Query 047549
Match_columns 479
No_of_seqs 306 out of 4375
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-50 2.9E-55 440.3 34.6 457 13-478 27-535 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.8E-44 1.3E-48 388.3 27.1 412 53-479 141-584 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.7E-36 1.5E-40 280.2 5.3 346 52-416 78-429 (873)
4 KOG4194 Membrane glycoprotein 100.0 8.3E-35 1.8E-39 272.9 6.5 362 77-474 79-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 7.4E-35 1.6E-39 261.9 -11.8 397 53-479 69-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 9.9E-33 2.1E-37 261.0 -4.8 307 51-406 31-342 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 1.6E-31 3.4E-36 252.9 -5.1 312 53-392 56-375 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 7.5E-33 1.6E-37 249.0 -14.1 394 53-478 46-517 (565)
9 KOG0618 Serine/threonine phosp 99.9 1.9E-29 4.2E-34 248.9 -6.6 361 54-441 47-465 (1081)
10 KOG0618 Serine/threonine phosp 99.9 7.1E-27 1.5E-31 230.9 -2.2 380 57-479 3-420 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3.4E-22 7.3E-27 218.5 26.3 331 51-413 531-879 (1153)
12 PRK15387 E3 ubiquitin-protein 99.9 5.7E-22 1.2E-26 201.9 16.9 260 54-372 203-462 (788)
13 KOG4237 Extracellular matrix p 99.9 2.4E-24 5.2E-29 194.1 -0.7 350 51-411 66-496 (498)
14 PLN03210 Resistant to P. syrin 99.9 5.6E-21 1.2E-25 209.0 25.4 330 51-413 557-903 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 2.3E-21 5.1E-26 197.5 18.8 267 96-464 201-467 (788)
16 KOG4237 Extracellular matrix p 99.9 7E-24 1.5E-28 191.1 -1.0 286 87-391 57-358 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 4.8E-20 1E-24 189.1 16.3 332 9-392 57-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 7.6E-20 1.7E-24 187.7 11.7 215 41-291 168-383 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3.1E-19 6.8E-24 170.1 0.5 267 120-390 21-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.3E-19 1.6E-23 167.6 0.2 85 127-215 3-94 (319)
21 KOG0617 Ras suppressor protein 99.6 2.4E-18 5.1E-23 138.3 -4.6 159 75-249 32-194 (264)
22 KOG0617 Ras suppressor protein 99.6 5.2E-18 1.1E-22 136.3 -4.8 156 50-220 31-190 (264)
23 PLN03150 hypothetical protein; 99.5 2.8E-13 6.2E-18 138.9 12.6 130 9-142 366-510 (623)
24 KOG1909 Ran GTPase-activating 99.3 2.9E-13 6.3E-18 121.4 -3.1 112 176-288 90-226 (382)
25 KOG0532 Leucine-rich repeat (L 99.2 5.2E-13 1.1E-17 126.9 -5.1 194 73-286 72-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 9.6E-13 2.1E-17 125.1 -4.0 174 226-479 74-247 (722)
27 KOG3207 Beta-tubulin folding c 99.1 8.5E-12 1.8E-16 115.2 1.0 218 143-368 118-339 (505)
28 KOG3207 Beta-tubulin folding c 99.1 4.9E-12 1.1E-16 116.7 -1.7 192 118-318 142-343 (505)
29 COG4886 Leucine-rich repeat (L 99.1 1E-10 2.2E-15 114.8 7.0 178 122-318 116-294 (394)
30 COG4886 Leucine-rich repeat (L 99.1 1.8E-10 4E-15 113.0 8.6 193 80-291 97-293 (394)
31 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.1E-16 107.6 1.3 135 175-317 281-415 (490)
32 KOG1909 Ran GTPase-activating 99.1 6.7E-12 1.5E-16 112.8 -1.9 242 145-392 29-311 (382)
33 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6.1E-15 95.9 5.8 107 120-240 17-126 (175)
34 PLN03150 hypothetical protein; 99.0 5.1E-10 1.1E-14 115.1 7.7 80 332-411 419-498 (623)
35 PF14580 LRR_9: Leucine-rich r 99.0 3.7E-10 8.1E-15 95.2 5.4 105 203-313 20-125 (175)
36 KOG1259 Nischarin, modulator o 99.0 7.5E-11 1.6E-15 103.9 -0.0 217 53-291 183-415 (490)
37 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.6E-14 74.9 4.1 61 331-391 1-61 (61)
38 KOG0531 Protein phosphatase 1, 98.8 1E-09 2.2E-14 107.9 -0.8 196 177-392 71-268 (414)
39 KOG0531 Protein phosphatase 1, 98.7 1.7E-09 3.8E-14 106.3 -0.3 246 120-396 70-322 (414)
40 PF13855 LRR_8: Leucine rich r 98.7 1.8E-08 3.8E-13 69.8 4.1 59 228-286 2-60 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 3.5E-08 7.5E-13 104.1 6.9 85 142-236 567-651 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.5E-08 3.2E-13 106.8 3.9 125 76-212 523-652 (889)
43 KOG2982 Uncharacterized conser 98.6 4.7E-09 1E-13 92.6 -2.0 109 74-189 43-157 (418)
44 COG5238 RNA1 Ran GTPase-activa 98.5 6.6E-09 1.4E-13 90.6 -3.5 168 174-343 88-284 (388)
45 KOG2120 SCF ubiquitin ligase, 98.4 1.2E-09 2.5E-14 96.4 -9.1 128 53-191 137-273 (419)
