSN 84 (237)
Q Consensus 5 ~~~~St~dal~AliW~~~~rAr~~~~~~~~~~~~~~~~s~l~~~vd~R~rl~p~lp~~Y~GN~v~~~~~~~~~~eL~~~~ 84 (237)
..++|++|+|+||+|+|++|||.. .+++.+.+.++||+|+|++||+|++||||++..+.+..+.+||.+ .
T Consensus 254 ~~~~St~dalsA~lWr~~~rAr~~---------~~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~el~~-~ 323 (447)
T PLN03157 254 GRPYTRYETVAGHVWRSACKARGH---------EPEQPTALGICVDSRSRMQPPLPDGYFGNATLDVIAESTSGELVS-K 323 (447)
T ss_pred CCCccHHHHHHHHHHHHHHHHccC---------CCCCceEEEEEecCCCCCCCCCCCCcccceeeeccchhhHHHHhh-C
Confidence 357999999999999999999986 567889999999999999999999999999999998888999988 8
Q ss_pred cHHHHHHHHHHHHHhccCchhhhHHhHHhhhhc--ccC------------CCCCeEEEecCCCCCcCccccCCCccceee
Q 047536 85 GIVVAAKAIGRAICKLENGPLTGAENSLSHFIE--KLK------------MPSLLVTVAGSPKFRVYDTDFGWGKPKKSE 150 (237)
Q Consensus 85 ~L~~vA~~IR~ai~~~t~e~i~~~~~~~~~~~~--~l~------------~~~~~~~vtsw~~~~~~~~DFG~GkP~~v~ 150 (237)
+|+++|..||+++.++++++++++++|++...+ .+. ....++.+|||+||++|++|||||+|.+++
T Consensus 324 ~l~~~a~~Ir~ai~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vssw~~~~~y~~DFGwGkp~~~~ 403 (447)
T PLN03157 324 PLGYASSKIREAIEKVTNEYVQSAIDYLKNQEDLTRFQDLHALGGAEGPFYGNPNLGVVSWLTLPIYGLDFGWGKEIYMG 403 (447)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHhhCccchhhhcccccccccccccCCCceEEeecccCCccccccCCCccceec
Confidence 999999999999999999999999999886542 110 124679999999999999999999999998
Q ss_pred ccccCc-cEEEEeecCCCCCCCcEEEEEecCHHHHHHHHHHHHHH
Q 047536 151 VGHIGH-GSFSLNECRDEEGQGGVEIGFVIGRHQLDFFNAIIEQG 194 (237)
Q Consensus 151 ~~~~~~-G~v~i~p~~~g~g~Gg~ev~v~L~~e~M~~l~~~~~~~ 194 (237)
+..... |.++++|+++++ ||+||.|+|++++|++|+++|++.
T Consensus 404 p~~~~~~g~~~l~~~~~~~--g~iev~v~L~~~~M~~f~~~~~~~ 446 (447)
T PLN03157 404 PGTHDFDGDSLLLPGQNED--GSVILALCLQVAHMEAFKKFFYED 446 (447)
T ss_pred ccccCCCceEEEeecCCCC--CcEEEEEEcCHHHHHHHHHHHHhh
Confidence 864444 999999998766 889999999999999999998875
No 2
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=100.00 E-value=2.4e-39 Score=303.30 Aligned_cols=176 Identities=21% Similarity=0.305 Sum_probs=158.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccccccCCCCCCCCCcEEEEEEecCCCCCCCCCCcCCccccccccccccccccccccC
Q 047536 5 AARISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSN 84 (237)
Q Consensus 5 ~~~~St~dal~AliW~~~~rAr~~~~~~~~~~~~~~~~s~l~~~vd~R~rl~p~lp~~Y~GN~v~~~~~~~~~~eL~~~~ 84 (237)
..++|++|+|+||+|+|++||+.. ++++.+.+.++||+|+|++||+|++||||++..+.+.++++||.+ .
