Query 047545
Match_columns 206
No_of_seqs 205 out of 1419
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 12:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0652 PpiB Peptidyl-prolyl c 100.0 2.2E-47 4.8E-52 300.5 11.8 123 81-206 2-128 (158)
2 KOG0881 Cyclophilin type pepti 100.0 6.5E-48 1.4E-52 288.4 6.1 129 77-205 8-137 (164)
3 KOG0546 HSP90 co-chaperone CPR 100.0 4.5E-45 9.8E-50 314.8 8.7 127 80-206 15-153 (372)
4 cd01927 cyclophilin_WD40 cyclo 100.0 1.3E-43 2.8E-48 278.4 12.8 125 82-206 1-126 (148)
5 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.7E-43 3.7E-48 282.5 12.6 126 80-205 46-176 (217)
6 cd01928 Cyclophilin_PPIL3_like 100.0 2.6E-43 5.7E-48 278.1 13.6 127 80-206 2-129 (153)
7 cd01922 cyclophilin_SpCYP2_lik 100.0 2.7E-43 5.8E-48 276.0 12.8 125 82-206 1-126 (146)
8 cd01923 cyclophilin_RING cyclo 100.0 6E-43 1.3E-47 277.7 13.6 127 80-206 1-128 (159)
9 KOG0882 Cyclophilin-related pe 100.0 6.5E-43 1.4E-47 307.3 8.8 128 79-206 405-533 (558)
10 PRK10903 peptidyl-prolyl cis-t 100.0 3.6E-41 7.9E-46 274.3 15.9 125 80-206 30-160 (190)
11 cd01921 cyclophilin_RRM cyclop 100.0 1.2E-41 2.5E-46 272.0 12.6 125 82-206 1-134 (166)
12 KOG0883 Cyclophilin type, U bo 100.0 5.3E-42 1.2E-46 296.9 9.0 133 74-206 273-406 (518)
13 KOG0884 Similar to cyclophilin 100.0 1.1E-41 2.4E-46 253.6 8.4 127 80-206 2-129 (161)
14 PRK10791 peptidyl-prolyl cis-t 100.0 1.2E-40 2.7E-45 265.6 13.0 124 81-206 2-134 (164)
15 cd01920 cyclophilin_EcCYP_like 100.0 2E-40 4.4E-45 262.1 12.6 122 83-206 2-129 (155)
16 cd01925 cyclophilin_CeCYP16-li 100.0 1E-39 2.3E-44 261.9 14.5 126 79-204 6-133 (171)
17 cd01924 cyclophilin_TLP40_like 100.0 1.6E-39 3.5E-44 261.8 12.3 123 84-206 3-160 (176)
18 KOG0879 U-snRNP-associated cyc 100.0 8.3E-40 1.8E-44 247.5 6.9 127 80-206 17-152 (177)
19 cd01926 cyclophilin_ABH_like c 100.0 1.9E-38 4.1E-43 253.0 12.8 125 81-206 8-142 (164)
20 PTZ00060 cyclophilin; Provisio 100.0 2E-38 4.3E-43 257.0 12.4 125 81-206 23-158 (183)
21 PLN03149 peptidyl-prolyl isome 100.0 8.3E-38 1.8E-42 253.9 14.3 121 85-206 30-161 (186)
22 PTZ00221 cyclophilin; Provisio 100.0 2.2E-37 4.9E-42 260.0 14.5 123 80-206 54-194 (249)
23 cd00317 cyclophilin cyclophili 100.0 5.3E-37 1.2E-41 239.5 12.9 124 82-206 1-125 (146)
24 KOG0111 Cyclophilin-type pepti 100.0 1.2E-37 2.6E-42 253.1 6.5 127 80-206 143-273 (298)
25 KOG0885 Peptidyl-prolyl cis-tr 100.0 7E-37 1.5E-41 263.8 10.2 122 79-200 13-135 (439)
26 PF00160 Pro_isomerase: Cyclop 100.0 9.7E-36 2.1E-40 234.4 12.1 127 80-206 1-133 (155)
27 KOG0415 Predicted peptidyl pro 100.0 1E-33 2.2E-38 243.1 9.5 126 80-205 2-136 (479)
28 KOG0865 Cyclophilin type pepti 100.0 2.7E-30 5.9E-35 205.1 6.1 126 81-206 11-143 (167)
29 KOG0882 Cyclophilin-related pe 98.9 1.5E-09 3.3E-14 97.0 5.9 206 1-206 19-237 (558)
30 PRK00969 hypothetical protein; 96.8 0.0071 1.5E-07 55.7 9.1 98 89-206 205-302 (508)
31 TIGR03268 methan_mark_3 putati 96.7 0.012 2.5E-07 54.2 9.5 98 89-206 202-299 (503)
32 COG4070 Predicted peptidyl-pro 96.3 0.018 3.9E-07 51.6 7.6 94 89-206 204-301 (512)
33 TIGR03268 methan_mark_3 putati 95.4 0.17 3.7E-06 46.7 10.4 110 86-205 373-490 (503)
34 PF12903 DUF3830: Protein of u 92.7 0.23 5E-06 38.9 4.7 46 87-135 7-54 (147)
35 PRK00969 hypothetical protein; 92.6 1.3 2.8E-05 41.2 10.1 110 79-206 51-163 (508)
36 COG4070 Predicted peptidyl-pro 91.6 0.93 2E-05 41.0 7.7 25 87-111 375-399 (512)
37 PF04126 Cyclophil_like: Cyclo 66.8 51 0.0011 24.6 9.6 95 81-205 3-108 (120)
38 PF07423 DUF1510: Protein of u 61.6 12 0.00026 31.3 3.9 15 18-32 10-24 (217)
39 PF06072 Herpes_US9: Alphaherp 55.6 11 0.00023 25.0 2.1 8 14-21 24-31 (60)
40 COG1999 Uncharacterized protei 44.9 1.4E+02 0.003 24.4 7.7 33 80-112 59-96 (207)
41 PF11119 DUF2633: Protein of u 35.8 47 0.001 21.9 2.8 15 17-31 2-16 (59)
42 PF14283 DUF4366: Domain of un 35.7 29 0.00064 28.9 2.3 21 102-125 71-91 (218)
43 COG5429 Uncharacterized secret 34.9 1E+02 0.0023 26.2 5.3 27 80-113 44-70 (261)
44 PHA03001 putative virion core 32.7 2.3E+02 0.005 21.7 7.5 47 80-126 5-60 (132)
45 PF13800 Sigma_reg_N: Sigma fa 31.5 26 0.00056 24.9 1.1 10 14-23 6-15 (96)
46 PLN02745 Putative pectinestera 31.2 92 0.002 30.0 5.1 6 177-182 314-319 (596)
47 COG4594 FecB ABC-type Fe3+-cit 30.4 1.4E+02 0.0029 26.0 5.4 35 75-112 47-88 (310)
48 PF06138 Chordopox_E11: Chordo 28.1 1.9E+02 0.0042 22.1 5.4 47 80-126 5-61 (130)
49 PRK05696 fliL flagellar basal 27.8 2.5E+02 0.0054 22.1 6.3 10 89-98 92-101 (170)
50 PRK08455 fliL flagellar basal 26.5 2.2E+02 0.0047 22.9 5.8 7 90-96 109-115 (182)
51 PHA00407 phage lambda Rz1-like 26.3 2E+02 0.0042 20.1 4.6 10 5-14 5-14 (84)
52 PF04341 DUF485: Protein of un 26.1 56 0.0012 23.1 2.1 21 4-24 1-21 (91)
53 PF05913 DUF871: Bacterial pro 25.3 55 0.0012 29.4 2.3 46 159-205 298-344 (357)
54 PF11770 GAPT: GRB2-binding ad 24.6 61 0.0013 25.6 2.1 25 23-47 9-33 (158)
55 PRK10053 hypothetical protein; 23.2 2.3E+02 0.005 21.7 5.1 18 81-98 79-96 (130)
56 PF12273 RCR: Chitin synthesis 22.6 72 0.0016 24.0 2.2 11 112-122 75-86 (130)
57 PHA00350 putative assembly pro 20.6 6.6E+02 0.014 23.0 9.5 45 89-133 328-378 (399)
No 1
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-47 Score=300.53 Aligned_cols=123 Identities=32% Similarity=0.528 Sum_probs=110.4
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCC-CCCccccccccccccCCC--CC
Q 047545 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKL-GSIEDWTTRGKHYSQLDT--SL 157 (206)
Q Consensus 81 ~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~-~~~~~~~~~~~~~~~~~~--~l 157 (206)
++++|+.|+|+||||++.||+||+||++||+.+||||+.||||+++|||||||++++ +.+++ +.++.+|... ..