46 KOG1859 Leucine-rich repeat pr 98.4 6.1E-09 1.3E-13 102.4 -6.7 127 97-239 165-291 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.3E-13 90.5 -6.3 82 331-414 286-374 (419)
48 KOG2982 Uncharacterized conser 98.3 1.6E-07 3.5E-12 83.1 0.1 84 177-261 70-156 (418)
49 KOG1859 Leucine-rich repeat pr 98.2 3.6E-08 7.9E-13 97.1 -5.6 205 96-313 84-291 (1096)
50 PF08263 LRRNT_2: Leucine rich 98.1 2.7E-06 5.9E-11 53.7 3.3 36 14-49 2-43 (43)
51 COG5238 RNA1 Ran GTPase-activa 98.1 6E-07 1.3E-11 78.6 0.0 166 145-314 29-227 (388)
52 KOG4579 Leucine-rich repeat (L 98.0 7.2E-07 1.6E-11 69.9 -1.6 81 332-414 54-134 (177)
53 PF12799 LRR_4: Leucine Rich r 97.9 8.7E-06 1.9E-10 51.5 3.1 36 356-392 2-37 (44)
54 KOG4579 Leucine-rich repeat (L 97.9 3.8E-07 8.2E-12 71.5 -3.8 66 329-397 75-140 (177)
55 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.6E-10 49.7 3.2 38 331-369 1-38 (44)
56 KOG1644 U2-associated snRNP A' 97.8 7.5E-05 1.6E-09 62.9 6.6 65 247-312 60-124 (233)
57 KOG1644 U2-associated snRNP A' 97.7 7.5E-05 1.6E-09 62.9 6.4 103 146-260 42-149 (233)
58 KOG3665 ZYG-1-like serine/thre 97.6 2.2E-05 4.7E-10 81.1 2.0 139 122-269 122-268 (699)
59 PRK15386 type III secretion pr 97.6 0.00031 6.7E-09 67.1 9.5 32 331-365 156-187 (426)
60 PRK15386 type III secretion pr 97.6 0.00034 7.3E-09 66.9 9.4 33 355-390 156-188 (426)
61 KOG3665 ZYG-1-like serine/thre 97.6 4.3E-05 9.4E-10 79.0 3.1 35 200-237 171-205 (699)
62 KOG4341 F-box protein containi 97.5 1.3E-06 2.8E-11 81.2 -7.6 280 77-366 139-437 (483)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00068 1.5E-08 54.8 7.4 104 174-283 8-111 (129)
64 KOG2739 Leucine-rich acidic nu 97.3 7.6E-05 1.7E-09 65.6 0.5 68 68-135 35-104 (260)
65 PF13306 LRR_5: Leucine rich r 97.2 0.0018 3.9E-08 52.3 8.0 98 174-277 31-128 (129)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00056 1.2E-08 60.2 1.3 40 200-240 63-104 (260)
67 KOG4341 F-box protein containi 96.5 6E-05 1.3E-09 70.4 -6.7 281 123-414 139-437 (483)
68 KOG2123 Uncharacterized conser 96.4 0.00011 2.4E-09 65.0 -5.6 82 200-286 17-99 (388)
69 KOG2123 Uncharacterized conser 96.2 0.00016 3.4E-09 64.1 -5.4 80 175-257 38-123 (388)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0039 8.3E-08 32.7 0.9 21 380-401 1-21 (22)
71 KOG1947 Leucine rich repeat pr 95.2 0.0033 7.1E-08 63.5 -1.4 111 177-287 187-307 (482)
72 KOG1947 Leucine rich repeat pr 95.1 0.002 4.4E-08 65.0 -3.4 130 73-209 185-328 (482)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.017 3.6E-07 30.2 1.2 18 333-351 2-19 (22)
74 KOG4308 LRR-containing protein 92.9 0.0008 1.7E-08 66.7 -10.9 188 204-393 89-304 (478)
75 PF13504 LRR_7: Leucine rich r 92.5 0.086 1.9E-06 25.5 1.3 13 97-109 2-14 (17)
76 KOG4308 LRR-containing protein 89.9 0.0029 6.3E-08 62.8 -10.5 211 180-392 89-331 (478)
77 smart00369 LRR_TYP Leucine-ric 89.8 0.25 5.4E-06 26.9 1.7 21 379-399 2-22 (26)
78 smart00370 LRR Leucine-rich re 89.8 0.25 5.4E-06 26.9 1.7 21 379-399 2-22 (26)
79 KOG0473 Leucine-rich repeat pr 89.2 0.0099 2.1E-07 51.6 -6.3 84 72-159 38-124 (326)
80 KOG0473 Leucine-rich repeat pr 88.4 0.013 2.8E-07 50.9 -6.1 76 329-407 40-115 (326)
81 smart00369 LRR_TYP Leucine-ric 87.3 0.5 1.1E-05 25.6 1.8 19 355-373 2-20 (26)
82 smart00370 LRR Leucine-rich re 87.3 0.5 1.1E-05 25.6 1.8 19 355-373 2-20 (26)
83 KOG3864 Uncharacterized conser 86.8 0.078 1.7E-06 45.2 -2.3 77 53-131 102-185 (221)
84 PF13516 LRR_6: Leucine Rich r 86.4 0.31 6.8E-06 25.9 0.7 17 251-267 2-18 (24)
85 KOG4242 Predicted myosin-I-bin 83.2 5.4 0.00012 39.0 7.7 36 333-368 415-453 (553)
86 KOG3864 Uncharacterized conser 82.3 0.3 6.5E-06 41.8 -0.8 81 332-412 102-185 (221)
87 smart00368 LRR_RI Leucine rich 79.8 1.4 2.9E-05 24.5 1.5 14 466-479 2-15 (28)
88 smart00365 LRR_SD22 Leucine-ri 79.7 1.4 3.1E-05 24.0 1.5 15 465-479 1-15 (26)
89 smart00364 LRR_BAC Leucine-ric 71.3 3 6.6E-05 22.7 1.4 13 97-109 3-15 (26)
90 KOG3763 mRNA export factor TAP 64.9 3 6.4E-05 41.5 1.0 36 250-285 217-254 (585)
91 KOG4242 Predicted myosin-I-bin 64.8 32 0.00069 33.9 7.7 258 122-392 165-453 (553)
92 KOG3763 mRNA export factor TAP 37.2 13 0.00029 37.2 0.5 13 179-191 271-283 (585)
93 smart00367 LRR_CC Leucine-rich 33.0 32 0.00068 18.4 1.4 11 355-365 2-12 (26)
