BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047538
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein
Length = 133
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
E VL + VY IPPR S YRA +W +++ W G L++ SKG+ IKLEDK +GE
Sbjct: 8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGE 67
Query: 89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
L+A+A + + VE V DSSRYFV+RI++ G R AFIGIGF +R +A+DF +L
Sbjct: 68 LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124
Query: 149 DHMKYL 154
DH K++
Sbjct: 125 DHFKWV 130
>pdb|1WJR|A Chain A, Solution Structure Of The 2nd Mbt Domain From Human
Kiaa1617 Protein
Length = 127
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Query: 111 RYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
+Y+++ + EN+GGRLR ++G+ E TE+YD
Sbjct: 28 QYWIVSVIENVGGRLRLRYVGL---EDTESYD 56
>pdb|1OYX|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OYX|B Chain B, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OYX|C Chain C, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OZ3|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
pdb|1OZ3|B Chain B, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
pdb|1OZ3|C Chain C, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
Length = 331
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 62 WAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENI 121
W+WE L+ + +D F +L ++P S YF+L + E
Sbjct: 10 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGXKLEGIDPQ-HPSXYFILTVAEVC 68
Query: 122 GGRLRHAFIGIGFRERTEAYDF 143
G RLR F G +E +DF
Sbjct: 69 GYRLRLHFDGY-----SECHDF 85
>pdb|2DU5|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU5|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU6|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
pdb|2DU6|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
Length = 534
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 81 LEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRE 136
L ++S ELY R G+ HP+ I RLR A++ IGF E
Sbjct: 27 LAERSPNELYPRVGFSFGKEHPLFATIQ---------------RLREAYLSIGFSE 67
>pdb|2DU3|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU3|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
pdb|2DU4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
Length = 534
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 81 LEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRE 136
L ++S ELY R G+ HP+ I RLR A++ IGF E
Sbjct: 27 LAERSPNELYPRVGFSFGKEHPLFATIQ---------------RLREAYLSIGFSE 67
>pdb|2RHI|A Chain A, Crystal Structure Of The 3-mbt Domain From Human L3mbtl1
In Complex With H1.5k27me2 At 1.66 Angstrom
pdb|2RHX|A Chain A, Crystal Structure Of The 3-mbt Repeats From Human L3mbtl1
Bound To Dimethyl-lysine
Length = 345
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 62 WAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENI 121
W+WE L+ + +D F +L ++P S YF+L + E
Sbjct: 15 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQ-HPSMYFILTVAEVC 73
Query: 122 GGRLRHAFIGIGFRERTEAYDF 143
G RLR F G +E +DF
Sbjct: 74 GYRLRLHFDGY-----SECHDF 90
>pdb|1QMY|A Chain A, Fmdv Leader Protease (lbshort-c51a-c133s)
pdb|1QMY|B Chain B, Fmdv Leader Protease (lbshort-c51a-c133s)
pdb|1QMY|C Chain C, Fmdv Leader Protease (lbshort-c51a-c133s)
Length = 167
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 57 WNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVL 115
WN+ G+ E C++ D S + +A FL KG+ H V + S+ ++ +
Sbjct: 77 WNIKHLLHTGIGTASRPSEVCVVDGTDMSLADFHAGIFL-KGQEHAVFACVTSNGWYAI 134
>pdb|1OZ2|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-Ii) At 1.55 Angstrom
Length = 331
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 62 WAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENI 121
W+WE L+ + +D F +L ++P S YF+L + E
Sbjct: 10 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQ-HPSMYFILTVAEVC 68
Query: 122 GGRLRHAFIGIGFRERTEAYDF 143
G RLR F G +E +DF
Sbjct: 69 GYRLRLHFDGY-----SECHDF 85
>pdb|2PQW|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17- 25), Trigonal Form
pdb|3P8H|A Chain A, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|B Chain B, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|C Chain C, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
Length = 323
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 62 WAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENI 121
W+WE L+ + +D F +L ++P S YF+L + E
Sbjct: 7 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQ-HPSMYFILTVAEVC 65
Query: 122 GGRLRHAFIGIGFRERTEAYDF 143
G RLR F G +E +DF
Sbjct: 66 GYRLRLHFDGY-----SECHDF 82
>pdb|3OQ5|A Chain A, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|B Chain B, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|C Chain C, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
Length = 345
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 62 WAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENI 121
W+WE L+ + +D F +L ++P S YF+L + E
Sbjct: 21 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQ-HPSMYFILTVAEVC 79
Query: 122 GGRLRHAFIGIGFRERTEAYDF 143
G RLR F G +E +DF
Sbjct: 80 GYRLRLHFDGY-----SECHDF 96
>pdb|2RJC|A Chain A, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|B Chain B, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|C Chain C, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJD|A Chain A, Crystal Structure Of L3mbtl1 Protein
pdb|2RJE|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|B Chain B, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJF|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|E Chain E, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|3UWN|A Chain A, The 3-Mbt Repeat Domain Of L3mbtl1 In Complex With A
Methyl-Lysine Mimic
Length = 331
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 62 WAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENI 121
W+WE L+ + +D F +L ++P S YF+L + E
Sbjct: 7 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQ-HPSMYFILTVAEVC 65
Query: 122 GGRLRHAFIGIGFRERTEAYDF 143
G RLR F G +E +DF
Sbjct: 66 GYRLRLHFDGY-----SECHDF 82
>pdb|2RHY|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Monomethyl-Lysine
Length = 319
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 59 VNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIE 118
+ W+WE L+ + +D F +L ++P S YF+L +
Sbjct: 3 LGSWSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQ-HPSMYFILTVA 61
Query: 119 ENIGGRLRHAFIGIGFRERTEAYDF 143
E G RLR F G +E +DF
Sbjct: 62 EVCGYRLRLHFDGY-----SEXHDF 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,570,405
Number of Sequences: 62578
Number of extensions: 335114
Number of successful extensions: 651
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 24
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)