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~~~ 78 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFALNGD 78 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccccccc
Confidence 678999999999999999999999999999999999999999999999999999987 55554 2455565333 34
Q ss_pred CCCceEEEEecCC-CCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 158 KHEAFMLGTSKAK-HDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 158 ~h~~G~vsma~~~-~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
.|.+|+|||||++ ||||+|||||++.++||||++|+|||+|++|||+||
T Consensus 79 ~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~Gmdvvd 128 (158)
T COG0652 79 RHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVD 128 (158)
T ss_pred cCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHH
Confidence 4669999999988 999999999999999999999999999999999985
No 2
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-48 Score=288.45 Aligned_cols=129 Identities=33% Similarity=0.535 Sum_probs=125.1
Q ss_pred CCcEEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCC
Q 047545 77 LPGYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTS 156 (206)
Q Consensus 77 ~~~~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.+..|+++|+.|.|++|||-+.||+||+||..|++.|||||+.||||+++||||||||+++|.++.+.++.+|.+|.+..
T Consensus 8 q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~d 87 (164)
T KOG0881|consen 8 QPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSD 87 (164)
T ss_pred CCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhh
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCcccc
Q 047545 157 LKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVV 205 (206)
Q Consensus 157 l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl 205 (206)
|+|. +|.|||||++||+|||||||||.+.+||||+|++||||..||+|+
T Consensus 88 LkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vi 137 (164)
T KOG0881|consen 88 LKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVI 137 (164)
T ss_pred hcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHH
Confidence 9998 999999999999999999999999999999999999999999987
No 3
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-45 Score=314.75 Aligned_cols=127 Identities=34% Similarity=0.624 Sum_probs=117.0
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhCC-----------CcCCceEEEeecCeEEEecccCCCCCCcccccccc
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRG-----------RLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGK 148 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~ 148 (206)
+-+...+.|||+||||.|.||+||+||+.||++. .|+|+.||||+++|||||||++.+.+.|++++++.
T Consensus 15 ISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~ 94 (372)
T KOG0546|consen 15 ISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGE 94 (372)
T ss_pred EEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCccccccc
Confidence 5677889999999999999999999999999863 59999999999999999999996655556667788
Q ss_pred ccccCCCCCCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 149 HYSQLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 149 ~~~~~~~~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
.++++++.++|+ +++|||||.||||||||||||+.++|||||+|+|||+||+|++||+
T Consensus 95 ~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr 153 (372)
T KOG0546|consen 95 KFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVR 153 (372)
T ss_pred ccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHH
Confidence 889999999998 8999999999999999999999999999999999999999999984
No 4
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.3e-43 Score=278.41 Aligned_cols=125 Identities=35% Similarity=0.582 Sum_probs=114.7
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCCC-
Q 047545 82 IIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHE- 160 (206)
Q Consensus 82 ~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h~- 160 (206)
+++|+.|+|+||||.+.||++|+||++||+.+||+|+.||||+++|++||||+.+.+.++.+.++..+.+|....++|.
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 4789999999999999999999999999999999999999999999999999988777766555566666666678888
Q ss_pred ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 161 AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 161 ~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
+|+|+||+.++++++|||||+++++|+||++|+|||||++|||||+
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~ 126 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQ 126 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHH
Confidence 6999999999999999999999999999999999999999999985
No 5
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=282.51 Aligned_cols=126 Identities=33% Similarity=0.511 Sum_probs=114.7
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhC---CC-cCCceEEEeecCeEEEecccCCCCCCccccccccccccCCC
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQR---GR-LKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDT 155 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~---g~-Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
+.+.+...|||+|.||++.+|+||+||.+||.+ +| |.|++||||+|||||||||++.+++.++.+++++.++++++
T Consensus 46 i~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DENf 125 (217)
T KOG0880|consen 46 IEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDENF 125 (217)
T ss_pred EEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCccc
Confidence 445577889999999999999999999999983 33 99999999999999999999977555666677777788889
Q ss_pred CCCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCcccc
Q 047545 156 SLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVV 205 (206)
Q Consensus 156 ~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl 205 (206)
.|+|. +|.|||||.|||+||||||||+...+||||+|+|||+|++|||+|
T Consensus 126 ~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv 176 (217)
T KOG0880|consen 126 KLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVV 176 (217)
T ss_pred eeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHH
Confidence 99998 899999999999999999999999999999999999999999987
No 6
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=2.6e-43 Score=278.08 Aligned_cols=127 Identities=29% Similarity=0.515 Sum_probs=115.2
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCC
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKH 159 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h 159 (206)
.|+++|+.|+|+||||++.||+||+||++||+++||+|+.||||+++|++||||+.+++.++...++..+.+|....++|
T Consensus 2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~ 81 (153)
T cd01928 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKH 81 (153)
T ss_pred EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCc
Confidence 47899999999999999999999999999999999999999999999999999998877766554555565665556777
Q ss_pred -CceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 160 -EAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 160 -~~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
.+|+|+||++++++++|||||++++.|+||++|+|||||++|||||+
T Consensus 82 ~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~ 129 (153)
T cd01928 82 DSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLD 129 (153)
T ss_pred CCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHH
Confidence 49999999999999999999999999999999999999999999985
No 7
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2.7e-43 Score=276.05 Aligned_cols=125 Identities=34% Similarity=0.559 Sum_probs=113.6
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCCC-
Q 047545 82 IIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHE- 160 (206)
Q Consensus 82 ~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h~- 160 (206)
+++|+.|+|+||||.+.||++|+||++||+++||+++.||||+++|++||||+.+.+.++...++..+.+|....++|.
