Query 047544
Match_columns 95
No_of_seqs 103 out of 1084
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 12:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0505 CarA Carbamoylphosphat 100.0 1.5E-32 3.2E-37 206.6 9.0 93 1-93 275-367 (368)
2 TIGR01368 CPSaseIIsmall carbam 99.9 1.4E-27 3E-32 181.0 11.4 89 1-89 268-357 (358)
3 PRK12564 carbamoyl phosphate s 99.9 6.2E-26 1.3E-30 172.2 10.8 88 1-88 273-360 (360)
4 PRK12838 carbamoyl phosphate s 99.9 1.1E-25 2.5E-30 170.4 11.5 91 1-91 262-353 (354)
5 PLN02771 carbamoyl-phosphate s 99.9 5.8E-25 1.3E-29 169.1 7.7 81 1-81 335-415 (415)
6 CHL00197 carA carbamoyl-phosph 99.9 1.9E-23 4.2E-28 159.6 10.6 90 1-92 288-378 (382)
7 cd01744 GATase1_CPSase Small c 99.9 1.7E-21 3.7E-26 134.6 9.5 84 2-85 95-178 (178)
8 KOG0370 Multifunctional pyrimi 99.9 6.5E-22 1.4E-26 162.4 8.2 92 1-92 265-356 (1435)
9 COG0512 PabA Anthranilate/para 99.8 1.3E-19 2.7E-24 127.4 8.9 76 10-87 115-190 (191)
10 PRK08007 para-aminobenzoate sy 99.8 4.2E-19 9.2E-24 123.8 9.6 83 2-86 98-186 (187)
11 cd01746 GATase1_CTP_Synthase T 99.8 2.3E-19 5E-24 129.5 7.1 67 19-85 164-235 (235)
12 TIGR00337 PyrG CTP synthase. C 99.8 4.2E-19 9.1E-24 139.9 8.7 87 1-87 397-525 (525)
13 PLN02327 CTP synthase 99.7 1E-18 2.2E-23 138.3 5.1 91 1-91 448-549 (557)
14 COG2071 Predicted glutamine am 99.7 5.5E-18 1.2E-22 122.6 6.1 69 19-91 171-241 (243)
15 PRK05670 anthranilate synthase 99.7 2.5E-17 5.5E-22 114.6 9.1 83 3-88 99-188 (189)
16 PLN02335 anthranilate synthase 99.7 2.8E-17 6E-22 117.6 9.5 87 4-92 120-217 (222)
17 PRK06186 hypothetical protein; 99.7 1.8E-17 3.8E-22 119.6 7.0 72 18-90 152-228 (229)
18 TIGR00566 trpG_papA glutamine 99.7 8.2E-17 1.8E-21 112.3 9.5 66 20-86 122-187 (188)
19 PRK11366 puuD gamma-glutamyl-g 99.7 4.7E-17 1E-21 118.4 6.8 70 18-91 176-247 (254)
20 PRK07649 para-aminobenzoate/an 99.7 6.1E-16 1.3E-20 108.7 9.4 85 3-90 99-190 (195)
21 CHL00101 trpG anthranilate syn 99.7 5.7E-16 1.2E-20 108.1 8.6 65 21-87 123-188 (190)
22 PRK08857 para-aminobenzoate sy 99.6 1.3E-15 2.7E-20 106.5 9.8 65 22-87 124-192 (193)
23 PRK14607 bifunctional glutamin 99.6 1.4E-15 2.9E-20 120.4 9.5 85 3-90 100-191 (534)
24 PRK05380 pyrG CTP synthetase; 99.6 4.9E-16 1.1E-20 122.8 6.8 72 22-93 455-531 (533)
25 PRK06774 para-aminobenzoate sy 99.6 3.4E-15 7.3E-20 104.0 9.0 67 18-86 121-190 (191)
26 PRK07765 para-aminobenzoate sy 99.6 5.2E-15 1.1E-19 105.3 9.6 85 3-89 103-193 (214)
27 PLN02889 oxo-acid-lyase/anthra 99.6 5.8E-15 1.3E-19 122.5 8.5 70 21-91 217-338 (918)
28 PRK06895 putative anthranilate 99.6 1.3E-14 2.9E-19 101.0 8.6 68 17-87 121-188 (190)
29 PRK00758 GMP synthase subunit 99.6 1.5E-14 3.3E-19 100.0 7.2 68 18-90 116-183 (184)
30 PRK05637 anthranilate synthase 99.5 3.9E-14 8.5E-19 100.6 9.4 68 18-89 137-206 (208)
31 PRK13566 anthranilate synthase 99.5 2.5E-14 5.4E-19 116.6 9.4 87 2-89 624-719 (720)
32 cd01743 GATase1_Anthranilate_S 99.5 5.1E-14 1.1E-18 97.3 8.9 79 3-85 98-184 (184)
33 TIGR01815 TrpE-clade3 anthrani 99.5 3.5E-14 7.6E-19 115.7 9.3 88 2-90 614-710 (717)
34 cd01745 GATase1_2 Subgroup of 99.5 1.3E-14 2.7E-19 101.3 4.7 61 22-85 127-189 (189)
35 PF07722 Peptidase_C26: Peptid 99.5 1.7E-14 3.7E-19 102.8 5.1 49 17-69 167-217 (217)
36 KOG0026 Anthranilate synthase, 99.5 3.4E-14 7.3E-19 98.9 5.8 67 22-90 148-216 (223)
37 TIGR00888 guaA_Nterm GMP synth 99.5 8.3E-14 1.8E-18 96.6 7.8 66 17-87 118-183 (188)
38 TIGR01823 PabB-fungal aminodeo 99.5 1.6E-13 3.6E-18 112.2 9.9 88 3-92 113-208 (742)
39 COG0504 PyrG CTP synthase (UTP 99.5 2.4E-14 5.3E-19 112.0 4.4 77 18-94 451-532 (533)
40 PRK09522 bifunctional glutamin 99.5 1.4E-13 3.1E-18 109.1 8.5 69 16-90 124-192 (531)
41 cd01742 GATase1_GMP_Synthase T 99.5 1.8E-13 4E-18 93.8 6.7 65 16-85 117-181 (181)
42 PF00117 GATase: Glutamine ami 99.4 2.3E-13 4.9E-18 93.9 6.0 84 2-86 99-190 (192)
43 PLN02347 GMP synthetase 99.4 1.9E-12 4E-17 102.9 9.3 64 23-90 141-204 (536)
44 PRK00074 guaA GMP synthase; Re 99.4 3E-12 6.5E-17 101.1 8.7 68 16-88 122-189 (511)
45 PRK13141 hisH imidazole glycer 99.2 8.4E-11 1.8E-15 82.6 7.9 60 24-89 144-203 (205)
46 CHL00188 hisH imidazole glycer 99.1 2.2E-10 4.7E-15 81.6 7.8 73 9-87 137-209 (210)
47 cd01747 GATase1_Glutamyl_Hydro 99.1 7.9E-11 1.7E-15 86.7 5.8 73 21-93 156-251 (273)
48 cd01741 GATase1_1 Subgroup of 99.1 1.1E-10 2.3E-15 80.6 4.4 55 18-85 134-188 (188)
49 PRK13525 glutamine amidotransf 99.1 6.4E-10 1.4E-14 77.7 8.1 62 18-90 128-189 (189)
50 cd01748 GATase1_IGP_Synthase T 99.1 4.7E-10 1E-14 78.3 6.5 57 23-85 142-198 (198)
51 PRK13143 hisH imidazole glycer 99.0 8.8E-10 1.9E-14 77.4 7.1 60 23-89 139-199 (200)
52 PRK13146 hisH imidazole glycer 99.0 1.1E-09 2.3E-14 77.7 7.5 71 10-87 137-207 (209)
53 PRK14004 hisH imidazole glycer 99.0 1.2E-09 2.6E-14 77.8 7.6 61 22-87 149-209 (210)
54 PRK13181 hisH imidazole glycer 99.0 2.3E-09 4.9E-14 75.1 7.0 58 23-86 141-198 (199)
55 PRK13527 glutamine amidotransf 99.0 2.1E-09 4.5E-14 75.4 6.9 57 23-89 142-198 (200)
56 PRK09065 glutamine amidotransf 99.0 1.9E-09 4.1E-14 77.8 6.3 51 16-71 139-189 (237)
57 TIGR01855 IMP_synth_hisH imida 98.9 3.2E-09 6.9E-14 74.4 6.8 58 22-86 138-195 (196)
58 PRK13152 hisH imidazole glycer 98.9 5.7E-09 1.2E-13 73.3 6.7 55 23-86 144-200 (201)
59 PRK07567 glutamine amidotransf 98.8 6.7E-09 1.4E-13 75.2 5.5 58 9-71 136-193 (242)
60 PRK13170 hisH imidazole glycer 98.8 1.4E-08 2.9E-13 71.3 6.9 57 22-86 139-195 (196)
61 TIGR03800 PLP_synth_Pdx2 pyrid 98.8 8.5E-09 1.8E-13 72.0 5.4 51 26-86 134-184 (184)
62 KOG1224 Para-aminobenzoate (PA 98.8 7.5E-09 1.6E-13 82.6 4.8 65 22-89 151-218 (767)
63 PLN02617 imidazole glycerol ph 98.8 4.2E-08 9E-13 78.3 9.0 61 24-90 150-212 (538)
64 COG0518 GuaA GMP synthase - Gl 98.8 4.7E-09 1E-13 74.4 3.0 60 22-87 133-192 (198)
65 KOG2387 CTP synthase (UTP-ammo 98.7 7.5E-09 1.6E-13 81.0 2.7 68 22-89 476-548 (585)
66 TIGR01737 FGAM_synth_I phospho 98.6 1.3E-08 2.7E-13 73.0 2.1 69 19-87 137-226 (227)
67 PRK03619 phosphoribosylformylg 98.6 3.9E-08 8.5E-13 70.2 4.6 67 19-86 138-218 (219)
68 PRK06490 glutamine amidotransf 98.6 9.1E-08 2E-12 69.2 6.4 43 24-71 140-182 (239)
69 cd01749 GATase1_PB Glutamine A 98.5 1.9E-07 4.1E-12 64.8 5.1 52 24-85 132-183 (183)
70 PRK08250 glutamine amidotransf 98.5 4.9E-07 1.1E-11 65.2 6.9 57 9-71 127-183 (235)
71 COG0118 HisH Glutamine amidotr 98.5 8.6E-07 1.9E-11 63.1 7.7 71 9-88 131-203 (204)
72 PRK05665 amidotransferase; Pro 98.4 9.4E-07 2E-11 64.1 6.4 51 17-72 140-190 (240)
73 PRK07053 glutamine amidotransf 98.3 1.7E-06 3.6E-11 62.5 5.5 45 22-71 137-181 (234)
74 KOG1622 GMP synthase [Nucleoti 98.3 7.2E-07 1.6E-11 70.1 3.7 61 24-88 144-205 (552)
75 PRK13142 hisH imidazole glycer 97.9 3.7E-05 8E-10 54.3 6.7 55 24-87 132-187 (192)
76 KOG1559 Gamma-glutamyl hydrola 97.9 9.5E-06 2.1E-10 59.9 2.7 51 22-72 213-272 (340)
77 PRK05368 homoserine O-succinyl 97.5 0.00038 8.3E-09 52.3 6.8 74 8-88 176-251 (302)
78 PLN02832 glutamine amidotransf 97.3 0.0015 3.3E-08 47.9 7.5 36 49-90 181-216 (248)
79 PRK01175 phosphoribosylformylg 94.5 0.043 9.3E-07 40.4 3.3 40 50-89 207-258 (261)
80 PF01174 SNO: SNO glutamine am 91.5 0.58 1.3E-05 33.2 5.1 46 37-89 142-187 (188)
81 COG0311 PDX2 Predicted glutami 91.3 0.92 2E-05 32.3 5.9 48 35-90 145-192 (194)
82 KOG3179 Predicted glutamine sy 90.9 0.51 1.1E-05 34.3 4.4 44 24-71 152-195 (245)
83 KOG0623 Glutamine amidotransfe 88.8 0.44 9.5E-06 37.3 2.9 63 16-86 139-206 (541)
84 cd01740 GATase1_FGAR_AT Type 1 88.8 0.37 7.9E-06 34.7 2.4 35 50-84 194-237 (238)
85 PF04204 HTS: Homoserine O-suc 88.3 2 4.4E-05 32.4 6.2 75 8-89 175-251 (298)
86 COG0047 PurL Phosphoribosylfor 88.0 0.86 1.9E-05 33.3 3.9 39 50-88 188-230 (231)
87 PF13507 GATase_5: CobB/CobQ-l 86.8 1.7 3.6E-05 32.1 4.9 40 49-88 207-259 (259)
88 PRK13526 glutamine amidotransf 82.1 4.8 0.0001 28.2 5.3 44 35-86 135-178 (179)
89 KOG1273 WD40 repeat protein [G 70.2 6.4 0.00014 30.6 3.5 33 38-70 86-118 (405)
90 COG0048 RpsL Ribosomal protein 65.6 6.4 0.00014 26.3 2.4 35 35-71 63-106 (129)
91 TIGR01001 metA homoserine O-su 60.1 30 0.00066 26.3 5.4 63 8-72 175-239 (300)
92 PF14124 DUF4291: Domain of un 49.3 8.5 0.00019 27.2 0.9 12 62-73 109-120 (181)
93 PRK05297 phosphoribosylformylg 48.7 19 0.00042 32.3 3.1 39 50-88 1238-1289(1290)
94 TIGR01735 FGAM_synt phosphorib 42.7 19 0.00042 32.4 2.2 37 51-87 1260-1309(1310)
95 PLN03206 phosphoribosylformylg 41.6 31 0.00067 31.2 3.3 38 51-88 1252-1306(1307)
96 TIGR01857 FGAM-synthase phosph 40.6 41 0.00089 30.3 3.9 37 50-86 1194-1237(1239)
97 KOG3210 Imidazoleglycerol-phos 39.1 1.1E+02 0.0023 21.9 5.1 37 50-87 185-222 (226)
98 TIGR00256 D-tyrosyl-tRNA(Tyr) 35.6 27 0.00058 23.8 1.6 25 65-91 92-116 (145)
99 PF04741 InvH: InvH outer memb 34.2 10 0.00023 25.4 -0.5 27 64-90 99-125 (147)
100 cd00563 Dtyr_deacylase D-Tyros 33.6 29 0.00063 23.6 1.6 25 65-91 92-116 (145)
101 KOG0717 Molecular chaperone (D 32.5 16 0.00034 29.6 0.2 27 60-86 30-57 (508)
102 PRK00153 hypothetical protein; 31.2 1.4E+02 0.0029 18.7 6.4 38 38-77 28-65 (104)
103 KOG1539 WD repeat protein [Gen 30.8 2E+02 0.0044 25.2 6.3 48 11-58 186-233 (910)
104 PTZ00120 D-tyrosyl-tRNA(Tyr) d 30.1 36 0.00078 23.4 1.6 19 73-91 98-116 (154)
105 COG1254 AcyP Acylphosphatases 28.1 87 0.0019 19.5 3.0 18 38-55 31-48 (92)
106 KOG1314 DHHC-type Zn-finger pr 27.5 42 0.00092 26.4 1.7 25 63-92 77-101 (414)
107 PRK05273 D-tyrosyl-tRNA(Tyr) d 27.3 44 0.00095 22.8 1.6 18 74-91 99-116 (147)
108 KOG4227 WD40 repeat protein [G 26.5 2.7E+02 0.0059 22.6 6.0 11 61-71 197-207 (609)
109 PF11344 DUF3146: Protein of u 25.5 1.7E+02 0.0037 18.0 4.2 32 39-70 7-38 (80)
110 KOG1538 Uncharacterized conser 25.4 1.4E+02 0.0031 25.9 4.5 19 57-75 175-193 (1081)
111 COG3171 Uncharacterized protei 24.8 89 0.0019 20.6 2.6 30 61-90 30-59 (119)
112 PRK15341 invasion lipoprotein 24.0 23 0.00051 23.5 -0.2 26 64-89 99-124 (147)
113 KOG0303 Actin-binding protein 23.9 2.6E+02 0.0057 22.5 5.5 11 60-70 133-143 (472)
114 PHA03366 FGAM-synthase; Provis 23.9 52 0.0011 29.8 1.8 15 77-91 1288-1302(1304)
115 TIGR01739 tegu_FGAM_synt herpe 23.3 52 0.0011 29.5 1.7 13 77-89 1189-1201(1202)
116 COG1724 Predicted RNA binding 22.7 1.6E+02 0.0035 17.5 3.2 43 37-82 19-61 (66)
117 PF02575 YbaB_DNA_bd: YbaB/Ebf 22.4 1.9E+02 0.004 17.3 5.7 33 38-71 20-52 (93)
118 TIGR01739 tegu_FGAM_synt herpe 21.4 1.3E+02 0.0027 27.2 3.7 23 50-72 1147-1169(1202)
119 PF00400 WD40: WD domain, G-be 21.0 1.2E+02 0.0025 14.4 3.0 19 52-70 5-23 (39)
120 PF01606 Arteri_env: Arterivir 21.0 18 0.00038 25.8 -1.3 10 62-71 120-129 (214)
121 KOG4328 WD40 protein [Function 20.8 73 0.0016 25.8 1.9 19 53-71 181-199 (498)
122 PF03490 Varsurf_PPLC: Variant 20.1 25 0.00054 19.8 -0.6 8 63-70 3-10 (51)
No 1
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.98 E-value=1.5e-32 Score=206.62 Aligned_cols=93 Identities=53% Similarity=0.916 Sum_probs=88.2
Q ss_pred CCCCCcCCcceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHH
Q 047544 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCV 80 (95)
Q Consensus 1 ~~g~~g~n~pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~i 80 (95)
||||||.||||+|+.|++++||||||+|+|++++++....++.++++||++|+|+|+++|+|+||||||..++|.|...|
T Consensus 275 kFGHrG~NhPV~dl~tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~yl 354 (368)
T COG0505 275 KFGHRGANHPVKDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYL 354 (368)
T ss_pred ccCCCCCCcCcccccCCeEEEEecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCCCCCCcccHHH
Confidence 79999999999999999999999999999999888865589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 047544 81 FRDFVELMKSVKY 93 (95)
Q Consensus 81 f~~Fi~~~~~~~~ 93 (95)
|+.|+++++..+.