94 TIGR00864 PCC polycystin catio 22.3 52 0.0011 40.1 2.0 32 337-368 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-50 Score=440.29 Aligned_cols=457 Identities=29% Similarity=0.443 Sum_probs=266.2
Q ss_pred ChhhHHHHHHhHhcCCCCC---CCCCCCCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCC
Q 047549 13 NQIDQETLLSLNFNASNPP---LNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLS 89 (479)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~---~~w~~~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~ 89 (479)
.++|+.|+++||+.+.++. ..|....+||.|.||+|+..++|+.|+++++++++.++..+..+++|++|++++|++.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 4578899999999986543 6798788999999999998889999999999999998889999999999999999887
Q ss_pred CcCC-----CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCc
Q 047549 90 FLSP-----SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISN 164 (479)
Q Consensus 90 ~~~~-----~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 164 (479)
+..| ..++|++|++++|.+++ .+|. +.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~--~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTG--SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCcccc--ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 6443 23677777777777654 3332 2345555555555555545555555555555555555555544444
Q ss_pred cccccCCC----------------CCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCC
Q 047549 165 GVVNLTSL----------------NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 228 (479)
Q Consensus 165 ~~~~l~~l----------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (479)
.+.+++.+ .+.++++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.++. .+..+++
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~ 261 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKN 261 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCC
Confidence 33222111 133455566666666666655566666666666666666665544443 4555666
Q ss_pred CcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEc
Q 047549 229 LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLL 308 (479)
Q Consensus 229 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l 308 (479)
|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+..... ..+..+++|+.|++
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L 339 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQL 339 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEEC
Confidence 6666666666655555555556666666666666655555555566666666666665543211 23445556666666
Q ss_pred cCccccccCCCCcccc------------------ccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccc
Q 047549 309 CKIFFHEAIPDENQIT------------------ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGP 370 (479)
Q Consensus 309 ~~n~~~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 370 (479)
++|.+.+.+|...... .....+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 6665555444322200 0000223344444444444444445555555555555555555555
Q ss_pred cCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCC-C-----
Q 047549 371 IPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSL-P----- 444 (479)
Q Consensus 371 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~-~----- 444 (479)
.|..+..+++|+.|++++|.+++.+|..+..+++|+.+++++|...+. .+......+++.+++++|+++.. |
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG--LPDSFGSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee--cCcccccccceEEECcCCccCCccChhhhh
Confidence 555555566666666666666655555555555666555554432211 12222334455555555555422 1
Q ss_pred ----CeEEccCCcccccCChhhhcccccCeeeCCCCCC
Q 047549 445 ----PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNF 478 (479)
Q Consensus 445 ----~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l 478 (479)
..|++++|++.+.+|..+.++++|++|++++|++
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 1244444444444444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.8e-44 Score=388.32 Aligned_cols=412 Identities=29% Similarity=0.394 Sum_probs=261.2
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEE
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~ 128 (479)