T Consensus 259 ~~~~S~~dal~A~iW~~~~rA~~~---------~~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~~l~~-~ 328 (436)
T PLN02481 259 IKKCSTFEALTAFVWRARTKALKM---------LPDQQTKLLFAVDGRSRFNPPLPKGYFGNGIVLTNALTTAGELLE-N 328 (436)
T ss_pred CCCcChHHHHHHHHHHHHHhccCC---------CCCCeEEEEEEEcCccCCCCCCCCCceeeeeeeccccccHHHHhh-C
Confidence 357999999999999999999876 567889999999999999999999999999999999999999998 9
Q ss_pred cHHHHHHHHHHHHHhccCchhhhHHhHHhhhhcccCCCCCeEEEecCCCCCcCccccCCCccceeeccccCc-cEEEEee
Q 047536 85 GIVVAAKAIGRAICKLENGPLTGAENSLSHFIEKLKMPSLLVTVAGSPKFRVYDTDFGWGKPKKSEVGHIGH-GSFSLNE 163 (237)
Q Consensus 85 ~L~~vA~~IR~ai~~~t~e~i~~~~~~~~~~~~~l~~~~~~~~vtsw~~~~~~~~DFG~GkP~~v~~~~~~~-G~v~i~p 163 (237)
+|+++|.+||+++.++++++++++++|++..+ .......++.+|||++|++|++|||||+|+++++..... |.++++|
T Consensus 329 ~l~~~A~~Ir~~i~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~vssw~~~~~y~~DFG~G~P~~~~p~~~~~~~~~~~~~ 407 (436)
T PLN02481 329 PLSHAVGLVQDAIKMVNDGYMRSAIDYFEVTR-ARPSLASTLLITTWSRLSFHTTDFGWGEPVLSGPVGLPEKEVILFLS 407 (436)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCcEEEEecCCCCcccccccCCccccccccccCCCceEEEec
Confidence 99999999999999999999999999998765 332346789999999999999999999999998765554 8999999
Q ss_pred cCCCCCCCcEEEEEecCHHHHHHHHHHHHH
Q 047536 164 CRDEEGQGGVEIGFVIGRHQLDFFNAIIEQ 193 (237)
Q Consensus 164 ~~~g~g~Gg~ev~v~L~~e~M~~l~~~~~~ 193 (237)
+..++ ||++|.|+|++++|++|+++|+.
T Consensus 408 ~~~~~--~gi~v~v~L~~~~M~~f~~~~~~ 435 (436)
T PLN02481 408 HGKER--KSINVLLGLPASAMKTFQELMEI 435 (436)
T ss_pred cCCCC--CcEEEEEECCHHHHHHHHHHHhh
Confidence 76655 89999999999999999998764
No 3
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=100.00 E-value=2.2e-39 Score=302.73 Aligned_cols=177 Identities=21% Similarity=0.365 Sum_probs=158.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccccccCCCCCCCCCcEEEEEEecCCCCCCCCCCcCCccccccccccccccccccccC
Q 047536 5 AARISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSN 84 (237)
Q Consensus 5 ~~~~St~dal~AliW~~~~rAr~~~~~~~~~~~~~~~~s~l~~~vd~R~rl~p~lp~~Y~GN~v~~~~~~~~~~eL~~~~ 84 (237)
..++|++|+|+||+|+|++||+.. ++++.+.+.++||+|+|++|++|++||||++..+.+.++++|+.+ +
T Consensus 246 ~~~~S~~dalsA~lW~~~~rA~~~---------~~~~~~~~~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~~el~~-~ 315 (431)
T PLN02663 246 TISYSSYEMLAGHVWRSACKARGL---------PDDQETKLYIATDGRSRLRPQLPPGYFGNVIFTATPIAVAGELQS-K 315 (431)
T ss_pred CcccchHHHHHHHHHhhhhhcccC---------CCccceEEEEEecCCcCCCCCCCCCcccceEEecccccchhhhhh-C
Confidence 357999999999999999999976 567889999999999999999999999999999999999999988 8
Q ss_pred cHHHHHHHHHHHHHhccCchhhhHHhHHhhhhc--ccC-----CCCCeEEEecCCCCCcCccccCCCccceeeccccCc-
Q 047536 85 GIVVAAKAIGRAICKLENGPLTGAENSLSHFIE--KLK-----MPSLLVTVAGSPKFRVYDTDFGWGKPKKSEVGHIGH- 156 (237)
Q Consensus 85 ~L~~vA~~IR~ai~~~t~e~i~~~~~~~~~~~~--~l~-----~~~~~~~vtsw~~~~~~~~DFG~GkP~~v~~~~~~~- 156 (237)
+|+.+|..||+++.+++++|++++++|++...+ .+. ....++.+|||++|++|++|||||+|+++++.....