T Consensus 355 Fd~Fi~~~~~~~~ 367 (368)
T COG0505 355 FDEFIELMEAAKK 367 (368)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987653
No 2
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.95 E-value=1.4e-27 Score=181.04 Aligned_cols=89 Identities=60% Similarity=1.075 Sum_probs=83.7
Q ss_pred CCCCCcCCcceeecCCCeEEEccccceeEEccCCCC-CCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHH
Q 047544 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLP-KGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDC 79 (95)
Q Consensus 1 ~~g~~g~n~pv~~~~~~~i~~~s~~H~~~v~~~~l~-~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~ 79 (95)
++||||.||||.++.++++++|+++|+|+|++++++ .+|+++|++++||+||||+|++.|+||||||||+.+++.+...
T Consensus 268 ~~gh~G~nhpV~~~~~~~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQfHPE~~~gp~d~~~ 347 (358)
T TIGR01368 268 KFGHRGGNHPVKDLITGRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEASPGPHDTEY 347 (358)
T ss_pred CcCcCCCceeeEECCCCcEEEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEECCCCCCCCCChHH
Confidence 579999999999999999999999999999987887 6899999988899999999999999999999999988888889
Q ss_pred HHHHHHHHHH
Q 047544 80 VFRDFVELMK 89 (95)
Q Consensus 80 if~~Fi~~~~ 89 (95)
||++|+++++
T Consensus 348 lF~~F~~~~~ 357 (358)
T TIGR01368 348 LFDEFIDLIK 357 (358)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 3
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.93 E-value=6.2e-26 Score=172.17 Aligned_cols=88 Identities=59% Similarity=1.016 Sum_probs=82.8
Q ss_pred CCCCCcCCcceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHH
Q 047544 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCV 80 (95)
Q Consensus 1 ~~g~~g~n~pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~i 80 (95)
++||||.||||.+..++++++++++|+|+|+++++|++|+++|++.+|++||||+++++|+||||||||+.+++.+...|
T Consensus 273 ~~gh~G~~~pv~~~~~~~~~its~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfHPE~~~gp~d~~~l 352 (360)
T PRK12564 273 KFGHRGANHPVKDLETGKVEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEASPGPHDSAYL 352 (360)
T ss_pred CCCccCCceeeEECCCCcEEEEecCcccEEcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCCCCCCHHHH
Confidence 47999999999999999999999999999988889999999999888999999999999999999999999888888899
Q ss_pred HHHHHHHH
Q 047544 81 FRDFVELM 88 (95)
Q Consensus 81 f~~Fi~~~ 88 (95)
|++|++++
T Consensus 353 F~~F~~~~ 360 (360)
T PRK12564 353 FDEFVELM 360 (360)
T ss_pred HHHHHHhC
Confidence 99999863
No 4
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.93 E-value=1.1e-25 Score=170.43 Aligned_cols=91 Identities=43% Similarity=0.801 Sum_probs=83.9
Q ss_pred CCCCCcCCcceeecCCCeEEEccccceeEEccCCCCC-CeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHH
Q 047544 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPK-GVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDC 79 (95)
Q Consensus 1 ~~g~~g~n~pv~~~~~~~i~~~s~~H~~~v~~~~l~~-~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~ 79 (95)
++||||.||||.+..++++++++++|+|+|+.++++. +|.++|++++|++||||+|+++|+||||||||+.+++.+...
T Consensus 262 ~~gh~G~~hpV~~~~~~~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE~~~gp~d~~~ 341 (354)
T PRK12838 262 PFGHRGANHPVIDLTTGRVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEAHPGPHDAEY 341 (354)
T ss_pred CCCccCCceEEEECCCCeEEEeccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCCCCCCCccHHH
Confidence 4799999999999999999999999999998877875 599999988899999999999999999999999988888889
Q ss_pred HHHHHHHHHHhh
Q 047544 80 VFRDFVELMKSV 91 (95)
Q Consensus 80 if~~Fi~~~~~~ 91 (95)
||++|++++++.
T Consensus 342 lF~~F~~~~~~~ 353 (354)
T PRK12838 342 IFDEFLEMMEKA 353 (354)
T ss_pred HHHHHHHHHHhc
Confidence 999999998753
No 5
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.91 E-value=5.8e-25 Score=169.12 Aligned_cols=81 Identities=84% Similarity=1.358 Sum_probs=77.1
Q ss_pred CCCCCcCCcceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHH
Q 047544 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCV 80 (95)
Q Consensus 1 ~~g~~g~n~pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~i 80 (95)
|+||||.||||.++.++++++|+|||+|+|++++||.++++++++++|++||||+|++.|+||||||||+.++|.|...+
T Consensus 335 ~~Gh~G~n~pV~~~~~~~v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFHPEa~pgp~Ds~~~ 414 (415)
T PLN02771 335 KFGHHGGNHPVRNNRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYHPEASPGPHDSDNA 414 (415)
T ss_pred CCCcccceEEEEECCCCCEEEEecCHHHhhccccCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcCCCCCCCCCcChhh
Confidence 58999999999999999999999999999998899999999999889999999999999999999999999999998776
Q ss_pred H
Q 047544 81 F 81 (95)
Q Consensus 81 f 81 (95)
|
T Consensus 415 F 415 (415)
T PLN02771 415 F 415 (415)
T ss_pred C
Confidence 5
No 6
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.90 E-value=1.9e-23 Score=159.57 Aligned_cols=90 Identities=51% Similarity=0.822 Sum_probs=82.7
Q ss_pred CCCCCcCCcceeecCCCeEEEccccceeEEccCCCCC-CeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHH
Q 047544 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPK-GVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDC 79 (95)
Q Consensus 1 ~~g~~g~n~pv~~~~~~~i~~~s~~H~~~v~~~~l~~-~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~ 79 (95)
++||||.||||. .++++++++++|+|++++++++. ++.+++++.+|++||||+|+++|+||||||||+.+++.+...
T Consensus 288 ~~Gh~g~n~pv~--~~~~v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~~pi~gVQFHPE~~~gp~d~~~ 365 (382)
T CHL00197 288 KFGHRGLNHPSG--LNQQVEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQYHPEASPGPHDADY 365 (382)
T ss_pred CCCCCCCCEecC--CCCceEEeecchheEeeccccCCCCcEEEEEECCCCCEEEEEECCCCcEEEeeCCCCCCCCCCHHH
Confidence 579999999997 68899999999999999888885 799999988899999999999999999999999988888888
Q ss_pred HHHHHHHHHHhhh
Q 047544 80 VFRDFVELMKSVK 92 (95)
Q Consensus 80 if~~Fi~~~~~~~ 92 (95)
||++|++++++.+
T Consensus 366 lf~~Fv~~~~~~~ 378 (382)
T CHL00197 366 LFEYFIEIIKHSK 378 (382)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999997654
No 7
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.86 E-value=1.7e-21 Score=134.59 Aligned_cols=84 Identities=57% Similarity=1.038 Sum_probs=74.6
Q ss_pred CCCCcCCcceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHH
Q 047544 2 FGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVF 81 (95)
Q Consensus 2 ~g~~g~n~pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if 81 (95)
.+|+|.+|||.....++.++++++|+|+|+++++|++|+++|++++|+.|||+++++.|+||||||||+...+.+...||
T Consensus 95 ~~~~g~~~~v~~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfHPE~~~~~~~~~~lf 174 (178)
T cd01744 95 FGHRGSNHPVKDLITGRVYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQFHPEASPGPHDTEYLF 174 (178)
T ss_pred CCCCCCceeeEEcCCCCcEEEEcCceEEEcccccCCceEEEEEECCCCcEEEEEECCCCeEEEeeCCCCCCCCCCchHhH
Confidence 47889999998777778888899999999877899999999998778999999999999999999999987665677899
Q ss_pred HHHH
Q 047544 82 RDFV 85 (95)
Q Consensus 82 ~~Fi 85 (95)
++|+
T Consensus 175 ~~f~ 178 (178)
T cd01744 175 DEFL 178 (178)
T ss_pred hhhC
Confidence 9985
No 8
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.86 E-value=6.5e-22 Score=162.43 Aligned_cols=92 Identities=45% Similarity=0.757 Sum_probs=88.9
Q ss_pred CCCCCcCCcceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHH
Q 047544 1 KFGHHGGNHPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCV 80 (95)
Q Consensus 1 ~~g~~g~n~pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~i 80 (95)
|||+||.|+||.+..+|.|++|||+|+|+|+..+||.+|..+..+.+|+.-|+|.|...|++++|||||..++|.|...+
T Consensus 265 KyGNRGhNiP~~~~~tGrc~ITSQNHGYAVD~~tLp~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyL 344 (1435)
T KOG0370|consen 265 KYGNRGHNIPCTCRATGRCFITSQNHGYAVDPATLPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYL 344 (1435)
T ss_pred eccccCCCccceeccCceEEEEecCCceeeccccccCCCchheeecccCCCceEecCCCCceeeecCCcCCCCCcchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 047544 81 FRDFVELMKSVK 92 (95)
Q Consensus 81 f~~Fi~~~~~~~ 92 (95)
|+.|++.+.+.+
T Consensus 345 FDiFi~lvkk~k 356 (1435)
T KOG0370|consen 345 FDVFIELVKKSK 356 (1435)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 9
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.81 E-value=1.3e-19 Score=127.37 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=65.2
Q ss_pred ceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 10 PVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 10 pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
+++.-.+..+.+ .+||+..++++++|++|+++|++.+|++|||++|+++|++|||||||+.. ++.+..|+++|++.
T Consensus 115 ~iF~glp~~f~v-~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~~pi~gvQFHPESil-T~~G~~il~Nfl~~ 190 (191)
T COG0512 115 GLFAGLPNPFTV-TRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKKLPIYGVQFHPESIL-TEYGHRILENFLRL 190 (191)
T ss_pred ccccCCCCCCEE-EeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCCCCEEEEecCCcccc-ccchHHHHHHHHhh
Confidence 555555666664 78999999999999999999998666799999999999999999999986 45567899999975
No 10
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.80 E-value=4.2e-19 Score=123.83 Aligned_cols=83 Identities=20% Similarity=0.358 Sum_probs=68.6
Q ss_pred CCCCcCCcceeecCCCeE------EEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCC
Q 047544 2 FGHHGGNHPVHNIQNGRV------EISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPD 75 (95)
Q Consensus 2 ~g~~g~n~pv~~~~~~~i------~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~ 75 (95)
.+++|.++||....++.. +.+.++|+++|+..++|++++++|++ +|+.|||+++.+.|++|||||||+..+ .
T Consensus 98 ~~~~g~~~~v~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~~-~~~~i~a~~~~~~~i~GvQfHPE~~~t-~ 175 (187)
T PRK08007 98 KVMHGKTSPITHNGEGVFRGLANPLTVTRYHSLVVEPDSLPACFEVTAWS-ETREIMGIRHRQWDLEGVQFHPESILS-E 175 (187)
T ss_pred CcccCCceEEEECCCCcccCCCCCcEEEEcchhEEccCCCCCCeEEEEEe-CCCcEEEEEeCCCCEEEEEeCCcccCC-c
Confidence 456788888876543322 35688999999866799999999996 699999999999999999999999864 4
Q ss_pred ChHHHHHHHHH
Q 047544 76 DSDCVFRDFVE 86 (95)
Q Consensus 76 ~~~~if~~Fi~ 86 (95)
.+..||++|++
T Consensus 176 ~G~~il~nFl~ 186 (187)
T PRK08007 176 QGHQLLANFLH 186 (187)
T ss_pred chHHHHHHHhh
Confidence 66789999986
No 11
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.79 E-value=2.3e-19 Score=129.54 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=56.9
Q ss_pred EEEccccceeEEccCC----CCCCeEEEEEeCCCCeEEEEEeCCCCEE-EEeccCCCCCCCCChHHHHHHHH
Q 047544 19 VEISAQNHNYAVDPAT----LPKGVEVTHINLNDGTCAGLAYPALNVM-SLQYHLEASPGPDDSDCVFRDFV 85 (95)
Q Consensus 19 i~~~s~~H~~~v~~~~----l~~~~~v~a~~~~dg~iEai~~~~~pi~-gvQfHPE~~~~~~~~~~if~~Fi 85 (95)
..+++++|+|+|+++. ++.+|+++|++.+||+|||+|++++|++ |||||||.++.+.+..+||+.|+
T Consensus 164 ~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 164 EVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred EEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 3467889999997633 3689999999877999999999999987 99999999887666778999985
No 12
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.79 E-value=4.2e-19 Score=139.89 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=71.8
Q ss_pred CCCCC-----cCCcceeecCCCeEE--------------------------------EccccceeEEccCCC----CCCe
Q 047544 1 KFGHH-----GGNHPVHNIQNGRVE--------------------------------ISAQNHNYAVDPATL----PKGV 39 (95)
Q Consensus 1 ~~g~~-----g~n~pv~~~~~~~i~--------------------------------~~s~~H~~~v~~~~l----~~~~ 39 (95)
+.+|+ +.+|||+++.++... +++++|+|+|++... ..||
T Consensus 397 ~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~~GL 476 (525)
T TIGR00337 397 KGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLENKGL 476 (525)
T ss_pred CCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCChHHHHhCCCceeecccceEEECHHHHHhhhhCCe
Confidence 35677 789999987765432 578999999987443 2799
Q ss_pred EEEEEeCCCCeEEEEEeCCCCEE-EEeccCCCCCCCCChHHHHHHHHHH
Q 047544 40 EVTHINLNDGTCAGLAYPALNVM-SLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 40 ~v~a~~~~dg~iEai~~~~~pi~-gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
+++|+++++|+|||||++++||+ |||||||+.+.+.+..+||+.|+++
T Consensus 477 ~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~A 525 (525)
T TIGR00337 477 IVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVKA 525 (525)
T ss_pred EEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHhC
Confidence 99999876579999999999976 9999999998887888999999863
No 13
>PLN02327 CTP synthase
Probab=99.75 E-value=1e-18 Score=138.28 Aligned_cols=91 Identities=14% Similarity=0.308 Sum_probs=73.9
Q ss_pred CCCCCcCCcceeecCCCeE------EEccccceeEEccCCCC----CCeEEEEEeCCCCeEEEEEeCCCCEE-EEeccCC
Q 047544 1 KFGHHGGNHPVHNIQNGRV------EISAQNHNYAVDPATLP----KGVEVTHINLNDGTCAGLAYPALNVM-SLQYHLE 69 (95)
Q Consensus 1 ~~g~~g~n~pv~~~~~~~i------~~~s~~H~~~v~~~~l~----~~~~v~a~~~~dg~iEai~~~~~pi~-gvQfHPE 69 (95)
++|||+.++++.+-...++ ..+.|+|+|+|+++++. .+|.++|+++++++||++|++++||+ |||||||
T Consensus 448 RLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE 527 (557)
T PLN02327 448 RLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPE 527 (557)
T ss_pred ECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCC
Confidence 4799999998655332222 23788899999986653 79999999865568999999999987 9999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhh
Q 047544 70 ASPGPDDSDCVFRDFVELMKSV 91 (95)
Q Consensus 70 ~~~~~~~~~~if~~Fi~~~~~~ 91 (95)
+++.+.+..+||..|++++.+.
T Consensus 528 ~~s~p~~~~pLF~~Fv~Aa~~~ 549 (557)
T PLN02327 528 FKSRPGKPSPLFLGLIAAASGQ 549 (557)
T ss_pred CCCCCCCchHHHHHHHHHHHHh
Confidence 9987777789999999998764
No 14
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.73 E-value=5.5e-18 Score=122.57 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=58.0
Q ss_pred EEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCC-EEEEeccCCCCCCCC-ChHHHHHHHHHHHHhh
Q 047544 19 VEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN-VMSLQYHLEASPGPD-DSDCVFRDFVELMKSV 91 (95)
Q Consensus 19 i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~p-i~gvQfHPE~~~~~~-~~~~if~~Fi~~~~~~ 91 (95)
..||| .|+|+|+ +|+++|.++|++ +||+|||+++++.. ++|||||||.+...+ ....||+.|++.++.+
T Consensus 171 ~~VNS-~HhQaIk--~La~~L~V~A~a-~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 171 FMVNS-FHHQAIK--KLAPGLVVEARA-PDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred eeecc-hHHHHHH--HhCCCcEEEEEC-CCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 56655 6779996 599999999996 69999999999744 579999999987554 3568999999999876
No 15
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.73 E-value=2.5e-17 Score=114.57 Aligned_cols=83 Identities=25% Similarity=0.422 Sum_probs=66.0
Q ss_pred CCCcCCcceeec-------CCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCC
Q 047544 3 GHHGGNHPVHNI-------QNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPD 75 (95)
Q Consensus 3 g~~g~n~pv~~~-------~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~ 75 (95)
+++|.++||... .+.++ .+.++|++.|+..++|++++++|++ +|+.|||+++++.|+||||||||+..+ .
