Query 047539
Match_columns 87
No_of_seqs 100 out of 138
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 21:15:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3o_A Transcription initiatio 50.6 9.5 0.00033 24.0 2.2 25 48-76 25-49 (75)
2 2wl8_A Peroxisomal biogenesis 39.8 8.5 0.00029 26.2 0.7 16 68-84 95-110 (126)
3 2y9u_A Tumor protein 63; apopt 37.2 14 0.00047 22.4 1.3 20 24-43 1-20 (69)
4 1ymm_C MBP peptide, HLA class 24.6 36 0.0012 17.6 1.4 17 69-85 6-22 (26)
5 2kes_A Synphilin-1; synphillin 16.7 73 0.0025 18.5 1.7 16 3-18 24-39 (48)
6 2lkw_A Membrane fusion protein 15.5 47 0.0016 17.0 0.6 12 73-84 6-17 (26)
7 1zj6_A ADP-ribosylation factor 13.5 77 0.0026 19.9 1.4 29 56-84 158-186 (187)
8 4dnd_A Syntaxin-10, SYN10; str 12.4 2.3E+02 0.0079 18.7 3.6 51 9-59 39-94 (130)
9 2cly_C ATP synthase coupling f 12.0 91 0.0031 19.7 1.4 20 8-30 39-58 (77)
10 1aie_A P53; oligomer, DNA; 1.5 11.2 1.1E+02 0.0036 16.3 1.2 13 63-75 8-20 (31)
No 1
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=50.64 E-value=9.5 Score=23.99 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.5
Q ss_pred ChhHHHHHHHhhCcchHHHHHHHHHHhhC
Q 047539 48 HYPMLAYFAIAENESIGREHYNFMQKMLL 76 (87)
Q Consensus 48 H~~lL~Y~aia~nes~~r~r~~ll~kM~~ 76 (87)
+++..+|+|.|.-| |+| +||||+..
T Consensus 25 ~~dv~~~iS~a~qe---RLr-~llekl~~ 49 (75)
T 1h3o_A 25 HPDVVSYVSHATQQ---RLQ-NLVEKISE 49 (75)
T ss_dssp CTTHHHHHHHHHHH---HHH-HHHHHHHC
T ss_pred ChhHHHHhHHHHHH---HHH-HHHHHHHH
Confidence 67888999999877 787 88898864
No 2
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=39.79 E-value=8.5 Score=26.22 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=12.4
Q ss_pred HHHHHHhhCCCCCCCCC
Q 047539 68 YNFMQKMLLPCGLPPER 84 (87)
Q Consensus 68 ~~ll~kM~~pcg~pp~~ 84 (87)
..++++| |-||.||..
T Consensus 95 ~~Lmq~m-Q~~G~PP~e 110 (126)
T 2wl8_A 95 LDLMQQL-QDLGHPPKE 110 (126)
T ss_dssp HHHHHHH-HHTCCCCGG
T ss_pred HHHHHHH-HHcCCCcHH
Confidence 5677887 569999964
No 3
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=37.22 E-value=14 Score=22.43 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=13.8
Q ss_pred CCCCccHHHHHHHhhhhhHh
Q 047539 24 GHADLNRFEWAVNIQRDSYA 43 (87)
Q Consensus 24 G~~DTTk~EW~tn~hRDT~a 43 (87)
|++|.|-.|||..|.=.-|+
T Consensus 1 ~~~d~sv~~WLd~i~m~~Y~ 20 (69)
T 2y9u_A 1 GSTDCSIVSFLARLGCSSCL 20 (69)
T ss_dssp --CCCBHHHHHHTTTCGGGH
T ss_pred CCCCCcHHHHHHHcCChHHH
Confidence 78999999999987543333
No 4
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=24.61 E-value=36 Score=17.62 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=13.8
Q ss_pred HHHHHhhCCCCCCCCCC
Q 047539 69 NFMQKMLLPCGLPPERE 85 (87)
Q Consensus 69 ~ll~kM~~pcg~pp~~~ 85 (87)
.|.+.|+.|-+|||...
