BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047542
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
Arabidopsis Thaliana Superman Protein
Length = 39
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 96 KGFLCNFCNKIFSTSQALGGHQNAH 120
+ + C+FC + F ++QALGGH N H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 96 KGFLCNFCNKIFSTSQALGGHQNAHKQER 124
K F C +CNK+F +L H H E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 45 NILFNQNIAIDNVSVTESEVELRLFSMGGTSNPQANESSSHESIRKKQPKQKGFLC 100
++LFN N NV +V+ F +S+P A+ +S +SI K+P FLC
Sbjct: 35 SLLFNYNNKFHNVL----QVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLC 86
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 95 QKGFLCNFCNKIFSTSQALGGHQNAH 120
++ F CNFC K + + L H+ AH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAH 27
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 95 QKGFLCNFCNKIFSTSQALGGHQNAHKQER 124
+K F+C FC + F+ S L H+ H ER
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDER 44
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 95 QKGFLCNFCNKIFSTSQALGGHQNAHKQER 124
+K ++C++C K F S L HQ H E+
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 95 QKGFLCNFCNKIFSTSQALGGHQNAHKQER 124
+K + CN C K+FS + L HQ H E+
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 96 KGFLCNFCNKIFSTSQALGGHQNAHKQER 124
K ++CN C K FS +L HQ H E+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 95 QKGFLCNFCNKIFSTSQALGGHQNAHKQER 124
+K + CN C K FS L HQ H E+
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 4.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 94 KQKGFLCNFCNKIFSTSQALGGHQNAHKQ 122
K+K F CN C K FS S+ L H+ H +
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 95 QKGFLCNFCNKIFSTSQALGGHQNAHKQER 124
+K + CN C K FS + L HQ H E+
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 92 QPKQKGFLCNFCNKIFSTSQALGGHQNAHKQER 124
+P +K + C C K FS S L HQ H E+
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEK 48
>pdb|2V5I|A Chain A, Structure Of The Receptor-binding Protein Of Bacteriophage
Det7: A Podoviral Tailspike In A Myovirus
Length = 559
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 163 LFNRSSPLGVSMQPMIRKPSYPWVPL-WDRFGGHGKTVMNAQLAYDKMRLESVMEAQNGG 221
+FN P V QP + + PWV WD GK + +A L ++ +S +E G
Sbjct: 76 IFNNMGPGSVINQPFMESKTTPWVIFPWD---ADGKWITDAALVAATLK-QSKIEGYQPG 131
Query: 222 V 222
V
Sbjct: 132 V 132
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 5.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 95 QKGFLCNFCNKIFSTSQALGGHQNAHKQER 124
+K F CN C K F+ S +L HQ H E+
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 96 KGFLCNFCNKIFSTSQALGGHQNAHKQER 124
K + CN C K FS + L HQ H E+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 95 QKGFLCNFCNKIFSTSQALGGHQNAHKQER 124
+K +CN C K F S L HQ H E+
Sbjct: 8 KKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.3 bits (59), Expect = 8.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 98 FLCNFCNKIFSTSQALGGHQNAHKQER 124
F+C C + F+ +AL H +H E+
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 27.3 bits (59), Expect = 9.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 98 FLCNFCNKIFSTSQALGGHQNAHKQERA 125
++CN CN FST AL H + ++ A
Sbjct: 99 YVCNVCNARFSTMSALSEHLRSDHRDDA 126
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.3 bits (59), Expect = 9.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 95 QKGFLCNFCNKIFSTSQALGGHQNAHKQE 123
+K + CN C K F S L H H QE
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 27.3 bits (59), Expect = 10.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 98 FLCNFCNKIFSTSQALGGHQNAHKQERA 125
++CN CN FST AL H + ++ A
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDDA 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,109,571
Number of Sequences: 62578
Number of extensions: 210546
Number of successful extensions: 525
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 52
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)