BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047538
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5E9Q4|NECP2_BOVIN Adaptin ear-binding coat-associated protein 2 OS=Bos taurus
GN=NECAP2 PE=2 SV=1
Length = 266
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 147/276 (53%), Gaps = 40/276 (14%)
Query: 23 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLE 82
EE E E VL + +VY IPPR + YRA EW +++ +W G L++ +KG+ IKLE
Sbjct: 2 EEAE-YESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLE 60
Query: 83 DKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
D+++GEL+A+A + + VE V DSSRYFV+RIE+ G R AFIGIGF +R +A+D
Sbjct: 61 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFD 117
Query: 143 FQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHL-----KNKSSGRVKS 197
F AL DH K++ ++ + Q +D S KEG+T+ L++ K+ ++G ++
Sbjct: 118 FNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIASMKKKDGAAGTPRA 177
Query: 198 KFFEQGLNDLSLDDKGNRKEPVICLKPLPPPP----APLSPATAARMSPSNSPQKFSLEG 253
+ G LSL LPPPP A L+P + +S S + ++
Sbjct: 178 RPTSTG--GLSL---------------LPPPPGAKTAALAPLSGEHLSVGGSVVQPAVSP 220
Query: 254 SSKDASPDSTKEDSKEQHSPESPNTEDIPDDDFGDF 289
SS A+ S Q P + T DI +GDF
Sbjct: 221 SSGGAT------VSWPQPKPATTATADI----WGDF 246
>sp|Q8NC96|NECP1_HUMAN Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens
GN=NECAP1 PE=1 SV=2
Length = 275
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 139/267 (52%), Gaps = 19/267 (7%)
Query: 29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
E VL + VY IPPR S YRA +W +++ W G L++ SKG+ IKLEDK +GE
Sbjct: 8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGE 67
Query: 89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
L+A+A + + VE V DSSRYFV+RI++ G R AFIGIGF +R +A+DF +L
Sbjct: 68 LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124
Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHL---HLKNKSSGRVKSKFFEQGLN 205
DH K++ ++ + Q+ + +D KEG+T+ L ++ NK G K + G
Sbjct: 125 DHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPRTARGGGL 184
Query: 206 DLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASPDSTKE 265
L G + +PPP + S A + ++P P K + GS D D
Sbjct: 185 SLLPPPPGGKVT-------IPPPSS--SVAISNHVTPPPIP-KSNHGGSDADILLD---L 231
Query: 266 DSKEQHSPESPNTEDIPDDDFGDFQAA 292
DS + +P + +D +GDF A
Sbjct: 232 DSPAPVTTPAPTPVSVSNDLWGDFSTA 258
>sp|Q3T093|NECP1_BOVIN Adaptin ear-binding coat-associated protein 1 OS=Bos taurus
GN=NECAP1 PE=2 SV=1
Length = 275
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 23/205 (11%)
Query: 29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
E VL + VY IPPR S YRA +W +++ W G L++ SKG+ IKLEDK +GE
Sbjct: 8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGE 67
Query: 89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
L+A+A + + VE V DSSRYFV+RI++ G R AFIGIGF +R +A+DF +L
Sbjct: 68 LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFSDRGDAFDFNVSLQ 124
Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN---KSSGRVKSKFFEQGLN 205
DH K++ ++ + Q+ S +D KEG+T+ L + N K G K K G
Sbjct: 125 DHFKWVKQESEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITTKKGGTSKPK--TAGTG 182
Query: 206 DLSLDDKGNRKEPVICLKPLPPPPA 230
LSL LPPPP
Sbjct: 183 GLSL---------------LPPPPG 192
>sp|Q681Q7|Y1390_ARATH Uncharacterized protein At1g03900 OS=Arabidopsis thaliana
GN=At1g03900 PE=2 SV=1
Length = 272
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 27 AIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKST 86
E L V E VY IPPR ++ Y+ EW + W G L+VVS + C I+LED ++
Sbjct: 11 TFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNS 70