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 3689999999999999999999999999999999999999999999999999987776665444555666656678887
Q ss_pred ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 161 AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 161 ~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
+|+|+|++++|++++|||||+++++|+||++|+|||||++|||||+
T Consensus 81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~ 126 (146)
T cd01922 81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIE 126 (146)
T ss_pred CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999999999985
No 8
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=6e-43 Score=277.67 Aligned_cols=127 Identities=28% Similarity=0.527 Sum_probs=116.8
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCC
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKH 159 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h 159 (206)
+|+++|+.|+|+||||++.||+||+||++||+.+||+|+.||||+++|++||||+.+++.++...++..+.+|....++|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence 37899999999999999999999999999999999999999999999999999998877777665666666776667888
Q ss_pred C-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 160 E-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 160 ~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
. +|+|+|+++++++++|||||+++++|+||++|+|||||++|||+|+
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~ 128 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLE 128 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHH
Confidence 5 9999999999999999999999999999999999999999999985
No 9
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-43 Score=307.33 Aligned_cols=128 Identities=33% Similarity=0.522 Sum_probs=124.6
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCC
Q 047545 79 GYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLK 158 (206)
Q Consensus 79 ~~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (206)
..++++|++|+|.|.||+++||+||+||-..|++|||||..|||||+|||||+|||.|+|+||++.|+.+|.+|..+.|+
T Consensus 405 ~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lr 484 (558)
T KOG0882|consen 405 KAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLR 484 (558)
T ss_pred cceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCcccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 159 HE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 159 h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
|+ +-+|||||+|||+||||||||..++||||++|+|||||+.|||||+
T Consensus 485 hdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvq 533 (558)
T KOG0882|consen 485 HDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQ 533 (558)
T ss_pred cCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHh
Confidence 99 6799999999999999999999999999999999999999999985
No 10
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=3.6e-41 Score=274.35 Aligned_cols=125 Identities=23% Similarity=0.398 Sum_probs=109.6
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCC
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKH 159 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h 159 (206)
.++++|+.|+|+||||++.||+||+||++||+.+||||+.||||+++|++||||+.+...+.. .+..+.+|....++|
T Consensus 30 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~~~--~~~~~~~e~~~~l~~ 107 (190)
T PRK10903 30 HVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKK--PNPPIKNEADNGLRN 107 (190)
T ss_pred EEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCCCC--CCCcccCcccccCcC
Confidence 589999999999999999999999999999999999999999999999999999876533222 133455565567788
Q ss_pred CceEEEEecC-CCCCCcceEEEEcCCCCCCCC-----CccEEEEEEeCccccC
Q 047545 160 EAFMLGTSKA-KHDNQGFDLYITTAPMPDLSE-----KLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 160 ~~G~vsma~~-~~~s~gSqFfIt~~~~~~Ld~-----~~~VFG~Vi~G~dvl~ 206 (206)
.+|+|+|||. +||+|+|||||+++++++||+ +|+|||+|++|||||+
T Consensus 108 ~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~ 160 (190)
T PRK10903 108 TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD 160 (190)
T ss_pred CCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHH
Confidence 8999999995 589999999999999999994 8999999999999985
No 11
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.2e-41 Score=272.01 Aligned_cols=125 Identities=26% Similarity=0.417 Sum_probs=109.2
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCcccccc-------ccccccCC
Q 047545 82 IIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTR-------GKHYSQLD 154 (206)
Q Consensus 82 ~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~-------~~~~~~~~ 154 (206)
+++|+.|+|+||||.+.||+||+||++||+.+||+|+.||||+++|+|||||+.+++.++...++ ..+.+|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 36899999999999999999999999999999999999999999999999999877665543221 12344555
Q ss_pred CCCCC-CceEEEEecCCCCCCcceEEEEcCC-CCCCCCCccEEEEEEeCccccC
Q 047545 155 TSLKH-EAFMLGTSKAKHDNQGFDLYITTAP-MPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 155 ~~l~h-~~G~vsma~~~~~s~gSqFfIt~~~-~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
..++| .+|+|+||++++++++|||||++.+ .|+||++|+|||||++|||||+
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~ 134 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLE 134 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHH
Confidence 67788 4999999999999999999999986 7999999999999999999985
No 12
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-42 Score=296.85 Aligned_cols=133 Identities=26% Similarity=0.473 Sum_probs=127.5
Q ss_pred CCCCCcEEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccC
Q 047545 74 KSDLPGYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQL 153 (206)
Q Consensus 74 ~~~~~~~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~ 153 (206)
.+....+|.+.|+.|+|.|||+.|.+|.+|+||+.||++|||+|+.|||.|.|||||||||+|+|.||++.|+.+|.+|.
T Consensus 273 rvKkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf 352 (518)
T KOG0883|consen 273 RVKKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEF 352 (518)
T ss_pred cccccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCcccccc
Confidence 34445689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 154 DTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 154 ~~~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
.+.|.|+ ||+|||||+|||+|||||||++.+..|||++|+|||+|+-|+|+|+
T Consensus 353 ~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~ 406 (518)
T KOG0883|consen 353 CSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLT 406 (518)
T ss_pred CCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHH
Confidence 9999998 9999999999999999999999999999999999999999999874
No 13
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=253.63 Aligned_cols=127 Identities=26% Similarity=0.475 Sum_probs=123.5
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCC
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKH 159 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h 159 (206)
.|+++|..|+|.||||.+.+|++|+||+.||...||+++.|||-+++|++|+||++.+|.+|.+.|+.+|.+|...-|+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred C-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 160 E-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 160 ~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
. ||+|||||+|||+|+||||||++..||||-+|+|||+||+|+|.||
T Consensus 82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etld 129 (161)
T KOG0884|consen 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLD 129 (161)
T ss_pred ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHH
Confidence 8 9999999999999999999999999999999999999999999875
No 14
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.2e-40 Score=265.57 Aligned_cols=124 Identities=23% Similarity=0.447 Sum_probs=107.0
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCCC
Q 047545 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHE 160 (206)
Q Consensus 81 ~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h~ 160 (206)
|+++|+.|+|+|+||++.||+||+||++||+.+|||++.||||+++|+|||||+....... ..+..+.+|....++|.
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~~--~~~~~~~~e~~~~~~~~ 79 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQK--ATKEPIKNEANNGLKNT 79 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCCCCcC--CCCCCcCCcccccccCC
Confidence 6789999999999999999999999999999999999999999999999999975332211 12345556656678889
Q ss_pred ceEEEEecC-CCCCCcceEEEEcCCCCCCC-------C-CccEEEEEEeCccccC
Q 047545 161 AFMLGTSKA-KHDNQGFDLYITTAPMPDLS-------E-KLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 161 ~G~vsma~~-~~~s~gSqFfIt~~~~~~Ld-------~-~~~VFG~Vi~G~dvl~ 206 (206)
+|+||||+. +|++++|||||++.++++|| + +|+|||+|++|||||+
T Consensus 80 ~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~ 134 (164)
T PRK10791 80 RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVD 134 (164)
T ss_pred CcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHH
Confidence 999999986 48999999999999988876 3 7999999999999985
No 15
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2e-40 Score=262.13 Aligned_cols=122 Identities=24% Similarity=0.389 Sum_probs=107.0
Q ss_pred EEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCCCce
Q 047545 83 IDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHEAF 162 (206)
Q Consensus 83 ~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h~~G 162 (206)
++|+.|+|+||||++.||+||+||++||+.+||||+.||||+++||+||||+...+....+ +..+.+|....++|.+|
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~~~--~~~~~~e~~~~~~~~~G 79 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQKET--LKPIKNEAGNGLSNTRG 79 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCcccc--CCcccCcccccccCCce
Confidence 6799999999999999999999999999999999999999999999999998865544321 33455555556778899
Q ss_pred EEEEecC-CCCCCcceEEEEcCCCCCCCC-----CccEEEEEEeCccccC
Q 047545 163 MLGTSKA-KHDNQGFDLYITTAPMPDLSE-----KLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 163 ~vsma~~-~~~s~gSqFfIt~~~~~~Ld~-----~~~VFG~Vi~G~dvl~ 206 (206)
+||||+. +|++++|||||+++++|+||+ +|+|||+|++|||||+
T Consensus 80 ~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~ 129 (155)
T cd01920 80 TIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVD 129 (155)
T ss_pred EEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHH
Confidence 9999995 589999999999999999995 7999999999999985
No 16
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1e-39 Score=261.91 Aligned_cols=126 Identities=24% Similarity=0.458 Sum_probs=112.6
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCC
Q 047545 79 GYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLK 158 (206)
Q Consensus 79 ~~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (206)
..|+++|+.|+|+||||.+.+|+||+||++||+.+||+|+.||||+++|++||||+.+++.++.+.++..+.+|....++
T Consensus 6 ~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~~~~~ 85 (171)
T cd01925 6 GKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFHSRLR 85 (171)
T ss_pred cEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccccCcC
Confidence 36899999999999999999999999999999999999999999999999999999887777766556666666666676
Q ss_pred C-CceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEe-Cccc
Q 047545 159 H-EAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIK-GEDV 204 (206)
Q Consensus 159 h-~~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~-G~dv 204 (206)
| .+|+|+||++++++++|||||++++.|+||++|+|||+|++ +|++
T Consensus 86 ~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~ 133 (171)
T cd01925 86 FNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYN 133 (171)
T ss_pred CCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHH
Confidence 6 59999999999999999999999999999999999999993 4444
No 17
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1.6e-39 Score=261.79 Aligned_cols=123 Identities=21% Similarity=0.296 Sum_probs=103.3
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCc---------------------c
Q 047545 84 DTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIE---------------------D 142 (206)
Q Consensus 84 ~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~---------------------~ 142 (206)
.|+.|+|+||||++.||+||+||++||+.+|||++.||||+++|||||||+.+++.+. .
