BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047544
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O66727|CARA_AQUAE Carbamoyl-phosphate synthase small chain OS=Aquifex aeolicus
(strain VF5) GN=carA PE=3 SV=1
Length = 371
Score = 116 bits (291), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/89 (53%), Positives = 70/89 (78%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHGGNHPV +++ G++EI+AQNHN+A+DP +LP+ VEVTH+NL D T G+ + L
Sbjct: 282 KFGHHGGNHPVKDLRTGKIEITAQNHNFAIDPESLPEDVEVTHLNLLDNTVEGIKHKHLP 341
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMK 89
+ ++QYH E SPGP DS +F++FV++ +
Sbjct: 342 IFAVQYHPENSPGPHDSYYLFKEFVKMAQ 370
>sp|B2URJ0|CARA_AKKM8 Carbamoyl-phosphate synthase small chain OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=carA PE=3 SV=1
Length = 372
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 68/94 (72%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGH G NHPV +++ G++ I++QNH +AVDP T+P VE+T INLND T G+A+ L
Sbjct: 276 KFGHRGANHPVKDLKTGKISITSQNHGFAVDPDTVPDDVEITLINLNDNTVEGIAHRTLP 335
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
V S+QYH EA+PGP D +FRDF +++ + K +
Sbjct: 336 VFSVQYHPEAAPGPRDPQYLFRDFRKMIAASKRQ 369
>sp|O28995|CARA_ARCFU Carbamoyl-phosphate synthase small chain OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=carA PE=3 SV=1
Length = 358
Score = 105 bits (262), Expect = 8e-23, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 63/92 (68%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG N PV + + GRV IS+QNHN+AVD TLPK EVT INLND T G+ +
Sbjct: 267 KFGHHGSNQPVKDFETGRVFISSQNHNFAVDTKTLPKEFEVTQINLNDHTVEGMVHKDFP 326
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
++++QYH EA PGP D+ F +V++++ +
Sbjct: 327 LITVQYHPEAGPGPHDTYFFFDRYVDMLREYR 358
>sp|P63730|CARA_STAAW Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
(strain MW2) GN=carA PE=3 SV=1
Length = 366
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKG-VEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV N++ G+V+I++QNH YA+D +L +EVTH+ LNDGT GL + L
Sbjct: 266 KFGHRGANHPVKNLETGKVDITSQNHGYAIDIDSLKSTDLEVTHLALNDGTVEGLKHKTL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA+PGP DS+ +F DFV +M + K +
Sbjct: 326 PAFSVQYHPEANPGPSDSNYLFDDFVAMMTNFKEK 360
>sp|Q6GA11|CARA_STAAS Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
(strain MSSA476) GN=carA PE=3 SV=1
Length = 366
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKG-VEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV N++ G+V+I++QNH YA+D +L +EVTH+ LNDGT GL + L
Sbjct: 266 KFGHRGANHPVKNLETGKVDITSQNHGYAIDIDSLKSTDLEVTHLALNDGTVEGLKHKTL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA+PGP DS+ +F DFV +M + K +
Sbjct: 326 PAFSVQYHPEANPGPSDSNYLFDDFVAMMTNFKEK 360
>sp|P99147|CARA_STAAN Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
(strain N315) GN=carA PE=1 SV=1
Length = 366
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKG-VEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV N++ G+V+I++QNH YA+D +L +EVTH+ LNDGT GL + L
Sbjct: 266 KFGHRGANHPVKNLETGKVDITSQNHGYAIDIDSLKSTDLEVTHLALNDGTVEGLKHKTL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA+PGP DS+ +F DFV +M + K +
Sbjct: 326 PAFSVQYHPEANPGPSDSNYLFDDFVAMMTNFKEK 360
>sp|P63729|CARA_STAAM Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=carA PE=3 SV=1
Length = 366
