BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047544
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHGGNHPV +++ V I+AQNH +AVD ATLP + VTH +L DGT G+
Sbjct: 287 KFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKP 346
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S Q H EASPGP D+ +F F+EL++ + A
Sbjct: 347 AFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTA 381
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHGGNHPV +++ V I+AQNH +AVD ATLP + VTH +L DGT G+
Sbjct: 287 KFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKP 346
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S Q H EASPGP D+ +F F+EL++ + A
Sbjct: 347 AFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTA 381
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHGGNHPV +++ V I+AQNH +AVD ATLP + VTH +L DGT G+
Sbjct: 287 KFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKP 346
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S Q H EASPGP D+ +F F+EL++ + A
Sbjct: 347 AFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTA 381
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHGGNHPV +++ V I+AQNH +AVD ATLP + VTH +L DGT G+
Sbjct: 287 KFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKP 346
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S Q H EASPGP D+ +F F+EL++ + A
Sbjct: 347 AFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTA 381
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 2/94 (2%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHGGNHPV +++ V I+AQNH +AVD ATLP + VTH +L DGT G+
Sbjct: 286 KFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKP 345
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S Q + EASPGP D+ +F F+EL++ +YR
Sbjct: 346 AFSFQGNPEASPGPHDAAPLFDHFIELIE--QYR 377
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHGGNHPV +++ V I+AQNH +AVD ATLP + VTH +L DGT G+
Sbjct: 287 KFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKP 346
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S Q H EASP P D+ +F F+EL++ + A
Sbjct: 347 AFSFQGHPEASPFPHDAAPLFDHFIELIEQYRKTA 381
>pdb|3ZUA|A Chain A, A C39-Like Domain
Length = 142
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 3 GHHGGNHPVHNIQNG--RVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
G + H I G +EI AQ HN +V+P E+ H DGT GL L
Sbjct: 1 GAMANSDSCHKIDYGLYALEILAQYHNVSVNPE------EIKHRFDTDGTGLGLTSWLLA 54
Query: 61 VMSLQYHLE 69
SL+ ++
Sbjct: 55 AKSLELKVK 63
>pdb|2QHQ|A Chain A, Crystal Structure Of Unknown Function Protein Vpa0580
pdb|2QHQ|B Chain B, Crystal Structure Of Unknown Function Protein Vpa0580
Length = 125
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 27 NYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHL 68
NY PA G N N+G+C A+ LN + + L
Sbjct: 40 NYDFTPAAFTNGNTQNDANENNGSCXIFAFGLLNALDXEATL 81
>pdb|2QM2|A Chain A, Putative Hopj Type Iii Effector Protein From Vibrio
Parahaemolyticus
pdb|2QM2|B Chain B, Putative Hopj Type Iii Effector Protein From Vibrio
Parahaemolyticus
Length = 125
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 27 NYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHL 68
NY PA G N N+G+C A+ LN + + L
Sbjct: 40 NYDFTPAAFTNGNTQNDANENNGSCKIFAFGLLNALDKEATL 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,373,664
Number of Sequences: 62578
Number of extensions: 121569
Number of successful extensions: 293
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 9
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)