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 5899999999999999999999999999999999999999999999999998654221 1
Q ss_pred ccccccc-----cccCCCCCCCCceEEEEecCC--CCCCcceEEEEcC-------CCCCCCCCccEEEEEEeCccccC
Q 047545 143 WTTRGKH-----YSQLDTSLKHEAFMLGTSKAK--HDNQGFDLYITTA-------PMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 143 ~~~~~~~-----~~~~~~~l~h~~G~vsma~~~--~~s~gSqFfIt~~-------~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
..++..+ .++...++.|.+|+|||||.+ ||+++|||||+++ +.|+||++|+|||+|++|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~ 160 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILR 160 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHH
Confidence 1111111 123344566789999999976 6999999999998 78999999999999999999985
No 18
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-40 Score=247.48 Aligned_cols=127 Identities=29% Similarity=0.476 Sum_probs=116.1
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCC--------cCCceEEEeecCeEEEecccCCCCCCccccccccccc
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGR--------LKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYS 151 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~ 151 (206)
+++...+.|||.||||.|.+|+|++||++.|+++| |++++||||+++|||||||+-.+++.+..++++..+.
T Consensus 17 v~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~ 96 (177)
T KOG0879|consen 17 VAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFP 96 (177)
T ss_pred EeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCC
Confidence 45667889999999999999999999999999886 9999999999999999999987666666666666777
Q ss_pred cCCCCCCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 152 QLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 152 ~~~~~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
++++.++|+ +|+|||||+++++||.|||||.....|||++|+|||+|++|+.+++
T Consensus 97 DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~r 152 (177)
T KOG0879|consen 97 DENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMR 152 (177)
T ss_pred CcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhh
Confidence 888999998 9999999999999999999999999999999999999999998763
No 19
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.9e-38 Score=253.01 Aligned_cols=125 Identities=34% Similarity=0.527 Sum_probs=107.7
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHhhhC--C------CcCCceEEEeecCeEEEecccC-CCCCCccccccccccc
Q 047545 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLCQR--G------RLKGMLFRHIIKHYVIQAGDID-KLGSIEDWTTRGKHYS 151 (206)
Q Consensus 81 ~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~--g------~Y~g~~f~Rv~~~f~iq~Gd~~-~~~~~~~~~~~~~~~~ 151 (206)
.+..++.|+|+||||.+.||++|+||++||++ + ||+++.||||+++|+||+||+. +++.++...++..+.
T Consensus 8 ~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~- 86 (164)
T cd01926 8 TIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFP- 86 (164)
T ss_pred eECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccC-
Confidence 34457899999999999999999999999983 4 8999999999999999999986 445544433344444
Q ss_pred cCCCCCCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 152 QLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 152 ~~~~~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
++...++|. +|+|+||+.++++++|||||++++.|+||++|+|||||++|||||+
T Consensus 87 ~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~ 142 (164)
T cd01926 87 DENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVK 142 (164)
T ss_pred CCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHH
Confidence 445678885 9999999999999999999999999999999999999999999985
No 20
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2e-38 Score=257.00 Aligned_cols=125 Identities=34% Similarity=0.573 Sum_probs=107.2
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHhhh---------CCCcCCceEEEeecCeEEEecccCC-CCCCcccccccccc
Q 047545 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLCQ---------RGRLKGMLFRHIIKHYVIQAGDIDK-LGSIEDWTTRGKHY 150 (206)
Q Consensus 81 ~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~---------~g~Y~g~~f~Rv~~~f~iq~Gd~~~-~~~~~~~~~~~~~~ 150 (206)
.+..++.|+|+||||.+.||++|+||++||+ .+||+|+.||||+|+|+|||||+.. .+.++...++..+
T Consensus 23 ~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~- 101 (183)
T PTZ00060 23 SIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKF- 101 (183)
T ss_pred EECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCccccccc-
Confidence 4456778999999999999999999999997 4699999999999999999999874 3444433333334
Q ss_pred ccCCCCCCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 151 SQLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 151 ~~~~~~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
+++...++|. +|+|+|++.++++++|||||++++.|+||++|+|||+|++|||||+
T Consensus 102 ~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~ 158 (183)
T PTZ00060 102 TDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVR 158 (183)
T ss_pred CCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHH
Confidence 3445678887 8999999999999999999999999999999999999999999985
No 21
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=8.3e-38 Score=253.88 Aligned_cols=121 Identities=31% Similarity=0.454 Sum_probs=103.9
Q ss_pred ecceeEEEEEcCCCChHHHHHHHHhhhCCC--------cCCceEEEeecCeEEEecccC-CCCCCccccccccccccCCC
Q 047545 85 THKGSITVELFKDSSPDVVDEFIDLCQRGR--------LKGMLFRHIIKHYVIQAGDID-KLGSIEDWTTRGKHYSQLDT 155 (206)
Q Consensus 85 t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~g~~f~Rv~~~f~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~ 155 (206)
++.|+|+||||.+.+|+||+||++||++++ |+++.||||+++|+|||||+. +++.++...++..+.+| ..
T Consensus 30 ~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e-~~ 108 (186)
T PLN03149 30 IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDE-NF 108 (186)
T ss_pred cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCc-cc
Confidence 467999999999999999999999998655 999999999999999999985 44555444334444444 45
Q ss_pred CCCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEE-eCccccC
Q 047545 156 SLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVI-KGEDVVQ 206 (206)
Q Consensus 156 ~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi-~G~dvl~ 206 (206)
.+.|. +|+|+|+++++++++|||||++.+.|+||++|+|||+|+ +|||||+
T Consensus 109 ~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~ 161 (186)
T PLN03149 109 IAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVR 161 (186)
T ss_pred ccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHH
Confidence 56676 999999999999999999999999999999999999999 7999985
No 22
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.2e-37 Score=259.99 Aligned_cols=123 Identities=23% Similarity=0.353 Sum_probs=104.5
Q ss_pred EEEEEec-----ceeEEEEEcCCCChHHHHHHHHhhhCC-----------CcCCceEEEeecC-eEEEecccCCCCCCcc
Q 047545 80 YAIIDTH-----KGSITVELFKDSSPDVVDEFIDLCQRG-----------RLKGMLFRHIIKH-YVIQAGDIDKLGSIED 142 (206)
Q Consensus 80 ~~~~~t~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~g~~f~Rv~~~-f~iq~Gd~~~~~~~~~ 142 (206)
.|.++++ .|+|+||||.|.||+||+||+.||++. +|+|+.||||+++ |+||+||+.+.+..
