BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047539
         (87 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AGB|A Chain A, F218v Mutant Of The Substrate-Free Form Of Red
          Chlorophyll Catabolite Reductase From Arabidopsis
          Thaliana
 pdb|3AGB|B Chain B, F218v Mutant Of The Substrate-Free Form Of Red
          Chlorophyll Catabolite Reductase From Arabidopsis
          Thaliana
 pdb|3AGC|A Chain A, F218v Mutant Of The Substrate-Bound Red Chlorophyll
          Catabolite Reductase From Arabidopsis Thaliana
 pdb|3AGC|B Chain B, F218v Mutant Of The Substrate-Bound Red Chlorophyll
          Catabolite Reductase From Arabidopsis Thaliana
          Length = 276

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 69 NFMQKMLLPCGLPPE 83
          N +Q  LLPC LPP+
Sbjct: 32 NRLQSQLLPCNLPPD 46


>pdb|3AGA|A Chain A, Crystal Structure Of Rcc-Bound Red Chlorophyll
          Catabolite Reductase From Arabidopsis Thaliana
 pdb|3AGA|B Chain B, Crystal Structure Of Rcc-Bound Red Chlorophyll
          Catabolite Reductase From Arabidopsis Thaliana
          Length = 276

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 69 NFMQKMLLPCGLPPE 83
          N +Q  LLPC LPP+
Sbjct: 32 NRLQSQLLPCNLPPD 46


>pdb|2ZXK|A Chain A, Crystal Structure Of Semet-Red Chlorophyll Catabolite
          Reductase
 pdb|2ZXK|B Chain B, Crystal Structure Of Semet-Red Chlorophyll Catabolite
          Reductase
          Length = 285

 Score = 26.2 bits (56), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 69 NFMQKMLLPCGLPPE 83
          N +Q  LLPC LPP+
Sbjct: 41 NRLQSQLLPCNLPPD 55


>pdb|2ZXL|A Chain A, Crystal Structure Of Red Chlorophyll Catabolite
          Reductase From Arabidopsis Thaliana
 pdb|2ZXL|B Chain B, Crystal Structure Of Red Chlorophyll Catabolite
          Reductase From Arabidopsis Thaliana
          Length = 285

 Score = 26.2 bits (56), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 69 NFMQKMLLPCGLPPE 83
          N +Q  LLPC LPP+
Sbjct: 41 NRLQSQLLPCNLPPD 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,734,683
Number of Sequences: 62578
Number of extensions: 93282
Number of successful extensions: 239
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 4
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)