T Consensus 99 ~~~g~~~~v~~~~~~l~~~~~~~~-~v~~~H~~~v~~~~lp~~~~~la~s-~~~~i~a~~~~~~~~~gvQfHPE~~~~-~ 175 (189)
T PRK05670 99 IMHGKTSPIEHDGSGIFAGLPNPF-TVTRYHSLVVDRESLPDCLEVTAWT-DDGEIMGVRHKELPIYGVQFHPESILT-E 175 (189)
T ss_pred cccCceeEEEeCCCchhccCCCCc-EEEcchhheeccccCCCceEEEEEe-CCCcEEEEEECCCCEEEEeeCCCcCCC-c
Confidence 456766676631 12233 3578999999755699999999997 799999999999999999999999754 4
Q ss_pred ChHHHHHHHHHHH
Q 047544 76 DSDCVFRDFVELM 88 (95)
Q Consensus 76 ~~~~if~~Fi~~~ 88 (95)
++..||++|++++
T Consensus 176 ~g~~i~~~F~~~~ 188 (189)
T PRK05670 176 HGHKLLENFLELA 188 (189)
T ss_pred chHHHHHHHHHhh
Confidence 6779999999875
No 16
>PLN02335 anthranilate synthase
Probab=99.73 E-value=2.8e-17 Score=117.62 Aligned_cols=87 Identities=22% Similarity=0.429 Sum_probs=68.7
Q ss_pred CCcCCcceeecCCC---------eEEEccccceeEEccCCCCCC-eEEEEEeCCCCeEEEEEeCCCC-EEEEeccCCCCC
Q 047544 4 HHGGNHPVHNIQNG---------RVEISAQNHNYAVDPATLPKG-VEVTHINLNDGTCAGLAYPALN-VMSLQYHLEASP 72 (95)
Q Consensus 4 ~~g~n~pv~~~~~~---------~i~~~s~~H~~~v~~~~l~~~-~~v~a~~~~dg~iEai~~~~~p-i~gvQfHPE~~~ 72 (95)
.+|.+.|+.....+ ..+.+.++|+++|+.+++|.+ |+++|++ +|+.|||++++++| +||||||||+..
T Consensus 120 ~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~-~~~~v~ai~~~~~~~i~GvQfHPE~~~ 198 (222)
T PLN02335 120 MHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWT-EDGLIMAARHRKYKHIQGVQFHPESII 198 (222)
T ss_pred ccCceeeeEECCCCCChhhhCCCCCCEEEechhheEecccCCCCceEEEEEc-CCCCEEEEEecCCCCEEEEEeCCCCCC
Confidence 45666776533221 123468899999987778876 9999996 79999999999988 899999999985
Q ss_pred CCCChHHHHHHHHHHHHhhh
Q 047544 73 GPDDSDCVFRDFVELMKSVK 92 (95)
Q Consensus 73 ~~~~~~~if~~Fi~~~~~~~ 92 (95)
. .++..||++|++.+..++
T Consensus 199 ~-~~g~~i~~nF~~~~~~~~ 217 (222)
T PLN02335 199 T-TEGKTIVRNFIKIIEKKE 217 (222)
T ss_pred C-hhHHHHHHHHHHHHHhhc
Confidence 4 567899999999987653
No 17
>PRK06186 hypothetical protein; Validated
Probab=99.71 E-value=1.8e-17 Score=119.60 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=58.3
Q ss_pred eEEEccccceeEEccCC----CCCCeEEEEEeCCCCeEEEEEeCCCCE-EEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 18 RVEISAQNHNYAVDPAT----LPKGVEVTHINLNDGTCAGLAYPALNV-MSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 18 ~i~~~s~~H~~~v~~~~----l~~~~~v~a~~~~dg~iEai~~~~~pi-~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
...+++++|+|.|++.. .+.||.++|++ .||+|||+|.+++|+ +|||||||+++.+....+||+.|++++..
T Consensus 152 ~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s-~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa~~ 228 (229)
T PRK06186 152 LEIEEGYHCRYGVNPEFVAALESGDLRVTGWD-EDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAARA 228 (229)
T ss_pred CeeeeeccccEEECHHHHHHHhcCCeEEEEEc-CCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHHhc
Confidence 33456788888887411 26899999996 699999999999996 59999999987666667899999998764
No 18
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.71 E-value=8.2e-17 Score=112.30 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=57.1
Q ss_pred EEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 20 EISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 20 ~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
..+.++|+++|+.+++|++++++|++.+++.|||++++++|+||||||||+..+ ..+..||++|+.
T Consensus 122 ~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~~~i~gvQfHPE~~~t-~~G~~il~nfl~ 187 (188)
T TIGR00566 122 LTATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPESILS-EQGHQLLANFLH 187 (188)
T ss_pred cEEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCCCCEEEEEeCCCccCC-cccHHHHHHHHh
Confidence 345789999997778999999999975556999999999999999999999864 567789999985
No 19
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.69 E-value=4.7e-17 Score=118.41 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=58.0
Q ss_pred eEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCE-EEEeccCCCCCCCCC-hHHHHHHHHHHHHhh
Q 047544 18 RVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNV-MSLQYHLEASPGPDD-SDCVFRDFVELMKSV 91 (95)
Q Consensus 18 ~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi-~gvQfHPE~~~~~~~-~~~if~~Fi~~~~~~ 91 (95)
.+.| +++|+|+|+ .||++|+++|++ +||.||||++++.++ +|||||||+...+.. ...||++|++.++.+
T Consensus 176 ~~~V-ns~H~q~V~--~l~~gl~v~A~s-~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~ 247 (254)
T PRK11366 176 NFWV-NSLHGQGAK--VVSPRLRVEARS-PDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHH 247 (254)
T ss_pred eEEe-ehHHHHHHh--hcccceEEEEEc-CCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHH
Confidence 4565 557889996 699999999996 799999999999986 899999999864332 357999999998754
No 20
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.66 E-value=6.1e-16 Score=108.74 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=66.5
Q ss_pred CCCcCCcceeecC-------CCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCC
Q 047544 3 GHHGGNHPVHNIQ-------NGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPD 75 (95)
Q Consensus 3 g~~g~n~pv~~~~-------~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~ 75 (95)
+.+|.++++.... +.. ..+.++|++.|...++|++++++|++ +++.|||+++++.|+||||||||+..+ .
T Consensus 99 ~~~G~~~~i~~~~~~lf~~~~~~-~~v~~~H~~~v~~~~lp~~~~~~a~s-~~~~v~a~~~~~~~i~gvQFHPE~~~t-~ 175 (195)
T PRK07649 99 LMHGKTSLMHHDGKTIFSDIPNP-FTATRYHSLIVKKETLPDCLEVTSWT-EEGEIMAIRHKTLPIEGVQFHPESIMT-S 175 (195)
T ss_pred cccCCeEEEEECCChhhcCCCCC-CEEEEechheEecccCCCCeEEEEEc-CCCcEEEEEECCCCEEEEEECCCCCCC-c
Confidence 4556666555321 122 34688999999756799999999996 689999999999999999999998754 4
Q ss_pred ChHHHHHHHHHHHHh
Q 047544 76 DSDCVFRDFVELMKS 90 (95)
Q Consensus 76 ~~~~if~~Fi~~~~~ 90 (95)
++..||++|++.+..
T Consensus 176 ~g~~il~nfl~~~~~ 190 (195)
T PRK07649 176 HGKELLQNFIRKYSP 190 (195)
T ss_pred cHHHHHHHHHHHhHh
Confidence 577899999997653
No 21
>CHL00101 trpG anthranilate synthase component 2
Probab=99.66 E-value=5.7e-16 Score=108.11 Aligned_cols=65 Identities=23% Similarity=0.440 Sum_probs=56.7
Q ss_pred EccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCC-EEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 21 ISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALN-VMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 21 ~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~p-i~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
.+.++|+++|+..++|++++++|++ +|+.+||+++++.| +||||||||+.. +..+..||++|++.
T Consensus 123 ~v~~~H~~~v~~~~lp~~~~vla~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~-~~~g~~l~~nf~~~ 188 (190)
T CHL00101 123 TATRYHSLIIDPLNLPSPLEITAWT-EDGLIMACRHKKYKMLRGIQFHPESLL-TTHGQQILRNFLSL 188 (190)
T ss_pred EEEcchhheeecccCCCceEEEEEc-CCCcEEEEEeCCCCCEEEEEeCCccCC-ChhHHHHHHHHHhh
Confidence 4578999999766799999999995 79999999999999 999999999974 44567899999885
No 22
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.65 E-value=1.3e-15 Score=106.53 Aligned_cols=65 Identities=23% Similarity=0.372 Sum_probs=55.0
Q ss_pred ccccceeEEccCCCCCCeEEEEEeCC-CC---eEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 22 SAQNHNYAVDPATLPKGVEVTHINLN-DG---TCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~~~~~v~a~~~~-dg---~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
+.++|+++|+..+||++++++|++.. |+ .|||+++++.|+||||||||+..+ ..+..||++|++.
T Consensus 124 v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t-~~g~~i~~nFl~~ 192 (193)
T PRK08857 124 VTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKT-EQGHQLLANFLAR 192 (193)
T ss_pred EEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCC-cchHHHHHHHHhh
Confidence 46789999976689999999998742 43 599999999999999999999854 4578999999874
No 23
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.63 E-value=1.4e-15 Score=120.43 Aligned_cols=85 Identities=21% Similarity=0.425 Sum_probs=69.1
Q ss_pred CCCcCCcceeecCC-------CeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCC
Q 047544 3 GHHGGNHPVHNIQN-------GRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPD 75 (95)
Q Consensus 3 g~~g~n~pv~~~~~-------~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~ 75 (95)
+++|.+++|....+ ..+. +.++|+++|+..++|++++++|++ +|+.|||++++++|+||||||||+. .+.
T Consensus 100 ~~~G~~~~v~~~~~~lf~~~~~~~~-v~~~Hs~~v~~~~lp~~~~vlA~s-~d~~i~a~~~~~~pi~GvQFHPE~~-~t~ 176 (534)
T PRK14607 100 ILHGKTSPIDHNGKGLFRGIPNPTV-ATRYHSLVVEEASLPECLEVTAKS-DDGEIMGIRHKEHPIFGVQFHPESI-LTE 176 (534)
T ss_pred cccCCceeEEECCCcchhcCCCCcE-EeeccchheecccCCCCeEEEEEc-CCCCEEEEEECCCCEEEEEeCCCCC-CCh
Confidence 56788777765322 2234 578999999766799999999996 7999999999999999999999986 455
Q ss_pred ChHHHHHHHHHHHHh
Q 047544 76 DSDCVFRDFVELMKS 90 (95)
Q Consensus 76 ~~~~if~~Fi~~~~~ 90 (95)
++..||++|++.+..
T Consensus 177 ~g~~i~~nFl~~~~~ 191 (534)
T PRK14607 177 EGKRILKNFLNYQRE 191 (534)
T ss_pred hHHHHHHHHHHHhhc
Confidence 678999999998753
No 24
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.63 E-value=4.9e-16 Score=122.79 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=58.8
Q ss_pred ccccceeEEccCC---C-CCCeEEEEEeCCCCeEEEEEeCCCCEE-EEeccCCCCCCCCChHHHHHHHHHHHHhhhc
Q 047544 22 SAQNHNYAVDPAT---L-PKGVEVTHINLNDGTCAGLAYPALNVM-SLQYHLEASPGPDDSDCVFRDFVELMKSVKY 93 (95)
Q Consensus 22 ~s~~H~~~v~~~~---l-~~~~~v~a~~~~dg~iEai~~~~~pi~-gvQfHPE~~~~~~~~~~if~~Fi~~~~~~~~ 93 (95)
..++|+|.|++.. + ..||.++|+++++++|||+|.+++||+ |||||||+.+.+.+..+||+.|++++.+++.
T Consensus 455 ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~~ 531 (533)
T PRK05380 455 ERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENKK 531 (533)
T ss_pred eecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHhh
Confidence 3567777776532 1 148999999865679999999999976 9999999998777788999999999987654
No 25
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.62 E-value=3.4e-15 Score=104.04 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=55.2
Q ss_pred eEEEccccceeEEccCCCCCCeEEEEEeCCCC---eEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 18 RVEISAQNHNYAVDPATLPKGVEVTHINLNDG---TCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 18 ~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg---~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
... +.++|+|.|+..++|+++.++|++..|+ .|+|+++++.|+||||||||+..++ .+..||++|++
T Consensus 121 ~~~-v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~-~G~~i~~nf~~ 190 (191)
T PRK06774 121 PLT-VTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSE-QGHQLLDNFLK 190 (191)
T ss_pred CcE-EEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcCCCc-cHHHHHHHHhh
Confidence 344 4778999997667999999999986565 4678899999999999999997654 56789999985
No 26
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.61 E-value=5.2e-15 Score=105.31 Aligned_cols=85 Identities=20% Similarity=0.315 Sum_probs=65.3
Q ss_pred CCCcCCcceeecCC------CeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCC
Q 047544 3 GHHGGNHPVHNIQN------GRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDD 76 (95)
Q Consensus 3 g~~g~n~pv~~~~~------~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~ 76 (95)
+.+|..++|..... .+...+.++|++.|.+.++|+++.++|.+ +|+.+||+++++.++||||||||+.. ...
T Consensus 103 ~~~g~~~~v~~~~~~~~~~~~~~~~v~~~H~~~v~~~~lp~~~~vla~s-~~~~vqa~~~~~~~i~gvQfHPE~~~-t~~ 180 (214)
T PRK07765 103 LLHGKTSSVHHTGVGVLAGLPDPFTATRYHSLTILPETLPAELEVTART-DSGVIMAVRHRELPIHGVQFHPESVL-TEG 180 (214)
T ss_pred CccCceeEEEECCCccccCCCCccEEEecchheEecccCCCceEEEEEc-CCCcEEEEEeCCCCEEEEeeCCCccc-Ccc
Confidence 33466556553221 12334577899999876799999999996 69999999999999999999999874 334
Q ss_pred hHHHHHHHHHHHH
Q 047544 77 SDCVFRDFVELMK 89 (95)
Q Consensus 77 ~~~if~~Fi~~~~ 89 (95)
+..++.+|+..|.
T Consensus 181 g~~~l~~f~~~~~ 193 (214)
T PRK07765 181 GHRMLANWLTVCG 193 (214)
T ss_pred hHHHHHHHHHHhc
Confidence 6689999998874
No 27
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.58 E-value=5.8e-15 Score=122.48 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=61.0
Q ss_pred EccccceeEEccCCCCCCeEEEEEeCCC----------------------------------------------------
Q 047544 21 ISAQNHNYAVDPATLPKGVEVTHINLND---------------------------------------------------- 48 (95)
Q Consensus 21 ~~s~~H~~~v~~~~l~~~~~v~a~~~~d---------------------------------------------------- 48 (95)
.+.+||++.|+.++||++|+++||..++
T Consensus 217 ~v~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (918)
T PLN02889 217 KVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNG 296 (918)
T ss_pred eEEeCCCcccccCCCCCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 4578999999877899999999997431
Q ss_pred CeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHHhh
Q 047544 49 GTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMKSV 91 (95)
Q Consensus 49 g~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~~~ 91 (95)
++|||++|+++|+||||||||+... ..+..||++|++.+..+
T Consensus 297 ~viMairH~~~P~~GVQfHPESi~t-~~G~~l~~nF~~~~~~~ 338 (918)
T PLN02889 297 KILMGIMHSTRPHYGLQFHPESIAT-CYGRQIFKNFREITQDY 338 (918)
T ss_pred CeeEEEEECCCceEEEEeCCccccC-chhHHHHHHHHHHHHHH
Confidence 6899999999999999999999865 45678999999998765
No 28
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.57 E-value=1.3e-14 Score=101.01 Aligned_cols=68 Identities=16% Similarity=0.368 Sum_probs=56.7
Q ss_pred CeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 17 GRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 17 ~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
.... +.++|++.+...++|.++.++|.+ +++.++|+++.++|+||+|||||+..+. .+..|+++|++.
T Consensus 121 ~~~~-v~~~Hs~~v~~~~lp~~l~~~a~~-~~~~i~a~~~~~~pi~GvQFHPE~~~~~-~g~~il~nf~~~ 188 (190)
T PRK06895 121 EEFN-IGLYHSWAVSEENFPTPLEITAVC-DENVVMAMQHKTLPIYGVQFHPESYISE-FGEQILRNWLAI 188 (190)
T ss_pred CceE-EEcchhheecccccCCCeEEEEEC-CCCcEEEEEECCCCEEEEEeCCCcCCCc-chHHHHHHHHhh
Confidence 3444 467899999766789999999985 6899999999999999999999997544 456799999874
No 29
>PRK00758 GMP synthase subunit A; Validated
Probab=99.55 E-value=1.5e-14 Score=99.99 Aligned_cols=68 Identities=18% Similarity=0.362 Sum_probs=56.8
Q ss_pred eEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 18 RVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 18 ~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
.+.+ .+.|++.|. ++|++++++|.+ +++.|||+++++.|++|||||||+... .++..||++|++.+..
