BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047545
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSI 140
AII T G I +LF P V+ F + G G F IIK ++IQ GD G
Sbjct: 24 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 83
Query: 141 EDWTTRGKHYSQLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVI 199
+ G+ + ++L+H+ + L + A + G +IT P P L K VFGRV
Sbjct: 84 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 143
Query: 200 KGEDVVQ 206
KG +VVQ
Sbjct: 144 KGMEVVQ 150
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLC-------QRGR---LKGMLFRHIIKHYVIQ 130
+I T G IT+ELF D P + F LC Q G+ G F II ++IQ
Sbjct: 27 SIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQ 86
Query: 131 AGDIDKLGSIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLS 189
GD + + G + + H+A F+L + A + G +ITT P P L
Sbjct: 87 GGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLD 146
Query: 190 EKLIVFGRVIKGEDVVQ 206
K +VFG+V++G +VV+
Sbjct: 147 GKHVVFGKVLEGMEVVK 163
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG---------RLKGMLFRHIIKHYVI 129
AI + G + ELF D P + F LC ++G K LF ++K +++
Sbjct: 34 AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMV 93
Query: 130 QAGDIDKLGSIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDL 188
Q GD + + G + ++KH A F+L + D G +ITT P P L
Sbjct: 94 QGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHL 153
Query: 189 SEKLIVFGRVIKGEDVVQ 206
+VFG+VI G++VV+
Sbjct: 154 DGHHVVFGQVISGQEVVR 171
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 88 GSITVELFKDSSPDVVDEFIDLCQ----RGRL-------KGMLFRHIIKHYVIQAGDIDK 136
G I +EL+ D +P + F+ LC G++ KG F +IK+++IQ GD K
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 137 LGSIEDWTTRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVF 195
+ G + + +KH E F++ + + G +ITT P P L+ +VF
Sbjct: 81 GDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVF 140
Query: 196 GRVIKGEDVV 205
G+V+ G++VV
Sbjct: 141 GKVVSGQEVV 150
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G IT+ LF +P + F LC + G K +F +I++++IQ GD +
Sbjct: 26 GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85
Query: 145 TRGKHYSQLDTSLKHEAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDV 204
G+ ++ + ++KH L + A + G +ITTAP P L + +VFG+V+ G DV
Sbjct: 86 IYGEKFADENLNVKHFVGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDV 145
Query: 205 V 205
V
Sbjct: 146 V 146
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG---------RLKGMLFRHIIKHYVI 129
AI + G + ELF D P + F LC ++G K LF ++K +++
Sbjct: 17 AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMV 76
Query: 130 QAGDIDKLGSIEDWTTRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYITTAPMPDL 188
Q GD + + G + ++KH + F+L + D G +ITT P P L
Sbjct: 77 QGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHL 136
Query: 189 SEKLIVFGRVIKGEDVVQ 206
+VFG+VI G++VV+
Sbjct: 137 DGHHVVFGQVISGQEVVR 154
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKL 137
I D G + + LF + P V+ F L + G KG +F +I++++IQ GD
Sbjct: 13 TIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNF 72
Query: 138 GSIEDWTTRGKHYSQLDTSLKHEAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGR 197
+ G + + +KH + + A ++ G ++TTAP P L + +VFG+
Sbjct: 73 DGTGGKSIYGTRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGK 132
Query: 198 VIKGEDVVQ 206
V++G DVV+
Sbjct: 133 VVEGMDVVK 141
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG---------RLKGMLFRHIIKHYVI 129
AI + G + ELF D P + F LC ++G K LF ++K +++
Sbjct: 17 AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMV 76
Query: 130 QAGDIDKLGSIEDWTTRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYITTAPMPDL 188
Q GD + + G + ++KH + F+L + D G +ITT P P L
Sbjct: 77 QGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHL 136
Query: 189 SEKLIVFGRVIKGEDVVQ 206
+VFG+VI G++VV+
Sbjct: 137 DGHHVVFGQVISGQEVVR 154
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G IT+ LF +P + F LC + G K +F +I++++IQ GD +
Sbjct: 26 GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85
Query: 145 TRGKHYSQLDTSLKHEAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDV 204
G+ ++ + ++KH L + A + G +ITTAP P L +VFG+V+ G DV
Sbjct: 86 IYGEKFADENLNVKHFVGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDV 145
Query: 205 V 205
V
Sbjct: 146 V 146
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG---------RLKGMLFRHIIKHYVIQAGDIDK 136
G I +ELF D P + F LC ++G KG F IIK ++IQ GD
Sbjct: 30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 89