T Consensus 316 ~l~~~a~~ir~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vssw~~~~~y~~DFGwGkP~~v~~~~~~~~ 395 (431)
T PLN02663 316 PTWYAAGKIHDALVRMDDDYLRSALDYLELQPDLSALVRGAHTFRCPNLGITSWVRLPIYDADFGWGRPIFMGPGGIAYE 395 (431)
T ss_pred CHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCcccchhhcccCcCcCCcEEecccCCCCccccccCCCcccccccccccCC
Confidence 999999999999999999999999999987542 111 125679999999999999999999999998764444
Q ss_pred cEEEEeecCCCCCCCcEEEEEecCHHHHHHHHHHHHH
Q 047536 157 GSFSLNECRDEEGQGGVEIGFVIGRHQLDFFNAIIEQ 193 (237)
Q Consensus 157 G~v~i~p~~~g~g~Gg~ev~v~L~~e~M~~l~~~~~~ 193 (237)
|.++++|+++++ ||+||.|+|++++|++|++++++
T Consensus 396 g~~~~~p~~~~~--g~iev~v~L~~~~m~~f~~~~~~ 430 (431)
T PLN02663 396 GLSFILPSPTND--GSLSVAISLQSEHMKLFEKFLYE 430 (431)
T ss_pred CeEEEeccCCCC--CcEEEEEECCHHHHHHHHHHHhh
Confidence 899999998766 88999999999999999998865
No 4
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=100.00 E-value=5.2e-38 Score=291.62 Aligned_cols=173 Identities=26% Similarity=0.354 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHHHHHHhcccccccCCCCCCCCCcEEEEEEecCCCCCCCCCCcCCccccccccccccccccccccCcHHH
Q 047536 9 STYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSNGIVV 88 (237)
Q Consensus 9 St~dal~AliW~~~~rAr~~~~~~~~~~~~~~~~s~l~~~vd~R~rl~p~lp~~Y~GN~v~~~~~~~~~~eL~~~~~L~~ 88 (237)
|+||+|+||+|+|++|||.. +.+..+.+.++||+|+|++||+|++||||++.++.+.++.+|+.. ++|+.
T Consensus 252 St~d~l~A~lWr~~~rar~~---------~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~el~~-~~l~~ 321 (432)
T PF02458_consen 252 STFDALTALLWRCITRARGL---------PSDETSRLSFAVDCRKRLNPPLPEGYFGNAVFFAFASATAGELLS-EPLSD 321 (432)
T ss_dssp -HHHHHHHHHHHHHHHHHCH---------TTTTCEEEEEEEETHHHSSS---TTB-S--EEEEEEEEEHHHHHH-SHHHH
T ss_pred CeeEEEEEehhhhhcccccc---------ccccccccccccccCCCcCCCcceeecCceEeecccccchhhhhh-hhhhH
Confidence 99999999999999999987 455669999999999999999999999999999999999999988 99999
Q ss_pred HHHHHHHHHHh-ccCchhhhHHhHHhhhhc--c---cCCCCCeEEEecCCCCCcCccccCCCccceeeccccCc-cEEEE
Q 047536 89 AAKAIGRAICK-LENGPLTGAENSLSHFIE--K---LKMPSLLVTVAGSPKFRVYDTDFGWGKPKKSEVGHIGH-GSFSL 161 (237)
Q Consensus 89 vA~~IR~ai~~-~t~e~i~~~~~~~~~~~~--~---l~~~~~~~~vtsw~~~~~~~~DFG~GkP~~v~~~~~~~-G~v~i 161 (237)
+|..||+++.+ ++++++++.++|++.... . ....+.++.+|||+++++|++|||||+|+++++..... +.+++
T Consensus 322 ~a~~ir~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~y~~DFG~G~P~~~~~~~~~~~~~~~~ 401 (432)
T PF02458_consen 322 IARLIREAIAKMVTEEYVRSAIDWVESQSSRKLIPSFFPGGPDVVVSSWRRFPFYEVDFGWGKPVAVRPPSPPRGGGVFL 401 (432)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHC-CCCHTCCTSTCG-CEEEEEEETTSSGGG--TSSSS-SEEEECGCCSTTEEEE
T ss_pred HHHhhhhhhhccchHHHhhhhhccccccccccccccccCcCCceeccccccCCCcccccCCCCceEEEcccccCCCEEEE
Confidence 99999999998 899999999999987421 1 11223899999999999999999999999999886666 77799
Q ss_pred eecCCCCCCCcEEEEEecCHHHHHHHHHHHHH
Q 047536 162 NECRDEEGQGGVEIGFVIGRHQLDFFNAIIEQ 193 (237)
Q Consensus 162 ~p~~~g~g~Gg~ev~v~L~~e~M~~l~~~~~~ 193 (237)
+|+++++ ||+||.|+|++++|++|+++.+.