T Consensus 116 ~~~~-~~~H~~~v~--~l~~~~~~la~~-~~~~v~a~~~~~~~~~g~QfHPE~~~~-~~g~~l~~~f~~~~~~ 183 (184)
T PRK00758 116 EIRV-WASHADEVK--ELPDGFEILARS-DICEVEAMKHKEKPIYGVQFHPEVAHT-EYGEEIFKNFLEICGK 183 (184)
T ss_pred CcEE-Eeehhhhhh--hCCCCCEEEEEC-CCCCEEEEEECCCCEEEEEcCCccCCC-chHHHHHHHHHHHHcc
Confidence 3443 568999995 599999999985 689999999999999999999999743 4667999999987654
No 30
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.55 E-value=3.9e-14 Score=100.62 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=55.8
Q ss_pred eEEEccccceeEEccCCCCCCeEEEEEeCCC--CeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHH
Q 047544 18 RVEISAQNHNYAVDPATLPKGVEVTHINLND--GTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMK 89 (95)
Q Consensus 18 ~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~d--g~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~ 89 (95)
++. +.++|++.|. .+|++++++|++.++ +++|++++.+.++||||||||+.. +..+..||++|++...
T Consensus 137 ~~~-V~~~H~~~v~--~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~-T~~G~~il~nfl~~~~ 206 (208)
T PRK05637 137 KVP-IARYHSLGCV--VAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVL-SPTGPIILSRCVEQLL 206 (208)
T ss_pred ceE-EEEechhhhh--cCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCc-CCCHHHHHHHHHHHHh
Confidence 444 4668999995 599999999986432 478999999999999999999985 4467789999998764
No 31
>PRK13566 anthranilate synthase; Provisional
Probab=99.55 E-value=2.5e-14 Score=116.64 Aligned_cols=87 Identities=25% Similarity=0.355 Sum_probs=69.0
Q ss_pred CCCCcCCcceeecCCCeEE-------EccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCC-
Q 047544 2 FGHHGGNHPVHNIQNGRVE-------ISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPG- 73 (95)
Q Consensus 2 ~g~~g~n~pv~~~~~~~i~-------~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~- 73 (95)
.+++|..++|....++.++ .+.++|++.+...++|++++++|.+ +|+.||||++++.|+||||||||+...
T Consensus 624 ~~~~G~~~~V~v~~~~~Lf~~lp~~~~v~~~Hs~~v~~~~Lp~~~~vlA~s-~dg~V~ai~~~~~pi~GVQFHPE~i~t~ 702 (720)
T PRK13566 624 YPMHGKPSRIRVRGPGRLFSGLPEEFTVGRYHSLFADPETLPDELLVTAET-EDGVIMAIEHKTLPVAAVQFHPESIMTL 702 (720)
T ss_pred CCccCCceEEEECCCCchhhcCCCCCEEEEecceeEeeccCCCceEEEEEe-CCCcEEEEEECCCCEEEEeccCeeCCcC
Confidence 3566777777654443332 3578999988766799999999997 799999999999999999999999754
Q ss_pred -CCChHHHHHHHHHHHH
Q 047544 74 -PDDSDCVFRDFVELMK 89 (95)
Q Consensus 74 -~~~~~~if~~Fi~~~~ 89 (95)
.+.+..||++|++.+.
T Consensus 703 ~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 703 GGDVGLRIIENVVRLLA 719 (720)
T ss_pred CchhHHHHHHHHHHHhh
Confidence 2347799999999874
No 32
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.54 E-value=5.1e-14 Score=97.30 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=59.8
Q ss_pred CCCcCCcceeecCCC------eEEEccccceeEEccCCCCCC--eEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCC
Q 047544 3 GHHGGNHPVHNIQNG------RVEISAQNHNYAVDPATLPKG--VEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGP 74 (95)
Q Consensus 3 g~~g~n~pv~~~~~~------~i~~~s~~H~~~v~~~~l~~~--~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~ 74 (95)
+..|.++||.....+ ....+.+.|++.|+. ++.+ +.++|.+ +++.|+|+++.+.|+||+|||||+...
T Consensus 98 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~H~~~v~~--~~~~~~~~~la~~-~~~~v~a~~~~~~~i~gvQfHPE~~~~- 173 (184)
T cd01743 98 PMHGKTSEIHHDGSGLFKGLPQPFTVGRYHSLVVDP--DPLPDLLEVTAST-EDGVIMALRHRDLPIYGVQFHPESILT- 173 (184)
T ss_pred CCcCceeEEEECCCccccCCCCCcEEEeCcEEEEec--CCCCceEEEEEeC-CCCeEEEEEeCCCCEEEEeeCCCcCCC-
Confidence 455666777643221 123357789999974 5555 9999985 689999999999999999999999754
Q ss_pred CChHHHHHHHH
Q 047544 75 DDSDCVFRDFV 85 (95)
Q Consensus 75 ~~~~~if~~Fi 85 (95)
+.+..||++|+
T Consensus 174 ~~g~~l~~~f~ 184 (184)
T cd01743 174 EYGLRLLENFL 184 (184)
T ss_pred cchHHHHHhhC
Confidence 45778999994
No 33
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.54 E-value=3.5e-14 Score=115.72 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=68.1
Q ss_pred CCCCcCCcceeecCCCeE-------EEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCC
Q 047544 2 FGHHGGNHPVHNIQNGRV-------EISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGP 74 (95)
Q Consensus 2 ~g~~g~n~pv~~~~~~~i-------~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~ 74 (95)
.+|+|.+++|....++.+ ....++|+|.++..++|+++.++|.+ +|+.||||++...|+||||||||+...+
T Consensus 614 ~p~~G~~~~V~~~~~~~Lf~~lp~~~~v~~~HS~~~~~~~LP~~~~vlA~s-~d~~v~Ai~~~~~~i~GVQFHPEsi~T~ 692 (717)
T TIGR01815 614 EPVHGKASRIRVLGPDALFAGLPERLTVGRYHSLFARRDRLPAELTVTAES-ADGLIMAIEHRRLPLAAVQFHPESIMTL 692 (717)
T ss_pred CCeeCcceEEEECCCChhhhcCCCCCEEEEECCCCcccccCCCCeEEEEEe-CCCcEEEEEECCCCEEEEEeCCeeCCcc
Confidence 467786666653322221 23467999988766799999999997 7899999999999999999999997543
Q ss_pred C--ChHHHHHHHHHHHHh
Q 047544 75 D--DSDCVFRDFVELMKS 90 (95)
Q Consensus 75 ~--~~~~if~~Fi~~~~~ 90 (95)
. .+..||++|+..+..
T Consensus 693 sg~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 693 DGGAGLAMIGNVVDRLAA 710 (717)
T ss_pred CchhHHHHHHHHHHHHhh
Confidence 3 367899999988863
No 34
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.52 E-value=1.3e-14 Score=101.26 Aligned_cols=61 Identities=28% Similarity=0.375 Sum_probs=53.5
Q ss_pred ccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCC-CCEEEEeccCCCCCC-CCChHHHHHHHH
Q 047544 22 SAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPA-LNVMSLQYHLEASPG-PDDSDCVFRDFV 85 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~-~pi~gvQfHPE~~~~-~~~~~~if~~Fi 85 (95)
++++|+++|. .+|++++++|.+ +|+.|||+++++ .+++|||||||+... +.++..||++|+
T Consensus 127 v~~~H~~~v~--~~~~~~~vla~~-~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 127 VNSLHHQAIK--RLADGLRVEARA-PDGVIEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred eechHHHHHh--hcCCCCEEEEEC-CCCcEEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 5678999996 589999999985 799999999998 789999999999876 567789999984
No 35
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.51 E-value=1.7e-14 Score=102.82 Aligned_cols=49 Identities=31% Similarity=0.545 Sum_probs=41.2
Q ss_pred CeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCC--CEEEEeccCC
Q 047544 17 GRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPAL--NVMSLQYHLE 69 (95)
Q Consensus 17 ~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~--pi~gvQfHPE 69 (95)
.++.+|| +|+|+|++ |+++|+++|++. ||+||||+..+. |++|||||||
T Consensus 167 ~~~~vns-~Hhq~v~~--l~~~l~v~A~s~-Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 167 EEIEVNS-FHHQAVKP--LGEGLRVTARSP-DGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp CTEEEEE-EECEEECC--HHCCEEEEEEEC-TSSEEEEEECCESS-EEEESS-CC
T ss_pred Ccceeec-chhhhhhc--cCCCceEEEEec-CCcEEEEEEcCCCCCEEEEEeCCC
Confidence 5778766 57799974 999999999985 999999999994 6899999998
No 36
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.50 E-value=3.4e-14 Score=98.92 Aligned_cols=67 Identities=18% Similarity=0.414 Sum_probs=59.0
Q ss_pred ccccceeEEccCCCC-CCeEEEEEeCCCCeEEEEEeCCCC-EEEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 22 SAQNHNYAVDPATLP-KGVEVTHINLNDGTCAGLAYPALN-VMSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~-~~~~v~a~~~~dg~iEai~~~~~p-i~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
+.+||+.+....++| +.|++|||. +||+|||.+|+.+. +-|||||||+... +.++.+.++|++...+
T Consensus 148 V~RYHSLa~~~sSlP~d~L~VTawT-EnG~iMgaRHkKY~~ieGVQfHPESIlt-eeGk~~irNflni~~~ 216 (223)
T KOG0026|consen 148 VGRYHSLVIEKDSFPSDELEVTAWT-EDGLVMAARHRKYKHIQGVQFHPESIIT-TEGKTIVRNFIKIVEK 216 (223)
T ss_pred EEeeeeeeeecccCCccceeeeEec-cCcEEEeeeccccccccceeecchhhhh-hhhHHHHHHHHHhccc
Confidence 478999999998999 789999995 89999999999988 7799999999964 4567899999998754
No 37
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.50 E-value=8.3e-14 Score=96.62 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=54.9
Q ss_pred CeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 17 GRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 17 ~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
.++.+ .+.|++++. .+|++++++|.+ +++.++|+++++.|+||+|||||...+ .++..||++|+..
T Consensus 118 ~~~~~-~~~H~~~v~--~l~~~~~vla~~-~~~~v~a~~~~~~~~~g~QfHPE~~~~-~~g~~i~~~f~~~ 183 (188)
T TIGR00888 118 DESTV-WMSHGDKVK--ELPEGFKVLATS-DNCPVAAMAHEEKPIYGVQFHPEVTHT-EYGNELLENFVYD 183 (188)
T ss_pred CCcEE-EeEccceee--cCCCCCEEEEEC-CCCCeEEEEECCCCEEEEeeCCccCCC-hhhHHHHHHHHHH
Confidence 34554 457999995 589999999986 589999999999999999999999743 3567899999984
No 38
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.49 E-value=1.6e-13 Score=112.18 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=63.9
Q ss_pred CCCcCCcceeecCCCeE------EEccccceeEEccCCCCCC--eEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCC
Q 047544 3 GHHGGNHPVHNIQNGRV------EISAQNHNYAVDPATLPKG--VEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGP 74 (95)
Q Consensus 3 g~~g~n~pv~~~~~~~i------~~~s~~H~~~v~~~~l~~~--~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~ 74 (95)
+++|..+.|..... .+ ..+.++|++.++.. .++. +.+++.+.++++|||+++++.|+||||||||+..++
T Consensus 113 ~~hG~~~~v~~~~~-~lf~gl~~~~v~~~Hs~~v~~~-~~~~l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~~~s~ 190 (742)
T TIGR01823 113 PKHGQVYEMHTNDA-AIFCGLFSVKSTRYHSLYANPE-GIDTLLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPESCCSE 190 (742)
T ss_pred CCcCeEEEEEECCc-cccCCCCCCceeEEEEEEccCC-CCCcceEEEEEEcCCCCeEEEEEEcCCceEEEEeCcccCCCC
Confidence 45666555653221 11 23578999999753 3444 566666655679999999999999999999998666
Q ss_pred CChHHHHHHHHHHHHhhh
Q 047544 75 DDSDCVFRDFVELMKSVK 92 (95)
Q Consensus 75 ~~~~~if~~Fi~~~~~~~ 92 (95)
..+..||++|++++.+++
T Consensus 191 ~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 191 LGSGKLVSNFLKLAFINN 208 (742)
T ss_pred ccHHHHHHHHHHHHHHhh
Confidence 556789999999987653
No 39
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.48 E-value=2.4e-14 Score=111.98 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=67.2
Q ss_pred eEEEccccceeEEccCCCC----CCeEEEEEeCCCCeEEEEEeCCCCEE-EEeccCCCCCCCCChHHHHHHHHHHHHhhh
Q 047544 18 RVEISAQNHNYAVDPATLP----KGVEVTHINLNDGTCAGLAYPALNVM-SLQYHLEASPGPDDSDCVFRDFVELMKSVK 92 (95)
Q Consensus 18 ~i~~~s~~H~~~v~~~~l~----~~~~v~a~~~~dg~iEai~~~~~pi~-gvQfHPE~~~~~~~~~~if~~Fi~~~~~~~ 92 (95)
.....-++|+|+|+++++. .||.+++++++++.+|.+|.+++||| |+|||||+.+.|.+..++|..|++++.+++
T Consensus 451 ~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~ 530 (533)
T COG0504 451 DEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYK 530 (533)
T ss_pred CeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhh
Confidence 4444688999999987655 69999999876679999999999986 999999999889999999999999998776
Q ss_pred cc
Q 047544 93 YR 94 (95)
Q Consensus 93 ~~ 94 (95)
..
T Consensus 531 ~~ 532 (533)
T COG0504 531 KD 532 (533)
T ss_pred cc
Confidence 54
No 40
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.48 E-value=1.4e-13 Score=109.07 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=58.1
Q ss_pred CCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 16 NGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 16 ~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
+.++. ..++|++.|. .+|++++++|. .|+.|||+++.+.|+||||||||+..+ .++..||++|++.+..
T Consensus 124 ~~~~~-v~~~Hs~~v~--~lP~~l~vlA~--sd~~v~ai~~~~~~i~GVQFHPEs~~T-~~G~~il~NFl~~~~~ 192 (531)
T PRK09522 124 TNPLP-VARYHSLVGS--NIPAGLTINAH--FNGMVMAVRHDADRVCGFQFHPESILT-TQGARLLEQTLAWAQQ 192 (531)
T ss_pred CCCcE-EEEehheecc--cCCCCcEEEEe--cCCCEEEEEECCCCEEEEEecCccccC-cchHHHHHHHHHHHhh
Confidence 33444 4679999995 59999999996 489999999999999999999999864 4678899999998754
No 41
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.46 E-value=1.8e-13 Score=93.83 Aligned_cols=65 Identities=18% Similarity=0.362 Sum_probs=53.8
Q ss_pred CCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHH
Q 047544 16 NGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFV 85 (95)
Q Consensus 16 ~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi 85 (95)
+..+.+ .+.|++.|. .+|++++++|.+ +++.|||+++++.++||+|||||.... .++..||++|+
T Consensus 117 ~~~~~~-~~~H~~~v~--~l~~~~~~la~~-~~~~i~a~~~~~~~~~g~QfHPE~~~~-~~g~~ll~~f~ 181 (181)
T cd01742 117 PDEQTV-WMSHGDEVV--KLPEGFKVIASS-DNCPVAAIANEEKKIYGVQFHPEVTHT-EKGKEILKNFL 181 (181)
T ss_pred CCceEE-Ecchhhhhh--hcCCCcEEEEeC-CCCCEEEEEeCCCcEEEEEcCCccccC-cChHHHHHhhC
Confidence 334554 468999995 589999999996 589999999999899999999999853 46778999984
No 42
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.44 E-value=2.3e-13 Score=93.94 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=62.5
Q ss_pred CCCCcCCcceeecC-------CCeEEEccccceeEEcc-CCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCC
Q 047544 2 FGHHGGNHPVHNIQ-------NGRVEISAQNHNYAVDP-ATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPG 73 (95)
Q Consensus 2 ~g~~g~n~pv~~~~-------~~~i~~~s~~H~~~v~~-~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~ 73 (95)
.+++|.++++.... ........++|++.|.+ +.+|++++++|++.++..++|+.+.+.|++|+|||||....
T Consensus 99 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~ 178 (192)
T PF00117_consen 99 KPHHGGNIPISETPEDPLFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNPIYGVQFHPEFSSS 178 (192)
T ss_dssp EEEEEEEEEEEEEEEHGGGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTSEEEESSBTTSTTS
T ss_pred ccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccEEEEEecCCcCCCC
Confidence 45677777777621 22344457899999974 22789999999975444899999999999999999999865
Q ss_pred CCChHHHHHHHHH
Q 047544 74 PDDSDCVFRDFVE 86 (95)
Q Consensus 74 ~~~~~~if~~Fi~ 86 (95)
.. ...++++|+-
T Consensus 179 ~~-~~~~l~nf~~ 190 (192)
T PF00117_consen 179 PG-GPQLLKNFFL 190 (192)
T ss_dssp TT-HHHHHHHHHH
T ss_pred CC-cchhhhheeE
Confidence 54 4567777764
No 43
>PLN02347 GMP synthetase
Probab=99.39 E-value=1.9e-12 Score=102.90 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=54.1
Q ss_pred cccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 23 AQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 23 s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
.+.|++.|. .+|++|.++|++ +++.|+||++++.|+||||||||...+ ..+..||++|+..+..