T Consensus 54 rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~g~s-- 131 (249)
T PTZ00221 54 RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFNVS-- 131 (249)
T ss_pred EEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCCCcc--
Confidence 5666655 678999999999999999999999743 3999999999986 89999998754322
Q ss_pred ccccccccccCCCCCCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 143 WTTRGKHYSQLDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 143 ~~~~~~~~~~~~~~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
.++..+ +++...++|. +|+|+||+.+||+||||||||+.++||||++|+|||+|++|||||+
T Consensus 132 -~~G~~f-~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~ 194 (249)
T PTZ00221 132 -STGTPI-ADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLE 194 (249)
T ss_pred -CCCCcc-cCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHH
Confidence 223344 4445677886 9999999999999999999999999999999999999999999985
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=5.3e-37 Score=239.48 Aligned_cols=124 Identities=34% Similarity=0.527 Sum_probs=108.9
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCC-CCC
Q 047545 82 IIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSL-KHE 160 (206)
Q Consensus 82 ~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l-~h~ 160 (206)
+++|+.|+|+||||++.||++|+||++||++++|+|+.|||+++++++|+||+...+..+ ......+.+|..... .|.
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 368999999999999999999999999999999999999999999999999998765542 122445556665555 466
Q ss_pred ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 161 AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 161 ~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||+|+
T Consensus 80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~ 125 (146)
T cd00317 80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVD 125 (146)
T ss_pred CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHH
Confidence 9999999998899999999999999999999999999999999985
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=253.07 Aligned_cols=127 Identities=28% Similarity=0.441 Sum_probs=117.4
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhC--CC-cCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCC
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQR--GR-LKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTS 156 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+-+.+-..|||+++|..|..|+|++||..||++ || |+|++||||||.||+||||++++++.++.+++++.++++++.
T Consensus 143 ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfddenf~ 222 (298)
T KOG0111|consen 143 IKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENFT 222 (298)
T ss_pred eeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccccccccee
Confidence 446678899999999999999999999999975 55 999999999999999999999776666677788888889999
Q ss_pred CCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 157 LKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 157 l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
|+|. +|+|||||+++|+|||||||++....|||++|+|||.|++||+||+
T Consensus 223 lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvr 273 (298)
T KOG0111|consen 223 LKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVR 273 (298)
T ss_pred eecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHH
Confidence 9998 9999999999999999999999999999999999999999999973
No 25
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-37 Score=263.84 Aligned_cols=122 Identities=25% Similarity=0.511 Sum_probs=118.0
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCC
Q 047545 79 GYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLK 158 (206)
Q Consensus 79 ~~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (206)
..|++.|+.|+|.||||+.+||++|.||++||..|||+|+.|||++|+|.+|||||+++|+||++.++..|.+|.+++|+
T Consensus 13 gkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~h~Rlr 92 (439)
T KOG0885|consen 13 GKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEFHPRLR 92 (439)
T ss_pred ceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhcCccee
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEe
Q 047545 159 HE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIK 200 (206)
Q Consensus 159 h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~ 200 (206)
+. +|+|+|||.+.+.||||||+||+++||||++|++||+|+-
T Consensus 93 f~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtG 135 (439)
T KOG0885|consen 93 FNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTG 135 (439)
T ss_pred eeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecc
Confidence 97 9999999999899999999999999999999999999983
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=9.7e-36 Score=234.38 Aligned_cols=127 Identities=35% Similarity=0.599 Sum_probs=109.5
Q ss_pred EEEEEec-ceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCc--cccccccccccCC-C
Q 047545 80 YAIIDTH-KGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIE--DWTTRGKHYSQLD-T 155 (206)
Q Consensus 80 ~~~~~t~-~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~--~~~~~~~~~~~~~-~ 155 (206)
.+.++|+ .|+|+||||++.||++|+||++||+.++|+|+.|||++++++||+|++.+.+..+ ....+..+.+|.. .
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~ 80 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPS 80 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTT
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccc
Confidence 3678996 9999999999999999999999999999999999999999999999988765421 1112223455553 4
Q ss_pred CCCCCceEEEEecCC--CCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 156 SLKHEAFMLGTSKAK--HDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 156 ~l~h~~G~vsma~~~--~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
.+.|.+|+|+|++.+ +++++|||||++++.|+||++|+|||+|++|||+|+
T Consensus 81 ~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~ 133 (155)
T PF00160_consen 81 LLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLD 133 (155)
T ss_dssp SSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHH
T ss_pred cccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHH
Confidence 688999999999965 789999999999999999999999999999999985
No 27
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=243.15 Aligned_cols=126 Identities=24% Similarity=0.359 Sum_probs=115.4
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccc------c-cccc
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRG------K-HYSQ 152 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~------~-~~~~ 152 (206)
.|+++|+.|+|+|+||.+++|.+|.||++||+..||+.|.||.|..+|++|+|||+|+|.||.+.++- . |..|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 48899999999999999999999999999999999999999999999999999999999988765432 2 3356
Q ss_pred CCCCCCCC-ceEEEEecCCCCCCcceEEEEcCCC-CCCCCCccEEEEEEeCcccc
Q 047545 153 LDTSLKHE-AFMLGTSKAKHDNQGFDLYITTAPM-PDLSEKLIVFGRVIKGEDVV 205 (206)
Q Consensus 153 ~~~~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~-~~Ld~~~~VFG~Vi~G~dvl 205 (206)
..+.++|. .|+|||+++|.|.+||||||||+++ ..||++|+|||+|++|||+|
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl 136 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTL 136 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHH
Confidence 77899998 8999999999999999999999986 69999999999999999987
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-30 Score=205.11 Aligned_cols=126 Identities=31% Similarity=0.471 Sum_probs=110.0
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHhhhCC--C-cCCceEEE---eecCeEEEecccCCCCCCccccccccccccCC
Q 047545 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLCQRG--R-LKGMLFRH---IIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLD 154 (206)
Q Consensus 81 ~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g--~-Y~g~~f~R---v~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~ 154 (206)
.+-..+.|+++++||.|..|+|++||..||++. + |+++.||| .+++||+||||.+...+.+..+++++.+++++
T Consensus 11 ~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~Den 90 (167)
T KOG0865|consen 11 AIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDEN 90 (167)
T ss_pred eecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCcC
Confidence 344688999999999999999999999999843 3 99999999 33479999999985544444445666678888
Q ss_pred CCCCCC-ceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 155 TSLKHE-AFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 155 ~~l~h~-~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
+.++|. +|+|+|||.+||+|+|||||++....|||++|+|||+|.+||++|+
T Consensus 91 FilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~ 143 (167)
T KOG0865|consen 91 FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVE 143 (167)