Query: 137 LGSIEDWTTRGKHYSQLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVF 195
+ G+ + + KH+ +L + A + G +ITT P P L K +VF
Sbjct: 90 QNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVF 149
Query: 196 GRVIKGEDVVQ 206
G+VIKG V +
Sbjct: 150 GQVIKGMGVAK 160
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLC------QRGR---LKGMLFRHIIKHYVIQA 131
+I +++ G I ELF D +P + F LC RG+ K +F II ++ Q
Sbjct: 11 SIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQG 70
Query: 132 GDIDKLGSIEDWTTRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYITTAPMPDLSE 190
GDI + G+ ++ + ++KH + +L + A + +IT P P L
Sbjct: 71 GDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDG 130
Query: 191 KLIVFGRVIKGEDVVQ 206
K +VFG+VI+G +VV+
Sbjct: 131 KHVVFGKVIEGMNVVR 146
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLC------QRGR---LKGMLFRHIIKHYVIQA 131
+I +++ G I ELF D +P + F LC RG+ K +F II ++ Q
Sbjct: 11 SIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQG 70
Query: 132 GDIDKLGSIEDWTTRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYITTAPMPDLSE 190
GDI + G+ ++ + ++KH + +L + A + IT P P L
Sbjct: 71 GDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDG 130
Query: 191 KLIVFGRVIKGEDVVQ 206
K +VFG+VI+G +VV+
Sbjct: 131 KHVVFGKVIEGMNVVR 146
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 88 GSITVELFKDSSPDVVDEFIDLCQRGR-----------LKGMLFRHIIKHYVIQAGDIDK 136
G I +LF D P F+ LC + KG F ++K+++IQ GD +
Sbjct: 34 GRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSE 93
Query: 137 LGSIEDWTTRGKHYSQLDTSLKHE-AFMLG-TSKAKHDNQGFDLYITTAPMPDLSEKLIV 194
+ G ++ + LKH+ AF+L ++ KH N G +ITT P P L +V
Sbjct: 94 GNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTN-GSQFFITTKPAPHLDGVHVV 152
Query: 195 FGRVIKGEDVVQ 206
FG VI G +V++
Sbjct: 153 FGLVISGFEVIE 164
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 79 GYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLG 138
GY I T+ G VEL+ SP F LC+ G +F +I ++VIQ GD G
Sbjct: 39 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTG 98
Query: 139 SIEDWTTRGKHYS-QLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFG 196
+ G+++ +++ LKH A +L S + +IT AP+P L K +F
Sbjct: 99 K-GGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFA 157
Query: 197 RVIKGEDVVQ 206
RV K ++
Sbjct: 158 RVSKNMTCIE 167
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 78 PGYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKL 137
P ++T G I +EL+ +P F +L +RG G F IIK ++IQ GD
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 138 GSIEDWTTRGKHYS-QLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVF 195
G + GK + +L LK A +L + A D G ++T AP L K +F
Sbjct: 71 GR-GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 196 GRVIKGEDVVQ 206
GRV +G +V
Sbjct: 130 GRVCQGIGMVN 140
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 78 PGYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKL 137
P ++T G I +EL+ +P F +L +RG G F IIK ++IQ GD
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 138 GSIEDWTTRGKHYS-QLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVF 195
G + GK + +L LK A +L + A D G ++T AP L K +F
Sbjct: 71 GR-GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 196 GRVIKGEDVVQ 206
GRV +G +V
Sbjct: 130 GRVCQGIGMVN 140
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 78 PGYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKL 137
P ++T G I +EL+ +P F +L +RG G F IIK ++IQ GD
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 138 GSIEDWTTRGKHYS-QLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVF 195
G + GK + +L LK A +L + A D G ++T AP L K +F
Sbjct: 71 GR-GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 196 GRVIKGEDVVQ 206
GRV +G +V
Sbjct: 130 GRVCQGIGMVN 140
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLCQRGRLKGML---FRHIIKHYVIQAGDIDKLGSIEDWT 144
G I + LF + P FI+L ++ + +G F +I ++IQ GD + +
Sbjct: 21 GRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRS 80
Query: 145 TRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ ++ + LKH A L + A D G +ITT P L + +VFG++++G D
Sbjct: 81 IYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMD 140
Query: 204 VVQ 206
VV+
Sbjct: 141 VVR 143
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 76 DLPGYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDID 135
+ P AII T G I + LF V F G +F +IKH+++Q GD
Sbjct: 3 NTPKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPS 62
Query: 136 KLGSIEDWTTRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIV 194
G+ + + + L H + FM+ + + G +ITT P P L K V