T Consensus 141 ~~~Hsd~V~--~lP~g~~vlA~s-~~~~iaai~~~~~~i~GvQFHPE~~~t-~~G~~iL~NFl~~ic~ 204 (536)
T PLN02347 141 WMSHGDEAV--KLPEGFEVVAKS-VQGAVVAIENRERRIYGLQYHPEVTHS-PKGMETLRHFLFDVCG 204 (536)
T ss_pred EEEEEEEee--eCCCCCEEEEEe-CCCcEEEEEECCCCEEEEEccCCCCcc-chHHHHHHHHHHHHhC
Confidence 457999995 599999999997 689999999999999999999999743 4567899999865543
No 44
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.36 E-value=3e-12 Score=101.07 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=55.7
Q ss_pred CCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHH
Q 047544 16 NGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELM 88 (95)
Q Consensus 16 ~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~ 88 (95)
+....+ .+.|++.|. .+|++++++|.+ +++.++|+++.+.++||||||||... ...+..||++|+..+
T Consensus 122 ~~~~~v-~~~H~d~V~--~lp~g~~vlA~s-~~~~v~ai~~~~~~i~GvQFHPE~~~-t~~G~~il~nFl~~i 189 (511)
T PRK00074 122 PEEQDV-WMSHGDKVT--ELPEGFKVIAST-ENCPIAAIANEERKFYGVQFHPEVTH-TPQGKKLLENFVFDI 189 (511)
T ss_pred CCceEE-EEECCeEEE--ecCCCcEEEEEe-CCCCEEEEEeCCCCEEEEeCCCCcCC-chhHHHHHHHHHHHh
Confidence 344444 447899995 499999999997 68999999999999999999999984 345779999999544
No 45
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.20 E-value=8.4e-11 Score=82.58 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=47.0
Q ss_pred ccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHH
Q 047544 24 QNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMK 89 (95)
Q Consensus 24 ~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~ 89 (95)
.+|++.+. +++++.++|.+.++..++++.. ..++||||||||+.. ..+..||++|++.|+
T Consensus 144 ~~Hs~~v~---~~~~~~v~a~~~~~~~~~a~~~-~~~i~GvQfHPE~~~--~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 144 FVHSYYAD---PCDEEYVAATTDYGVEFPAAVG-KDNVFGAQFHPEKSG--DVGLKILKNFVEMVE 203 (205)
T ss_pred EECeeEec---cCCcCeEEEEEeCCcEEEEEEe-cCCEEEEeCCCccch--HHHHHHHHHHHHHhh
Confidence 57888884 6778899998643337888865 568999999999963 357789999999874
No 46
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.14 E-value=2.2e-10 Score=81.59 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=48.0
Q ss_pred cceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 9 HPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 9 ~pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
+++..-.+....+ .++|++.+.+.. +..+..++....++.++|++. .+++|||||||.. ...+..|+++|++.
T Consensus 137 ~~lf~~l~~~~~v-~~~HS~~v~p~~-~~~l~~t~~~~~~~~v~a~~~--~~i~GvQFHPE~s--~~~G~~il~nfl~~ 209 (210)
T CHL00188 137 WVNWKAWPLNPWA-YFVHSYGVMPKS-QACATTTTFYGKQQMVAAIEY--DNIFAMQFHPEKS--GEFGLWLLREFMKK 209 (210)
T ss_pred ChhhcCCCCCCEE-EEeCccEecCCC-CceEEEEEecCCcceEEEEec--CCEEEEecCCccc--cHhHHHHHHHHHhh
Confidence 3444433344443 568999995321 233444443323678999995 4899999999986 34577899999874
No 47
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.14 E-value=7.9e-11 Score=86.72 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=51.9
Q ss_pred EccccceeEEccCCCC------CCeEEEEEeCCC-C--eEEEEEeCCCCEEEEeccCCCCCC---C-----CC------h
Q 047544 21 ISAQNHNYAVDPATLP------KGVEVTHINLND-G--TCAGLAYPALNVMSLQYHLEASPG---P-----DD------S 77 (95)
Q Consensus 21 ~~s~~H~~~v~~~~l~------~~~~v~a~~~~d-g--~iEai~~~~~pi~gvQfHPE~~~~---~-----~~------~ 77 (95)
.+.++|+|+|++++++ ..|.++|++.++ | .|+++++++.|+||||||||..+. + .. +
T Consensus 156 ~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~ 235 (273)
T cd01747 156 LTMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLT 235 (273)
T ss_pred HHHhhcccccCHhhcccccccccceEEEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHH
Confidence 5788999999766655 457899987542 4 379999999999999999997642 1 11 1
Q ss_pred HHHHHHHHHHHHhhhc
Q 047544 78 DCVFRDFVELMKSVKY 93 (95)
Q Consensus 78 ~~if~~Fi~~~~~~~~ 93 (95)
..+-..|++.+++..+
T Consensus 236 q~~a~ffv~e~r~n~~ 251 (273)
T cd01747 236 QYFANFFVNEARKSNN 251 (273)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 2355567777766543
No 48
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.09 E-value=1.1e-10 Score=80.63 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=46.0
Q ss_pred eEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHH
Q 047544 18 RVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFV 85 (95)
Q Consensus 18 ~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi 85 (95)
.+. ..+.|++.|. .+|++++++|.+ +++.|+|++.+ .+++|+||||| ..||++|+
T Consensus 134 ~~~-v~~~H~~~v~--~lp~~~~~la~~-~~~~v~~~~~~-~~~~g~QfHPE--------~~~~~~f~ 188 (188)
T cd01741 134 EFP-VFHWHGDTVV--ELPPGAVLLASS-EACPNQAFRYG-DRALGLQFHPE--------ERLLRNFL 188 (188)
T ss_pred cce-EEEEeccChh--hCCCCCEEeecC-CCCCcceEEec-CCEEEEccCch--------HHHHhhhC
Confidence 344 4678999996 489999999985 68999999987 68999999999 56888874
No 49
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.09 E-value=6.4e-10 Score=77.73 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=48.6
Q ss_pred eEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 18 RVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 18 ~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
.+.+ .+.|++.|. .+|++++++|.+ |+.+++++. .++||+|||||.... ..||++|++.|++
T Consensus 128 ~~~~-~~~H~d~v~--~lp~~~~vlA~~--~~~~~~~~~--~~~~g~QfHPE~~~~----~~~~~~f~~~~~~ 189 (189)
T PRK13525 128 PFPA-VFIRAPYIE--EVGPGVEVLATV--GGRIVAVRQ--GNILATSFHPELTDD----TRVHRYFLEMVKE 189 (189)
T ss_pred CeEE-EEEeCceee--ccCCCcEEEEEc--CCEEEEEEe--CCEEEEEeCCccCCC----chHHHHHHHHhhC
Confidence 4443 567889995 499999999985 467788864 489999999999632 4799999999863
No 50
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.06 E-value=4.7e-10 Score=78.35 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=43.3
Q ss_pred cccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHH
Q 047544 23 AQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFV 85 (95)
Q Consensus 23 s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi 85 (95)
.++|++.+. +++.+.++|.+ +++..++..+...++||||||||.. ...+..++++|+
T Consensus 142 ~~~Hs~~v~---~~~~~~~la~s-~~~~~~~~~~~~~~i~GvQFHPE~~--~~~g~~~~~nf~ 198 (198)
T cd01748 142 YFVHSYYAP---PDDPDYILATT-DYGGKFPAAVEKDNIFGTQFHPEKS--GKAGLKLLKNFL 198 (198)
T ss_pred EEEeEEEEe---cCCcceEEEEe-cCCCeEEEEEEcCCEEEEECCCccc--cHhHHHHHHhhC
Confidence 568999995 44557788876 4555555556678999999999997 346778999984
No 51
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.03 E-value=8.8e-10 Score=77.44 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=44.1
Q ss_pred cccceeEEccCCCCCCeEEEEEeCCCCe-EEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHH
Q 047544 23 AQNHNYAVDPATLPKGVEVTHINLNDGT-CAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMK 89 (95)
Q Consensus 23 s~~H~~~v~~~~l~~~~~v~a~~~~dg~-iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~ 89 (95)
..+|++.+. +++++.++|++ +|+. ++++.. ..++||+|||||.. ...+..||++|++.++
T Consensus 139 ~~~Hs~~~~---~~~~~~~la~~-~~~~~~~~~~~-~~~~~gvQfHPE~~--~~~g~~i~~~f~~~~~ 199 (200)
T PRK13143 139 YFVHSYYAY---PDDEDYVVATT-DYGIEFPAAVC-NDNVFGTQFHPEKS--GETGLKILENFVELIK 199 (200)
T ss_pred EEEeeeeeC---CCCcceEEEEE-cCCCEEEEEEE-cCCEEEEeCCCccc--hHHHHHHHHHHHHHHh
Confidence 347888884 55678999986 5654 344444 45999999999996 2356789999998763
No 52
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.03 E-value=1.1e-09 Score=77.67 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=48.2
Q ss_pred ceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 10 PVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 10 pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
|+......... ..++|++.+.. ++ +..++|.+.....+.++.. ..++||||||||+. ...+..|+++|++.
T Consensus 137 ~lf~~~~~~~~-v~~~Hs~~v~~--~~-~~~~la~s~~~~~~~a~~~-~~~i~GvQFHPE~s--~~~G~~ll~nfl~~ 207 (209)
T PRK13146 137 PLFAGIPDGAR-FYFVHSYYAQP--AN-PADVVAWTDYGGPFTAAVA-RDNLFATQFHPEKS--QDAGLALLRNFLAW 207 (209)
T ss_pred hhccCCCCCCE-EEEEeEEEEEc--CC-CCcEEEEEcCCCEEEEEEe-cCCEEEEEcCCccc--HHHHHHHHHHHHhh
Confidence 34333333333 35789999963 33 4578887643335677654 57899999999986 34577899999876
No 53
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.03 E-value=1.2e-09 Score=77.75 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=44.7
Q ss_pred ccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 22 SAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
..++|+|.+. .+..+.+++.+..++.++.....+.++||+|||||... + .+..|+++|++.
T Consensus 149 v~~~HS~~~~---~~~~l~~sa~~~~~g~~~~a~~~~~~i~GvQFHPE~s~-~-~G~~iL~nfl~~ 209 (210)
T PRK14004 149 FYFIHSYRPT---GAEGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSH-T-HGLKLLENFIEF 209 (210)
T ss_pred EEEeceeecC---CCCcceEEEeeeECCEEEEEEEecCCEEEEeCCcccCc-h-hHHHHHHHHHhh
Confidence 3678998763 23456777876544665544456789999999999874 3 678899999875
No 54
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.97 E-value=2.3e-09 Score=75.08 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=39.7
Q ss_pred cccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 23 AQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 23 s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
.++|++.+.. + +.+.++|++. ++...+......++||||||||.. ...+..||++|++
T Consensus 141 ~~~Hs~~v~~--~-~~~~~lA~s~-~~~~~~~~~~~~~i~GvQFHPE~~--~~~g~~ll~nfl~ 198 (199)
T PRK13181 141 YFVHSYYVPC--E-DPEDVLATTE-YGVPFCSAVAKDNIYAVQFHPEKS--GKAGLKLLKNFAE 198 (199)
T ss_pred EEeCeeEecc--C-CcccEEEEEc-CCCEEEEEEECCCEEEEECCCccC--CHHHHHHHHHHHh
Confidence 4678888842 3 3356788864 444433333356799999999986 3457789999986
No 55
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.97 E-value=2.1e-09 Score=75.39 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=45.1
Q ss_pred cccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHH
Q 047544 23 AQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMK 89 (95)
Q Consensus 23 s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~ 89 (95)
.++|++.|. .+|++++++|.+ +|+ ++|++. .++||+|||||... + ..||++|++.+.
T Consensus 142 ~~~H~~~v~--~lp~~~~~la~~-~~~-~~a~~~--~~~~g~QfHPE~~~--~--~~l~~~f~~~~~ 198 (200)
T PRK13527 142 VFIRAPAIT--KVGGDVEVLAKL-DDR-IVAVEQ--GNVLATAFHPELTD--D--TRIHEYFLKKVK 198 (200)
T ss_pred EEEcccccc--ccCCCeEEEEEE-CCE-EEEEEE--CCEEEEEeCCCCCC--C--CHHHHHHHHHHh
Confidence 457888885 599999999986 455 568863 57999999999753 2 579999999874
No 56
>PRK09065 glutamine amidotransferase; Provisional
Probab=98.95 E-value=1.9e-09 Score=77.77 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=41.3
Q ss_pred CCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCC
Q 047544 16 NGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEAS 71 (95)
Q Consensus 16 ~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~ 71 (95)
+..+.+ .+.|++.|. +||++++++|.+ +++.|+|+++.+ ++||||||||..
T Consensus 139 ~~~~~v-~~~H~d~v~--~lp~~~~~la~s-~~~~iqa~~~~~-~i~gvQfHPE~~ 189 (237)
T PRK09065 139 PAQFPA-HLTHLQSVL--RLPPGAVVLARS-AQDPHQAFRYGP-HAWGVQFHPEFT 189 (237)
T ss_pred CccCcE-eeehhhhhh--hCCCCCEEEEcC-CCCCeeEEEeCC-CEEEEEeCCcCC
Confidence 344444 567888885 599999999985 578899999976 699999999975
No 57
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=98.94 E-value=3.2e-09 Score=74.41 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=43.2
Q ss_pred ccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 22 SAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
+.++|++.+.. .+ +. ++|.+ +++...+......++||+|||||+. +..+..|+++|++
T Consensus 138 v~~~Hs~~v~~--~~-~~-~~a~~-~~g~~~~~~~~~~~i~GvQFHPE~~--~~~g~~ll~~f~~ 195 (196)
T TIGR01855 138 FYFVHSYYAVC--EE-EA-VLAYA-DYGEKFPAAVQKGNIFGTQFHPEKS--GKTGLKLLENFLE 195 (196)
T ss_pred EEEECeeEecC--CC-Cc-EEEEE-cCCcEEEEEEecCCEEEEECCCccC--cHhHHHHHHHHHh
Confidence 35689999963 22 43 56654 4667766667788899999999986 3467889999986
No 58
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.89 E-value=5.7e-09 Score=73.30 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=39.0
Q ss_pred cccceeEEccCCCCCCeEEEEEeCCCC--eEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 23 AQNHNYAVDPATLPKGVEVTHINLNDG--TCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 23 s~~H~~~v~~~~l~~~~~v~a~~~~dg--~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
.+.|++.+.. ++ +.++|++ .++ .+++++ ..+++|||||||.. . ..+..||++|++
T Consensus 144 ~~vHS~~v~~--~~--~~v~a~~-~~g~~~~~a~~--~~~i~GvQFHPE~~-~-~~g~~ll~~Fl~ 200 (201)
T PRK13152 144 YFVHSFYVKC--KD--EFVSAKA-QYGHKFVASLQ--KDNIFATQFHPEKS-Q-NLGLKLLENFAR 200 (201)
T ss_pred EEEcccEeec--CC--CcEEEEE-CCCCEEEEEEe--cCCEEEEeCCCeec-C-hhhHHHHHHHHh
Confidence 4467777742 22 4677776 455 566776 45899999999987 2 356789999986
No 59
>PRK07567 glutamine amidotransferase; Provisional
Probab=98.83 E-value=6.7e-09 Score=75.23 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=44.4
Q ss_pred cceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCC
Q 047544 9 HPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEAS 71 (95)
Q Consensus 9 ~pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~ 71 (95)
+|+....+..+.+ .+.|++.|. +||++++++|.+ +++.++|+++.+ +++|||||||..