T ss_pred cEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhh
Confidence 999998 8999999999999999999999999999999999999999999985
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.5e-09 Score=97.05 Aligned_cols=206 Identities=33% Similarity=0.345 Sum_probs=155.9
Q ss_pred CCCCCHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHhhccccccccccccccccccc--cccccccccCCCCCCC
Q 047545 1 MAKIKPQALLLQSKRKKGPNRISVTSIVLFTLIVVLALCFLFSSYKHWSQRSSFQAENQELV--VEDENSFMDSKKSDLP 78 (206)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 78 (206)
||+|+.+++..+.++++++.+++..-++--.+..+++++.++++...|..++...+.-..-. .++-....-..-...|
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 78999999999999999999977676777667777777788888888877664432211111 1221222233445566
Q ss_pred cEEEEEecce----eEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCC-C---cccccccc--
Q 047545 79 GYAIIDTHKG----SITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGS-I---EDWTTRGK-- 148 (206)
Q Consensus 79 ~~~~~~t~~G----~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~-~---~~~~~~~~-- 148 (206)
..+.+.+..| .|.++++.+-.|.-++-|..+|+.+++++..|.||...+++|.||..-... + ..|+..++
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 6789999999 999999999999999999999999999999999999999999999653222 2 23433322
Q ss_pred cc-ccCCCCCCCCceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 149 HY-SQLDTSLKHEAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 149 ~~-~~~~~~l~h~~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
++ .+.+..++|+.-++.+........+-+|++.-...+-|+.+..|||++.+|-++++
T Consensus 179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred CccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 22 33567789988888888766555678899999888889999999999999888763
No 30
>PRK00969 hypothetical protein; Provisional
Probab=96.85 E-value=0.0071 Score=55.71 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCCCceEEEEec
Q 047545 89 SITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHEAFMLGTSK 168 (206)
Q Consensus 89 ~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h~~G~vsma~ 168 (206)
.+.+||.++. |.++++|+.+.+.|.++= -+....|+.. ....+...++++ ...-.+|+|.+.+
T Consensus 205 y~eve~~~~~-p~s~EH~la~~~~G~f~V---d~~tstfI~d------------~~L~g~~~p~En-~~~R~~GtVTVRt 267 (508)
T PRK00969 205 YVEVELDPGA-PKSVEHFLALLEDGTFEV---DFETSTFIAD------------DRLQGLKIPEEN-FEPRRRGTVTVRT 267 (508)
T ss_pred EEEEEEcCCC-CchHHHHHHHHhCCeEEE---eeeecceEee------------ccccCccCCccc-cCccccceEEEEe
Confidence 4566776655 999999999999986321 1111111111 011112222332 2233589999998
Q ss_pred CCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 169 AKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 169 ~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
.|.++ -.-||--.+-+ -.-.|+|+|+|++|||++|
T Consensus 268 ~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~ 302 (508)
T PRK00969 268 AGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELID 302 (508)
T ss_pred eccCc--eeEEEECCCCC-CCccceeEEEEecceeeee
Confidence 87433 35888887765 3346999999999999985
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.73 E-value=0.012 Score=54.24 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=60.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCCCceEEEEec
Q 047545 89 SITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHEAFMLGTSK 168 (206)
Q Consensus 89 ~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h~~G~vsma~ 168 (206)
.+.+||.++ +|.++++|+.+.+.|.++= -+....|+.. ....+...++++ ...-.+|+|.+.+
T Consensus 202 y~evE~~~~-~p~s~EH~la~~~~G~~~V---d~~tsTfi~d------------~~L~g~~~p~En-~~~R~rGtVTVRn 264 (503)
T TIGR03268 202 YVEVELDPN-APVSVEHFLALMEDGTFRV---DYRTSTFISD------------DSLRGLDKPEEN-IEKRRRGAVTVRN 264 (503)
T ss_pred EEEEEEcCC-CChhHHHHHHHHhCCeEEE---eeeecceEec------------ccccCccCCccc-cCcccceeEEEEe
Confidence 456676555 5999999999999886321 1111111111 001111222332 2233589999999
Q ss_pred CCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 169 AKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 169 ~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
.|.+. -.-||--.+-+ -.-.|+|+|+|+.|||++|
T Consensus 265 ~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid 299 (503)
T TIGR03268 265 SGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELID 299 (503)
T ss_pred eccCc--eeEEEEcCCCC-CCcccceeEEEecceeeee
Confidence 77433 35888887755 3346999999999999986
No 32
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.018 Score=51.64 Aligned_cols=94 Identities=23% Similarity=0.301 Sum_probs=59.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhhhCCC----cCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCCCceEE
Q 047545 89 SITVELFKDSSPDVVDEFIDLCQRGR----LKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHEAFML 164 (206)
Q Consensus 89 ~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h~~G~v 164 (206)
.+.+||.++. |+++++|++|.+.|- |+-.+|--. ........++++..+ ..+|.+
T Consensus 204 y~eve~s~ns-P~saEH~lalmedG~lri~~~tntfis~-------------------~~lq~~~~~~en~d~-RerG~i 262 (512)
T COG4070 204 YFEVELSRNS-PKSAEHFLALMEDGTLRIDVTTNTFISD-------------------DTLQEEKVPEENFDL-RERGAI 262 (512)
T ss_pred EEEEEeCCCC-chhHHHHHHHhhcceEEEEEeccceeec-------------------cccccccCChhhhhh-hhcceE
Confidence 4677777765 999999999998874 222222111 111112223343333 348999
Q ss_pred EEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEeCccccC
Q 047545 165 GTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 165 sma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
...|.|-++ -.-||--.+-+. .-.|.|.|+|++|||++|
T Consensus 263 TvRn~Gvge--GrvYIyRedR~s-s~sHnvVGrV~eGiELid 301 (512)
T COG4070 263 TVRNVGVGE--GRVYIYREDRPS-SLSHNVVGRVIEGIELID 301 (512)
T ss_pred EEEeeeccc--ceEEEEecCCCC-ccccceeeeeecceEEEE
Confidence 998866433 357887766442 235899999999999986
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.41 E-value=0.17 Score=46.74 Aligned_cols=110 Identities=19% Similarity=0.242 Sum_probs=55.6
Q ss_pred cceeEEEEEcCCCChHHHHHHHHhhhCCCcC--CceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCCCCceE
Q 047545 86 HKGSITVELFKDSSPDVVDEFIDLCQRGRLK--GMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLKHEAFM 163 (206)
Q Consensus 86 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~--g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~h~~G~ 163 (206)
..--|.|+||.|.||+|+..|+.+.--.... -..+|=..++.++-=|+... .....+|..+.-.-.+|.
T Consensus 373 ~~~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~~~~---------~k~LiPEN~P~~~V~ag~ 443 (503)
T TIGR03268 373 KDKVIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGNKEL---------AKGLIPENTPEDKVEAGV 443 (503)
T ss_pred hHhEEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccCchh---------ccccCCCCCCCCccccce
Confidence 4457899999999999999999986322111 22444444553332222211 112222322222233666
Q ss_pred EEEecCC-C--CCCcceEEE--EcCCC-CCCCCCccEEEEEEeCcccc
Q 047545 164 LGTSKAK-H--DNQGFDLYI--TTAPM-PDLSEKLIVFGRVIKGEDVV 205 (206)
Q Consensus 164 vsma~~~-~--~s~gSqFfI--t~~~~-~~Ld~~~~VFG~Vi~G~dvl 205 (206)
++|-|.. + +.-|-.|-= -++|+ ..+++ -.++|+|++++|.|
T Consensus 444 IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~L 490 (503)
T TIGR03268 444 IGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERL 490 (503)
T ss_pred EeeechhhhcCceEEEEccCCcccCCCCCCccC-cceEEEecCChhHh
Confidence 6665521 1 111111000 11332 23555 45669999999876
No 34
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=92.65 E-value=0.23 Score=38.90 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=29.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecC--eEEEecccC
Q 047545 87 KGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKH--YVIQAGDID 135 (206)
Q Consensus 87 ~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~--f~iq~Gd~~ 135 (206)
.-.++.+|..|.||+||+.|.+.. =|.+..+|-...+ .++.-++..
T Consensus 7 g~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~~~ 54 (147)
T PF12903_consen 7 GVSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPDFD 54 (147)
T ss_dssp TEEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE--S
T ss_pred CeEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCCcC
Confidence 447889999999999999999976 2556666665554 355555543
No 35
>PRK00969 hypothetical protein; Provisional
Probab=92.63 E-value=1.3 Score=41.23 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=65.7
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHhhhCCCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCCCC
Q 047545 79 GYAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRGRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTSLK 158 (206)
Q Consensus 79 ~~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (206)
....+.|++|.|+|||- .....+.-++..++. |.|...|=-.++ -+-.|-+..+ +. .......