Query: 87 GELYARAFLRKGEL-HPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQA 145
G+L+A F+ G + VEP +DSSRYFVLRI++ GR ++AFIG+GF ER EA+DF
Sbjct: 71 GDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDD---GRGKYAFIGLGFAERNEAFDFNV 127
Query: 146 ALHDHMKYLDKKKTAE-----EMEQQFQSTSAVDYSLKEGETLHLHLKNK 190
AL DH KY+ ++K E E + AV++ LKEGET+ +++K K
Sbjct: 128 ALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPK 177
>sp|Q6P756|NECP2_RAT Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus
GN=Necap2 PE=1 SV=2
Length = 263
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 138/271 (50%), Gaps = 33/271 (12%)
Query: 23 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLE 82
EE+E E VL E +VY IPPR + YRA EW +++ +W G L++ +KG+ IKLE
Sbjct: 2 EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLE 60
Query: 83 DKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
D+++GEL+A+A + + VE V DSSRYFV+RIE+ G R AFIGIGF +R +A+D
Sbjct: 61 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFD 117
Query: 143 FQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQ 202
F AL DH K++ ++ + Q +D KEG+T+ +++ N ++ K
Sbjct: 118 FNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKEGQTIKINIAN-----MRKKEGAA 172
Query: 203 GLNDLSLDDKGNRKEPVICLKPLPPPPA----PLSPATAARMSPSNSPQKFSLEGSSKDA 258
G G L LPPPP L P + + S + Q S G + +
Sbjct: 173 GAPRTRPASAGG-------LSLLPPPPGGKMSTLIPPSGEQFSGGSLVQPVSGSGGATEL 225
Query: 259 SPDSTKEDSKEQHSPESPNTEDIPDDDFGDF 289
P Q P + T DI +GDF
Sbjct: 226 WP---------QSKPAAAATADI----WGDF 243
>sp|Q9CR95|NECP1_MOUSE Adaptin ear-binding coat-associated protein 1 OS=Mus musculus
GN=Necap1 PE=1 SV=2
Length = 275
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 135/269 (50%), Gaps = 23/269 (8%)
Query: 29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
E VL + VY IPPR S YRA +W +++ W G L++ SKG+ IKLEDK +GE
Sbjct: 8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGE 67
Query: 89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
L+A+A + + VE V DSSRYFV+RI++ G R AFIGIGF +R +A+DF +L
Sbjct: 68 LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124
Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGR-VKSKFFEQGLNDL 207
DH K++ ++ + Q+ + +D KEG+T+ L + N ++ + SK G L
Sbjct: 125 DHFKWVKQETEISKESQEMDNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPRASGTGGL 184
Query: 208 SLDDKGNRKEPVICLKPLPPPPAP----LSPATAARMSPSNSPQKFSLEGSSKDASPDST 263
SL LPPPP P+++ +S +P + S
Sbjct: 185 SL---------------LPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHGGNDSDILL 229
Query: 264 KEDSKEQHSPESPNTEDIPDDDFGDFQAA 292
DS S +P +D +GDF A
Sbjct: 230 DLDSPAPVSTSAPAPVSTSNDLWGDFSTA 258
>sp|P69682|NECP1_RAT Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus
GN=Necap1 PE=1 SV=1
Length = 277
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 113/203 (55%), Gaps = 19/203 (9%)
Query: 29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
E VL + VY IPPR S YRA +W +++ W G L++ SKG+ IKLEDK +GE
Sbjct: 8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGE 67
Query: 89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
L+A+A + + VE V DSSRYFV+RI++ G R AFIGIGF +R +A+DF +L
Sbjct: 68 LFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124
Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGR-VKSKFFEQGLNDL 207
DH K++ ++ + Q+ S +D KEG+T+ L + N ++ + SK G L
Sbjct: 125 DHFKWVKQETEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITAKKGGTSKPRASGTGGL 184
Query: 208 SLDDKGNRKEPVICLKPLPPPPA 230
SL LPPPP
Sbjct: 185 SL---------------LPPPPG 192
>sp|Q5R630|NECP1_PONAB Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii
GN=NECAP1 PE=2 SV=1
Length = 275
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 138/267 (51%), Gaps = 19/267 (7%)
Query: 29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
E VL + VY IPPR S YRA +W +++ W G L++ SKG+ IKLEDK +GE
Sbjct: 8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGE 67
Query: 89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
L+A+A + + VE V DSSRYFV+RI++ G R AFIGIGF +R +A+DF +L
Sbjct: 68 LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124
Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHL---HLKNKSSGRVKSKFFEQGLN 205
DH K++ ++ + Q+ + +D KEG+T+ L ++ NK G K + G
Sbjct: 125 DHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLSIGNITNKEGGASKPRTARGGGL 184
Query: 206 DLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASPDSTKE 265
L G + +PPP + S A + ++P P K + GS D D
Sbjct: 185 SLLPPPPGGKVT-------IPPPSS--SVAISNHVTPPPIP-KSNHGGSDADILLD---L 231
Query: 266 DSKEQHSPESPNTEDIPDDDFGDFQAA 292
DS + +P +D +GDF A
Sbjct: 232 DSPAPVTTPAPTPVSASNDLWGDFSTA 258
>sp|Q9NVZ3|NECP2_HUMAN Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens
GN=NECAP2 PE=1 SV=1
Length = 263
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 3/166 (1%)
Query: 24 ETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLED 83
E E VL + +VY IPPR + YRA EW +++ +W G L++ +KG+ IKLED
Sbjct: 2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLED 61
Query: 84 KSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDF 143
+++GEL+A+A + + VE V DSSRYFV+RIE+ G R AFIGIGF +R +A+DF
Sbjct: 62 RTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFDF 118
Query: 144 QAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN 189
AL DH K++ ++ + Q +D KEG+T+ L++ N
Sbjct: 119 NVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIAN 164
>sp|Q9D1J1|NECP2_MOUSE Adaptin ear-binding coat-associated protein 2 OS=Mus musculus
GN=Necap2 PE=1 SV=1
Length = 266
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 141/270 (52%), Gaps = 28/270 (10%)
Query: 23 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLE 82
EE+E E VL E +VY IPPR + YRA EW +++ +W G L++ +KG+ IKLE
Sbjct: 2 EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLE 60
Query: 83 DKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
D+++GEL+A+A + + VE V DSSRYFV+RIE+ G R AFIG+GF +R +A+D
Sbjct: 61 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGLGFGDRGDAFD 117
Query: 143 FQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQ 202
F AL DH K++ ++ + Q +D K+G+T+ +++ N ++ K
Sbjct: 118 FNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKDGQTIKINIAN-----MRKKEGAA 172
Query: 203 GLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASPDS 262
G G L LPPPP S + + PS ++ S+ GS + S
Sbjct: 173 GTPRARPTSAGG-------LSLLPPPPGGKS---STVIPPSG--EQLSVGGSLVQPAVVS 220
Query: 263 TKEDSKE---QHSPESPNTEDIPDDDFGDF 289
+ E Q P + T DI +GDF
Sbjct: 221 GSGGATELWPQSKPAAAATADI----WGDF 246
>sp|Q9VXB0|NECAP_DROME NECAP-like protein CG9132 OS=Drosophila melanogaster GN=CG9132 PE=2
SV=1
Length = 246
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 133/255 (52%), Gaps = 31/255 (12%)
Query: 29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
E VL E ++Y IPPR S YRA +WN+ + W G +++V+KG ++KLEDK++G
Sbjct: 4 ESVLIVKPEVFIYKIPPRASNRGYRAGDWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSGA 63
Query: 89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
L+A + +E V DSSRYFV+R++++ G R AF+G+GF +R++++D AL
Sbjct: 64 LFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNG---RSAFLGLGFGDRSDSFDLNVALQ 120