Sbjct: 63 GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 195 FGRVIKGEDVV 205
FG+V +G +V
Sbjct: 123 FGKVTQGSKIV 133
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLCQ----RGR------LKGMLFRHIIKHYVIQ 130
+I + G I +EL+ D+ P + F LC +GR K +F +I +++IQ
Sbjct: 15 SIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQ 74
Query: 131 AGDIDKLG-----SIEDWTTRGKHYSQLDTSLKHEAF-MLGTSKAKHDNQGFDLYITTAP 184
GD + SI T R + +S + +H L + A + G +I TA
Sbjct: 75 GGDFTRGNGTGGESIYGTTFRDESFS--GKAGRHTGLGCLSMANAGPNTNGSQFFICTAA 132
Query: 185 MPDLSEKLIVFGRVIKGEDVVQ 206
P L K +VFGRVI G DVV+
Sbjct: 133 TPWLDGKHVVFGRVIDGLDVVK 154
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 82 IIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKG---MLFRHIIKHYVIQAGDIDKLG 138
I + G I +EL D P + F LC R G F +I ++ Q GD K
Sbjct: 19 IGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGD 78
Query: 139 SIEDWTTRGKHYSQLDTSLKHEAF-MLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGR 197
+ G+ + + L+HE F +L + + + G +I T L K +VFGR
Sbjct: 79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGR 138
Query: 198 VIKGEDVVQ 206
V+ G++VV+
Sbjct: 139 VVDGQNVVK 147
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKL 137
+I D +G I +L+ ++ P F +L Q G K +F +I +++Q GD +
Sbjct: 10 SINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRH 69
Query: 138 GSIEDWTTRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFG 196
+ G+ ++ + +KH + +L + A + G +ITT P L K +VFG
Sbjct: 70 NGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFG 129
Query: 197 RVIKGEDVVQ 206
VI+G D+V+
Sbjct: 130 EVIEGLDIVR 139
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKL 137
+I D +G I +L+ ++ P F +L Q G K +F +I +++Q GD +
Sbjct: 11 SINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRH 70
Query: 138 GSIEDWTTRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFG 196
+ G+ ++ + +KH + +L + A + G +ITT P L K +VFG
Sbjct: 71 NGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFG 130
Query: 197 RVIKGEDVVQ 206
VI+G D+V+
Sbjct: 131 EVIEGLDIVR 140
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 83 IDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIED 142
+ T G I +E+F + +P + F+ LC G +F IK +++Q GD G +
Sbjct: 5 LHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGN 64
Query: 143 WTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKG 201
K + LKH ++ + + G +IT P L K VFG+VI G
Sbjct: 65 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDG 124
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 83 IDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIED 142
+ T G I +E+F + +P + F+ LC G +F IK +++Q GD G +
Sbjct: 11 LHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGN 70
Query: 143 WTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKG 201
K + LKH ++ + + G +IT P L K VFG+VI G
Sbjct: 71 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDG 130
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 15/142 (10%)
Query: 79 GYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDID--- 135
GY I T +GS+ +EL D +P D F+ LC +F I++++IQ G +
Sbjct: 7 GYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQ 66
Query: 136 ---------KLGSIEDWTTRGKHYSQLDTSLKHEAF--MLGTSKAKHDNQGFDLYITTAP 184
SI + + D L H+ + + KH N + +IT
Sbjct: 67 PSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLS-EFFITFKS 125
Query: 185 MPDLSEKLIVFGRVIKGEDVVQ 206
L+ K +FGRV+ G DV++
Sbjct: 126 CEHLNNKHTIFGRVVGGLDVLR 147
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 82 IIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLG 138
I D G + + LF + P VD F+ L ++G K F +IK ++IQ GD +
Sbjct: 21 IGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGD 80
Query: 139 SIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGR 197
+ G+ + + LKH + + A D G +ITT L K +VFG+
Sbjct: 81 GTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGK 140
Query: 198 VIKGEDVVQ 206
V++G +VV+
Sbjct: 141 VLEGMEVVR 149
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 88 GSITVELFKDSSPDVVDEFIDLCQRGR---LKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G I ++L D P F LC+R + KG F II +++Q GD +
Sbjct: 42 GRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRS 101
Query: 145 TRGKHYSQLDTSLKH--EAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGE 202
G+ + + LKH E + + H N G +IT L EK +VFG V++G
Sbjct: 102 IYGEKFPDENFELKHTKEGILSMANCGAHTN-GSQFFITLGKTQWLDEKHVVFGEVVEGM 160
Query: 203 DVVQ 206
DVV
Sbjct: 161 DVVH 164
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G + +L+ D P + F LC ++G G F +I +++Q GD +