T Consensus 402 ~p~~~~~--ggvev~v~L~~~~M~~f~~d~e~ 431 (432)
T PF02458_consen 402 LPSRGGD--GGVEVWVCLPEEAMERFEKDFEF 431 (432)
T ss_dssp EE-SSTT--SSEEEEEEEEHHHHHHHHHHHH-
T ss_pred EccCCCc--CcEEEEEECCHHHHhChhhcccC
Confidence 9998555 89999999999999999998764
No 5
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=100.00 E-value=9.8e-37 Score=286.38 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=144.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccccccCCCCCCCCCcEEEEEEecCCCCCCCCCCcCCccccccccccccccccccccCc
Q 047536 6 ARISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSNG 85 (237)
Q Consensus 6 ~~~St~dal~AliW~~~~rAr~~~~~~~~~~~~~~~~s~l~~~vd~R~rl~p~lp~~Y~GN~v~~~~~~~~~~eL~~~~~ 85 (237)
.++|++|+|+||+|+|++||+.... +.++.+.+.++||+|+|++||+|++||||++..+.+.++.+|+ . .+
T Consensus 243 ~~~S~~e~vsA~iWr~~~rA~~~~~-------~~~~~~~~~~~vn~R~Rl~PpLP~~y~GN~i~~~~~~~~~~~~-~-~~ 313 (444)
T PLN00140 243 PNPSRIETLSCFIWKCCTAASRSIS-------AAPRPSISVHAVNIRQRTKPPMSRYSIGNLFWWALAAADPADT-K-IE 313 (444)
T ss_pred CCCchhHHHHHHHHHHHHHHhhhcc-------CCCCceEEEEEEeccccCCCCCCcccccchhhhheeccccccc-c-cc
Confidence 5799999999999999999965421 3357899999999999999999999999999999998888887 4 88
Q ss_pred HHHHHHHHHHHHHhccCchhhhHHhHHh---------hhhcccC-CCCCeEEEecCCCCCcCccccCCCccceeecccc-
Q 047536 86 IVVAAKAIGRAICKLENGPLTGAENSLS---------HFIEKLK-MPSLLVTVAGSPKFRVYDTDFGWGKPKKSEVGHI- 154 (237)
Q Consensus 86 L~~vA~~IR~ai~~~t~e~i~~~~~~~~---------~~~~~l~-~~~~~~~vtsw~~~~~~~~DFG~GkP~~v~~~~~- 154 (237)
|+++|.+||+++.++|++|+++++++.+ ..+ ... .....+.+|||+||++||+|||||||++++++..
T Consensus 314 l~~~a~~Ir~~i~~~~~e~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vssw~r~~~ye~DFGwGkP~~v~~~~~~ 392 (444)
T PLN00140 314 LNELVSLTRESIANYNSDYLKSLQGENGLEGMSEYLNQLV-GIFSEEPEIFLFSSWLNFGLNDVDFGWGKPIWVGLLGEV 392 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHh-hcccCCCceEEecccccCCccccccCCCCceeeeccccc
Confidence 9999999999999999999999876422 222 211 1234458999999999999999999999988632
Q ss_pred --Cc-cEEEEeecCCCCCCCcEEEEEecCHHHHHHHHHH
Q 047536 155 --GH-GSFSLNECRDEEGQGGVEIGFVIGRHQLDFFNAI 190 (237)
Q Consensus 155 --~~-G~v~i~p~~~g~g~Gg~ev~v~L~~e~M~~l~~~ 190 (237)
.. |.++++|+++ + ||+||.|+|++++|++|+++
T Consensus 393 ~~~~~~~~~l~~~~~-~--~giev~v~L~~~~M~~f~~d 428 (444)
T PLN00140 393 GPAFRNLTVFKETGD-N--NGIEAWITLDEKIMAILERD 428 (444)
T ss_pred CCcccceEEEEecCC-C--CeEEEEEecCHHHHHHHhhC
Confidence 23 8899999864 3 68999999999999999985
No 6
>PRK09294 acyltransferase PapA5; Provisional
Probab=97.81 E-value=0.00029 Score=65.55 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccccccCCCCCCCCCcEEEEEEecCCCCCCCCCCcCCccccccccccccccccccccCc
Q 047536 6 ARISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSNG 85 (237)
Q Consensus 6 ~~~St~dal~AliW~~~~rAr~~~~~~~~~~~~~~~~s~l~~~vd~R~rl~p~lp~~Y~GN~v~~~~~~~~~~eL~~~~~ 85 (237)