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKG-VEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV N++ G+V+I++QNH YA+D +L +EVTH+ LNDGT GL + L
Sbjct: 266 KFGHRGANHPVKNLETGKVDITSQNHGYAIDIDSLKSTDLEVTHLALNDGTVEGLKHKTL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA+PGP DS+ +F DFV +M + K +
Sbjct: 326 PAFSVQYHPEANPGPSDSNYLFDDFVAMMTNFKEK 360
>sp|Q5HGN0|CARA_STAAC Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
(strain COL) GN=carA PE=3 SV=1
Length = 366
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKG-VEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV N++ G+V+I++QNH YA+D +L +EVTH+ LNDGT GL + L
Sbjct: 266 KFGHRGANHPVKNLETGKVDITSQNHGYAIDIDSLKSTDLEVTHLALNDGTVEGLKHKTL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA+PGP DS+ +F DFV +M + K +
Sbjct: 326 PAFSVQYHPEANPGPSDSNYLFDDFVAMMTNFKEK 360
>sp|Q6GHN3|CARA_STAAR Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
(strain MRSA252) GN=carA PE=3 SV=1
Length = 366
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKG-VEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV N++ G+V+I++QNH YA+D +L +EVTH+ LNDGT GL + L
Sbjct: 266 KFGHRGANHPVKNLETGKVDITSQNHGYAIDIDSLKSTDLEVTHLALNDGTVEGLKHKTL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA+PGP DS+ +F DFV +M + K +
Sbjct: 326 PAFSVQYHPEANPGPSDSNYLFDDFVAMMTNFKEK 360
>sp|Q1IWN0|CARA_DEIGD Carbamoyl-phosphate synthase small chain OS=Deinococcus
geothermalis (strain DSM 11300) GN=carA PE=3 SV=1
Length = 394
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEV-THINLNDGTCAGLAYPAL 59
KFGH GGN PV N+ G VEI++QNH YAVD A++P G V TH+NLNDGT G+A+
Sbjct: 285 KFGHRGGNQPVKNLLTGNVEITSQNHGYAVDIASIPDGAFVATHVNLNDGTLEGMAHSRY 344
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVE 86
V S+QYH EASPGP DS +F F+E
Sbjct: 345 PVFSVQYHPEASPGPHDSRYLFDRFIE 371
>sp|Q4L5Q4|CARA_STAHJ Carbamoyl-phosphate synthase small chain OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=carA PE=3 SV=1
Length = 366
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLP-KGVEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV ++++G+V+I++QNH YA+D +L +EVTHI LNDGT GL + L
Sbjct: 266 KFGHRGANHPVKDLRSGKVDITSQNHGYAIDKNSLVNTDLEVTHIALNDGTVEGLRHKTL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA PGP DS+ +F +F+ +MK K +
Sbjct: 326 PAFSVQYHPEARPGPSDSNYLFDEFMTMMKEFKEK 360
>sp|A4SXM1|CARA_POLSQ Carbamoyl-phosphate synthase small chain OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=carA PE=3 SV=1
Length = 397
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 62/92 (67%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV ++ GRV I++QNH +AVD +TLP V VTH++L DG+ GLA+
Sbjct: 302 KFGHHGANHPVKDLDTGRVAITSQNHGFAVDASTLPANVRVTHVSLFDGSLQGLAWKDKP 361
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
+ Q H EASPGP D +F F+ELM + K
Sbjct: 362 AICFQGHPEASPGPHDVSYLFDRFMELMNAAK 393
>sp|Q5HPY9|CARA_STAEQ Carbamoyl-phosphate synthase small chain OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=carA PE=3
SV=1
Length = 366
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPK-GVEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV +++ G+++I++QNH Y++D +L +EVTHI LNDGT GL + L
Sbjct: 266 KFGHRGANHPVKDLRTGKIDITSQNHGYSIDRDSLKNTDLEVTHIALNDGTVEGLRHKEL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA PGP DS+ +F +F+ +MK K +
Sbjct: 326 PAFSVQYHPEARPGPSDSNYLFDEFITMMKDFKEK 360