Sbjct: 16 GRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKS 75
Query: 145 TRGKHYSQLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G + + H+ +L + A + G +ITT P P L K +VFG V+ G D
Sbjct: 76 IYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYD 135
Query: 204 VVQ 206
+V+
Sbjct: 136 IVK 138
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 82 IIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLG 138
I D G + + LF + P VD F+ L ++G K F +IK ++IQ GD +
Sbjct: 21 IGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGD 80
Query: 139 SIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGR 197
+ G+ + + LKH + + A D G +ITT L K +VFG+
Sbjct: 81 GTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGK 140
Query: 198 VIKGEDVVQ 206
V++G +VV+
Sbjct: 141 VLEGMEVVR 149
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 82 IIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLG 138
I D G + LF + P VD F+ L ++G K F +IK ++IQ GD +
Sbjct: 14 IGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGD 73
Query: 139 SIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGR 197
+ G+ + + LKH + + A D G +ITT L K +VFG+
Sbjct: 74 GTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGK 133
Query: 198 VIKGEDVVQ 206
V++G +VV+
Sbjct: 134 VLEGMEVVR 142
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 82 IIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLG 138
I D G + LF + P VD F+ L ++G K F +IK ++IQ GD +
Sbjct: 24 IGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGD 83
Query: 139 SIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGR 197
+ G+ + + LKH + + A D G +ITT L K +VFG+
Sbjct: 84 GTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGK 143
Query: 198 VIKGEDVVQ 206
V++G +VV+
Sbjct: 144 VLEGMEVVR 152
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC-------QRGR---LKGMLFRHIIKHYVIQAGDIDKL 137
G I +EL+ D P F LC + G+ KG F II +++IQ GD +
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 138 GSIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFG 196
+ G+ + + KH +L + A + G ++ T L K +VFG
Sbjct: 78 NGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFG 137
Query: 197 RVIKGEDVVQ 206
RV++G DVV+
Sbjct: 138 RVVEGLDVVK 147
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G + +EL D P + F LC ++G KG F +I ++ QAGD +
Sbjct: 18 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G + + +LKH +L + A + G +I T L K +VFG VI+G D
Sbjct: 78 IYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMD 137
Query: 204 VVQ 206
VV+
Sbjct: 138 VVK 140
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G + +EL D P + F LC ++G KG F +I ++ QAGD +
Sbjct: 18 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G + + +LKH +L + A + G +I T L K +VFG VI+G D
Sbjct: 78 IYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMD 137
Query: 204 VVQ 206
VV+
Sbjct: 138 VVK 140
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G + +EL D P + F LC ++G KG F +I ++ QAGD +
Sbjct: 17 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 76
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G + + +LKH +L + A + G +I T L K +VFG VI+G D
Sbjct: 77 IYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMD 136
Query: 204 VVQ 206
VV+
Sbjct: 137 VVK 139
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G + +EL D P + F LC ++G KG F +I ++ QAGD +
Sbjct: 19 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 78
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G + + +LKH +L + A + G +I T L K +VFG VI+G D
Sbjct: 79 IYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMD 138
Query: 204 VVQ 206
VV+
Sbjct: 139 VVK 141
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 12/145 (8%)
Query: 66 ENSFMDSKKSDLPGYAIIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRH 122
N F D K+ P G+I +LF D P F LC ++G G F
Sbjct: 2 SNVFFDITKNGAP--------LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHR 53
Query: 123 IIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKH-EAFMLGTSKAKHDNQGFDLYIT 181
+I +++Q GD + G ++ + LKH + +L + A + G +IT
Sbjct: 54 VIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFIT 113
Query: 182 TAPMPDLSEKLIVFGRVIKGEDVVQ 206
T L K +VFG VI G +VV+
Sbjct: 114 TVVTSWLDGKHVVFGEVIDGMNVVK 138
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 82 IIDTHKGSITVELFKDSSPDVVDEFIDLC--QRGR-LKGMLFRHIIKHYVIQAGDIDKLG 138
I D G I + LF + P V+ F+ L ++G KG +F +IK ++IQ GD
Sbjct: 16 IGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARD 75