++++|++++|.+.+.+|..++.+++|++|++++|.+.+..|.. ++|++|++++|.+.+ .+|..++++++|++|+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG--QIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC--cCChHHcCcCCccEEE
Confidence 4555555555555555666666666666666666665544332 566666666666654 4566666666666666
Q ss_pred ccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeee
Q 047549 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLN 208 (479)
Q Consensus 129 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 208 (479)
+++|.+.+.+|..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+++..|..+..+++|+.|+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--------LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChh--------HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 6666666666666666666677776666666655554 44567777777777777777777777777777777
Q ss_pred ccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 209 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+.+.++. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 291 Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 291 LSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 777777765554 5667777777777777777777777777777777777777777767777777777777777777665
Q ss_pred CCCCccccccCCCCCcEEEccCccccccCCCCcccc------------------ccccccCCccEEEeeCCcceecCchh
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT------------------ISSYAFQNLVVLGIGNCEIKGQIPTW 350 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~n~l~~~~~~~ 350 (479)
...+ ..+..+++|+.|++++|.+.+.+|...... .....+++|+.|++++|.+.+.++..
T Consensus 370 ~~~p--~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 447 (968)
T PLN00113 370 GEIP--EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447 (968)
T ss_pred eeCC--hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence 3211 223334444444444444444433322100 00013445555555555555555555
Q ss_pred hcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccc
Q 047549 351 LGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKC 430 (479)
Q Consensus 351 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l 430 (479)
+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++..|..|.++++|+.+++++|......+ ..+....+|
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L 525 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKL 525 (968)
T ss_pred hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC-hHHcCccCC
Confidence 5555555555555555555555433 23566677777777776777777777777777776654433221 233445667
Q ss_pred cccccccccccCC-C---------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 431 ALYNQQYNKLFSL-P---------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 431 ~~~~l~~n~l~~~-~---------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
+.+++++|.+++. | ..|++++|++++.+|..+.++++|+.|++++|+++
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 7788888877653 2 25788888888888888888888888888888763
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-36 Score=280.21 Aligned_cols=346 Identities=20% Similarity=0.223 Sum_probs=276.4
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~ 128 (479)
...+.|++++|.+...-+..+-++++|+++++..|.++.+|... ..|+.|+|.+|.++. .-.+.+.-++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s--v~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS--VTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecccccc--ccHHHHHhHhhhhhhh
Confidence 35678999999998887888899999999999999888776433 579999999998874 2234677788999999
Q ss_pred ccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeee
Q 047549 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLN 208 (479)
Q Consensus 129 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 208 (479)
|+.|.|+......|..-.++++|+|+.|.++...... |..+.+|..|.|+.|.++...+..|..+++|+.|+
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~--------F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH--------FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccccccccccc--------ccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 9999988444446777788999999999888654443 56677888999999999977777788899999999
Q ss_pred ccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 209 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+..|.+. .+....|.++++|+.|.+.+|.+...-...|..+.+++.|+|..|.++..-.+++.+++.|+.|++++|.|.
