BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047549
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 148/368 (40%), Gaps = 64/368 (17%)
Query: 103 FSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAI 162
S NY G +PS LG+ SKL+ + + L G IP ++ +LE + L N L+G I
Sbjct: 422 LSFNYLSG--TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 163 SNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYN 222
+G+ N T+LN L+N N L+G +P+++
Sbjct: 480 PSGLSNCTNLNWISLSN--------NRLTGEIPKWI------------------------ 507
Query: 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL---ALVSVSY 279
L NL + L NN+F+G+ P L C L + L+ N I + ++ ++
Sbjct: 508 -GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Query: 280 XXXXXXXXXXXTGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAF--------- 330
G G NL + + N I+S +
Sbjct: 567 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 331 --QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSY 388
+++ L + + G IP +G + L +L+LG N I+G IP +G++ L +DLS
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 389 NSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIY 448
N + G P+ L L + N N L P +PE + + PPA +
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSN----NNLSGP--IPE---------MGQFETFPPAKF 731
Query: 449 LRNNGLNG 456
L N GL G
Sbjct: 732 LNNPGLCG 739
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 112/437 (25%), Positives = 165/437 (37%), Gaps = 101/437 (23%)
Query: 124 LQTFRAGFSYLSGSIPDDVSAAA-SLEDISLPVNQLSGAI-----------------SNG 165
LQ + +G IPD +S A +L + L N GA+ +N
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 166 VVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYNFS- 224
L + K+ LK L L N SG LP+ L DLS+ NFS
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL--------DLSSNNFSG 379
Query: 225 ---------TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALV 275
+ L + L NN FTG P TL++C L ++ LS N + I P+ +L
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PS--SLG 436
Query: 276 SVSYXXXXXXXXXXXTGAI-GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334
S+S G I LM K L L+L F++ +I NL
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL---DFNDLT---GEIPSGLSNCTNLN 490
Query: 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGE 394
+ + N + G+IP W+G+L+ L +L L +N +G IP LG+ +L ++DL+ N +G
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 395 FPK--------------------------------------EFCGLPALALQEAKNRADG 416
P EF G+ + L R
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 417 NQLQL-------PLFVPETKCALYNQQYNKLFSLPPA----------IYLRNNGLNGSIP 459
N P F + YN L P + L +N ++GSIP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 460 IEIGNVMFLHVLDLSLN 476
E+G++ L++LDLS N
Sbjct: 671 DEVGDLRGLNILDLSSN 687
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 162/402 (40%), Gaps = 82/402 (20%)
Query: 102 DFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAA---ASLEDISLPVNQL 158
D S N G + LG+ S L+ + L P VS SLE + L N +
Sbjct: 103 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSI 160
Query: 159 SGA------ISNGVVNLTSL-----------NIGKLANLKSLKLHTNSLSGFLPQFLMXX 201
SGA +S+G L L ++ + NL+ L + +N+ S +P
Sbjct: 161 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP------ 214
Query: 202 XXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN 261
F GD SA L +D+ N +G F +++C L + +S N
Sbjct: 215 ------------FLGDCSA--------LQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 262 KIEEQISPTILALVSVSYXXXXXXXXXXXTGAIGILM--GCKNLRMLLLCKIFFHEAIP- 318
+ I P L L S+ Y TG I + C L L L F+ A+P
Sbjct: 255 QFVGPIPP--LPLKSLQY---LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 319 --DENQITISSYAFQNLVVLGIGNCEIKGQIP-TWLGKLKKLQVLDLGSNQITGPIPGWL 375
+ S N G++P L K++ L+VLDL N+ +G +P L
Sbjct: 310 FFGSCSLLESLALSSN---------NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Query: 376 GNM-PNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYN 434
N+ +L +DLS N+ SG C P LQE + +G ++P + + C+
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL--SNCS--- 415
Query: 435 QQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLN 476
+L SL +L N L+G+IP +G++ L L L LN
Sbjct: 416 ----ELVSL----HLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 107/273 (39%), Gaps = 71/273 (26%)
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