>sp|Q9RWI4|CARA_DEIRA Carbamoyl-phosphate synthase small chain OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=carA PE=3
SV=1
Length = 394
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEV-THINLNDGTCAGLAYPAL 59
KFGH GGN PV N+ G VEI++QNH YAVD ++P G V TH+NLNDGT G+A+
Sbjct: 285 KFGHRGGNQPVKNLLTGNVEITSQNHGYAVDLDSIPNGAFVATHVNLNDGTLEGMAHSRY 344
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVE 86
V S+QYH EASPGP DS +F F+E
Sbjct: 345 PVFSVQYHPEASPGPHDSRYLFDRFIE 371
>sp|Q8UDF7|CARA_AGRT5 Carbamoyl-phosphate synthase small chain OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=carA PE=3 SV=2
Length = 401
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 61/93 (65%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+GVE TH +L DGT GL V
Sbjct: 304 GHHGANHPVKDFTTGKVEIVSMNHGFAVDTKSLPEGVEETHTSLFDGTNCGLRIVGKPVF 363
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR FV L++ K A
Sbjct: 364 SVQHHPEASPGPQDSHYLFRRFVNLLRENKGEA 396
>sp|Q8CPJ5|CARA_STAES Carbamoyl-phosphate synthase small chain OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=carA PE=3 SV=1
Length = 366
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLP-KGVEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV +++ G+++I++QNH Y++D +L +EVTHI LNDGT GL + L
Sbjct: 266 KFGHRGANHPVKDLRTGKIDITSQNHGYSIDCDSLKNTDLEVTHIALNDGTVEGLRHKEL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA PGP DS+ +F +F+ +MK K +
Sbjct: 326 PAFSVQYHPEARPGPSDSNYLFDEFIAMMKDFKEK 360
>sp|Q8YXQ7|CARA_NOSS1 Carbamoyl-phosphate synthase small chain OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=carA PE=3 SV=1
Length = 388
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 3/93 (3%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGV-EVTHINLNDGTCAGLAYPAL 59
KFGH G N P Q RVEI++QNH++A+DP +LP+ V E++H+NLND T AGL + +L
Sbjct: 290 KFGHRGLNQPAGLTQ--RVEITSQNHSFAIDPDSLPEAVVEISHLNLNDRTVAGLRHKSL 347
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
+ S+QYH EASPGP D+D +F FV M++ K
Sbjct: 348 PIFSVQYHPEASPGPHDADYLFAQFVHQMRTTK 380
>sp|Q5SLL3|CARA_THET8 Carbamoyl-phosphate synthase small chain OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=carA PE=3 SV=1
Length = 391
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGH G NHPV N+Q G++EI++QNH YAVD +L K TH+NLNDGT G+A+
Sbjct: 284 KFGHRGANHPVKNLQTGKIEITSQNHGYAVDIDSL-KDFRPTHVNLNDGTLEGMAHARYP 342
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKS 90
V S+QYH EA+PGP D+ +FR F+E +++
Sbjct: 343 VFSVQYHPEAAPGPHDALYLFRRFLEEVEA 372
>sp|Q72GZ0|CARA_THET2 Carbamoyl-phosphate synthase small chain OS=Thermus thermophilus
(strain HB27 / ATCC BAA-163 / DSM 7039) GN=carA PE=3
SV=1
Length = 391
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGH G NHPV N+Q G++EI++QNH YAVD +L K TH+NLNDGT G+A+
Sbjct: 284 KFGHRGANHPVKNLQTGKIEITSQNHGYAVDIDSL-KDFRPTHVNLNDGTLEGMAHARYP 342
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKS 90
V S+QYH EA+PGP D+ +FR F+E +++
Sbjct: 343 VFSVQYHPEAAPGPHDALYLFRRFLEEVEA 372
>sp|Q89DR8|CARA_BRAJA Carbamoyl-phosphate synthase small chain OS=Bradyrhizobium
japonicum (strain USDA 110) GN=carA PE=3 SV=1
Length = 396
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/90 (53%), Positives = 60/90 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI++ NH +AVD TLPKG THI+L DG+ G+ V
Sbjct: 305 GHHGANHPVKDETTGKVEITSMNHGFAVDEKTLPKGATQTHISLFDGSNCGIQLDGKPVF 364
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