T Consensus 228 LnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 228 LNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred cccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 9999886 444457888899999999999888666777888889999999999988887888888899999999999888
Q ss_pred CCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
.+.. .....+++|+.|++++|.++...+..+. .+..|++|.+++|.+...-...|..+++|++|||++|.+.
T Consensus 307 rih~--d~WsftqkL~~LdLs~N~i~~l~~~sf~------~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 307 RIHI--DSWSFTQKLKELDLSSNRITRLDEGSFR------VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred eeec--chhhhcccceeEeccccccccCChhHHH------HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 6654 4556678899999998888776555444 5678888888888888555567888888889999888887
Q ss_pred cccC---cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCC
Q 047549 369 GPIP---GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADG 416 (479)
Q Consensus 369 ~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 416 (479)
..+. ..|..+++|+.|++.+|++..+...+|.+++.|+.|++.+|...
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 5544 34677888888899888888667778888888888777665543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-35 Score=272.91 Aligned_cols=362 Identities=22% Similarity=0.251 Sum_probs=234.3
Q ss_pred CCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEE
Q 047549 77 HLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDIS 152 (479)
Q Consensus 77 ~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 152 (479)
.-++|++++|.+...-+. .++|+++++.+|.++ .+|....-..+|++|+|..|.|+..-.+++..++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt---~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT---RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh---hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 456688888877655332 377777777777777 5676666666777777777777755556677777777777
Q ss_pred CCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEE
Q 047549 153 LPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232 (479)
Q Consensus 153 l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 232 (479)
||.|.++.....+ |..-.++++|+|++|.|+..-...|..+.+|..|.++.|.++ .+|...|..+++|+.|
T Consensus 156 LSrN~is~i~~~s--------fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 156 LSRNLISEIPKPS--------FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhchhhcccCCC--------CCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhh
Confidence 7777776543332 344466777777777777666667777777777777777776 6666677777777777
Q ss_pred EccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcc
Q 047549 233 DLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIF 312 (479)
Q Consensus 233 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~ 312 (479)
++..|.+.-.---.|..+++|+.|.+..|++.......|..+.+++.|+|..|+++.+.. ..+-++..|+.|++++|.
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc--ccccccchhhhhccchhh
Confidence 777777763323456677777777777777777666677777777777777777765543 445566677777777776
Q ss_pred ccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 313 FHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
+....+..+. ..++|+.|++++|+++...+..|..+..|++|.|++|++...-...|..+++|+.|||++|.++
T Consensus 305 I~rih~d~Ws------ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 305 IQRIHIDSWS------FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred hheeecchhh------hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 6655444443 3466777777777777555666666777777777777776555556666777777777777766
Q ss_pred ccCCc---cccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccC
Q 047549 393 GEFPK---EFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLH 469 (479)
Q Consensus 393 ~~~p~---~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~ 469 (479)
..+-+ .|.++++|+.|.+.+|....+ +-.+|.+...|+ .|||.+|.+...-|..|.++ .|+
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE--------------~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALE--------------HLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred EEEecchhhhccchhhhheeecCceeeec-chhhhccCcccc--------------eecCCCCcceeecccccccc-hhh
Confidence 55432 355566665544443322211 112222222221 35666676665666666666 666
Q ss_pred eeeCC
Q 047549 470 VLDLS 474 (479)
Q Consensus 470 ~L~ls 474 (479)
.|-++
T Consensus 443 ~Lv~n 447 (873)
T KOG4194|consen 443 ELVMN 447 (873)
T ss_pred hhhhc
Confidence 66554
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=7.4e-35 Score=261.88 Aligned_cols=397 Identities=27% Similarity=0.343 Sum_probs=253.6
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.++.+++.++++. ..|++++.+..++.++.++|.+...++.. .+++.++.++|.+. .+|+.++.+..++.++.