T Consensus 136 ~~l~~~~~~~~~~-~~~H~d~V~--~lp~~~~vlA~s-~~~~vqa~~~~~-~~~gvQfHPE~~ 193 (242)
T PRK07567 136 DPLLAGLPDTFTA-FVGHKEAVS--ALPPGAVLLATS-PTCPVQMFRVGE-NVYATQFHPELD 193 (242)
T ss_pred ChhhcCCCCceEE-Eeehhhhhh--hCCCCCEEEEeC-CCCCEEEEEeCC-CEEEEEeCCcCC
Confidence 3444333444443 567999995 599999999985 688999999864 699999999986
No 60
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.83 E-value=1.4e-08 Score=71.34 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=42.1
Q ss_pred ccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 22 SAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
..++|+|++. .+..++|.+ +.+...+......++||+|||||... ..+..|+++|++
T Consensus 139 v~~~Hs~~lp-----~~~~~la~s-~~~~~~~~~~~~~~i~G~QFHPE~~~--~~G~~~l~nfl~ 195 (196)
T PRK13170 139 FYFVHSYAMP-----VNEYTIAQC-NYGEPFSAAIQKDNFFGVQFHPERSG--AAGAQLLKNFLE 195 (196)
T ss_pred EEEECeeecC-----CCCcEEEEe-cCCCeEEEEEEcCCEEEEECCCCCcc--cccHHHHHHHhh
Confidence 4678888763 344577875 45666666666778999999999973 457789999985
No 61
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.81 E-value=8.5e-09 Score=71.96 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=38.7
Q ss_pred ceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 26 HNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 26 H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
|...|. .+|++++++|++ |+.++|++.. +++|+|||||... + ..+++.|++
T Consensus 134 h~~~v~--~lp~~~~vla~~--~~~~~a~~~~--~~~gvQfHPE~~~---~-~~~~~~f~~ 184 (184)
T TIGR03800 134 RAPKIV--SVGNGVEILAKV--GNRIVAVRQG--NILVSSFHPELTD---D-HRVHEYFLE 184 (184)
T ss_pred cCCCcc--cCCCCeEEEEEe--CCeeEEEEeC--CEEEEEeCCccCC---C-chHHHHhhC
Confidence 334443 489999999984 5688999644 6999999999862 2 269999973
No 62
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=7.5e-09 Score=82.55 Aligned_cols=65 Identities=18% Similarity=0.367 Sum_probs=51.5
Q ss_pred ccccceeEEccCCCCCC-eEEEEEeCCCC--eEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHH
Q 047544 22 SAQNHNYAVDPATLPKG-VEVTHINLNDG--TCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMK 89 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~~~-~~v~a~~~~dg--~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~ 89 (95)
..+||+..|++ +|-+ +.+.+...+|+ ++|++.++..|+||+|||||+.. +..+..||++|++..-
T Consensus 151 ~~RYHSL~in~--~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~-s~~g~~lfkNFl~lt~ 218 (767)
T KOG1224|consen 151 VVRYHSLIINS--LPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIA-STYGSQLFKNFLDLTV 218 (767)
T ss_pred eEEeEEEEecC--CchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHhh-hhhhHHHHHHHHHhhc
Confidence 47899999974 7754 55555544566 78999999999999999999985 4445689999999864
No 63
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.78 E-value=4.2e-08 Score=78.34 Aligned_cols=61 Identities=25% Similarity=0.221 Sum_probs=43.1
Q ss_pred ccceeEEccCCCC-CCeEEEEEeC-CCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 24 QNHNYAVDPATLP-KGVEVTHINL-NDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 24 ~~H~~~v~~~~l~-~~~~v~a~~~-~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
+.|+|.+.. ++ ....+++.+. +++.|+|+++. +++|+|||||... ..+..||++|++.+.+
T Consensus 150 ~vHSy~v~~--~p~~~~~v~a~~~~g~~~IaAI~~g--nI~GVQFHPE~s~--~~G~~L~~nFl~~~~~ 212 (538)
T PLN02617 150 FVHSYRATP--SDENKDWVLATCNYGGEFIASVRKG--NVHAVQFHPEKSG--ATGLSILRRFLEPKSS 212 (538)
T ss_pred EEeEEEEEe--cCCCCcEEEEEEccCCCcEEEEEeC--CEEEEEcCCccCc--hhHHHHHHHHHHhhhh
Confidence 357887743 33 2334445443 35689999974 8999999999973 3567899999988764
No 64
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.77 E-value=4.7e-09 Score=74.37 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=51.0
Q ss_pred ccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 22 SAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
+.+.|+-.|. .||+|++++|.+ +..-++||++. .++||||||||... ..+..++++|...
T Consensus 133 v~~sH~D~v~--~lP~g~~vlA~s-~~cp~qa~~~~-~~~~gvQFHpEv~~--~~~~~~l~nf~~~ 192 (198)
T COG0518 133 VFMSHGDTVV--ELPEGAVVLASS-ETCPNQAFRYG-KRAYGVQFHPEVTH--EYGEALLENFAHE 192 (198)
T ss_pred cccchhCccc--cCCCCCEEEecC-CCChhhheecC-CcEEEEeeeeEEeH--HHHHHHHHHhhhh
Confidence 5678999995 499999999985 67789999999 99999999999973 4567899999954
No 65
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.71 E-value=7.5e-09 Score=81.01 Aligned_cols=68 Identities=18% Similarity=0.324 Sum_probs=54.2
Q ss_pred ccccceeEEccCCCC----CCeEEEEEeCCCCeEEEEEeCCCCEE-EEeccCCCCCCCCChHHHHHHHHHHHH
Q 047544 22 SAQNHNYAVDPATLP----KGVEVTHINLNDGTCAGLAYPALNVM-SLQYHLEASPGPDDSDCVFRDFVELMK 89 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~----~~~~v~a~~~~dg~iEai~~~~~pi~-gvQfHPE~~~~~~~~~~if~~Fi~~~~ 89 (95)
.-++|+|+|+++.++ .||..++.+......|-++.+++|+| |+|||||+.+.|.+..++|-..+.+..
T Consensus 476 ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~ 548 (585)
T KOG2387|consen 476 ERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASC 548 (585)
T ss_pred hhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCCCCcchhHhHHHHH
Confidence 467899999986554 69999999754447889999999986 999999999877776677766666543
No 66
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.64 E-value=1.3e-08 Score=73.00 Aligned_cols=69 Identities=29% Similarity=0.354 Sum_probs=47.7
Q ss_pred EEEccccceeEEccCCC---CCCeEEEEEe------------CC--CCeEEEEEeCCCCEEEEeccCCCCC----CCCCh
Q 047544 19 VEISAQNHNYAVDPATL---PKGVEVTHIN------------LN--DGTCAGLAYPALNVMSLQYHLEASP----GPDDS 77 (95)
Q Consensus 19 i~~~s~~H~~~v~~~~l---~~~~~v~a~~------------~~--dg~iEai~~~~~pi~gvQfHPE~~~----~~~~~ 77 (95)
+.|+...+.|.++++.+ .+...+.+.. ++ ...|+||.+++.+++|+|||||+.. .+.++
T Consensus 137 ~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g 216 (227)
T TIGR01737 137 IPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDG 216 (227)
T ss_pred EEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccccCCccc
Confidence 34466667777765433 2333433332 22 1479999999999999999999983 35577
Q ss_pred HHHHHHHHHH
Q 047544 78 DCVFRDFVEL 87 (95)
Q Consensus 78 ~~if~~Fi~~ 87 (95)
..||++|++.
T Consensus 217 ~~~~~~~~~~ 226 (227)
T TIGR01737 217 LKLFESLVEW 226 (227)
T ss_pred HHHHHHHHhh
Confidence 8999999864
No 67
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.64 E-value=3.9e-08 Score=70.24 Aligned_cols=67 Identities=28% Similarity=0.396 Sum_probs=48.4
Q ss_pred EEEccccceeEEccCCCC----CCeEEEEE---eCCCC---eEEEEEeCCCCEEEEeccCCCCCCC----CChHHHHHHH
Q 047544 19 VEISAQNHNYAVDPATLP----KGVEVTHI---NLNDG---TCAGLAYPALNVMSLQYHLEASPGP----DDSDCVFRDF 84 (95)
Q Consensus 19 i~~~s~~H~~~v~~~~l~----~~~~v~a~---~~~dg---~iEai~~~~~pi~gvQfHPE~~~~~----~~~~~if~~F 84 (95)
+.++.+.|+|.++++++. .++.+... ++ +| .|.++.+++..++|+|||||+...+ .++.+||++|
T Consensus 138 ~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~np-ngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~ 216 (219)
T PRK03619 138 IPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENP-NGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESL 216 (219)
T ss_pred EEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCC-CCCHHHhcccCCCCCCEEEEeCCCCccccCccCCCcCHHHHHHH
Confidence 345888899999764432 56665444 33 45 3667776666789999999998654 5778999999
Q ss_pred HH
Q 047544 85 VE 86 (95)
Q Consensus 85 i~ 86 (95)
++
T Consensus 217 v~ 218 (219)
T PRK03619 217 LK 218 (219)
T ss_pred hh
Confidence 85
No 68
>PRK06490 glutamine amidotransferase; Provisional
Probab=98.63 E-value=9.1e-08 Score=69.24 Aligned_cols=43 Identities=28% Similarity=0.423 Sum_probs=36.6
Q ss_pred ccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCC
Q 047544 24 QNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEAS 71 (95)
Q Consensus 24 ~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~ 71 (95)
+.|++.+ +||+++.++|.+ +++.++||++.+ ++||+|||||..
T Consensus 140 ~~H~d~~---~lP~~~~~LA~s-~~~~~qa~~~~~-~v~g~QfHPE~~ 182 (239)
T PRK06490 140 HWHREGF---DLPAGAELLATG-DDFPNQAFRYGD-NAWGLQFHPEVT 182 (239)
T ss_pred EECCccc---cCCCCCEEEEeC-CCCCeEEEEeCC-CEEEEeeCccCC
Confidence 3577774 599999999986 689999999965 799999999986
No 69
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.51 E-value=1.9e-07 Score=64.78 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=39.5
Q ss_pred ccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHH
Q 047544 24 QNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFV 85 (95)
Q Consensus 24 ~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi 85 (95)
..|...|. .+|++++++|.+ |+.++|++.. +++|+|||||... + ..++++|+
T Consensus 132 ~~h~~~v~--~~p~~~~~la~~--~~~~~a~~~~--~~~g~qfHPE~~~---~-~~~~~~f~ 183 (183)
T cd01749 132 FIRAPVIE--EVGPGVEVLAEY--DGKIVAVRQG--NVLATSFHPELTD---D-TRIHEYFL 183 (183)
T ss_pred EEECcEEE--EcCCCcEEEEec--CCEEEEEEEC--CEEEEEcCCccCC---C-cchhhhhC
Confidence 34667775 489999999974 5677788754 6999999999863 2 26888874
No 70
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.49 E-value=4.9e-07 Score=65.19 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=42.3
Q ss_pred cceeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCC
Q 047544 9 HPVHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEAS 71 (95)
Q Consensus 9 ~pv~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~ 71 (95)
.|+....+.++.+ .+.|+..+ .||++++++|.+ +...++|++..+ ++||+|||||..
T Consensus 127 d~l~~~~~~~~~v-~~~H~d~~---~lP~~a~~LA~s-~~~~~qa~~~~~-~~~g~QfHPE~~ 183 (235)
T PRK08250 127 DPLLSHFGSTLTV-GHWHNDMP---GLTDQAKVLATS-EGCPRQIVQYSN-LVYGFQCHMEFT 183 (235)
T ss_pred CchhhcCCCCcEE-EEEeccee---cCCCCCEEEECC-CCCCceEEEeCC-CEEEEeecCcCC
Confidence 3444333445554 56788776 499999999985 677899998754 599999999975
No 71
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=98.48 E-value=8.6e-07 Score=63.14 Aligned_cols=71 Identities=21% Similarity=0.255 Sum_probs=44.8
Q ss_pred cceeecCCC--eEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 9 HPVHNIQNG--RVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 9 ~pv~~~~~~--~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
||+...... ..|. -|+|.+.+ .+.-.+++.+...+..-|...++ .++|+|||||... .-+..|+++|++
T Consensus 131 ~~l~~gi~~~~~~YF---VHSY~~~~---~~~~~v~~~~~YG~~f~AaV~k~-N~~g~QFHPEKSg--~~Gl~lL~NFl~ 201 (204)
T COG0118 131 HPLFKGIPDGAYFYF---VHSYYVPP---GNPETVVATTDYGEPFPAAVAKD-NVFGTQFHPEKSG--KAGLKLLKNFLE 201 (204)
T ss_pred ChhhcCCCCCCEEEE---EEEEeecC---CCCceEEEeccCCCeeEEEEEeC-CEEEEecCcccch--HHHHHHHHHHHh
Confidence 666665433 5555 47788863 12223444433343455555555 8999999999963 235689999998
Q ss_pred HH
Q 047544 87 LM 88 (95)
Q Consensus 87 ~~ 88 (95)
.+
T Consensus 202 ~~ 203 (204)
T COG0118 202 WI 203 (204)
T ss_pred hc
Confidence 74
No 72
>PRK05665 amidotransferase; Provisional
Probab=98.40 E-value=9.4e-07 Score=64.10 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=40.8
Q ss_pred CeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCC
Q 047544 17 GRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASP 72 (95)
Q Consensus 17 ~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~ 72 (95)
..+.+ .+.|+..|. .||+|+.++|.+ +++.++|++.. .++||+|||||...
T Consensus 140 ~~~~~-~~~H~D~V~--~LP~ga~~La~s-~~~~~q~~~~~-~~~~g~QfHPE~~~ 190 (240)
T PRK05665 140 TELTL-LISHQDQVT--ALPEGATVIASS-DFCPFAAYHIG-DQVLCFQGHPEFVH 190 (240)
T ss_pred CceEE-EEEcCCeee--eCCCCcEEEEeC-CCCcEEEEEeC-CCEEEEecCCcCcH
Confidence 34443 467889985 599999999985 68889999864 57999999999863
No 73
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.28 E-value=1.7e-06 Score=62.49 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=37.5
Q ss_pred ccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCC
Q 047544 22 SAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEAS 71 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~ 71 (95)
..+.|+..++ ||++.+++|.+ ++..++|++.. .++||+|||||..
T Consensus 137 ~~~~H~d~~~---lP~ga~~La~s-~~~~~qaf~~g-~~~~g~QfHpE~~ 181 (234)
T PRK07053 137 VLHWHGDTFD---LPEGATLLAST-PACRHQAFAWG-NHVLALQFHPEAR 181 (234)
T ss_pred EEEEeCCEEe---cCCCCEEEEcC-CCCCeeEEEeC-CCEEEEeeCccCC
Confidence 3567888884 99999999985 57789999874 5799999999986
No 74
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.28 E-value=7.2e-07 Score=70.09 Aligned_cols=61 Identities=20% Similarity=0.472 Sum_probs=49.6
Q ss_pred ccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHH-HHH
Q 047544 24 QNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFV-ELM 88 (95)
Q Consensus 24 ~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi-~~~ 88 (95)
.-|+-.+. .++.+|++.|++ ....+-+|.+..+++||+|||||....+. ++.++++|+ +.|
T Consensus 144 ltHgdsl~--~v~~g~kv~a~s-~n~~va~i~~e~kkiyglqfhpEV~~t~~-g~~ll~nFl~~vc 205 (552)
T KOG1622|consen 144 LTHGDSLS--KVPEGFKVVAFS-GNKPVAGILNELKKIYGLQFHPEVTLTPN-GKELLKNFLFDVC 205 (552)
T ss_pred eccccchh--hccccceeEEee-cCcceeeehhhhhhhhcCCCCCcccccCc-hhHHHHHHHHHHc
Confidence 35788885 499999999996 34458899999999999999999986554 568999999 444
No 75
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.95 E-value=3.7e-05 Score=54.33 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=35.3
Q ss_pred ccceeEEccCCCCCCeEEEEEeCCCC-eEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHH
Q 047544 24 QNHNYAVDPATLPKGVEVTHINLNDG-TCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVEL 87 (95)
Q Consensus 24 ~~H~~~v~~~~l~~~~~v~a~~~~dg-~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~ 87 (95)
.-|+|.+. .++...+++ ..++ .+-++ ...+++|+|||||.. + ..+..|+++|++-
T Consensus 132 FVhSy~v~---~~~~v~~~~--~yg~~~~~~v--~~~n~~g~QFHPEkS-~-~~G~~ll~nf~~~ 187 (192)
T PRK13142 132 FVHSYQAP---MSENVIAYA--QYGADIPAIV--QFNNYIGIQFHPEKS-G-TYGLQILRQAIQG 187 (192)
T ss_pred EECCCeEC---CCCCEEEEE--ECCCeEEEEE--EcCCEEEEecCcccC-c-HhHHHHHHHHHhc
Confidence 35778883 234444444 3344 34444 356899999999995 3 4567899999763
No 76
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=97.87 E-value=9.5e-06 Score=59.95 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=36.9
Q ss_pred ccccceeEEccCCCC------CCeEEEEEeCCCC---eEEEEEeCCCCEEEEeccCCCCC
Q 047544 22 SAQNHNYAVDPATLP------KGVEVTHINLNDG---TCAGLAYPALNVMSLQYHLEASP 72 (95)
Q Consensus 22 ~s~~H~~~v~~~~l~------~~~~v~a~~~~dg---~iEai~~~~~pi~gvQfHPE~~~ 72 (95)
++++|.|.|.++... .=|.++-.+.+++ .|-.++.+.+|+.|+|||||..+
T Consensus 213 vmq~Hk~gisp~nF~~N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKna 272 (340)
T KOG1559|consen 213 VMQNHKFGISPKNFQGNPALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNA 272 (340)
T ss_pred eeeccccccchhhccCCHHHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccCc
Confidence 588999999765433 2255665555443 36688999999999999999754
No 77
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=97.52 E-value=0.00038 Score=52.34 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=49.9
Q ss_pred CcceeecCCCeEEEccccceeEEccC--CCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHH
Q 047544 8 NHPVHNIQNGRVEISAQNHNYAVDPA--TLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFV 85 (95)
Q Consensus 8 n~pv~~~~~~~i~~~s~~H~~~v~~~--~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi 85 (95)
++|+.....+...+-.++| ..|..+ .++++++++|.+ ++.-+.++..++..+++||+|||+.. .-+-+.+.
T Consensus 176 ~~pL~~g~~d~F~~phSr~-~~V~~~~i~~~~~l~vLA~S-~~~gv~~~~~~~~r~~~vQgHPEYd~-----~tL~~EY~ 248 (302)
T PRK05368 176 HHPLLRGFDDSFLVPHSRY-TEVREEDIRAATGLEILAES-EEAGVYLFASKDKREVFVTGHPEYDA-----DTLAQEYF 248 (302)
T ss_pred CChhhcCCCCccccceeeh-hhccHHHhccCCCCEEEecC-CCCCeEEEEeCCCCEEEEECCCCCCH-----HHHHHHHH
Confidence 4566655555666544444 556432 267899999986 56778888888888999999999963 33444444
Q ss_pred HHH
Q 047544 86 ELM 88 (95)
Q Consensus 86 ~~~ 88 (95)
..+
T Consensus 249 RD~ 251 (302)
T PRK05368 249 RDL 251 (302)
T ss_pred HHH
Confidence 443
No 78
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=97.30 E-value=0.0015 Score=47.87 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=27.1
Q ss_pred CeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 49 GTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 49 g~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
+.+-|++. .+++|+|||||... +. .|+++|++++..