S+QYH EASPGP DS +F+ F ELM+ K
Sbjct: 365 SVQYHPEASPGPRDSHYLFQRFAELMRQKK 394
>sp|Q8KGA2|CARA_CHLTE Carbamoyl-phosphate synthase small chain OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=carA PE=3 SV=1
Length = 366
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 65/92 (70%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV N+ + +EI++QNH +AV+ +LP +E+TH NL D T G+ + L
Sbjct: 274 KFGHHGANHPVKNLLSNTIEITSQNHGFAVEMESLPGELELTHKNLYDMTVEGIRHRELP 333
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
S+QYH EA+PGP DS +F++F ELM+ +K
Sbjct: 334 CFSVQYHPEAAPGPHDSHYLFKEFTELMERLK 365
>sp|P57245|CARA_BUCAI Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=carA PE=3
SV=1
Length = 387
Score = 100 bits (249), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 63/92 (68%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHGGNHPV +I+N RV I++QNH++ VD LP +E+TH +L DGT GL+ +
Sbjct: 291 KFGHHGGNHPVKDIKNNRVIITSQNHSFTVDTENLPNNIEITHSSLFDGTLQGLSLTNKS 350
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
S Q H EASPGP D+ +F F++L+ S K
Sbjct: 351 AFSFQGHPEASPGPHDASYLFDYFIKLIVSQK 382
>sp|Q0BY73|CARA_HYPNA Carbamoyl-phosphate synthase small chain OS=Hyphomonas neptunium
(strain ATCC 15444) GN=carA PE=3 SV=1
Length = 386
Score = 99.8 bits (247), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV ++ G+VEI + NH + VDP TLP GVE +H +L DGT +GLA ++
Sbjct: 295 GHHGANHPVKDLATGKVEIVSMNHGFTVDPDTLPPGVEESHRSLFDGTNSGLAVKGKPII 354
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +F F LM+ YRA
Sbjct: 355 SVQHHPEASPGPQDSFYLFTRFAGLMRD--YRA 385
>sp|B1XUM3|CARA_POLNS Carbamoyl-phosphate synthase small chain OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=carA
PE=3 SV=1
Length = 398
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 61/94 (64%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV ++ GRV I++QNH +AVD TLP + VTH++L DG+ GLA+
Sbjct: 302 KFGHHGANHPVKDLDTGRVAITSQNHGFAVDANTLPDNIRVTHVSLFDGSLQGLAWKDKP 361
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
+ Q H EASPGP D +F FVELM + +
Sbjct: 362 ELCFQGHPEASPGPHDIAYLFDRFVELMNAASKK 395
>sp|Q8XHB2|CARA_CLOPE Carbamoyl-phosphate synthase small chain OS=Clostridium perfringens
(strain 13 / Type A) GN=carA PE=3 SV=1
Length = 349
Score = 99.0 bits (245), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/86 (50%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGH G NHPV ++ N RV I++QNH Y V ATLP+ +E+TH+++NDGT G+ + L
Sbjct: 263 KFGHRGCNHPVKDLINNRVHITSQNHGYYV--ATLPENMEITHVSMNDGTVEGMKHKELP 320
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVE 86
+ S+Q+H EA PGP DS+ +F +F++
Sbjct: 321 IFSVQFHPEACPGPKDSEYIFDEFMK 346
>sp|B4S5S1|CARA_PROA2 Carbamoyl-phosphate synthase small chain OS=Prosthecochloris
aestuarii (strain DSM 271 / SK 413) GN=carA PE=3 SV=1
Length = 371
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 62/92 (67%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV N+++ +EI++QNH +AV +LP+ +E+TH+NL D T G+ + L
Sbjct: 277 KFGHHGSNHPVKNLKSSSIEITSQNHGFAVAMESLPESLEMTHLNLYDQTVEGVRHKKLP 336
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
S+QYH EA+PGP DS +F F +M K
Sbjct: 337 CFSVQYHPEAAPGPHDSHYLFEQFTAMMDQAK 368
>sp|P59576|CARA_BUCBP Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=carA PE=3 SV=1
Length = 397