T Consensus 6 HFFKNivspr~pp~~q~ 22 (26)
T 1ymm_C 6 HFFKNIVTPRGGSGGGG 22 (26)
T ss_pred hhhhhccCCCCCCCCcC
Confidence 46789999999998753
No 5
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=16.73 E-value=73 Score=18.46 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=13.1
Q ss_pred hhhHhhHHHHHHHHHh
Q 047539 3 ASDRFNINSQLEHLQA 18 (87)
Q Consensus 3 ~~dk~~~~~qle~Lq~ 18 (87)
..+|++.++||++|-.
T Consensus 24 t~~rv~lq~qlq~lle 39 (48)
T 2kes_A 24 TVERVTLQNQLQQFLE 39 (48)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3689999999999864
No 6
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=15.53 E-value=47 Score=16.96 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=9.0
Q ss_pred HhhCCCCCCCCC
Q 047539 73 KMLLPCGLPPER 84 (87)
Q Consensus 73 kM~~pcg~pp~~ 84 (87)
.++||-.|||..
T Consensus 6 sivqppapppna 17 (26)
T 2lkw_A 6 SIVQPPAPPPNA 17 (26)
T ss_pred ccccCCCcCCCe
Confidence 467888888854
No 7
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=13.45 E-value=77 Score=19.85 Aligned_cols=29 Identities=7% Similarity=0.027 Sum_probs=16.4
Q ss_pred HHhhCcchHHHHHHHHHHhhCCCCCCCCC
Q 047539 56 AIAENESIGREHYNFMQKMLLPCGLPPER 84 (87)
Q Consensus 56 aia~nes~~r~r~~ll~kM~~pcg~pp~~ 84 (87)
|...|+....+...+++.+..++.++|+.
T Consensus 158 Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~ 186 (187)
T 1zj6_A 158 CALTGEGLCQGLEWMMSRLKIRLEHHHHH 186 (187)
T ss_dssp BTTTTBTHHHHHHHHHHHHCC--------
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhhhhccC
Confidence 34458888889888988887777766653
No 8
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=12.39 E-value=2.3e+02 Score=18.71 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhcCCC----CCCccHHHHHHHhhhhhHhhhhC-ChhHHHHHHHhh
Q 047539 9 INSQLEHLQAKYVGTG----HADLNRFEWAVNIQRDSYASYIG-HYPMLAYFAIAE 59 (87)
Q Consensus 9 ~~~qle~Lq~KY~GtG----~~DTTk~EW~tn~hRDT~aS~~g-H~~lL~Y~aia~ 59 (87)
.-..++.|.++|..+. .+......|+++--+.++.++-- =..|-.=+.|++
T Consensus 39 sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 39 AVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666665433 22234688999999999988742 234444555665
No 9
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=12.03 E-value=91 Score=19.66 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhhhcCCCCCCccH
Q 047539 8 NINSQLEHLQAKYVGTGHADLNR 30 (87)
Q Consensus 8 ~~~~qle~Lq~KY~GtG~~DTTk 30 (87)
..+..++.|+..|-| | |.|+
T Consensus 39 el~~el~kL~~~YGg-g--Dm~k 58 (77)
T 2cly_C 39 DLDRELFKLKQMYGK-A--DMNT 58 (77)
T ss_dssp HHHHHHHHHHHHHCS-S--CTTS
T ss_pred HHHHHHHHHHHHHCc-c--hHhh
Confidence 456778899999977 5 6554
No 10
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=11.21 E-value=1.1e+02 Score=16.29 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHhh
Q 047539 63 IGREHYNFMQKML 75 (87)
Q Consensus 63 ~~r~r~~ll~kM~ 75 (87)
.+|-||+||+|+.
T Consensus 8 rGRe~yEml~ki~ 20 (31)
T 1aie_A 8 RGRERFEMFRELN 20 (31)
T ss_dssp CSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 4678899998864
Done!