Query: 139 SIEDWTTRGKHYSQLDTSLKHEAF-MLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGR 197
+ G+ + + LKH + + A D G +IT L K +VFG+
Sbjct: 76 GTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGK 135
Query: 198 VIKGEDVVQ 206
V+ G VV
Sbjct: 136 VLDGMTVVH 144
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 79 GYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLG 138
GY + T+KG + +EL D +P + FI LC++ G +F I+++VIQ GD G
Sbjct: 20 GYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTG 79
Query: 139 SIED--WTTRGKHYS-QLDTSLKHEAF-MLGTSKAKHDNQGFDLYITTAPMPDLSEKLIV 194
+ + W GK + + +L H +L + + ++ +IT L +K +
Sbjct: 80 TGGESYW---GKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136
Query: 195 FGRVIKGEDVV 205
FGRV+ G DV+
Sbjct: 137 FGRVVGGFDVL 147
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II + Q GD + +
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGKS 76
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 77 IYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXN 136
Query: 204 VVQ 206
+V+
Sbjct: 137 IVE 139
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 84 DTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGM---LFRHIIKHYVIQAGDIDKLGSI 140
+T G I LF P F +LC+R +G F II +++IQ GD +
Sbjct: 18 ETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGT 77
Query: 141 EDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRV 198
+ G ++ + S KH+ +L + A + G +ITTA L K +VFG V
Sbjct: 78 GGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEV 136
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 137
Query: 204 VVQ 206
+V+
Sbjct: 138 IVE 140
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 137
Query: 204 VVQ 206
+V+
Sbjct: 138 IVE 140
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 37 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 96
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 97 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 156
Query: 204 VVQ 206
+V+
Sbjct: 157 IVE 159
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 26 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 85
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 86 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 145
Query: 204 VVQ 206
+V+
Sbjct: 146 IVE 148
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 137
Query: 204 VVQ 206
+V+
Sbjct: 138 IVE 140
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 76
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 77 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 136
Query: 204 VVQ 206
+V+
Sbjct: 137 IVE 139
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 82 IIDTHKGSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLG 138
I D G I + LF P V+ F+ L ++G KG F +IK ++IQ GDI
Sbjct: 24 IGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGD 83
Query: 139 SIEDWTTRGKHYSQLDTSLKHEAF-MLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGR 197
+ G+ + + LKH + + A D G +IT L K +VFG+
Sbjct: 84 GTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGK 143
Query: 198 VIKGEDVVQ 206
VI G VV
Sbjct: 144 VIDGMTVVH 152
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 137
Query: 204 VVQ 206
+V+
Sbjct: 138 IVE 140
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 83 IDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIED 142
I T+ G + ELF P F+ L G K +F IK ++IQ GD G +
Sbjct: 21 IITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGE 80
Query: 143 WTTRGKHY-SQLDTSLKHEAFML------GTSKAKHDNQGFDLYITTAPMPDLSEKLIVF 195
+ G+++ ++ LK++ + G SK + N G +IT + +P L+ + ++F
Sbjct: 81 -SIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTN-GSQFFITYSSLPQLNGEYVIF 138
Query: 196 GRVIKG 201
G++I G
Sbjct: 139 GKLIDG 144
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 78 IYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 137
Query: 204 VVQ 206
+V+
Sbjct: 138 IVE 140
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD +
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGKS 76
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 77 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 136
Query: 204 VVQ 206
+V+
Sbjct: 137 IVE 139
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 76
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG V +G +
Sbjct: 77 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMN 136
Query: 204 VVQ 206
+V+
Sbjct: 137 IVE 139
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q G+ +
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 137