S+++GS+ +ASL + L N LSG V LTSL G + LK L + +N+L
Sbjct: 84 SHINGSV-SGFKCSASLTSLDLSRNSLSGP----VTTLTSL--GSCSGLKFLNVSSNTLD 136
Query: 192 GFLPQFLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLT--- 248
F G +S L++L +DL N+ +G+ +
Sbjct: 137 ----------------------FPGKVSGG--LKLNSLEVLDLSANSISGANVVGWVLSD 172
Query: 249 SCMFLTAIRLSGNKIEEQISPTILALVSVSYXXXXXXXXXXXTGAIGILMGCKNLRMLLL 308
C L + +SGNKI V VS C NL L +
Sbjct: 173 GCGELKHLAISGNKISGD--------VDVSR--------------------CVNLEFLDV 204
Query: 309 CKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368
F IP + A Q+L + G ++ G + +L++L++ SNQ
Sbjct: 205 SSNNFSTGIPFLGDCS----ALQHLDISG---NKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 369 GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCG 401
GPIP + +L Y+ L+ N +GE P G
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 288
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 102 DFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA 161
D S+N G+ +P +G+ L G + +SGSIPD+V L + L N+L G
Sbjct: 635 DMSYNMLSGY--IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 162 ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197
I + LT L + L N+LSG +P+
Sbjct: 693 IPQAMSALTM--------LTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 148/368 (40%), Gaps = 64/368 (17%)
Query: 103 FSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAI 162
S NY G +PS LG+ SKL+ + + L G IP ++ +LE + L N L+G I
Sbjct: 425 LSFNYLSG--TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 163 SNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYN 222
+G+ N T+LN L+N N L+G +P+++
Sbjct: 483 PSGLSNCTNLNWISLSN--------NRLTGEIPKWI------------------------ 510
Query: 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL---ALVSVSY 279
L NL + L NN+F+G+ P L C L + L+ N I + ++ ++
Sbjct: 511 -GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Query: 280 XXXXXXXXXXXTGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAF--------- 330
G G NL + + N I+S +
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 331 --QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSY 388
+++ L + + G IP +G + L +L+LG N I+G IP +G++ L +DLS
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 389 NSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIY 448
N + G P+ L L + N N L P +PE + + PPA +
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSN----NNLSGP--IPE---------MGQFETFPPAKF 734
Query: 449 LRNNGLNG 456
L N GL G
Sbjct: 735 LNNPGLCG 742
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 112/437 (25%), Positives = 165/437 (37%), Gaps = 101/437 (23%)
Query: 124 LQTFRAGFSYLSGSIPDDVSAAA-SLEDISLPVNQLSGAI-----------------SNG 165
LQ + +G IPD +S A +L + L N GA+ +N
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 166 VVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYNFS- 224
L + K+ LK L L N SG LP+ L DLS+ NFS
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL--------DLSSNNFSG 382
Query: 225 ---------TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALV 275
+ L + L NN FTG P TL++C L ++ LS N + I P+ +L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PS--SLG 439
Query: 276 SVSYXXXXXXXXXXXTGAI-GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334
S+S G I LM K L L+L F++ +I NL
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL---DFNDLT---GEIPSGLSNCTNLN 493
Query: 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGE 394
+ + N + G+IP W+G+L+ L +L L +N +G IP LG+ +L ++DL+ N +G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 395 FPK--------------------------------------EFCGLPALALQEAKNRADG 416
P EF G+ + L R
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 417 NQLQL-------PLFVPETKCALYNQQYNKLFSLPPA----------IYLRNNGLNGSIP 459
N P F + YN L P + L +N ++GSIP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 460 IEIGNVMFLHVLDLSLN 476
E+G++ L++LDLS N
Sbjct: 674 DEVGDLRGLNILDLSSN 690
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 162/402 (40%), Gaps = 82/402 (20%)
Query: 102 DFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAA---SLEDISLPVNQL 158
D S N G + LG+ S L+ + L P VS SLE + L N +
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSI 163
Query: 159 SGA------ISNGVVNLTSL-----------NIGKLANLKSLKLHTNSLSGFLPQFLMXX 201
SGA +S+G L L ++ + NL+ L + +N+ S +P
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP------ 217