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~---el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK---ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee---ecCchHHHHhhhhhhhc
Confidence 4566666666665 45666666666777777777666655444 56667777777766 56667777777777777
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeec
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 209 (479)
..|++. ..|..+..+.++..+++.+|.+....|.. -+|+.|++++...|.++ .+|..++.+.+|..|++
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~---------i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENH---------IAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYL 213 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHH---------HHHHHHHhcccchhhhh-cCChhhcchhhhHHHHh
Confidence 777776 56666666777777777777766544443 23778888888888777 57788888888888999
Q ss_pred cCCcCccccCccccCCCCCCcEEEccCCcccccCCcc-CcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 210 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
..|++. .+| .|..+..|++++++.|.++ .+|.. .+++.++..||++.|++.. .|+.++.+.+|.+||+++|.++
T Consensus 214 ~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 214 RRNKIR-FLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred hhcccc-cCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc
Confidence 999887 666 5778888888888888887 55544 4478888888888888876 6777888888888888888888
Q ss_pred CCCCccccccCCCCCcEEEccCcccccc-----------------------CC---CC--------ccccc-cccccCCc
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEA-----------------------IP---DE--------NQITI-SSYAFQNL 333 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~-----------------------~~---~~--------~~~~~-~~~~~~~L 333 (479)
..|. .++++ .|+.|.+.+|.+... .+ +. ....+ ......+.
T Consensus 289 ~Lp~---sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 289 SLPY---SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred cCCc---ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 7764 45566 777777777764110 00 00 00000 00011233
Q ss_pred cEEEeeCCcceecCchh-hcC--CCCCCEEeCCCCccc-----------------------cccCcccCCCCCCcEEEcc
Q 047549 334 VVLGIGNCEIKGQIPTW-LGK--LKKLQVLDLGSNQIT-----------------------GPIPGWLGNMPNLFYIDLS 387 (479)
Q Consensus 334 ~~L~l~~n~l~~~~~~~-l~~--l~~L~~L~Ls~n~l~-----------------------~~~~~~~~~l~~L~~L~L~ 387 (479)
+.|++++-+++ .+|+. |.. -.-.+.+++++|++. +.+|..++.+++|+.|+++
T Consensus 365 kiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 365 KILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 44555554444 22322 211 111344444444432 1344445556666666666
Q ss_pred CCcccccCCccccCCccccccccccccCCCCcccCccccccccc-ccccccccccCCCC----------eEEccCCcccc
Q 047549 388 YNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCA-LYNQQYNKLFSLPP----------AIYLRNNGLNG 456 (479)
Q Consensus 388 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~l~~n~l~~~~~----------~l~ls~n~l~~ 456 (479)
+|.+. .+|..+..+..|+.++++.|-... .|.+....+.. .+--++|++..++. .||+.+|.+.
T Consensus 444 NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~---lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq- 518 (565)
T KOG0472|consen 444 NNLLN-DLPEEMGSLVRLQTLNLSFNRFRM---LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ- 518 (565)
T ss_pred cchhh-hcchhhhhhhhhheeccccccccc---chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-
Confidence 66665 566666666666666665553221 22222222221 12223355555543 4899999999
Q ss_pred cCChhhhcccccCeeeCCCCCCC
Q 047549 457 SIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 457 ~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.+|+.++++.+|++|++++|+|+
T Consensus 519 ~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hCChhhccccceeEEEecCCccC
Confidence 99999999999999999999984
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=9.9e-33 Score=261.02 Aligned_cols=307 Identities=22% Similarity=0.339 Sum_probs=197.3
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcC---CCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLS---PSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.++++-|.|...++. .+|+.++.+.+|++|.+++|++..+. ...|.||.+++.+|++... .+|..+.++..|..|
T Consensus 31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns-GiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS-GIPTDIFRLKDLTIL 108 (1255)
T ss_pred hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC-CCCchhcccccceee
Confidence 345666666666654 46777777777777777777765443 3447777777777777543 567777777777777
Q ss_pred EccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCee
Q 047549 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITL 207 (479)
Q Consensus 128 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 207 (479)
|++.|++. ..|..+...+++-+|+||+|.+. .+|..+ |.++..|-.|+|++|.+. .+|..+..+..|+.|
T Consensus 109 DLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~l-------finLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 109 DLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSL-------FINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred ecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchH-------HHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 77777777 66777777777777777777766 344443 445666777777777777 456666777777777