Query: 204 VVQ 206
+V+
Sbjct: 138 IVE 140
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L +VFG+V +G +
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMN 137
Query: 204 VVQ 206
+V+
Sbjct: 138 IVE 140
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L +VFG+V +G +
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMN 137
Query: 204 VVQ 206
+V+
Sbjct: 138 IVE 140
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q GD + +
Sbjct: 22 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 81
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L +VFG+V +G +
Sbjct: 82 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMN 141
Query: 204 VVQ 206
+V+
Sbjct: 142 IVE 144
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G ++ ELF D P + F L ++G KG F II ++ Q G+ +
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGKS 77
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G+ + + LKH +L + A + G +I TA L K +VFG+V +G +
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMN 137
Query: 204 VVQ 206
+V+
Sbjct: 138 IVE 140
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Query: 79 GYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLG 138
G ++ T G I +EL+ +P FI LC +F ++ +++Q GD G
Sbjct: 25 GKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTG 84
Query: 139 SIEDWTTRGKHYSQLDTSLK--HEAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFG 196
S + + + L+ + + HDN G + T +L+ K +FG
Sbjct: 85 SGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDN-GSQFFFTLGRADELNNKHTIFG 143
Query: 197 RV 198
+V
Sbjct: 144 KV 145
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 20/142 (14%)
Query: 78 PGYAI-IDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDK 136
PG + + T+ G I +EL + +P V+ F++ ++G G +F +I ++IQ G +
Sbjct: 2 PGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEP 61
Query: 137 LGSIEDWTTRGKHYSQLDTSLKHEAFMLGTSKAK-------------HDNQGFDLYITTA 183
++ T ++ + LK++ + + ++ +DN+ + ++
Sbjct: 62 --GLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLN---HSS 116
Query: 184 PMPDLSEKLIVFGRVIKGEDVV 205
P P VFG+V++G+D+V
Sbjct: 117 PTPQ-GWGYAVFGKVVEGQDIV 137
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLC--QRG-RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G IT+ELF + P + F LC ++G K +F +I +V Q GDI K +
Sbjct: 21 GRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQS 80
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
G + + +KH +L + + IT L K +VFG V G D
Sbjct: 81 IYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMD 140
Query: 204 VVQ 206
V+
Sbjct: 141 TVK 143
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 88 GSITVELFKDSSPDVVDEFIDLCQRGRL---------KGMLFRHIIKHYVIQAGD-IDKL 137
G + +ELF D P + F C G KG F +IK ++IQ GD ++
Sbjct: 25 GRMKIELFADVVPKTAENFRQFCT-GEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 138 GSIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFG 196
G+ RG ++ + L+H A +L + + G +IT + L K +VFG
Sbjct: 84 GTGVASIYRGP-FADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 197 RVIKG 201
++I G
Sbjct: 143 KIIDG 147
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 55 QAENQELVVEDENSFMDSKKSDL---PGYAII-------DTHKGSITVELFKDSSPDVVD 104
+ EN L DEN+ + S+L P ++ + G ELF++ P +
Sbjct: 31 KVENLVLDDNDENTIIPYYLSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSE 90
Query: 105 EFIDLCQRGR--------LKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTS 156
F C K +F +IK ++IQ GD + G+ + +
Sbjct: 91 NFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFD 150
Query: 157 LKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVV 205
+KH+ +L + + + G +ITT L K +VFGR+I + ++
Sbjct: 151 IKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLL 200
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 83 IDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIED 142
+ T+ G+IT++LF D +P+ F + G G +F +I ++IQ G + ++
Sbjct: 4 LQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFEP--GMKQ 61
Query: 143 WTTRGKHYSQLDTSLKHEAFMLGTSKAK-------------HDNQGFDLYITTAPMPDLS 189
+TR ++ + L ++ + + ++ DN D TA
Sbjct: 62 KSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTA----HG 117
Query: 190 EKLIVFGRVIKGEDVV 205
VFG V++G DVV
Sbjct: 118 WGYAVFGEVVEGTDVV 133
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 19/138 (13%)
Query: 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGR---------------LKGMLFRHIIK 125
A + T++G I + LF + +P V F+ L Q + G +F +I+
Sbjct: 26 ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQ 85