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/89 (51%), Positives = 59/89 (66%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV +++ V I++QNHNY VD LPK + +THI+L DG+ GL +
Sbjct: 298 KFGHHGSNHPVKELKSNTVMITSQNHNYTVDTNNLPKNINITHISLFDGSIQGLQRNDKH 357
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMK 89
S Q H EASPGP DS +F F++LMK
Sbjct: 358 AFSFQGHPEASPGPHDSMILFDKFIKLMK 386
>sp|Q49WY3|CARA_STAS1 Carbamoyl-phosphate synthase small chain OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=carA PE=3 SV=1
Length = 366
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLP-KGVEVTHINLNDGTCAGLAYPAL 59
KFGH G NHPV +++ G++ +++QNH YA+D A+L +EVTHI +ND T GL + +L
Sbjct: 266 KFGHRGANHPVKDLKTGKIALTSQNHGYAIDKASLKNTDLEVTHIAINDDTVEGLRHKSL 325
Query: 60 NVMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S+QYH EA PGP DS+ +F +F++++ K +
Sbjct: 326 PAFSVQYHPEACPGPSDSNYLFDEFIDMINEYKTK 360
>sp|A6WZJ5|CARA_OCHA4 Carbamoyl-phosphate synthase small chain OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=carA PE=3
SV=1
Length = 407
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 60/90 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
S+Q+H EASPGP DS +FR F+ L++ K
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIREKK 395
>sp|Q8KZA0|CARA_DESVM Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris
(strain Miyazaki F / DSM 19637) GN=carA PE=3 SV=1
Length = 376
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV ++ G +EIS+QNH + VD ++P VE+TH+NLNDGT G A+
Sbjct: 284 KFGHHGCNHPVKDLVTGHIEISSQNHGFCVDIESVPD-VEITHVNLNDGTLEGFAHKTRP 342
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMK 89
++++Q+H EASPGP DS F F +++
Sbjct: 343 ILAVQHHPEASPGPTDSRYFFARFRGMVR 371
>sp|Q92N95|CARA_RHIME Carbamoyl-phosphate synthase small chain OS=Rhizobium meliloti
(strain 1021) GN=carA PE=3 SV=1
Length = 401
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 61/90 (67%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+GVE THI+L DGT GL V
Sbjct: 304 GHHGANHPVKDHTTGKVEIVSMNHGFAVDANSLPQGVEQTHISLFDGTNCGLRVDGRPVF 363
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
S+Q+H EASPGP DS +FR F+ L++ K
Sbjct: 364 SVQHHPEASPGPQDSHYLFRRFLNLIREKK 393
>sp|C4XRH8|CARA_DESMR Carbamoyl-phosphate synthase small chain OS=Desulfovibrio
magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
GN=carA PE=3 SV=1
Length = 375
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV ++Q GR+EIS+QNH + VD +L VE+TH+NLND T G A+
Sbjct: 283 KFGHHGLNHPVKDLQTGRIEISSQNHGFCVDIESLSD-VELTHVNLNDNTLEGFAHKKKP 341
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMK 89
V+++QYH EA+PGP DS F F L++
Sbjct: 342 VIAIQYHPEAAPGPHDSRYFFSRFRNLVR 370
>sp|A1VA26|CARA_DESVV Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris
subsp. vulgaris (strain DP4) GN=carA PE=3 SV=1
Length = 375
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV ++ GR+EIS+QNH + VD +L VE+TH+NLNDGT G A+
Sbjct: 283 KFGHHGCNHPVKDLTTGRIEISSQNHGFCVDIDSLTD-VEITHVNLNDGTLEGFAHKTKP 341
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMK 89
V+++Q+H EASPGP+DS F F +++
Sbjct: 342 VIAVQHHPEASPGPNDSRYFFARFRNMVR 370
>sp|Q726J4|CARA_DESVH Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=carA
PE=3 SV=1
Length = 375
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV ++ GR+EIS+QNH + VD +L VE+TH+NLNDGT G A+
Sbjct: 283 KFGHHGCNHPVKDLTTGRIEISSQNHGFCVDIDSLTD-VEITHVNLNDGTLEGFAHKTKP 341
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMK 89
