BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047540
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 290 bits (742), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 224/414 (54%), Gaps = 49/414 (11%)
Query: 3 PDPSNENANQDANSLFESITNNVMLQPFLDLLQKLKXXXXX--XXXXXXDGFMPFTVTAA 60
P + + +QD +L +S+ N L+P+ +LL +L D M FT+ AA
Sbjct: 77 PMEGDGDVSQDVPTLCQSVRKN-FLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAA 135
Query: 61 QQLGIPIALFFTIAARSFKGCMQLRTLEE----------------------------NTT 92
++ +P L+F+ +A S M R+ E N
Sbjct: 136 EEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFR 195
Query: 93 LTSLIDL------NSYATRXXXXXXXXXXXXXXXXXHTFDALERQVLDALSAMFPNLFTI 146
L ++D N +TF+ LE V++ALS+ P+++ I
Sbjct: 196 LKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPI 255
Query: 147 GPLQLLLNQINE-QGGNSLSSTGYKYNLWKEETECLQWLDSKELPNSVVYVNFGSSVYLT 205
GPL LL Q + +SL S NLWKE+TECL WL+SKE P SVVYVNFGS+ +T
Sbjct: 256 GPLPSLLKQTPQIHQLDSLDS-----NLWKEDTECLDWLESKE-PGSVVYVNFGSTTVMT 309
Query: 206 KQQLTEVAMGLVNSNHPFLWIIRPDLVTGETADMPSEFEVKAKETGFIARWCPQEEVLNH 265
+QL E A GL N FLWIIRPDLV G + SEF + + G IA WCPQ++VLNH
Sbjct: 310 PEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNH 369
Query: 266 PAVGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNCRYTCNEWGVGMDITNSGDDNQV 325
P++GGF TH GWNST ES+CAGVPM+CWPF DQ T+CR+ CNEW +GM+I D V
Sbjct: 370 PSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI-----DTNV 424
Query: 326 GRNEVEKLVRELMEGEKGMQMRNKASEWKRFAEEAAAPDGSSATNLEKLEQPVI 379
R E+ KL+ E++ G+KG +M+ KA E K+ AEE P G S NL K+ + V+
Sbjct: 425 KREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 138/264 (52%), Gaps = 33/264 (12%)
Query: 124 TFDALERQVLDALSAM---FPNLFTIGPLQLLLNQINEQGGNSLSSTGYKYNLWKEETEC 180
TF LE + AL P ++ +GPL + Q +Q EE+EC
Sbjct: 214 TFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ---------------TEESEC 258
Query: 181 LQWLDSKELPNSVVYVNFGSSVYLTKQQLTEVAMGLVNSNHPFLWIIR-PDLV------- 232
L+WLD++ L SV+YV+FGS LT +QL E+A+GL +S FLW+IR P +
Sbjct: 259 LKWLDNQPL-GSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFD 317
Query: 233 ----TGETADMPSEFEVKAKETGF-IARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAG 287
T +P F + K+ GF I W PQ +VL HP+ GGF TH GWNST+ES+ +G
Sbjct: 318 SHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSG 377
Query: 288 VPMICWPFLGDQATNCRYTCNEWGVGMDITNSGDDNQVGRNEVEKLVRELMEGEKGMQMR 347
+P+I WP +Q N + + +GDD V R EV ++V+ LMEGE+G +R
Sbjct: 378 IPLIAWPLYAEQKMNAVLLSEDIRAALR-PRAGDDGLVRREEVARVVKGLMEGEEGKGVR 436
Query: 348 NKASEWKRFAEEAAAPDGSSATNL 371
NK E K A DG+S L
Sbjct: 437 NKMKELKEAACRVLKDDGTSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 121/255 (47%), Gaps = 25/255 (9%)
Query: 124 TFDALERQVLDALSAMFPNLFTIGPLQLLLNQINEQGGNSLSSTGYKYNLWKEETECLQW 183
+F + + + L++ F L +GP L Q +E CL+W
Sbjct: 223 SFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVS----------------DEHGCLEW 266
Query: 184 LDSKELPNSVVYVNFGSSVYLTKQQLTEVAMGLVNSNHPFLWIIRPDLVTGETADMPSEF 243
LD E +SVVY++FGS V +LT +A L PF+W R D +P F
Sbjct: 267 LDQHE-NSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----PKEKLPKGF 321
Query: 244 EVKAKETGFIARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNC 303
+ K G I W PQ E+L H +VG F THSGWNS +E + GVPMI PF GDQ N
Sbjct: 322 LERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNT 381
Query: 304 RYTCNEWGVGMDITNSGDDNQVGRNEVEKLVRELMEGEKGMQMRNKASEWKRFAEEAAAP 363
T + +G+ + D+ + + ++K + M EKG MR K + K A +A
Sbjct: 382 ILTESVLEIGVGV----DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQ 437
Query: 364 DGSSATNLEKLEQPV 378
+G+SA + L Q V
