Query 047539
Match_columns 87
No_of_seqs 100 out of 138
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 21:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047539.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047539hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g7la2 a.121.1.1 (A:87-230) P 37.1 21 0.0015 21.1 3.9 42 31-74 4-45 (144)
2 d2g7ga2 a.121.1.1 (A:74-205) P 28.3 39 0.0028 19.4 4.0 43 31-75 4-46 (132)
3 d1ucva_ a.60.1.2 (A:) Ephrin t 22.0 22 0.0016 19.8 1.8 21 24-44 4-24 (81)
4 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 19.8 45 0.0033 18.2 2.9 29 9-48 8-36 (59)
5 d1jmxa2 a.3.1.7 (A:86-162) Qui 18.6 8.6 0.00063 23.0 -0.6 28 28-60 29-56 (77)
6 d1z0xa2 a.121.1.1 (A:72-220) T 16.8 69 0.005 19.0 3.5 36 31-66 4-39 (149)
7 d1idra_ a.1.1.1 (A:) Protozoan 16.5 52 0.0038 19.2 2.8 50 31-83 21-70 (127)
8 d1pbya2 a.3.1.7 (A:86-165) Qui 16.4 11 0.00077 22.8 -0.6 28 28-60 29-56 (80)
9 d1su3a1 a.20.1.2 (A:32-98) Fib 16.3 29 0.0021 19.3 1.4 13 69-81 51-64 (67)
10 d1urua_ a.238.1.1 (A:) Amphiph 14.6 50 0.0037 19.9 2.4 18 23-40 3-20 (217)
No 1
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=37.14 E-value=21 Score=21.11 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=31.5
Q ss_pred HHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHh
Q 047539 31 FEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKM 74 (87)
Q Consensus 31 ~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~ll~kM 74 (87)
.||++...+.....+.-||.+...+.......+.-++ +++.+
T Consensus 4 r~~Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~--~~e~~ 45 (144)
T d2g7la2 4 REQLRAVLTSYTLVLFAHPQLARSALVARPSGENYLR--LVERV 45 (144)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHH--HHHHH
Confidence 4889999999999999999999988666655554433 34444
No 2
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=28.25 E-value=39 Score=19.38 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=31.1
Q ss_pred HHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhh
Q 047539 31 FEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKML 75 (87)
Q Consensus 31 ~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~ll~kM~ 75 (87)
.||++...+.-.+.+..||.+...+.-.-...+.. +.++++++
T Consensus 4 r~~lr~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~--l~~~e~~l 46 (132)
T d2g7ga2 4 DEAFSEWARSYRAAFSRHPTAIRLLATETVRDPGS--LSVYHSAA 46 (132)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGHHHHHTSCCCCHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHhhcCCCCChhH--HHHHHHHH
Confidence 58899999999999999999998776544444443 33445543
No 3
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.01 E-value=22 Score=19.82 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=15.9
Q ss_pred CCCCccHHHHHHHhhhhhHhh
Q 047539 24 GHADLNRFEWAVNIQRDSYAS 44 (87)
Q Consensus 24 G~~DTTk~EW~tn~hRDT~aS 44 (87)
|+.|+|=.|||..++=.-|+.
T Consensus 4 ~~~~~sV~~WL~~lgL~qY~~ 24 (81)
T d1ucva_ 4 GSSGLTVGDWLDSIRMGRYRD 24 (81)
T ss_dssp CCCCSBHHHHHHHTTCGGGHH
T ss_pred CCCCCcHHHHHHHCccHHHHH
Confidence 677899999999887544443
No 4
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.82 E-value=45 Score=18.21 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhcCCCCCCccHHHHHHHhhhhhHhhhhCC
Q 047539 9 INSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGH 48 (87)
Q Consensus 9 ~~~qle~Lq~KY~GtG~~DTTk~EW~tn~hRDT~aS~~gH 48 (87)
++.+||..-.||.+ |.+| ||| .+|..+|.
T Consensus 8 e~~~le~Al~~~P~-gt~~--RW~--------~IA~~vgk 36 (59)
T d2cqqa1 8 DLSQLTRSMVKFPG-GTPG--RWE--------KIAHELGR 36 (59)
T ss_dssp HHHHHHHHHHHSCT-TCTT--HHH--------HHHHHHTS
T ss_pred HHHHHHHHHHHCCC-CCcH--HHH--------HHHHHHCC
Confidence 56789999999987 5553 554 45666653
No 5
>d1jmxa2 a.3.1.7 (A:86-162) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=18.58 E-value=8.6 Score=23.04 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=22.0
Q ss_pred ccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhC
Q 047539 28 LNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60 (87)
Q Consensus 28 TTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~n 60 (87)
-|-.||-.-+| .++|+.+-|+|.|++..