V+++Q+H EASPGP+DS F F +++
Sbjct: 342 VIAVQHHPEASPGPNDSRYFFARFRNMVR 370
>sp|Q98IA7|CARA_RHILO Carbamoyl-phosphate synthase small chain OS=Rhizobium loti (strain
MAFF303099) GN=carA PE=3 SV=1
Length = 398
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 62/90 (68%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+GVE TH++L DG+ G+A V
Sbjct: 300 GHHGANHPVKDHTTGKVEIVSMNHGFAVDADSLPEGVEETHVSLFDGSNCGIALTGRPVF 359
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVK 92
S+Q+H EASPGP DS +FR FV L++ +
Sbjct: 360 SVQHHPEASPGPQDSHYLFRRFVNLIREKR 389
>sp|Q8K9Z6|CARA_BUCAP Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=carA PE=3 SV=1
Length = 385
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 59/93 (63%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHGGNHPV I+ RV I++QNH++ VD +P + +TH +L DGT GL
Sbjct: 291 KFGHHGGNHPVKEIKTNRVIITSQNHSFTVDAKNMPNNIAITHSSLFDGTLQGLCLTDKL 350
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKY 93
S Q H EASPGP D+ +F F++L+ VK+
Sbjct: 351 AFSFQGHPEASPGPHDASSLFDHFIKLLNQVKF 383
>sp|Q31LB7|CARA_SYNE7 Carbamoyl-phosphate synthase small chain OS=Synechococcus elongatus
(strain PCC 7942) GN=carA PE=3 SV=1
Length = 391
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 50/89 (56%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGH G NHP Q +VEI++QNH +A+ +L VEVTH+NLND T AGL + L
Sbjct: 297 KFGHRGLNHPCGLSQ--QVEITSQNHGFAIAADSLGPDVEVTHLNLNDRTVAGLRHRHLP 354
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMK 89
V S+QYH EASPGP DSD +F FV LM+
Sbjct: 355 VFSVQYHPEASPGPHDSDYLFEQFVALMR 383
>sp|B0CHS0|CARA_BRUSI Carbamoyl-phosphate synthase small chain OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=carA PE=3 SV=1
Length = 407
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR F+ L++ K +A
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIRERKGQA 398
>sp|B8GNX4|CARA_THISH Carbamoyl-phosphate synthase small chain OS=Thioalkalivibrio sp.
(strain HL-EbGR7) GN=carA PE=3 SV=1
Length = 379
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 59/94 (62%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGHHG NHPV ++ + RV IS+QNH +AVD TLP V+ TH +L DGT G+A
Sbjct: 285 KFGHHGANHPVQDLDSKRVMISSQNHGFAVDENTLPGNVKATHRSLFDGTLQGIARTDRP 344
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKSVKYR 94
S Q H EASPGP D +F F+ELMK R
Sbjct: 345 AFSFQGHPEASPGPHDVAPLFDRFIELMKPQGVR 378
>sp|Q8FZJ8|CARA_BRUSU Carbamoyl-phosphate synthase small chain OS=Brucella suis biovar 1
(strain 1330) GN=carA PE=3 SV=1
Length = 407
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR F+ L++ K +A
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIRERKGQA 398
>sp|A9M6F1|CARA_BRUC2 Carbamoyl-phosphate synthase small chain OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=carA PE=3 SV=1
Length = 407
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR F+ L++ K +A
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIRERKGQA 398
>sp|A5VRM1|CARA_BRUO2 Carbamoyl-phosphate synthase small chain OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=carA PE=3 SV=1
Length = 407
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR F+ L++ K +A
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIRERKGQA 398
>sp|Q8YIB8|CARA_BRUME Carbamoyl-phosphate synthase small chain OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=carA
PE=3 SV=2
Length = 407