..+|.+.+|.|.+|.++.+.... ++.+..+.++||.|+++.|+++..+++|++.......++ ..+.+
T Consensus 228 ~~~t~~~~l~Aa~~~~l~r~~~~----------~~~~i~~~~pv~~R~~l~p~~~~~~~~n~~g~~~~~~~~---~~~~s 294 (416)
T PRK09294 228 HRLTVNALVSAAILLAEWQLRRT----------PHVPLPYVYPVDLRFRLTPPVAATEGTNLLGAATYLAEI---GPDTD 294 (416)
T ss_pred cCCcHHHHHHHHHHHHHHHhcCC----------CCCceeeecchhhHhhcCCCCCcccceeeEeeeeeeccc---cCCCC
Confidence 35899999999999999877543 245577889999999999999988999988776544333 23368
Q ss_pred HHHHHHHHHHHHHh-ccCchh-hhHHhHHhhhhcccC-CCCCeEEEecCCCCCc
Q 047536 86 IVVAAKAIGRAICK-LENGPL-TGAENSLSHFIEKLK-MPSLLVTVAGSPKFRV 136 (237)
Q Consensus 86 L~~vA~~IR~ai~~-~t~e~i-~~~~~~~~~~~~~l~-~~~~~~~vtsw~~~~~ 136 (237)
+.++|+.+++.+.+ ++.+.+ +++.++..... .-+ .....+.+|+|.+++.
T Consensus 295 f~ela~~v~~~~~~~l~~~~v~~~~~~~~~~~~-~~~~~~~~~v~~Snlg~~~~ 347 (416)
T PRK09294 295 IVDLARAIAATLRADLADGVIQQSFLHFGTAFE-GTPPGLPPVVFITNLGVAPP 347 (416)
T ss_pred HHHHHHHHHHHHhhhhhcceeeehhhccccccc-CCCCCCCCeEEEecCCcCCC
Confidence 99999999999974 566664 34444311111 111 1335789999999943
No 7
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=93.07 E-value=3.1 Score=39.34 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHHhcccccccCCCCCCCCCcEEEEEEecCCCCCCCCCC---cCCcccccccccccccccccc---
Q 047536 8 ISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFP---LTYFGNCLARLSASAKRSELI--- 81 (237)
Q Consensus 8 ~St~dal~AliW~~~~rAr~~~~~~~~~~~~~~~~s~l~~~vd~R~rl~p~lp---~~Y~GN~v~~~~~~~~~~eL~--- 81 (237)
+|---.|.|++=.++.+....... ..........++|+|+.+.+... ..-+|+.+....-........
T Consensus 273 ~TlT~~L~al~~~al~~~~~~~~~------~~~~~~~~~~pvnlR~~~p~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~ 346 (480)
T PF07247_consen 273 TTLTALLHALIALALSKVQLPKPK------SEKSSFKISTPVNLRRFLPEDSELRDEYSYGNFVGGIDFSYSISPVSASR 346 (480)
T ss_pred CCHHHHHHHHHHHHHHhhhccccc------ccCceEEEEeeeeCCCCCCccccccccccceeEEEccceeeecccccccc
Confidence 344445666665666553222110 23446788999999999965444 356688766532211111111
Q ss_pred -ccCcHHHHHHHHHHHHHh
Q 047536 82 -GSNGIVVAAKAIGRAICK 99 (237)
Q Consensus 82 -~~~~L~~vA~~IR~ai~~ 99 (237)
....+.++|+.+++.+.+
T Consensus 347 ~~~~~fW~~a~~~~~~i~~ 365 (480)
T PF07247_consen 347 GSSENFWELARQIQKEIKE 365 (480)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 114689999999999876
No 8
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=90.65 E-value=14 Score=34.36 Aligned_cols=171 Identities=12% Similarity=0.044 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcccccccCCCCCCCCCcEEEEEEecCCCCCCCCCCcCCccccccccccccccccccccCcH
Q 047536 7 RISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSNGI 86 (237)
Q Consensus 7 ~~St~dal~AliW~~~~rAr~~~~~~~~~~~~~~~~s~l~~~vd~R~rl~p~lp~~Y~GN~v~~~~~~~~~~eL~~~~~L 86 (237)
.+|-||++.|.+-..+.+-..... . .+.....+.++||.|... +..-.||.+......++.++ +.++