T Consensus 51 ~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~-~vAfGp~~s~-----------l~-p~~~~~~ 113 (508)
T PRK00969 51 KKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRS-AVAFGPFESD-----------LE-PSREEYE 113 (508)
T ss_pred ceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEecccc-ceeEcccccC-----------cc-cccCcce
Confidence 45788999999999999 445566677766655 566665544332 2333322111 11 1111223
Q ss_pred CCceEEEEecCCCCCCcceEEEEcCCCC---CCCCCccEEEEEEeCccccC
Q 047545 159 HEAFMLGTSKAKHDNQGFDLYITTAPMP---DLSEKLIVFGRVIKGEDVVQ 206 (206)
Q Consensus 159 h~~G~vsma~~~~~s~gSqFfIt~~~~~---~Ld~~~~VFG~Vi~G~dvl~ 206 (206)
+.++-|.+.-+|-+...+.+-|...+.. -+... -+||+|+.|..+|+
T Consensus 114 y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~-gv~grVi~Gk~vl~ 163 (508)
T PRK00969 114 YERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPND-GVIGRVVGGKRVLD 163 (508)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCC-CceEEEccchhhHh
Confidence 4577777777765555566666655522 12122 89999999998874
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.93 Score=40.97 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred ceeEEEEEcCCCChHHHHHHHHhhh
Q 047545 87 KGSITVELFKDSSPDVVDEFIDLCQ 111 (206)
Q Consensus 87 ~G~i~ieL~~~~aP~t~~nF~~L~~ 111 (206)
.--|.||||.+.||.++..|+.+..
T Consensus 375 dkiieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 375 DKIIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred hhEEEEEecCCCCchhhHHHHhhcc
Confidence 3468999999999999999999864
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=66.78 E-value=51 Score=24.61 Aligned_cols=95 Identities=15% Similarity=0.052 Sum_probs=50.1
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHhhhC----CCcCCceEEEeecCeEEEecccCCCCCCccccccccccccCCCC
Q 047545 81 AIIDTHKGSITVELFKDSSPDVVDEFIDLCQR----GRLKGMLFRHIIKHYVIQAGDIDKLGSIEDWTTRGKHYSQLDTS 156 (206)
Q Consensus 81 ~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~----g~Y~g~~f~Rv~~~f~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+.+......+..+|+.. .|++.|++..-- ..|-+-.++.. + .....++...
T Consensus 3 I~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~E~y~~~-p---------------------~~l~~~~~~~ 57 (120)
T PF04126_consen 3 IKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGNEKYFSL-P---------------------LKLPTEENPR 57 (120)
T ss_dssp EEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTTEEEEE--S--------------------------SSSEE
T ss_pred EEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCceEEEeC-C---------------------CCCCcccCcc
Confidence 34455577899999998 688999887621 12322111111 1 0011011111
Q ss_pred CCCCceEEEEecCCCCCCcceEEEEcCCCC-------CCCCCccEEEEEEeCcccc
Q 047545 157 LKHEAFMLGTSKAKHDNQGFDLYITTAPMP-------DLSEKLIVFGRVIKGEDVV 205 (206)
Q Consensus 157 l~h~~G~vsma~~~~~s~gSqFfIt~~~~~-------~Ld~~~~VFG~Vi~G~dvl 205 (206)
-.-..|-|+.-..+ .-|-|-+++.| .+-....++|||.+|.+.+
T Consensus 58 ~~~~~GDi~Yw~pg-----~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l 108 (120)
T PF04126_consen 58 SSVEAGDIAYWPPG-----GALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENL 108 (120)
T ss_dssp SSB-TTEEEEECCC-----TEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGG
T ss_pred ccccCceEEEeCCC-----CEEEEEecCcccccccccccCCcceEEEEECCCHHHH
Confidence 12246777776544 23777777774 3456789999999999876
No 38
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=61.64 E-value=12 Score=31.26 Aligned_cols=15 Identities=0% Similarity=-0.161 Sum_probs=6.1
Q ss_pred CCCcchhhHHHHHHH
Q 047545 18 GPNRISVTSIVLFTL 32 (206)
Q Consensus 18 ~~~~~~~~~~~~~~l 32 (206)
|+..+.+..+|.+++
T Consensus 10 RK~N~iLNiaI~IV~ 24 (217)
T PF07423_consen 10 RKTNKILNIAIGIVS 24 (217)
T ss_pred hhhhhhHHHHHHHHH
Confidence 333344444444333
No 39
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=55.62 E-value=11 Score=24.98 Aligned_cols=8 Identities=13% Similarity=0.331 Sum_probs=3.0
Q ss_pred HhhcCCCc
Q 047545 14 KRKKGPNR 21 (206)
Q Consensus 14 ~~~~~~~~ 21 (206)
++|+|+++
T Consensus 24 ~~r~RrRr 31 (60)
T PF06072_consen 24 ASRRRRRR 31 (60)
T ss_pred HHHHHHHH
Confidence 33333333
No 40
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=44.92 E-value=1.4e+02 Score=24.40 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=25.8
Q ss_pred EEEEEecceeEEEEEcC-----CCChHHHHHHHHhhhC
Q 047545 80 YAIIDTHKGSITVELFK-----DSSPDVVDEFIDLCQR 112 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~-----~~aP~t~~nF~~L~~~ 112 (206)
......-+|+.++-.|. |+||.+.....++.+.
T Consensus 59 ~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~ 96 (207)
T COG1999 59 PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKK 96 (207)
T ss_pred EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHH
Confidence 35666678999888876 8899999888877754
No 41
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=35.84 E-value=47 Score=21.93 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=8.1
Q ss_pred cCCCcchhhHHHHHH
Q 047545 17 KGPNRISVTSIVLFT 31 (206)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (206)
|++...++.++++++
T Consensus 2 r~k~~~~mtriVLLI 16 (59)
T PF11119_consen 2 RRKKNSRMTRIVLLI 16 (59)
T ss_pred CCcccchHHHHHHHH
Confidence 344445566666655
No 42
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=35.75 E-value=29 Score=28.93 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=12.7
Q ss_pred HHHHHHHhhhCCCcCCceEEEeec
Q 047545 102 VVDEFIDLCQRGRLKGMLFRHIIK 125 (206)
Q Consensus 102 t~~nF~~L~~~g~Y~g~~f~Rv~~ 125 (206)
...-|+.+.+. +|..||=||+
T Consensus 71 ~~kQFiTv~Tk---~gn~FyliID 91 (218)
T PF14283_consen 71 DGKQFITVTTK---SGNTFYLIID 91 (218)
T ss_pred CCcEEEEEEec---CCCEEEEEEe
Confidence 55556655544 3677777765
No 43
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=34.91 E-value=1e+02 Score=26.22 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=21.8
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHhhhCC
Q 047545 80 YAIIDTHKGSITVELFKDSSPDVVDEFIDLCQRG 113 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g 113 (206)
.|.+-|++| ...||..=+||.++++.+
T Consensus 44 VVELfTSQG-------CsSCPPAd~~l~k~a~~~ 70 (261)
T COG5429 44 VVELFTSQG-------CSSCPPADANLAKLADDP 70 (261)
T ss_pred EEEEeecCC-------cCCCChHHHHHHHhccCC
Confidence 566667776 468999999999999876
No 44
>PHA03001 putative virion core protein; Provisional
Probab=32.67 E-value=2.3e+02 Score=21.75 Aligned_cols=47 Identities=13% Similarity=0.370 Sum_probs=33.5
Q ss_pred EEEEEecceeEEEEEc--CCCCh------HHHHHHHHhhhCC-CcCCceEEEeecC
Q 047545 80 YAIIDTHKGSITVELF--KDSSP------DVVDEFIDLCQRG-RLKGMLFRHIIKH 126 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~--~~~aP------~t~~nF~~L~~~g-~Y~g~~f~Rv~~~ 126 (206)
.+.++|..||+.+... ++.+| +++++|++...+= .-+-++|+-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 5 NIFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 3678999997776664 34455 4778998877541 1478899999887
No 45
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=31.45 E-value=26 Score=24.90 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.5
Q ss_pred HhhcCCCcch
Q 047545 14 KRKKGPNRIS 23 (206)
Q Consensus 14 ~~~~~~~~~~ 23 (206)
||.||+...+
T Consensus 6 kK~K~k~~l~ 15 (96)
T PF13800_consen 6 KKAKRKSRLR 15 (96)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 46
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=31.16 E-value=92 Score=29.98 Aligned_cols=6 Identities=17% Similarity=0.041 Sum_probs=2.4
Q ss_pred eEEEEc
Q 047545 177 DLYITT 182 (206)
Q Consensus 177 qFfIt~ 182 (206)
.+.|-+
T Consensus 314 r~vI~I 319 (596)
T PLN02745 314 RYVIYV 319 (596)
T ss_pred eEEEEE
Confidence 344433
No 47
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=30.44 E-value=1.4e+02 Score=26.00 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=16.8
Q ss_pred CCCCcEEEEEecc-------eeEEEEEcCCCChHHHHHHHHhhhC
Q 047545 75 SDLPGYAIIDTHK-------GSITVELFKDSSPDVVDEFIDLCQR 112 (206)
Q Consensus 75 ~~~~~~~~~~t~~-------G~i~ieL~~~~aP~t~~nF~~L~~~ 112 (206)
..+.++|+++-+. |-.-+.+.+|- -..+.+..++.