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR F+ L++ K +A
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIRERKGQA 398
>sp|C0REC2|CARA_BRUMB Carbamoyl-phosphate synthase small chain OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=carA PE=3 SV=1
Length = 407
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR F+ L++ K +A
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIRERKGQA 398
>sp|Q57C28|CARA_BRUAB Carbamoyl-phosphate synthase small chain OS=Brucella abortus biovar
1 (strain 9-941) GN=carA PE=3 SV=1
Length = 407
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR F+ L++ K +A
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIRERKGQA 398
>sp|Q2YM22|CARA_BRUA2 Carbamoyl-phosphate synthase small chain OS=Brucella abortus
(strain 2308) GN=carA PE=3 SV=1
Length = 407
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR F+ L++ K +A
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIRERKGQA 398
>sp|B2S6U9|CARA_BRUA1 Carbamoyl-phosphate synthase small chain OS=Brucella abortus
(strain S19) GN=carA PE=3 SV=1
Length = 407
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV + G+VEI + NH +AVD +LP+ VE TH++L DGT GL V
Sbjct: 306 GHHGANHPVKDYTTGKVEIVSMNHGFAVDSDSLPENVEETHVSLFDGTNCGLRVVGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVKYRA 95
S+Q+H EASPGP DS +FR F+ L++ K +A
Sbjct: 366 SVQHHPEASPGPQDSHYLFRRFINLIRERKGQA 398
>sp|Q5N0L0|CARA_SYNP6 Carbamoyl-phosphate synthase small chain OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=carA
PE=3 SV=1
Length = 391
Score = 95.9 bits (237), Expect = 7e-20, Method: Composition-based stats.
Identities = 50/89 (56%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN 60
KFGH G NHP Q +VEI+ QNH +A+ +L VEVTH+NLND T AGL + L
Sbjct: 297 KFGHRGLNHPCGLSQ--QVEITGQNHGFAIAADSLGPDVEVTHLNLNDRTVAGLRHRHLP 354
Query: 61 VMSLQYHLEASPGPDDSDCVFRDFVELMK 89
V S+QYH EASPGP DSD +F FV LM+
Sbjct: 355 VFSVQYHPEASPGPHDSDYLFEQFVALMR 383
>sp|P58895|CARA_XANAC Carbamoyl-phosphate synthase small chain OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=carA PE=3 SV=1
Length = 391
Score = 95.9 bits (237), Expect = 7e-20, Method: Composition-based stats.
Identities = 46/88 (52%), Positives = 57/88 (64%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV ++ GRV I++QNH +AVD +TLP V VTH +L DGT G+A
Sbjct: 302 GHHGANHPVQDLDGGRVMITSQNHGFAVDESTLPANVRVTHRSLFDGTNQGIALTDAPAF 361
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELMKS 90
S Q H EASPGP D +F FV+LM +
Sbjct: 362 SFQGHPEASPGPRDVGPLFDRFVDLMAA 389
>sp|A9IWF8|CARA_BART1 Carbamoyl-phosphate synthase small chain OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=carA PE=3 SV=1
Length = 398
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 61/86 (70%)
Query: 3 GHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVM 62
GHHG NHPV ++ +G+VEI + NH +AVD ATLPK V+ THI+L DG+ G+ V
Sbjct: 306 GHHGANHPVKDLNSGKVEIVSMNHGFAVDAATLPKHVQETHISLFDGSNCGIRIIGKPVF 365
Query: 63 SLQYHLEASPGPDDSDCVFRDFVELM 88
S+QYH EASPGP DS +F+ F +L+
Sbjct: 366 SVQYHPEASPGPQDSHYLFQHFCDLI 391
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,890,173
Number of Sequences: 539616
Number of extensions: 1448167
Number of successful extensions: 3433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3116
Number of HSP's gapped (non-prelim): 219
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)