T Consensus 249 g~T~ndvllaa~~~al~~~~~~~~-----~-~~~~~i~~~~pv~~R~~~----~~~~~~N~~~~~~~~l~~~~---~~~~ 315 (446)
T TIGR02946 249 GVTINDVVLAAVAGALRRYLEERG-----E-LPDDPLVAMVPVSLRPME----DDSEGGNQVSAVLVPLPTGI---ADPV 315 (446)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcC-----C-CCCCceEEEEeeeccccc----cCCCCCCEEEEEEecCCCCC---CCHH
Confidence 578899999988887765422211 0 345568999999999863 23455776666555555432 1333
Q ss_pred HHHHHHHHHHHHhc----cCchhhhHHhHHhhhhc-------c-cC---CCCCeEEEecCCCCCcCccccCCCccce-ee
Q 047536 87 VVAAKAIGRAICKL----ENGPLTGAENSLSHFIE-------K-LK---MPSLLVTVAGSPKFRVYDTDFGWGKPKK-SE 150 (237)
Q Consensus 87 ~~vA~~IR~ai~~~----t~e~i~~~~~~~~~~~~-------~-l~---~~~~~~~vtsw~~~~~~~~DFG~GkP~~-v~ 150 (237)
+....|++.+... ..-.......++..... . +. ....++++|+.....- ...|| |.++. +-
T Consensus 316 -~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNvpg~~~-~~~~~-g~~v~~~~ 392 (446)
T TIGR02946 316 -ERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNVPGPRE-PLYLA-GAKLDELY 392 (446)
T ss_pred -HHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCCCCCCc-ccEec-CeeEEEee
Confidence 2235555554442 11111111122221100 0 00 1234778888765542 23333 33332 21
Q ss_pred ccc--cCc-cEEEEeecCCCCCCCcEEEEEecCHH---HHHHHHHHHHHHHHh
Q 047536 151 VGH--IGH-GSFSLNECRDEEGQGGVEIGFVIGRH---QLDFFNAIIEQGLNI 197 (237)
Q Consensus 151 ~~~--~~~-G~v~i~p~~~g~g~Gg~ev~v~L~~e---~M~~l~~~~~~~~~~ 197 (237)
+.. ... +..+-+-+-. |.+.+.+.--++ +.++|.+.+.+.++-
T Consensus 393 ~~~p~~~~~~l~~~~~sy~----g~l~~~~~~d~~~~~d~~~l~~~~~~~l~~ 441 (446)
T TIGR02946 393 PLSPLLDGQGLNITVTSYN----GQLDFGLLADRDAVPDPQELADALEAALEE 441 (446)
T ss_pred ccccccCCCeEEEEEEecC----CeEEEEEeechhhCCCHHHHHHHHHHHHHH
Confidence 111 111 3333333332 567777766543 577888888777765
No 9
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=57.64 E-value=27 Score=33.07 Aligned_cols=81 Identities=9% Similarity=0.031 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccccccCCCCCCCCCcEEEEEEecCCCCCCCCCCcCCccccccccccccccccccccCc
Q 047536 6 ARISTYVVTCAFMWVPWMKIQEAEEGTTGGQLDDDTLYHFMAPSDRRGRFELPFPLTYFGNCLARLSASAKRSELIGSNG 85 (237)
Q Consensus 6 ~~~St~dal~AliW~~~~rAr~~~~~~~~~~~~~~~~s~l~~~vd~R~rl~p~lp~~Y~GN~v~~~~~~~~~~eL~~~~~ 85 (237)
...|-||++.|.+-+-...=....+ +........++||+|+.+... +..+||...+.....+..|+ .+
T Consensus 237 ~gaTiNDiilaa~~~fr~~y~~~~~-------k~~~~lsi~~~VDlRkyl~sk--~~sI~Nls~~~~i~I~~dd~---~~ 304 (439)
T COG4908 237 HGATINDIILAALLKFRLLYNTTHE-------KANNYLSIDMPVDLRKYLPSK--EESISNLSSYLTIVINVDDV---TD 304 (439)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhhch-------hhcCeeeeceeeehhhhcccc--ccceeccceeEEEEEecccc---cc
Confidence 3478899988877222221111111 345678899999999999632 26889988887777777777 45
Q ss_pred HHHHHHHHHHHHH
Q 047536 86 IVVAAKAIGRAIC 98 (237)
Q Consensus 86 L~~vA~~IR~ai~ 98 (237)