Query: 149 DHMKYLDKKKTAEEME-QQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQGLNDL 207
DH K++ K E++E ++ + +D KEGET+ +++ R+ K +G +
Sbjct: 121 DHFKWV---KNQEQIEKEKTEPKQELDLGFKEGETIKINM------RITKKDGSEG-SSR 170
Query: 208 SLDDKGNRKEPVICLKPLPPPPAPLSPA----------TAARMSPSNSPQKFSLEGSSKD 257
+ +KG+ LPPPP L T R SP SP G S+
Sbjct: 171 TGKNKGSSGV-------LPPPPGGLGKIAPPPAAAAANTTVRQSPGVSPAHRPAAGGSEW 223
Query: 258 ASPDSTKEDSKEQHS 272
S + +Q+S
Sbjct: 224 TDYASAGGNQGQQNS 238
>sp|Q5DTW2|SMBT2_MOUSE Scm-like with four MBT domains protein 2 OS=Mus musculus GN=Sfmbt2
PE=2 SV=2
Length = 938
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Query: 111 RYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
+Y+++ + EN+GGRLR ++G+ E TE+YD
Sbjct: 201 QYWIVSVTENVGGRLRLRYVGL---EHTESYD 229
>sp|Q5VUG0|SMBT2_HUMAN Scm-like with four MBT domains protein 2 OS=Homo sapiens GN=SFMBT2
PE=1 SV=1
Length = 894
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Query: 111 RYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
+Y+++ + EN+GGRLR ++G+ E TE+YD
Sbjct: 202 QYWIVSVIENVGGRLRLRYVGL---EDTESYD 230
>sp|Q51342|PUR1_PSEAE Amidophosphoribosyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=purF
PE=3 SV=3
Length = 501
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 87 GELYARAFLRKGELHPVEPVI---DSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDF 143
GE A LR+ H ++ VI D+SR L + +G + R F+ + RT
Sbjct: 278 GEKLADKILRERPDHDIDVVIPIPDTSRTAALELANRLGVKFREGFVKNRYIGRTFIMPG 337
Query: 144 QAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFF 200
QAA K + +K A E+E + ++ VD S+ G T ++ K+ +F
Sbjct: 338 QAA---RKKSVRQKLNAIELEFRGKNVMLVDDSIVRGTTCKQIIQMAREAGAKNVYF 391
>sp|Q7TSE6|ST38L_MOUSE Serine/threonine-protein kinase 38-like OS=Mus musculus GN=Stk38l
PE=1 SV=2
Length = 464
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 68 LKVVSKGEECIIKL-EDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENI----- 121
LKV+ +G ++L + K TG +YA LRK ++ E V +R E +I
Sbjct: 93 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAH------IRAERDILVEAD 146
Query: 122 GGRLRHAFIGIGFRERTEAYDFQAAL--HDHMKYLDKKKTAEEMEQQFQSTSAV 173
G + F F+++ Y L D M L KK T E E QF + V
Sbjct: 147 GAWVVKMF--YSFQDKRNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYISETV 198
>sp|Q9Y2H1|ST38L_HUMAN Serine/threonine-protein kinase 38-like OS=Homo sapiens GN=STK38L
PE=1 SV=3
Length = 464
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 68 LKVVSKGEECIIKL-EDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENI----- 121
LKV+ +G ++L + K TG +YA LRK ++ E V +R E +I
Sbjct: 93 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKSDMLEKEQVAH------IRAERDILVEAD 146
Query: 122 GGRLRHAFIGIGFRERTEAYDFQAAL--HDHMKYLDKKKTAEEMEQQFQSTSAV 173
G + F F+++ Y L D M L KK T E E QF + V
Sbjct: 147 GAWVVKMF--YSFQDKRNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYISETV 198
>sp|A5UUN1|FPG_ROSS1 Formamidopyrimidine-DNA glycosylase OS=Roseiflexus sp. (strain
RS-1) GN=mutM PE=3 SV=1
Length = 273
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 85 STGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIG--FRERTEAYD 142
G +YA L + +HP+ P D S V + + I LR A G R+ +Y
Sbjct: 170 GIGNIYADEALWRARIHPLRPASDLSADEVAALHDGIRAALRQALTNGGSTLRDYRNSYG 229
Query: 143 FQAALHDHMKYLDK 156
+ DH D+
Sbjct: 230 TRGTNQDHFNAYDR 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,376,294
Number of Sequences: 539616
Number of extensions: 5119375
Number of successful extensions: 26968
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 26177
Number of HSP's gapped (non-prelim): 801
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)