T Consensus 47 k~PKRVVVLE~SFaDaLaal~v~PVGIADDn---k~krI~k~Vr~ 88 (310)
T COG4594 47 KTPKRVVVLELSFADALAALGVTPVGIADDN---KKKRILKDVRD 88 (310)
T ss_pred CCCceEEEEEecHHHHHHHcCCeeeeeccCc---hhhhhhHHHHh
Confidence 3344556665543 33333343332 34466666654
No 48
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=28.13 E-value=1.9e+02 Score=22.09 Aligned_cols=47 Identities=9% Similarity=0.295 Sum_probs=34.1
Q ss_pred EEEEEecceeEEEEEcCCCCh---------HHHHHHHHhhhCC-CcCCceEEEeecC
Q 047545 80 YAIIDTHKGSITVELFKDSSP---------DVVDEFIDLCQRG-RLKGMLFRHIIKH 126 (206)
Q Consensus 80 ~~~~~t~~G~i~ieL~~~~aP---------~t~~nF~~L~~~g-~Y~g~~f~Rv~~~ 126 (206)
.+.++|..||+.+....+.++ ++++.|++..+.= .-+-+.|+-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 367899999888877755433 3678898877541 1478899999886
No 49
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.77 E-value=2.5e+02 Score=22.12 Aligned_cols=10 Identities=0% Similarity=0.052 Sum_probs=5.1
Q ss_pred eEEEEEcCCC
Q 047545 89 SITVELFKDS 98 (206)
Q Consensus 89 ~i~ieL~~~~ 98 (206)
.|.+++.+..
T Consensus 92 ~i~l~~~d~~ 101 (170)
T PRK05696 92 KVQLMVRGSD 101 (170)
T ss_pred EEEEEECCHH
Confidence 4555555443
No 50
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.52 E-value=2.2e+02 Score=22.93 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=3.0
Q ss_pred EEEEEcC
Q 047545 90 ITVELFK 96 (206)
Q Consensus 90 i~ieL~~ 96 (206)
|.+++..
T Consensus 109 i~Le~~~ 115 (182)
T PRK08455 109 ISLELSN 115 (182)
T ss_pred EEEEECC
Confidence 4444443
No 51
>PHA00407 phage lambda Rz1-like protein
Probab=26.33 E-value=2e+02 Score=20.10 Aligned_cols=10 Identities=10% Similarity=-0.057 Sum_probs=3.7
Q ss_pred CHHHHHHHHH
Q 047545 5 KPQALLLQSK 14 (206)
Q Consensus 5 ~~~~~~~~~~ 14 (206)
|...+.++++
T Consensus 5 R~lr~~r~lr 14 (84)
T PHA00407 5 RKLRLRRILR 14 (84)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 52
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=26.11 E-value=56 Score=23.13 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHhhcCCCcchh
Q 047545 4 IKPQALLLQSKRKKGPNRISV 24 (206)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (206)
|.++...++..|++++....+
T Consensus 1 i~~~p~f~~L~r~r~r~~~~l 21 (91)
T PF04341_consen 1 ILRSPEFQELVRRRRRLAWPL 21 (91)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 344555666665555554443
No 53
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=25.30 E-value=55 Score=29.36 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCceEEEEecCCCCCCcceEEEEcCCCCCCCCCccEEEEEEe-Ccccc
Q 047545 159 HEAFMLGTSKAKHDNQGFDLYITTAPMPDLSEKLIVFGRVIK-GEDVV 205 (206)
Q Consensus 159 h~~G~vsma~~~~~s~gSqFfIt~~~~~~Ld~~~~VFG~Vi~-G~dvl 205 (206)
-.+|.|.+.|....-..-+.-|++.+.| -|++..|.|+|.+ -+.+|
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp-~d~rvNViG~V~~~d~~LL 344 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLP-ADERVNVIGRVDEEDLPLL 344 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGG
T ss_pred ccCceEEEeCCCccccccEEEEEcccCC-CCCCeeEEEEECHHHHHHH
Confidence 3489999998755556678999999988 5999999999996 45554
No 54
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=24.63 E-value=61 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccc
Q 047545 23 SVTSIVLFTLIVVLALCFLFSSYKH 47 (206)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~ 47 (206)
++...+.+.|++++++|++.|.+..
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvwhw 33 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVWHW 33 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEEEe
Confidence 3445555666667777777776553
No 55
>PRK10053 hypothetical protein; Provisional
Probab=23.20 E-value=2.3e+02 Score=21.66 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=11.5
Q ss_pred EEEEecceeEEEEEcCCC
Q 047545 81 AIIDTHKGSITVELFKDS 98 (206)
Q Consensus 81 ~~~~t~~G~i~ieL~~~~ 98 (206)
-+|.-..|.|.+|+..+.
T Consensus 79 Y~F~D~tG~I~VeID~~~ 96 (130)
T PRK10053 79 YVFRDKSGEINVIIPAAV 96 (130)
T ss_pred EEEECCCCcEEEEeCHHH
Confidence 345556677777777663
No 56
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.63 E-value=72 Score=23.98 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=5.4
Q ss_pred CCCcCCc-eEEE
Q 047545 112 RGRLKGM-LFRH 122 (206)
Q Consensus 112 ~g~Y~g~-~f~R 122 (206)
.++||.. .||-
T Consensus 75 ~g~Yd~~g~~~~ 86 (130)
T PF12273_consen 75 PGYYDQQGNFHP 86 (130)
T ss_pred CCCCCCCCCCCC
Confidence 4556554 4443
No 57
>PHA00350 putative assembly protein
Probab=20.56 E-value=6.6e+02 Score=22.95 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=33.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhhhCCC----cCCceEEEeecC--eEEEecc
Q 047545 89 SITVELFKDSSPDVVDEFIDLCQRGR----LKGMLFRHIIKH--YVIQAGD 133 (206)
Q Consensus 89 ~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~g~~f~Rv~~~--f~iq~Gd 133 (206)
.|.||+....-+-..-+.+.|.+.+| |+.|...+..-+ +++-|..
T Consensus 328 ~v~~ev~~p~g~~~~l~~~dL~~~gy~fev~~~C~~~l~w~d~~~~vtC~~ 378 (399)
T PHA00350 328 HVYIEAYTPRGFSFSLDDIDLEKMGYQFEALDDCVYRLTWESNSRVVTCIP 378 (399)
T ss_pred eEEEEEECCCCceEeccHHHHHHCCceEEEeccceEEEEEccceeEEEeCc
Confidence 36799999887766577888988886 899988776543 5666663
Done!