+.++...+....+
T Consensus 305 fe~t~~~vk~~~~ 317 (439)
T COG4908 305 FEKTLEKVKGIMN 317 (439)
T ss_pred HHHHHHHHHhhcC
Confidence 7777777776665
No 10
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=45.79 E-value=18 Score=29.52 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=34.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhhhhhcccc
Q 047536 172 GVEIGFVIGRHQLDFFNAIIEQGLNIQLAVSSTALMTGFRSDPTLLDYRKSE 223 (237)
Q Consensus 172 g~ev~v~L~~e~M~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (237)
-+.+.+.-.++.|+.+++.|.+.+.. .+.=. .+.-.|+.|||-||-|--
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf--~y~i~-~G~f~r~~~TvtDY~KyG 124 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPF--GYDIK-EGKFIRTKPTVTDYAKYG 124 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCC--ceEee-eeEEeccCCchhhhhhcC
Confidence 34444444469999999999998843 32222 366789999999997743
No 11
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=40.45 E-value=1.1e+02 Score=25.69 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=35.1
Q ss_pred ccceeeccccCc--cEEEEeecCCCCCCCcEEEEEecCHHHHHHHHHHHHHHHHh
Q 047536 145 KPKKSEVGHIGH--GSFSLNECRDEEGQGGVEIGFVIGRHQLDFFNAIIEQGLNI 197 (237)
Q Consensus 145 kP~~v~~~~~~~--G~v~i~p~~~g~g~Gg~ev~v~L~~e~M~~l~~~~~~~~~~ 197 (237)
.|.++-.+.+.. ..+|.+..+. |+--|.|.|++++++.|.+-+.+.|+-
T Consensus 7 ~pdRfvaGTVG~PG~RtFyLQa~~----g~rlvSv~lEK~Qv~aLAe~i~~LLde 57 (177)
T TIGR03847 7 PPDRFVAGTVGPPGARTFYLQARE----GSRVVSVALEKQQVAALAERIDELLDE 57 (177)
T ss_pred CCCeEEeeccCCCCceEEEEEecc----CCcEEEEEehHHHHHHHHHHHHHHHHH
Confidence 466655444443 3455555553 678899999999999999988888865
No 12
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.86 E-value=1.9e+02 Score=24.15 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=34.6
Q ss_pred ccceeeccccCc--cEEEEeecCCCCCCCcEEEEEecCHHHHHHHHHHHHHHHHh
Q 047536 145 KPKKSEVGHIGH--GSFSLNECRDEEGQGGVEIGFVIGRHQLDFFNAIIEQGLNI 197 (237)
Q Consensus 145 kP~~v~~~~~~~--G~v~i~p~~~g~g~Gg~ev~v~L~~e~M~~l~~~~~~~~~~ 197 (237)
.|.++-...+.. ..+|.+-.+. |+-.+.|.|++++++.|.+-+.+.|+-
T Consensus 5 ~pdRfvaGTVG~PG~RtFyLQa~~----g~r~vSV~lEK~Qv~~LAe~i~~lLde 55 (171)
T PF11290_consen 5 PPDRFVAGTVGQPGQRTFYLQARS----GGRVVSVALEKQQVAALAERIDELLDE 55 (171)
T ss_pred CCCEEEccCcCCCCceEEEEEEee----CCcEEEEEEeHHHHHHHHHHHHHHHHH
Confidence 466655554443 3455555554 578899999999999999988877755
No 13
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=30.85 E-value=86 Score=24.63 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=26.8
Q ss_pred CcEEEEEecCHHHHHHHHHHHHHHHHhhhhccccccccCCCCChh
Q 047536 171 GGVEIGFVIGRHQLDFFNAIIEQGLNIQLAVSSTALMTGFRSDPT 215 (237)
Q Consensus 171 Gg~ev~v~L~~e~M~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (237)
..+.+.+.++.++++...+ +.+.. ++.....+|||+.+.