Sbjct: 438 NGTSAMDFTTLIQIV 452
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 128/299 (42%), Gaps = 28/299 (9%)
Query: 82 MQLRTLEENTTLTSLIDLNSYATRXXXXXXXXXXXXXXXXXHTFDALERQVLDALSAMFP 141
++ R L+E +LNS +R ++F+ L+ + + L +
Sbjct: 182 VRFRDLQEGIVFG---NLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLK 238
Query: 142 NLFTIGPLQLLLNQINEQGGNSLSSTGYKYNLWKEETECLQWLDSKELPNSVVYVNFGSS 201
IGP L+ + T CLQWL ++ P SVVY++FG+
Sbjct: 239 TYLNIGPFNLITPP----------------PVVPNTTGCLQWLKERK-PTSVVYISFGTV 281
Query: 202 VYLTKQQLTEVAMGLVNSNHPFLWIIRPDLVTGETADMPSEFEVKAKETGFIARWCPQEE 261
++ ++ L S PF+W +R +P F K + G + W PQ E
Sbjct: 282 TTPPPAEVVALSEALEASRVPFIWSLR----DKARVHLPEGFLEKTRGYGMVVPWAPQAE 337
Query: 262 VLNHPAVGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNCRYTCNEWGVGMDITNSGD 321
VL H AVG F TH GWNS ES+ GVP+IC PF GDQ N R + +G+ I +
Sbjct: 338 VLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI----E 393
Query: 322 DNQVGRNEVEKLVRELMEGEKGMQMRNKASEWKRFAEEAAAPDGSSATNLEKLEQPVIK 380
++ + +++ EKG ++R + A+ A P GSS N L V K
Sbjct: 394 GGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 129/264 (48%), Gaps = 36/264 (13%)
Query: 123 HTFDALERQVLDAL---SAMFPNLFTIGPLQLLLNQINEQGGNSLSSTGYKYNLWKEETE 179
+TF LE+ +DAL P ++ +GPL L Q N + + +
Sbjct: 218 NTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQA------------QHDL 265
Query: 180 CLQWLDSKELPN-SVVYVNFGS-SVYLTKQQLTEVAMGLVNSNHPFLWIIRPDLVTGETA 237
L+WLD E P+ SVV++ FGS V Q+ E+A+GL +S FLW + E
Sbjct: 266 ILKWLD--EQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKK 318
Query: 238 DMPSEF----EVKAKETGFIARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICW 293
P F E++ K G I W PQ EVL H A+GGF +H GWNS +ES+ GVP++ W
Sbjct: 319 VFPEGFLEWMELEGK--GMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTW 376
Query: 294 PFLGDQATNCRYTCNEWGVGMDIT---NSGDDNQVGRNEVEKLVRELMEGEKGMQMRNKA 350
P +Q N EWGVG+ + G D V E+EK +++LM +K + K
Sbjct: 377 PIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSD-VVAAEEIEKGLKDLM--DKDSIVHKKV 433
Query: 351 SEWKRFAEEAAAPDGSSATNLEKL 374
E K + A GSS ++ KL
Sbjct: 434 QEMKEMSRNAVVDGGSSLISVGKL 457
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 129/264 (48%), Gaps = 36/264 (13%)
Query: 123 HTFDALERQVLDAL---SAMFPNLFTIGPLQLLLNQINEQGGNSLSSTGYKYNLWKEETE 179
+TF LE+ +DAL P ++ +GPL L Q N + + +
Sbjct: 218 NTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQA------------QHDL 265
Query: 180 CLQWLDSKELPN-SVVYVNFGS-SVYLTKQQLTEVAMGLVNSNHPFLWIIRPDLVTGETA 237
L+WLD E P+ SVV++ FGS V Q+ E+A+GL +S FLW + E
Sbjct: 266 ILKWLD--EQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKK 318
Query: 238 DMPSEF----EVKAKETGFIARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICW 293
P F E++ K G I W PQ EVL H A+GGF +H GWNS +ES+ GVP++ W
Sbjct: 319 VFPEGFLEWMELEGK--GMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTW 376
Query: 294 PFLGDQATNCRYTCNEWGVGMDIT---NSGDDNQVGRNEVEKLVRELMEGEKGMQMRNKA 350
P +Q N EWGVG+ + G D V E+EK +++LM +K + K
Sbjct: 377 PIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSD-VVAAEEIEKGLKDLM--DKDSIVHKKV 433
Query: 351 SEWKRFAEEAAAPDGSSATNLEKL 374
E K + A GSS ++ KL
Sbjct: 434 QEMKEMSRNAVVDGGSSLISVGKL 457
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 191 NSVVYVNFGSSVY-LTKQQLTEVAMGLVNSNHPFLWII---RPDLVTGETADMPSEFEVK 246
N VV + GS V T+++ +A L LW +PD + T
Sbjct: 21 NGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGNKPDTLGLNTR--------- 71
Query: 247 AKETGFIARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNCRY 305
+ +W PQ ++L HP F TH G N E++ G+P + P DQ N +