T Consensus 29 Rt~~EW~~Lv~-----fHlGq~PtlEyqA~~RD 56 (77)
T d1jmxa2 29 RPAKEWEHLVN-----FHLGQWPSLEYQAQARD 56 (77)
T ss_dssp CCHHHHHHHHH-----HHHHHCGGGGGSTTTTT
T ss_pred CCHHHHHHHHH-----hhhccCchHHHHHhccc
Confidence 36678877665 78999999999887764
No 6
>d1z0xa2 a.121.1.1 (A:72-220) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=16.76 E-value=69 Score=18.99 Aligned_cols=36 Identities=11% Similarity=-0.039 Sum_probs=27.6
Q ss_pred HHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHH
Q 047539 31 FEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRE 66 (87)
Q Consensus 31 ~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~ 66 (87)
.|+|+...+.-...+.-||.++..+.-.....+..+
T Consensus 4 r~~L~~~a~~~~~~~~~hP~~~~l~~~~~~~~p~~l 39 (149)
T d1z0xa2 4 YSDLLAFMENYYDLYQQFPCAVAIEIQTVPAYPQRL 39 (149)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHTSCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHhhhccccchHHH
Confidence 477888888999999999999988765555555443
No 7
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=16.46 E-value=52 Score=19.23 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=38.9
Q ss_pred HHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhhCCCCCCCC
Q 047539 31 FEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPE 83 (87)
Q Consensus 31 ~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~ll~kM~~pcg~pp~ 83 (87)
++.+..+..+-|.-+..++.+-.||+ +....+.|..+.+=+.+=+|.|+.
T Consensus 21 ~~~I~~lv~~FY~~i~~d~~l~~~F~---~~d~~~~~~~~~~fl~~~~GGp~~ 70 (127)
T d1idra_ 21 HEAIEVVVEDFYVRVLADDQLSAFFS---GTNMSRLKGKQVEFFAAALGGPEP 70 (127)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTGGGGT---TCCHHHHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHHcChHHHHhcC---CCCHHHHHHHHHHHHHHHhCcCCC
Confidence 56777888899999999988888884 555667777777777777888874
No 8
>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=16.37 E-value=11 Score=22.78 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=21.7
Q ss_pred ccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhC
Q 047539 28 LNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60 (87)
Q Consensus 28 TTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~n 60 (87)
-|-.||-.-+| .++|+.+-|+|.|++..
T Consensus 29 Rt~~EW~~Lv~-----fHlGQ~PtlEyqA~~RD 56 (80)
T d1pbya2 29 RTPEDWKHLVN-----FHLGQFPTLEYQALARD 56 (80)
T ss_dssp ECHHHHHHHHH-----HHHHHCGGGGGSTTTTT
T ss_pred CCHHHHHHHHH-----hhhccCchHHHHHhccC
Confidence 36678876665 78999999999887653
No 9
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.27 E-value=29 Score=19.26 Aligned_cols=13 Identities=38% Similarity=0.948 Sum_probs=9.0
Q ss_pred HHHHHhhCC-CCCC
Q 047539 69 NFMQKMLLP-CGLP 81 (87)
Q Consensus 69 ~ll~kM~~p-cg~p 81 (87)
.-++.|.+| ||-|
T Consensus 51 ~T~~~M~~PRCGvp 64 (67)
T d1su3a1 51 ETLKVMKQPRCGVP 64 (67)
T ss_dssp HHHHHHTSCBCSSC
T ss_pred HHHHHHCCCCCCCC
Confidence 346778877 7765
No 10
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=14.56 E-value=50 Score=19.87 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHhhhh
Q 047539 23 TGHADLNRFEWAVNIQRD 40 (87)
Q Consensus 23 tG~~DTTk~EW~tn~hRD 40 (87)
+|.++.|.+||.....++
T Consensus 3 ~G~~~~T~D~~fe~~~~~ 20 (217)
T d1urua_ 3 LGKVDRTADEIFDDHLNN 20 (217)
T ss_dssp SSCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcccHHHHHHHHH
Done!