Query: 202 XXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN 261
F GD SA L +D+ N +G F +++C L + +S N
Sbjct: 218 ------------FLGDCSA--------LQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 262 KIEEQISPTILALVSVSYXXXXXXXXXXXTGAIGILM--GCKNLRMLLLCKIFFHEAIP- 318
+ I P L L S+ Y TG I + C L L L F+ A+P
Sbjct: 258 QFVGPIPP--LPLKSLQY---LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 319 --DENQITISSYAFQNLVVLGIGNCEIKGQIP-TWLGKLKKLQVLDLGSNQITGPIPGWL 375
+ S N G++P L K++ L+VLDL N+ +G +P L
Sbjct: 313 FFGSCSLLESLALSSN---------NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 376 GNM-PNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYN 434
N+ +L +DLS N+ SG C P LQE + +G ++P + + C+
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL--SNCS--- 418
Query: 435 QQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLN 476
+L SL +L N L+G+IP +G++ L L L LN
Sbjct: 419 ----ELVSL----HLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 107/273 (39%), Gaps = 71/273 (26%)
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
S+++GS+ +ASL + L N LSG V LTSL G + LK L + +N+L
Sbjct: 87 SHINGSV-SGFKCSASLTSLDLSRNSLSGP----VTTLTSL--GSCSGLKFLNVSSNTLD 139
Query: 192 GFLPQFLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLT--- 248
F G +S L++L +DL N+ +G+ +
Sbjct: 140 ----------------------FPGKVSGG--LKLNSLEVLDLSANSISGANVVGWVLSD 175
Query: 249 SCMFLTAIRLSGNKIEEQISPTILALVSVSYXXXXXXXXXXXTGAIGILMGCKNLRMLLL 308
C L + +SGNKI V VS C NL L +
Sbjct: 176 GCGELKHLAISGNKISGD--------VDVSR--------------------CVNLEFLDV 207
Query: 309 CKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368
F IP + A Q+L + G ++ G + +L++L++ SNQ
Sbjct: 208 SSNNFSTGIPFLGDCS----ALQHLDISG---NKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 369 GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCG 401
GPIP + +L Y+ L+ N +GE P G
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 291
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 102 DFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA 161
D S+N G+ +P +G+ L G + +SGSIPD+V L + L N+L G
Sbjct: 638 DMSYNMLSGY--IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 162 ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197
I + LT L + L N+LSG +P+
Sbjct: 696 IPQAMSALTM--------LTEIDLSNNNLSGPIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 333 LVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392
L + GI N + G IP + KL +L L + ++G IP +L + L +D SYN++S
Sbjct: 81 LYIGGINN--LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 393 GEFPKEFCGLPAL-ALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRN 451
G P LP L + NR G +P++ + ++KLF+ ++ +
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISG-------AIPDSYGS-----FSKLFT---SMTISR 183
Query: 452 NGLNGSIPIEIGNVMFLHVLDLSLN 476
N L G IP N + L +DLS N
Sbjct: 184 NRLTGKIPPTFAN-LNLAFVDLSRN 207
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 107/287 (37%), Gaps = 32/287 (11%)
Query: 10 QACNQIDQETLLSLNFNASNPPL--NWSFSTDCC--LWEGIKCDSEAQ---VTHLWLPDR 62
+ CN D++ LL + + NP +W +TDCC W G+ CD++ Q V +L L
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 63 GLRGSIYPFTGKXXXXXXXXXXXXXXXXXXXXXXXXXXXDFS--HNYFRGHCQ----LPS 116
L YP + H + H +P
Sbjct: 61 NLPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
Query: 117 GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVN----LTSL 172
L L T ++ LSG++P +S+ +L I+ N++SGAI + + TS+
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 173 NI------GKLA------NLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSA 220
I GK+ NL + L N L G DL
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 221 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQI 267
S NL+ +DL NN G+ P LT FL ++ +S N + +I
Sbjct: 240 VGLS--KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 38/178 (21%)
Query: 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEF 395
L I + + G IP +L ++K L LD N ++G +P + ++PNL I N ISG
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 396 PKEFCGLPAL--ALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIY----- 448
P + L ++ ++NR G ++P A + N L ++
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTG---KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 449 ----------------------------LRNNGLNGSIPIEIGNVMFLHVLDLSLNNF 478
LRNN + G++P + + FLH L++S NN
