BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047539
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LW64|SF3BA_ARATH Uncharacterized protein At3g23325 OS=Arabidopsis thaliana
GN=At3g23325 PE=3 SV=1
Length = 87
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 85/87 (97%)
Query: 1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAEN
Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60
Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
ESIGRE YNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87
>sp|P58728|SF3BB_ARATH Uncharacterized protein At4g14342 OS=Arabidopsis thaliana
GN=At4g14342 PE=3 SV=1
Length = 87
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 86/87 (98%)
Query: 1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAEN
Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60
Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
ESIGRE YNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87
>sp|Q9VHI4|SF3B5_DROME Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster
GN=CG11985 PE=1 SV=1
Length = 85
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 66/83 (79%)
Query: 5 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIG 64
+R+NI+SQLEHLQ+KY+GTGHAD +FEW N RDS ASY+GHY +L YFAIAENES
Sbjct: 3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62
Query: 65 REHYNFMQKMLLPCGLPPEREDD 87
R +N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85
>sp|Q9BWJ5|SF3B5_HUMAN Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1
Length = 86
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 66/84 (78%)
Query: 4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
+DR+ I+SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES
Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61
Query: 64 GREHYNFMQKMLLPCGLPPEREDD 87
R +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85
>sp|Q56K13|SF3B5_BOVIN Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1
Length = 86
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 66/84 (78%)
Query: 4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
+DR+ I+SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES
Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61
Query: 64 GREHYNFMQKMLLPCGLPPEREDD 87
R +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85
>sp|Q923D4|SF3B5_MOUSE Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1
Length = 86
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 65/84 (77%)
Query: 4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
+DR+ I+SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES
Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61
Query: 64 GREHYNFMQKMLLPCGLPPEREDD 87
R +N M+KML P G P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPSGPPADKPEE 85
>sp|Q55BF5|SF3B5_DICDI Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5
PE=3 SV=1
Length = 94
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 64/84 (76%)
Query: 4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
S+R ++NSQLEHLQ +YVGTGHAD+++ EW N RDS +S+IGH L+ F+IAENES+
Sbjct: 2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESV 61
Query: 64 GREHYNFMQKMLLPCGLPPEREDD 87
GR YN + KM+ PCG P+ +D+
Sbjct: 62 GRVRYNTLTKMISPCGPAPKIKDN 85
>sp|Q9P7R6|YHV5_SCHPO Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC211.05 PE=3 SV=1
Length = 85
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
+DR ++LE LQA+YVG G+A ++EW VN RD+ +S +GH P+LAY A A E
Sbjct: 2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPR 61
Query: 64 GREHYNFMQKMLLPCGLPP 82
+ N ++KM++PCG PP
Sbjct: 62 VQVRKNLLEKMIMPCGPPP 80
>sp|P0C074|YSF3_YEAST RDS3 complex subunit 10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSF3 PE=1 SV=1
Length = 85
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 17 QAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENE 61
+ KY+G G R +W N++ D+ + GH L Y +++ +
Sbjct: 15 KQKYIGLGDESTTREQWQRNVRNDTLNTLQGHSASLEYVSLSRGD 59
>sp|Q09215|YP66_CAEEL Uncharacterized protein B0495.6 OS=Caenorhabditis elegans
GN=B0495.6 PE=4 SV=1
Length = 87
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 5 DRFNINSQLEHLQAKYVGTG 24
+RF++ +QLEHLQ+KY GT
Sbjct: 6 ERFHVLAQLEHLQSKYTGTA 25
>sp|P35588|HYPB_HYPLI Hypodermin-B OS=Hypoderma lineatum PE=1 SV=1
Length = 256
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 10 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSY 42
L L + VG AD+ F W V+IQR Y
Sbjct: 21 GGMLPQLDGRIVGGFEADIEDFPWQVSIQRGGY 53
>sp|P21325|RT67_ECOLX Retron EC67 protein OS=Escherichia coli PE=4 SV=1
Length = 586
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 8 NINSQLEHLQAKY---VGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIG 64
N+N + + KY + G ADL +F V +++YASY G P + +N++
Sbjct: 409 NLNIFKSNEKTKYFLDLSGGTADLKKF---VERYKNNYASYYGSVPKQPVIMVLDNDTGP 465
Query: 65 REHYNFMQKMLLPC 78
+ NF++ + C
Sbjct: 466 SDLLNFLRNKVKSC 479
>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3
Length = 4870
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 51 MLAYFAIAEN----ESIGREHYNFMQKMLLPCGLP 81
ML F + EN E I E Y+F + +LL CG+P
Sbjct: 1876 MLLNFQLGENCPCPEEIREELYDFHEDLLLHCGVP 1910
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,491,952
Number of Sequences: 539616
Number of extensions: 1121592
Number of successful extensions: 2171
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2159
Number of HSP's gapped (non-prelim): 16
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)