T Consensus 181 ~~~~aV~q--gnvlatqFHPEls~---d~-rih~~Fl~~~~~ 216 (248)
T PLN02832 181 KVIVAVKQ--GNLLATAFHPELTA---DT-RWHSYFVKMVSE 216 (248)
T ss_pred ceEEEEEe--CCEEEEEccCccCC---cc-HHHHHHHHHHHH
Confidence 45666653 47899999999963 23 799999998864
No 79
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=94.53 E-value=0.043 Score=40.43 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=32.7
Q ss_pred eEEEEEeCCCCEEEEeccCCCCCCCC------------ChHHHHHHHHHHHH
Q 047544 50 TCAGLAYPALNVMSLQYHLEASPGPD------------DSDCVFRDFVELMK 89 (95)
Q Consensus 50 ~iEai~~~~~pi~gvQfHPE~~~~~~------------~~~~if~~Fi~~~~ 89 (95)
.|.||-+++..++|.+-||||...+. ++..||+++++..+
T Consensus 207 ~IAGi~~~~G~vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~~ 258 (261)
T PRK01175 207 NIAGITNEKGNVIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYLR 258 (261)
T ss_pred hcceeECCCCCEEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHHH
Confidence 48899999999999999999975322 77899999987553
No 80
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=91.50 E-value=0.58 Score=33.20 Aligned_cols=46 Identities=28% Similarity=0.463 Sum_probs=32.5
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHH
Q 047544 37 KGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMK 89 (95)
Q Consensus 37 ~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~ 89 (95)
++..+.|.. +|.|=|.+ ..++++.=||||-. +|...+-++|++.+.
T Consensus 142 ~~v~vla~~--~g~iVav~--qgn~latsFHPELT---~D~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 142 EGVEVLAEL--DGKIVAVR--QGNILATSFHPELT---DDDTRIHEYFLEMVV 187 (188)
T ss_dssp TTEEEEEEE--TTEEEEEE--ETTEEEESS-GGGS---STHCHHHHHHHHHHC
T ss_pred ccccccccc--ccceEEEE--ecCEEEEEeCCccc---CchhHHHHHHHHHhh
Confidence 577888864 45666666 34789999999985 232369999999874
No 81
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=91.26 E-value=0.92 Score=32.30 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=32.8
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 35 LPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 35 l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
++++.+++|+ . |+.|-|.+.. +++|.-||||-.. |. .+-++|++.+..
T Consensus 145 vg~~V~vLa~-l-~~~iVav~qg--n~LatsFHPELT~---D~-r~Heyf~~~v~~ 192 (194)
T COG0311 145 VGDGVEVLAT-L-DGRIVAVKQG--NILATSFHPELTD---DT-RLHEYFLDMVLG 192 (194)
T ss_pred hcCcceEeee-e-CCEEEEEEeC--CEEEEecCccccC---Cc-cHHHHHHHHhhc
Confidence 4456777776 3 5566666543 8999999999852 23 577778777654
No 82
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=90.88 E-value=0.51 Score=34.33 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=34.7
Q ss_pred ccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCC
Q 047544 24 QNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEAS 71 (95)
Q Consensus 24 ~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~ 71 (95)
+-|+-.|- .+|++++.+|.+ ++..+|.+.-.+ .++++|=|||+.
T Consensus 152 kcHqDevl--e~PE~a~llasS-e~ceve~fs~~~-~~l~fQGHPEyn 195 (245)
T KOG3179|consen 152 KCHQDEVL--ELPEGAELLASS-EKCEVEMFSIED-HLLCFQGHPEYN 195 (245)
T ss_pred hhccccee--cCCchhhhhccc-cccceEEEEecc-eEEEecCCchhh
Confidence 34655554 499999999985 788999986554 578999999985
No 83
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=88.79 E-value=0.44 Score=37.30 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=36.6
Q ss_pred CCeEEEccccceeEEc--cCCCC-CCeEEEEEeCC--CCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 16 NGRVEISAQNHNYAVD--PATLP-KGVEVTHINLN--DGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 16 ~~~i~~~s~~H~~~v~--~~~l~-~~~~v~a~~~~--dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
..++|.+ |+|-.. +++++ ++|.+. .+.. +..|-||+ ...++++|||||.. +.- +..++++|+.
T Consensus 139 ~~~~YFV---HSyl~~ek~~~len~~wkia-t~kYG~E~Fi~ai~--knN~~AtQFHPEKS-G~a-GL~vl~~FL~ 206 (541)
T KOG0623|consen 139 NRHVYFV---HSYLNREKPKSLENKDWKIA-TCKYGSESFISAIR--KNNVHATQFHPEKS-GEA-GLSVLRRFLH 206 (541)
T ss_pred CceEEEE---eeecccccccCCCCCCceEe-eeccCcHHHHHHHh--cCceeeEecccccc-cch-hHHHHHHHHh
Confidence 4566654 455332 23455 468763 3221 22344543 34689999999986 332 4468899987
No 84
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=88.77 E-value=0.37 Score=34.69 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCEEEEeccCCCCCCC---------CChHHHHHHH
Q 047544 50 TCAGLAYPALNVMSLQYHLEASPGP---------DDSDCVFRDF 84 (95)
Q Consensus 50 ~iEai~~~~~pi~gvQfHPE~~~~~---------~~~~~if~~F 84 (95)
.|.||-+++.+++|.+-||||...+ .++..||++.
T Consensus 194 ~iAgi~~~~GrvlglMphPer~~~~~q~~~~~~~~~~~~~F~~~ 237 (238)
T cd01740 194 GIAGICNEDGRVLGMMPHPERAVEPWQWERLLGGSDGLKLFRNA 237 (238)
T ss_pred cceEEEcCCCCEEEEcCChHHcccccccccccCCCccHHHHhhc
Confidence 3889999999999999999997533 2456777753
No 85
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=88.30 E-value=2 Score=32.45 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=44.8
Q ss_pred CcceeecCCCeEEEccccceeEEccCCC--CCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHH
Q 047544 8 NHPVHNIQNGRVEISAQNHNYAVDPATL--PKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFV 85 (95)
Q Consensus 8 n~pv~~~~~~~i~~~s~~H~~~v~~~~l--~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi 85 (95)
++|+.....+...+=.++| -.|+.+.+ ..+|+++|.+. +.-+--+..++...+=+|-|||+... -|-+++.
T Consensus 175 ~~pLl~Gfdd~f~~PhSR~-t~i~~~~i~~~~~L~vLa~s~-~~G~~l~~~~d~r~vfi~GH~EYd~~-----TL~~EY~ 247 (298)
T PF04204_consen 175 DHPLLRGFDDTFFAPHSRY-TEIDRDDIKKAPGLEVLAESE-EAGVFLVASKDGRQVFITGHPEYDAD-----TLAKEYR 247 (298)
T ss_dssp S-GGGTT--SEEEEEEEEE-EE--HHHHCT-TTEEEEEEET-TTEEEEEEECCCTEEEE-S-TT--TT-----HHHHHHH
T ss_pred CChhhcCCCccccCCcccc-cCCCHHHHhcCCCcEEEeccC-CcceEEEEcCCCCEEEEeCCCccChh-----HHHHHHH
Confidence 3677777777888877777 56655555 47899999975 45556666777788889999999642 2445554
Q ss_pred HHHH
Q 047544 86 ELMK 89 (95)
Q Consensus 86 ~~~~ 89 (95)
..+.
T Consensus 248 RD~~ 251 (298)
T PF04204_consen 248 RDLA 251 (298)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 86
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=88.00 E-value=0.86 Score=33.30 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=31.7
Q ss_pred eEEEEEeCCCCEEEEeccCCCCC----CCCChHHHHHHHHHHH
Q 047544 50 TCAGLAYPALNVMSLQYHLEASP----GPDDSDCVFRDFVELM 88 (95)
Q Consensus 50 ~iEai~~~~~pi~gvQfHPE~~~----~~~~~~~if~~Fi~~~ 88 (95)
-|.+|-+.+..++|.+=||||.. +..|+..||+..++.+
T Consensus 188 ~IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~~ 230 (231)
T COG0047 188 GIAGITNEDGNVLGMMPHPERASESLLGGEDGLRLFRSARKYL 230 (231)
T ss_pred hceeEEcCCCCEEEecCCchhhhhcccCCchHHHHHHHHHHhh
Confidence 37888999999999999999974 2456778999887754
No 87
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=86.83 E-value=1.7 Score=32.07 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=28.7
Q ss_pred CeEEEEEeCCCCEEEEeccCCCCCC----C---------CChHHHHHHHHHHH
Q 047544 49 GTCAGLAYPALNVMSLQYHLEASPG----P---------DDSDCVFRDFVELM 88 (95)
Q Consensus 49 g~iEai~~~~~pi~gvQfHPE~~~~----~---------~~~~~if~~Fi~~~ 88 (95)
.-|+||-+.+..++|.+-|||+... + ..+..||++.++.+
T Consensus 207 ~~IAGics~~GrvlglMpHPEr~~~~~~~~~~p~~~~~~s~~~~~F~n~~~w~ 259 (259)
T PF13507_consen 207 NNIAGICSPDGRVLGLMPHPERAFEPWQWPHWPREKWQESPWLRIFQNAVEWF 259 (259)
T ss_dssp GGEEEEE-TTSSEEEESSBCCGTTCCCCSS-S--TT--B-TTHHHHHHHHH--
T ss_pred cceeEEEcCCCCEEEEcCChHHhCchhhcCCCCccccCCChHHHHHHHHhhcC
Confidence 3599999999999999999998742 2 23567888877653
No 88
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=82.10 E-value=4.8 Score=28.24 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHHHHHH
Q 047544 35 LPKGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFRDFVE 86 (95)
Q Consensus 35 l~~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~~Fi~ 86 (95)
++++.+++|.- ++.|-|++ ..+++|.=||||-. +|. .+-++|++
T Consensus 135 ~~~~v~vla~~--~~~~v~v~--q~~~l~~~FHPElt---~d~-r~h~~f~~ 178 (179)
T PRK13526 135 VGNQVDILSKY--QNSPVLLR--QANILVSSFHPELT---QDP-TVHEYFLA 178 (179)
T ss_pred cCCCcEEEEEE--CCEEEEEE--ECCEEEEEeCCccC---CCc-hHHHHHhc
Confidence 56788888873 45655654 34689999999985 233 57788875
No 89
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=70.19 E-value=6.4 Score=30.57 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCC
Q 047544 38 GVEVTHINLNDGTCAGLAYPALNVMSLQYHLEA 70 (95)
Q Consensus 38 ~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~ 70 (95)
++.+.-|+..+|.+---.--+.|+++.||||-.
T Consensus 86 D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k 118 (405)
T KOG1273|consen 86 DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRK 118 (405)
T ss_pred CceeEEEeccCCCceeEEEccCccceeeecccc
Confidence 455555665566533222235699999999953
No 90
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=65.60 E-value=6.4 Score=26.28 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=25.8
Q ss_pred CCCCeEEEEEeCCCC---------eEEEEEeCCCCEEEEeccCCCC
Q 047544 35 LPKGVEVTHINLNDG---------TCAGLAYPALNVMSLQYHLEAS 71 (95)
Q Consensus 35 l~~~~~v~a~~~~dg---------~iEai~~~~~pi~gvQfHPE~~ 71 (95)
|..|+++||+-+.|| +|+++...|.| ||.||-.+.
T Consensus 63 L~NG~~VtAyiPg~Gh~lqEH~~Vli~G~~v~DlP--GVRy~vvrg 106 (129)
T COG0048 63 LINGKEVTAYIPGEGHNLQEHSEVLIRGGRVKDLP--GVRYKVVRG 106 (129)
T ss_pred eeCCcEEEEEcCCCCccccccCEEEEecCccCCCC--CceEEEEEE
Confidence 447888998877776 36777766666 899987664
No 91
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=60.10 E-value=30 Score=26.29 Aligned_cols=63 Identities=8% Similarity=-0.080 Sum_probs=44.5
Q ss_pred CcceeecCCCeEEEccccceeEEccCCCC--CCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCC
Q 047544 8 NHPVHNIQNGRVEISAQNHNYAVDPATLP--KGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASP 72 (95)
Q Consensus 8 n~pv~~~~~~~i~~~s~~H~~~v~~~~l~--~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~ 72 (95)
+||+.-...+..++=.++|.. |+.+.+. .+|+++|.+. +.-+--+..++...+=++=|||+..
T Consensus 175 ~~pL~rGfdd~f~~PhSR~t~-i~~~~i~~~~~L~vla~s~-e~G~~l~~s~d~r~vfi~GH~EYd~ 239 (300)
T TIGR01001 175 DSLLLRGFDDFFLAPHSRYAD-FDAEDIDKVTDLEILAESD-EAGVYLAANKDERNIFVTGHPEYDA 239 (300)
T ss_pred CCccccCCCCccccCCCCCCC-CCHHHHhcCCCCeEEecCC-CcceEEEEcCCCCEEEEcCCCccCh
Confidence 357666667778887777744 6544443 5899999864 5556666677767666999999963
No 92
>PF14124 DUF4291: Domain of unknown function (DUF4291)
Probab=49.32 E-value=8.5 Score=27.18 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=9.6
Q ss_pred EEEeccCCCCCC
Q 047544 62 MSLQYHLEASPG 73 (95)
Q Consensus 62 ~gvQfHPE~~~~ 73 (95)
.=|||.||+.+.
T Consensus 109 VrvQWDPErd~~ 120 (181)
T PF14124_consen 109 VRVQWDPERDPR 120 (181)
T ss_pred eEEEECcccCCC
Confidence 358999999863
No 93
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=48.68 E-value=19 Score=32.32 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCEEEEeccCCCCCC-------CC----Ch--HHHHHHHHHHH
Q 047544 50 TCAGLAYPALNVMSLQYHLEASPG-------PD----DS--DCVFRDFVELM 88 (95)
Q Consensus 50 ~iEai~~~~~pi~gvQfHPE~~~~-------~~----~~--~~if~~Fi~~~ 88 (95)
-|+||-+++.+++|.+-||||... |. ++ ..+|++....+
T Consensus 1238 ~IaGi~s~dGrvlglMpHPEr~~~~~q~~~~p~~~~~~~PW~~~F~na~~w~ 1289 (1290)
T PRK05297 1238 GITGLTTADGRVTIMMPHPERVFRTVQNSWHPEEWGEDSPWMRMFRNARKWV 1289 (1290)
T ss_pred cceEeECCCCCEEEEcCChHHhcchhhcCcCCCcccCCCHHHHHHHHHHHHh
Confidence 477777777788888888887532 21 23 67888877654
No 94
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=42.66 E-value=19 Score=32.41 Aligned_cols=37 Identities=22% Similarity=0.106 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEeccCCCCCC-------C------CChHHHHHHHHHH
Q 047544 51 CAGLAYPALNVMSLQYHLEASPG-------P------DDSDCVFRDFVEL 87 (95)
Q Consensus 51 iEai~~~~~pi~gvQfHPE~~~~-------~------~~~~~if~~Fi~~ 87 (95)
|+||-+++.+++|.+-||||... | ..+..+|++....
T Consensus 1260 IaGi~s~dGrvl~~MpHPEr~~~~~q~~~~p~~~~~~~pw~~~F~na~~w 1309 (1310)
T TIGR01735 1260 IAGITSCDGRVTIMMPHPERVFRAWQNSWRPEDWDEDTPWLRLFRNARNW 1309 (1310)
T ss_pred ceEeECCCCCEEEEcCCHHHhhhHhhCCcCCCCCCCCCcHHHHHHHHHHh
Confidence 55555555556666666665321 1 1456788887654
No 95
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=41.55 E-value=31 Score=31.18 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=24.3
Q ss_pred EEEEEeCCCCEEEEeccCCCCCC-----------------CCChHHHHHHHHHHH
Q 047544 51 CAGLAYPALNVMSLQYHLEASPG-----------------PDDSDCVFRDFVELM 88 (95)
Q Consensus 51 iEai~~~~~pi~gvQfHPE~~~~-----------------~~~~~~if~~Fi~~~ 88 (95)
|+||-+++.+++|.+-||||... ...+..+|++....+
T Consensus 1252 IAGi~s~dGRvlgmMpHPER~~~~~q~~~~p~~~~~~~~~~spw~~~F~na~~w~ 1306 (1307)
T PLN03206 1252 IAALCSPDGRHLAMMPHPERCFLMWQFPWYPKEWGVDPAGPSPWLKMFQNAREWC 1306 (1307)
T ss_pred ceeeECCCCCEEEEcCCHHHhhhhhhCCCCCccccccCCCCCcHHHHHHHHHHHh
Confidence 66666666677777777776421 114567888887654
No 96
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=40.58 E-value=41 Score=30.32 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=29.0
Q ss_pred eEEEEEeCCCCEEEEeccCCCCCC----CC---ChHHHHHHHHH
Q 047544 50 TCAGLAYPALNVMSLQYHLEASPG----PD---DSDCVFRDFVE 86 (95)
Q Consensus 50 ~iEai~~~~~pi~gvQfHPE~~~~----~~---~~~~if~~Fi~ 86 (95)
-|+||-+++.+++|.+=||||... +. ++..||++.++
T Consensus 1194 ~IaGi~s~dGrvlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1194 AIEGITSPDGRIFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred hhhEeECCCCCEEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 488999999999999999999742 22 23678988774
No 97
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=39.14 E-value=1.1e+02 Score=21.93 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCEEEEeccCCCCCCCC-ChHHHHHHHHHH
Q 047544 50 TCAGLAYPALNVMSLQYHLEASPGPD-DSDCVFRDFVEL 87 (95)
Q Consensus 50 ~iEai~~~~~pi~gvQfHPE~~~~~~-~~~~if~~Fi~~ 87 (95)
.|-|.+. ..|+++.-||||-..... .-++..++|+-.