Sbjct: 72 ------LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAH 124
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 174 WKEETECLQWLDSKELPNSVVYVNFGSSVYLTKQQLTEVAMGLVNSNHPFLWIIRPDLVT 233
+ E+ + WL S++ +VY+ G+S T + L GL + L P L
Sbjct: 225 FAEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDV 284
Query: 234 GETADMPSEFEVKAKETGFIARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICW 293
++P+ +++ W PQ +L H V H G +T+ +L AGVP + +
Sbjct: 285 SGLGEVPANVRLES--------WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSF 334
Query: 294 PFLGD 298
P+ GD
Sbjct: 335 PWAGD 339
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 253 IARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNCRYTCNEWGV 312
+ +W PQ ++L F TH+G ST+E+L VPM+ P + +Q N E G+
Sbjct: 309 VHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 313 GMDI 316
G I
Sbjct: 366 GRHI 369
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 253 IARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNCRYTCNEWGV 312
+ W P +L H G + + +L AGVP P Q TN R G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLTGLGI 348
Query: 313 GMDITNSGDDNQVGRNEVEKLVRELMEGEKGMQMRNKASEWKRFAEEAA 361
G D + +G + +L+ + E +++R + SE AE AA
Sbjct: 349 GFD----AEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 253 IARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNCRYTCNEWGV 312
+ W P +L H G + + +L AGVP P Q TN R G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLTGLGI 348
Query: 313 GMDITNSGDDNQVGRNEVEKLVRELMEGEKGMQMRNKASEWKRFAEEAA 361
G D + +G + +L+ + E +++R + SE AE AA
Sbjct: 349 GFD----AEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 255 RWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNCRYTCNEWGVGM 314
+W P VL H TH + +E+ AGVP++ P +A E G+G
Sbjct: 287 QWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS 344
Query: 315 DITNSGDDNQVGRNEVEKL 333
+ + R VE+L
Sbjct: 345 VLRPDQLEPASIREAVERL 363
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 193 VVYVNFGSSVYLTKQ----QLTEVAMGLVNSNHPFLWIIRPDLVTGETADMPSEFEVKAK 248
VV V+ GS+ TKQ + A G + H L I R + E ++P EV
Sbjct: 234 VVLVSLGSA--FTKQPAFYRECVRAFGNLPGWHLVLQIGR-KVTPAELGELPDNVEVH-- 288
Query: 249 ETGFIARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNC 303
W PQ +L + F TH+G + E L PMI P DQ N
Sbjct: 289 ------DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 268 VGGFFTHSGWNSTIESLCAGVPMICWPFLGDQATNCRYTCNEWGVGMDITNSGDDNQVGR 327
VGG F + G ++ +E C G+P+I P+ + + + + G G ++ N
Sbjct: 283 VGGTFVNIGGHNLLEPTCWGIPVIYGPY-THKVNDLKEFLEKEGAGFEVKNE-------- 333
Query: 328 NEVEKLVRELMEGEKGMQMRNKASEWK 354
E+ + EL+ +K +++ K+ E K
Sbjct: 334 TELVTKLTELLSVKKEIKVEEKSREIK 360
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 230 DLVTGET-ADMPSEFEVKAKETGFIARWCPQEEVLNHPAVGGFFTHSGWNSTIESLCAGV 288
DLVT + M E E +A++ F A WC EE+++H F H E + AGV
Sbjct: 218 DLVTTDVWTSMGFEAENEARKRAF-ADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGV 276
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 202 VYLTKQQLT---EVAMGLVNSNHPFLWIIRPDLVTGETADMPSEF 243
+Y TK++ T EVA + + + + WI+ P LV G+T +PSEF
Sbjct: 200 LYCTKEEATYIFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 243
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 202 VYLTKQQLT---EVAMGLVNSNHPFLWIIRPDLVTGETADMPSEF 243
+Y TK++ T EVA + + + + WI+ P LV G+T +PSEF
Sbjct: 199 LYCTKEEATYIFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,746,339
Number of Sequences: 62578
Number of extensions: 414990
Number of successful extensions: 1341
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 23
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)