T Consensus 11 ~~~~~~v~v~~~~~~~~~~---~~l~~---~~k~~~ipGFRkGK~ 49 (145)
T PF05697_consen 11 SKVKLEVEVPAEEVEKAYE---KALKE---LAKKVKIPGFRKGKA 49 (145)
T ss_dssp TEEEEEEEE-HHHHHHHHH---HHHHH---HHTTTTBTTS-TTSS
T ss_pred cEEEEEEEECHHHHHHHHH---HHHHH---HHhhCCCCCCCCCCC
Confidence 4688999999998876544 44444 456778999999874
No 14
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=30.01 E-value=78 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.8
Q ss_pred CcEEEEEecCHHHHHHHHHHHHHH
Q 047536 171 GGVEIGFVIGRHQLDFFNAIIEQG 194 (237)
Q Consensus 171 Gg~ev~v~L~~e~M~~l~~~~~~~ 194 (237)
|.+|+.++=+++++++|.+.+.++
T Consensus 42 GsVeiva~G~~~~v~~~~~~l~~g 65 (92)
T COG1254 42 GSVEIVAEGPDEAVEKFIEWLRKG 65 (92)
T ss_pred CeEEEEEEcCHHHHHHHHHHHHhC
Confidence 789999999999999999988865
No 15
>PF07428 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR009992 This family represents a conserved region approximately 400 residues long within 15-O-acetyltransferase (Tri3), which seems to be restricted to ascomycete fungi. In Fusarium sporotrichioides, this is required for acetylation of the C-15 hydroxyl group of trichothecenes in the biosynthesis of T-2 toxin [].; PDB: 3FP0_A 3FOT_A.
Probab=29.07 E-value=72 Score=29.80 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=23.1
Q ss_pred CCCCcEEEEEEecCCCCCCCCCCcCCccccccccccc
Q 047536 38 DDDTLYHFMAPSDRRGRFELPFPLTYFGNCLARLSAS 74 (237)
Q Consensus 38 ~~~~~s~l~~~vd~R~rl~p~lp~~Y~GN~v~~~~~~ 74 (237)
++++....-.+||+|+++++..-.+|++-|-..+.+.
T Consensus 319 ~D~~~~isp~~v~GRR~Lr~~~a~~~Y~~cqt~a~V~ 355 (413)
T PF07428_consen 319 PDSQAFISPMPVNGRRWLRPKIAKNYYAICQTAAVVR 355 (413)
T ss_dssp -TT--EEEEEEEE-GGGB-HHHHTS--S--EEEEEEE
T ss_pred CCcceEecccccCcchhcccchhhhhhhhhhccceEE
Confidence 3445567788999999999888889999998887775
No 16
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=28.12 E-value=27 Score=27.59 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=11.4
Q ss_pred CCCCCCCcCCcccc
Q 047536 54 RFELPFPLTYFGNC 67 (237)
Q Consensus 54 rl~p~lp~~Y~GN~ 67 (237)
.+.|-.|+.||||.
T Consensus 13 ~igpi~p~syfgn~ 26 (142)
T PF05660_consen 13 PIGPIDPDSYFGNP 26 (142)
T ss_pred ccCCcCchhccCCC
Confidence 45677899999995
No 17
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=27.71 E-value=57 Score=26.57 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=32.7
Q ss_pred CcEEEEEecCHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhhhhhccc
Q 047536 171 GGVEIGFVIGRHQLDFFNAIIEQGLNIQLAVSSTALMTGFRSDPTLLDYRKS 222 (237)
Q Consensus 171 Gg~ev~v~L~~e~M~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (237)
|-+.+.+. .++.|+.+++.|.+.+-.-+.+ . .+.-.|..|||-||-|-
T Consensus 74 GrI~le~~-~~~~i~~I~eiC~e~~pF~y~i--~-~g~f~r~~~TvtDY~Ky 121 (150)
T TIGR03260 74 GRIILELE-DEDIVEEIEEICKEMLPFGYEV--R-VGKFLRTKPTVTDYIKY 121 (150)
T ss_pred eEEEEEec-CHHHHHHHHHHHHhhCCCceEe--e-eeeEeecCCchhhhhhh
Confidence 33555544 5789999999999987632221 1 12247999999999876
No 18
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=24.11 E-value=74 Score=25.94 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=31.1
Q ss_pred EEEEEecCHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhhhhhccc
Q 047536 173 VEIGFVIGRHQLDFFNAIIEQGLNIQLAVSSTALMTGFRSDPTLLDYRKS 222 (237)
Q Consensus 173 ~ev~v~L~~e~M~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (237)
+.+.+.=..+.|+.+++.|.++|-+-+-+ --+.--|..|||-||-|-
T Consensus 85 i~~eie~e~~~~e~ie~ic~e~lPf~y~v---~vG~F~r~kpTVTDy~Ky 131 (165)
T COG4055 85 IILEIEDEDETMEKIEEICDEMLPFGYEV---RVGKFTRRKPTVTDYIKY 131 (165)
T ss_pred EEEEecCcHhHHHHHHHHHHHhCCCceee---eeeeeeccCCcchhhhhh
Confidence 44444333347999999999988653332 123345899999999764
Done!