T Consensus 185 ~iVAa~Q-~~~iL~TSFHPELa~~D~R~HdW~ire~Vl~ 222 (226)
T KOG3210|consen 185 LIVAAKQ-KNNILATSFHPELAENDIRFHDWFIREFVLK 222 (226)
T ss_pred EEEEEec-cCCEeeeecChhhhcccchHHHHHHHHHhhh
Confidence 3444443 358999999999863221 234666766643
No 98
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=35.58 E-value=27 Score=23.77 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=18.0
Q ss_pred eccCCCCCCCCChHHHHHHHHHHHHhh
Q 047544 65 QYHLEASPGPDDSDCVFRDFVELMKSV 91 (95)
Q Consensus 65 QfHPE~~~~~~~~~~if~~Fi~~~~~~ 91 (95)
+||. .+ .++.++.+|+.|++.+++.
T Consensus 92 sF~~-a~-~~~~A~~ly~~fv~~l~~~ 116 (145)
T TIGR00256 92 SFSK-GA-SPDRAEELYEYFVELCREK 116 (145)
T ss_pred Cccc-cC-CHHHHHHHHHHHHHHHHhc
Confidence 5553 22 3566789999999999864
No 99
>PF04741 InvH: InvH outer membrane lipoprotein; InterPro: IPR006830 This family represents the Salmonella outer membrane lipoprotein InvH. The molecular function of this protein is unknown, but it is required for the localisation to outer membrane of InvG, which is involved in a type III secretion apparatus mediating host cell invasion [, ].; GO: 0009405 pathogenesis
Probab=34.21 E-value=10 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=20.8
Q ss_pred EeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 64 LQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 64 vQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
+|=|||++...++-..+|..|-+....
T Consensus 99 FqEHPeYm~s~e~EeqL~~EF~~Vl~~ 125 (147)
T PF04741_consen 99 FQEHPEYMRSKEDEEQLMAEFKQVLLE 125 (147)
T ss_pred HHHChHHHhhhHHHHHHHHHHHHHHcc
Confidence 455999986666667899999988754
No 100
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=33.59 E-value=29 Score=23.57 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=17.9
Q ss_pred eccCCCCCCCCChHHHHHHHHHHHHhh
Q 047544 65 QYHLEASPGPDDSDCVFRDFVELMKSV 91 (95)
Q Consensus 65 QfHPE~~~~~~~~~~if~~Fi~~~~~~ 91 (95)
+||. .+ .++.++.+|+.|++.++..
T Consensus 92 ~F~~-a~-~~e~A~~ly~~fv~~l~~~ 116 (145)
T cd00563 92 SFSA-AA-PPDKAEPLYESFVELLREK 116 (145)
T ss_pred Cccc-cC-CHHHHHHHHHHHHHHHHHc
Confidence 5654 22 3556789999999999753
No 101
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=16 Score=29.57 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=16.6
Q ss_pred CEEEEeccCCCCCC-CCChHHHHHHHHH
Q 047544 60 NVMSLQYHLEASPG-PDDSDCVFRDFVE 86 (95)
Q Consensus 60 pi~gvQfHPE~~~~-~~~~~~if~~Fi~ 86 (95)
+=+++||||...+. -.+....|....+
T Consensus 30 RklALq~HPDknpd~ieeat~~F~~i~a 57 (508)
T KOG0717|consen 30 RKLALQYHPDKNPDRIEEATQQFQLIQA 57 (508)
T ss_pred HHHHHhhCCCCCCccHHHHHHHHHHHHH
Confidence 34689999999542 2234566665443
No 102
>PRK00153 hypothetical protein; Validated
Probab=31.16 E-value=1.4e+02 Score=18.68 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=30.9
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCCh
Q 047544 38 GVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDS 77 (95)
Q Consensus 38 ~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~ 77 (95)
..++++.+ .||.|...-.-+..+..+.+.|+.. .+.+.
T Consensus 28 ~~~~~~~s-~~G~V~V~v~G~~~v~~i~Id~~ll-~~~d~ 65 (104)
T PRK00153 28 QMEVEGEA-GGGLVKVTMTGKKEVKRVKIDPSLV-DPEDV 65 (104)
T ss_pred ccEEEEEE-CCCeEEEEEecCceEEEEEECHHHc-CCcCH
Confidence 56788885 6999999999999999999999876 34444
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=30.81 E-value=2e+02 Score=25.15 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=35.2
Q ss_pred eeecCCCeEEEccccceeEEccCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 047544 11 VHNIQNGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGTCAGLAYPA 58 (95)
Q Consensus 11 v~~~~~~~i~~~s~~H~~~v~~~~l~~~~~v~a~~~~dg~iEai~~~~ 58 (95)
+.++.++++..+.+.+.-.|+.-...+-+.|+|+...+|+|.-+-.+.
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~ 233 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF 233 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc
Confidence 567789999889988877776544556788888887777766554443
No 104
>PTZ00120 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=30.09 E-value=36 Score=23.38 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.4
Q ss_pred CCCChHHHHHHHHHHHHhh
Q 047544 73 GPDDSDCVFRDFVELMKSV 91 (95)
Q Consensus 73 ~~~~~~~if~~Fi~~~~~~ 91 (95)
.++.+..+|+.|++.+++.
T Consensus 98 ~~~~A~~Ly~~f~~~l~~~ 116 (154)
T PTZ00120 98 SPEDALPLYNKFVEKFKKE 116 (154)
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 3566789999999999754
No 105
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=28.14 E-value=87 Score=19.50 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=14.8
Q ss_pred CeEEEEEeCCCCeEEEEE
Q 047544 38 GVEVTHINLNDGTCAGLA 55 (95)
Q Consensus 38 ~~~v~a~~~~dg~iEai~ 55 (95)
|+.=.+.|.+||.||++-
T Consensus 31 gl~G~V~N~~DGsVeiva 48 (92)
T COG1254 31 GLTGWVKNLDDGSVEIVA 48 (92)
T ss_pred CCEEEEEECCCCeEEEEE
Confidence 567778888999999984
No 106
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=27.54 E-value=42 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=19.6
Q ss_pred EEeccCCCCCCCCChHHHHHHHHHHHHhhh
Q 047544 63 SLQYHLEASPGPDDSDCVFRDFVELMKSVK 92 (95)
Q Consensus 63 gvQfHPE~~~~~~~~~~if~~Fi~~~~~~~ 92 (95)
-.+||||-. .+.+|.+|...|..+|
T Consensus 77 p~~wkPe~~-----~D~~~lqfCk~CqgYK 101 (414)
T KOG1314|consen 77 PLGWKPENP-----KDEMFLQFCKKCQGYK 101 (414)
T ss_pred CCCCCCCCC-----hhHHHHHHHhhccCcC
Confidence 468999875 2469999999998775
No 107
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=27.33 E-value=44 Score=22.79 Aligned_cols=18 Identities=22% Similarity=0.656 Sum_probs=15.0
Q ss_pred CCChHHHHHHHHHHHHhh
Q 047544 74 PDDSDCVFRDFVELMKSV 91 (95)
Q Consensus 74 ~~~~~~if~~Fi~~~~~~ 91 (95)
++.++.+|+.|++.+++.
T Consensus 99 ~~~A~~ly~~f~~~l~~~ 116 (147)
T PRK05273 99 PEEAEPLYDYFVEALRAQ 116 (147)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 556789999999999864
No 108
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=26.50 E-value=2.7e+02 Score=22.61 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=9.1
Q ss_pred EEEEeccCCCC
Q 047544 61 VMSLQYHLEAS 71 (95)
Q Consensus 61 i~gvQfHPE~~ 71 (95)
|+.+.||||--
T Consensus 197 F~t~~F~P~~P 207 (609)
T KOG4227|consen 197 FYTAEFHPETP 207 (609)
T ss_pred ceeeeecCCCc
Confidence 67899999953
No 109
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=25.54 E-value=1.7e+02 Score=17.96 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=23.7
Q ss_pred eEEEEEeCCCCeEEEEEeCCCCEEEEeccCCC
Q 047544 39 VEVTHINLNDGTCAGLAYPALNVMSLQYHLEA 70 (95)
Q Consensus 39 ~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~ 70 (95)
++|+.-+-.+|.|||-.....-.|-+|||=.+
T Consensus 7 vrv~~qs~~~g~leGeV~Ag~f~W~F~W~F~~ 38 (80)
T PF11344_consen 7 VRVTRQSWQQGCLEGEVSAGGFEWQFQWHFRR 38 (80)
T ss_pred EEEEeeeccCCcEEEEEEccceEEEEEEEEcC
Confidence 56666665688999988877777888887544
No 110
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=25.45 E-value=1.4e+02 Score=25.85 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=14.9
Q ss_pred CCCCEEEEeccCCCCCCCC
Q 047544 57 PALNVMSLQYHLEASPGPD 75 (95)
Q Consensus 57 ~~~pi~gvQfHPE~~~~~~ 75 (95)
.+.|+||+||-|-+..+..
T Consensus 175 ~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred CCCCceEEEecCCCCCCcc
Confidence 3568999999998876543
No 111
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.77 E-value=89 Score=20.60 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEeccCCCCCCCCChHHHHHHHHHHHHh
Q 047544 61 VMSLQYHLEASPGPDDSDCVFRDFVELMKS 90 (95)
Q Consensus 61 i~gvQfHPE~~~~~~~~~~if~~Fi~~~~~ 90 (95)
.|+|||+=-.....++-...|+.|++.+..
T Consensus 30 gF~v~~~~~eg~~ae~~dea~drFidevI~ 59 (119)
T COG3171 30 GFSVQWSFHEGTSAEDVDEAVDRFIDEVIA 59 (119)
T ss_pred heeeEEEecCCccHHHHHHHHHHHHHHHHc
Confidence 478888643322233445789999988764
No 112
>PRK15341 invasion lipoprotein InvH; Provisional
Probab=24.04 E-value=23 Score=23.47 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=20.4
Q ss_pred EeccCCCCCCCCChHHHHHHHHHHHH
Q 047544 64 LQYHLEASPGPDDSDCVFRDFVELMK 89 (95)
Q Consensus 64 vQfHPE~~~~~~~~~~if~~Fi~~~~ 89 (95)
+|=||+++...++-.+++..|.+...
T Consensus 99 FqEhPqYmrSkEdEeqLm~EFkkVll 124 (147)
T PRK15341 99 FQEHPQYMRSKEDEEQLMTEFKKVLL 124 (147)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHhc
Confidence 46699998766677789999988764
No 113
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=23.87 E-value=2.6e+02 Score=22.52 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=8.2
Q ss_pred CEEEEeccCCC
Q 047544 60 NVMSLQYHLEA 70 (95)
Q Consensus 60 pi~gvQfHPE~ 70 (95)
.+--|||||-.
T Consensus 133 rVg~V~wHPtA 143 (472)
T KOG0303|consen 133 RVGLVQWHPTA 143 (472)
T ss_pred eEEEEeecccc
Confidence 45569999964
No 114
>PHA03366 FGAM-synthase; Provisional
Probab=23.86 E-value=52 Score=29.79 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHhh
Q 047544 77 SDCVFRDFVELMKSV 91 (95)
Q Consensus 77 ~~~if~~Fi~~~~~~ 91 (95)
+..+|.+...+|.+.
T Consensus 1288 W~~mF~na~~W~~~~ 1302 (1304)
T PHA03366 1288 WKLMFQDLHLWCLKH 1302 (1304)
T ss_pred HHHHHHHHHHHHHhh
Confidence 457898888888754
No 115
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=23.26 E-value=52 Score=29.46 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHH
Q 047544 77 SDCVFRDFVELMK 89 (95)
Q Consensus 77 ~~~if~~Fi~~~~ 89 (95)
+..+|.+...+|.
T Consensus 1189 W~~mF~na~~W~~ 1201 (1202)
T TIGR01739 1189 WKLMFQRLHLWSL 1201 (1202)
T ss_pred HHHHHHHHHHHHh
Confidence 4568888777664
No 116
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=22.69 E-value=1.6e+02 Score=17.47 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=28.5
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCCCCCCChHHHHH
Q 047544 37 KGVEVTHINLNDGTCAGLAYPALNVMSLQYHLEASPGPDDSDCVFR 82 (95)
Q Consensus 37 ~~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~~~~~~~~~if~ 82 (95)
.||...+. .|.=--++|++....-|.|||-....+.-.+.|++
T Consensus 19 ~Gf~~vrq---kGSH~q~kHp~~~~vtVP~Hp~~dl~~Gtl~~Ilk 61 (66)
T COG1724 19 DGFQLVRQ---KGSHRQYKHPDGGRVTVPFHPGEDLPPGTLRSILK 61 (66)
T ss_pred CCcEEEEe---ecceeEEEcCCCCEEEecCCCccccCcHHHHHHHH
Confidence 47777664 35555678888666789999987765543344544
No 117
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=22.35 E-value=1.9e+02 Score=17.27 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=26.4
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCCEEEEeccCCCC
Q 047544 38 GVEVTHINLNDGTCAGLAYPALNVMSLQYHLEAS 71 (95)
Q Consensus 38 ~~~v~a~~~~dg~iEai~~~~~pi~gvQfHPE~~ 71 (95)
..++++.+ .||.|...-.-...+..+.+.|+..
T Consensus 20 ~~~~~~~s-~~g~V~V~v~g~g~v~~i~i~~~~~ 52 (93)
T PF02575_consen 20 EIEVTGTS-GDGLVTVTVNGNGEVVDIEIDPSAL 52 (93)
T ss_dssp HSEEEEEE-TCCTEEEEEETTS-EEEEEE-GGGG
T ss_pred cCEEEEEE-CCCEEEEEEecCceEEEEEEehHhh
Confidence 35778886 6899999999999999999999876
No 118
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=21.41 E-value=1.3e+02 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=17.2
Q ss_pred eEEEEEeCCCCEEEEeccCCCCC
Q 047544 50 TCAGLAYPALNVMSLQYHLEASP 72 (95)
Q Consensus 50 ~iEai~~~~~pi~gvQfHPE~~~ 72 (95)
-|+||-+++.+++|...|||+..
T Consensus 1147 ~IAGi~s~dGR~l~lMphPer~~ 1169 (1202)
T TIGR01739 1147 NVAGLCSADGRHLALLIDPSLSF 1169 (1202)
T ss_pred ceeeEECCCCCEEEecCCHHHhh
Confidence 56777777777888888888753
No 119
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=21.03 E-value=1.2e+02 Score=14.38 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=13.9
Q ss_pred EEEEeCCCCEEEEeccCCC
Q 047544 52 AGLAYPALNVMSLQYHLEA 70 (95)
Q Consensus 52 Eai~~~~~pi~gvQfHPE~ 70 (95)
..++.-..++.++.|+|..
T Consensus 5 ~~~~~h~~~i~~i~~~~~~ 23 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDG 23 (39)
T ss_dssp EEEESSSSSEEEEEEETTS
T ss_pred EEEcCCCCcEEEEEEeccc
Confidence 3455566788899999973
No 120
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=20.99 E-value=18 Score=25.77 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=7.9
Q ss_pred EEEeccCCCC
Q 047544 62 MSLQYHLEAS 71 (95)
Q Consensus 62 ~gvQfHPE~~ 71 (95)
|+-|||||--
T Consensus 120 yaaqfhPEiF 129 (214)
T PF01606_consen 120 YAAQFHPEIF 129 (214)
T ss_pred HHHhhChhhh
Confidence 4689999964
No 121
>KOG4328 consensus WD40 protein [Function unknown]
Probab=20.81 E-value=73 Score=25.83 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=14.2
Q ss_pred EEEeCCCCEEEEeccCCCC
Q 047544 53 GLAYPALNVMSLQYHLEAS 71 (95)
Q Consensus 53 ai~~~~~pi~gvQfHPE~~ 71 (95)
-++..+.+|+++||||-..
T Consensus 181 v~kv~~~Rit~l~fHPt~~ 199 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTEN 199 (498)
T ss_pred eeEecccceEEEEecccCc
Confidence 3455577899999999543
No 122
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=20.08 E-value=25 Score=19.83 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=6.6
Q ss_pred EEeccCCC
Q 047544 63 SLQYHLEA 70 (95)
Q Consensus 63 gvQfHPE~ 70 (95)
+++|||++
T Consensus 3 ~~~w~PqS 10 (51)
T PF03490_consen 3 NTAWHPQS 10 (51)
T ss_pred CcccCcHH
Confidence 68999976
Done!