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 107/255 (41%), Gaps = 24/255 (9%)
Query: 125 QTFRAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSL 183
QT+R LSG ++P +SL ++ +N L N +V I KL L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 184 KLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF 243
+ ++SG +P FL G L + S+L NL I N +G+
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAI 165
Query: 244 PLTLTS-CMFLTAIRLSGNKIEEQISPTI----LALVSVSYXXXXXXXXXXXTGAIGILM 298
P + S T++ +S N++ +I PT LA V +S G +L
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS--------RNMLEGDASVLF 217
Query: 299 GC-KNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKL 357
G KN + + L K + D ++ +S +NL L + N I G +P L +LK L
Sbjct: 218 GSDKNTQKIHLAK---NSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 358 QVLDLGSNQITGPIP 372
L++ N + G IP
Sbjct: 271 HSLNVSFNNLCGEIP 285
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 299 GCKNLRMLLLCKIFFH-EAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKL 357
G +L+ L L K F + + +E ++++ L + +I +WLG+L+
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLR-- 408
Query: 358 QVLDLGSNQITGPIPG--WLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
+LDLG N+I + G W G + N+F I LSYN F +P+L
Sbjct: 409 -ILDLGLNEIEQKLSGQEWRG-LRNIFEIYLSYNKYLQLSTSSFALVPSL 456
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 353 KLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
K L LDL N + G +P+L Y+ L YN+I P+ F GL L
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNL 298
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 295 GILMGCKNLRMLLLCKIFFH-EAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK 353
+ G NL+ L L F + +E ++++ L + +I+ +WLG
Sbjct: 357 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 416
Query: 354 LKKLQVLDLGSNQITGPIPG--WLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L +VLDLG N+I + G W G + N+F I LSYN F +P+L
Sbjct: 417 L---EVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSL 466
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 295 GILMGCKNLRMLLLCKIFFH-EAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK 353
+ G NL+ L L F + +E ++++ L + +I+ +WLG
Sbjct: 352 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 411
Query: 354 LKKLQVLDLGSNQITGPIPG--WLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L +VLDLG N+I + G W G + N+F I LSYN F +P+L
Sbjct: 412 L---EVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSL 461
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 295 GILMGCKNLRMLLLCKIFFH-EAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK 353
+ G NL+ L L F + +E ++++ L + +I+ +WLG
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406
Query: 354 LKKLQVLDLGSNQITGPIPG--WLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L +VLDLG N+I + G W G + N+F I LSYN F +P+L
Sbjct: 407 L---EVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSL 456
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 295 GILMGCKNLRMLLLCKIFFHEA-IPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK 353
GI G +L +L + F E +PD +NL L + C+++ PT
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPD------IFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 354 LKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPK 397
L LQVL++ SNQ+ G + +L I L N P+
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 347 IPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406
+P L K L ++DL +N+I+ NM L + LSYN + P+ F GL +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 407 L 407
L
Sbjct: 106 L 106
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 313 FHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372
FH I D +Q T + A ++ L + + + LK L+VL+L N+I
Sbjct: 249 FHN-IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307
Query: 373 GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406
+ NL ++LSYN + + F GLP +A
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 319 DENQI--TISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLG 376
D N++ T S +NL +L I N ++K + LG L KL+VLDL N+IT G L
Sbjct: 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN--TGGLT 169
Query: 377 NMPNLFYIDLS 387
+ + +IDL+
Sbjct: 170 RLKKVNWIDLT 180
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 351 LGKLKKLQVLDLGSNQI-TGPIPGWLGNMPNLFYIDLSYNSI 391