Query: 126 HYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAP 184
++IQ GD G K + L+ + ++L + A G +IT
Sbjct: 86 GFMIQGGDPTGTGRGGPGY---KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK 142
Query: 185 MPDLSEKLIVFGRVIKGE 202
P L+ + +FG VI E
Sbjct: 143 TPHLNRRHTIFGEVIDAE 160
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 85 THKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDID 135
T+ G I ++ F D +P+ V F+D C+ G +F +I ++IQ G +
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFE 56
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 85 THKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDID 135
T+ G I ++ F D +P+ V F+D C+ G +F +I ++IQ G +
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFE 56
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 69 FMDSKKSDLPGYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGR---LKGMLFRHIIK 125
+MD K + P G I + L D P + F LC + KG F II
Sbjct: 7 YMDIKIGNKP--------AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIP 58
Query: 126 HYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAP 184
++ Q GD + GK + + LKH +L + + + G ++T
Sbjct: 59 QFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDK 118
Query: 185 MPDLSEKLIVFGRVIKGEDVVQ 206
L K +VFG V +G DV++
Sbjct: 119 TDWLDGKHVVFGEVTEGLDVLR 140
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 69 FMDSKKSDLPGYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGR---LKGMLFRHIIK 125
+MD K + P G I + L D P + F LC + KG F II
Sbjct: 15 YMDIKIGNKP--------AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIP 66
Query: 126 HYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAP 184
++ Q GD + GK + + LKH +L + + + G ++T
Sbjct: 67 QFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDK 126
Query: 185 MPDLSEKLIVFGRVIKGEDVVQ 206
L K +VFG V +G DV++
Sbjct: 127 TDWLDGKHVVFGEVTEGLDVLR 148
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
Query: 88 GSITVELFKDSSPDVVDEFIDLCQRGR---LKGMLFRHIIKHYVIQAGDIDKLGSIEDWT 144
G I L D P + F LC + KG F II + Q GD +
Sbjct: 27 GRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKS 86
Query: 145 TRGKHYSQLDTSLKHEA-FMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGED 203
GK + + LKH +L + + + G ++T L K +VFG V +G D
Sbjct: 87 IYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLD 146
Query: 204 VVQ 206
V++
Sbjct: 147 VLR 149
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 79 GYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLG 138
G ++ T G + VEL+ P F+ LC G +F ++K +++Q GD G
Sbjct: 22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTG 81
Query: 139 -SIEDWTTRGKHY---SQLDTSLKHEAFM----LGTSK--AKHDNQGFDL-------YIT 181
D T GK + + ++ + LG S A++D +G L +IT
Sbjct: 82 RGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFIT 141
Query: 182 TAPMPDLSEKLIVFGRV 198
A L+ +FG+V
Sbjct: 142 LARADVLNNAYTLFGKV 158
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Query: 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGS 139
+ ++ T G+I +EL K +P V F+D G F +I ++IQ G +
Sbjct: 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE--Q 63
Query: 140 IEDWTTRGKHYSQLDTSLKHEAFMLGTSK-AKHDNQGFDLYITTAPMPDLSE-----KLI 193
++ ++ D L++ + ++ A D+ +I A L
Sbjct: 64 MQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYA 123
Query: 194 VFGRVIKGEDVV 205
VFG+V+KG DV
Sbjct: 124 VFGKVVKGMDVA 135
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Query: 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGS 139
+ ++ T G+I +EL K +P V F+D G F +I ++IQ G +
Sbjct: 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE--Q 63
Query: 140 IEDWTTRGKHYSQLDTSLKHEAFMLGTSK-AKHDNQGFDLYITTAPMPDLSE-----KLI 193
++ ++ D L++ + ++ A D+ +I A L
Sbjct: 64 MQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYA 123
Query: 194 VFGRVIKGEDVV 205
VFG+V+KG DV
Sbjct: 124 VFGKVVKGMDVA 135
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 61 LVVEDENSFMDSKKSDL--PGYAIIDTHKGSITVELFKDSSPDVV 103
LVV+DE D + +L GY + H G+ VE+ ++ PD++
Sbjct: 6 LVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLI 50
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 61 LVVEDENSFMDSKKSDL--PGYAIIDTHKGSITVELFKDSSPDVV 103
LVV+DE D + +L GY + H G+ VE+ ++ PD++
Sbjct: 6 LVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLI 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,860,365
Number of Sequences: 62578
Number of extensions: 231137
Number of successful extensions: 635
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 80
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)