+G+L L+ L++ N I + +P + N+ NL ++DLSYN I
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 351 LGKLKKLQVLDLGSNQI-TGPIPGWLGNMPNLFYIDLSYNSI 391
+G+L L+ L++ N I + +P + N+ NL ++DLSYN I
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 359 VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA-LQEAKNRADGN 417
+LDL +N+IT G N+ NL + L N IS P F L L L +KN+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-- 113
Query: 418 QLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIG 463
+LP +P+T L + N++ + +++ NGLN I +E+G
Sbjct: 114 --ELPEKMPKTLQELRVHE-NEITKVRKSVF---NGLNQMIVVELG 153
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 359 VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA-LQEAKNRADGN 417
+LDL +N+IT G N+ NL + L N IS P F L L L +KN+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-- 113
Query: 418 QLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIG 463
+LP +P+T L + N++ + +++ NGLN I +E+G
Sbjct: 114 --ELPEKMPKTLQELRVHE-NEITKVRKSVF---NGLNQMIVVELG 153
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
+L +L L N +T WL N P L +DLSYN + F + L
Sbjct: 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
+L +L L N +T WL N P L +DLSYN + F + L
Sbjct: 233 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196
IP D+ + ++ L N+L S+G+ G+L +L L+L N L+G P
Sbjct: 22 EIPRDIPLHTT--ELLLNDNELGRISSDGL-------FGRLPHLVKLELKRNQLTGIEPN 72
Query: 197 FLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256
+ ++S F LH L T++L +N + P + LT++
Sbjct: 73 AFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131
Query: 257 RLSGN 261
L+ N
Sbjct: 132 NLASN 136
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390
+NL L + C+++ PT L LQVL++ N + +L +D S N
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
Query: 391 ISGEFPKEFCGLPA 404
I +E P+
Sbjct: 235 IMTSKKQELQHFPS 248
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 7/111 (6%)
Query: 295 GILMGCKNLRMLLLCKIFFHEA-IPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK 353
GI G +L +L + F E +PD +NL L + C+++ PT
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPD------IFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 354 LKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPA 404
L LQVL++ N + +L +D S N I +E P+
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 7/111 (6%)
Query: 295 GILMGCKNLRMLLLCKIFFHEA-IPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK 353
GI G +L +L + F E +PD +NL L + C+++ PT
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPD------IFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 354 LKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPA 404
L LQVL++ N + +L +D S N I +E P+
Sbjct: 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 27/153 (17%)
Query: 134 LSGSIPDDVSAAA---SLEDISLPVNQLSGAISNGVVNLTSLN--------------IGK 176
LS + D+SA + SL+ +S NQ++ + NLT+L + K
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDISVLAK 193
Query: 177 LANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGN 236
L NL+SL N +S P ++ G L++ L NL +DL N
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDLAN 248
Query: 237 NNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISP 269
N + P L+ LT ++L N+I ISP
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISN-ISP 278
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 27/153 (17%)
Query: 134 LSGSIPDDVSAAA---SLEDISLPVNQLSGAISNGVVNLTSLN--------------IGK 176
LS + D+SA + SL+ +S NQ++ + NLT+L + K
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDISVLAK 193
Query: 177 LANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGN 236
L NL+SL N +S P ++ G L++ L NL +DL N
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDLAN 248
Query: 237 NNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISP 269
N + P L+ LT ++L N+I ISP
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISN-ISP 278
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 340 NCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393
NC+ + G QVL L NQIT PG ++ L Y++L+ N ++
Sbjct: 25 NCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,604,479
Number of Sequences: 62578
Number of extensions: 477079
Number of successful extensions: 1133
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 157
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)