Q ss_pred eccCCcCccccCccccCCCCCCcEEEccCCccc-ccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCC
Q 047549 208 NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT-GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 208 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (479)
++++|.+. ...-..+..+++|++|.+++.+-+ .-+|..+..+.+|..+|++.|.+.. .|+.+..+++|+.|+|++|+
T Consensus 179 ~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCc
Confidence 77777664 222223344566667777665433 2466667777777777777777654 56777777777777777777
Q ss_pred CCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCc
Q 047549 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 287 l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
++.+.. ... .+.+|++|+++.|+++ .+|+.+.+++.|+.|.+.+|+
T Consensus 257 iteL~~---~~~------------------------------~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 257 ITELNM---TEG------------------------------EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred eeeeec---cHH------------------------------HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence 764432 111 3345666666666665 556666666666666666665
Q ss_pred cc-cccCcccCCCCCCcEEEccCCcccccCCccccCCcccc
Q 047549 367 IT-GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406 (479)
Q Consensus 367 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 406 (479)
+. ..+|..++.+.+|+.+...+|.+. ..|+.++.|..|+
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 54 235555666666666666666665 5666666666554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.6e-31 Score=252.92 Aligned_cols=312 Identities=25% Similarity=0.330 Sum_probs=252.0
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCC--CcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLS--FLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.+.+|.+.+|++.. +...+..++.||.++++.|++. |+++.. ..|+.||||+|+++ ..|..+...+++-+|
T Consensus 56 kLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~---EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR---EVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh---hcchhhhhhcCcEEE
Confidence 68899999999873 4567889999999999999886 455554 78999999999999 789999999999999
Q ss_pred EccccccccCCCcc-CCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCe
Q 047549 128 RAGFSYLSGSIPDD-VSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLIT 206 (479)
Q Consensus 128 ~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 206 (479)
++++|+|. .+|.. |.+++.|-.|+||+|++...+|. +.++..|++|.|++|.+...-...+..+++|+.
T Consensus 132 NLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ---------~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 132 NLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQ---------IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred EcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHH---------HHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 99999999 66654 67899999999999999865554 456789999999999887544444556677888
Q ss_pred eeccCCcCc-cccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCC
Q 047549 207 LNLRINNFR-GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNN 285 (479)
Q Consensus 207 L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (479)
|.+++.+-+ ..+|. .+..+.+|..++++.|.+. ..|+.+..+++|+.|++++|+++.. .-......+|++|+++.|
T Consensus 202 Lhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhcccccchhhcCCC-chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccc
Confidence 889887755 34665 7888999999999999998 8899999999999999999999874 344566789999999999
Q ss_pred CCCCCCCccccccCCCCCcEEEccCcccccc-CCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCC
Q 047549 286 NLSNITGAIGILMGCKNLRMLLLCKIFFHEA-IPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGS 364 (479)
Q Consensus 286 ~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 364 (479)
+++.+|. +++.+++|+.|.+.+|.++-. +|..+. .+.+|+++..++|.+. ..|+.+..|..|+.|.|+.
T Consensus 279 QLt~LP~---avcKL~kL~kLy~n~NkL~FeGiPSGIG------KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 279 QLTVLPD---AVCKLTKLTKLYANNNKLTFEGIPSGIG------KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hhccchH---HHhhhHHHHHHHhccCcccccCCccchh------hhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 9998774 567778888888888876532 333332 5567777777777776 6777888888888888888
Q ss_pred CccccccCcccCCCCCCcEEEccCCccc
Q 047549 365 NQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 365 n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
|++. .+|+.+.-++.|+.||+..|.--
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCcCc
Confidence 8877 67777777888888888877544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=7.5e-33 Score=249.01 Aligned_cols=394 Identities=21% Similarity=0.276 Sum_probs=310.5
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.+..+.+++|.+. .+.+.+.++..|.+|++++|++...++.. ..+..++.++|.+. .+|+.+..+..+.++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls---~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS---ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh---hccHHHhhhhhhhhhhc
Confidence 4778899999876 45677889999999999999999988876 67889999999999 79999999999999999
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeec
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 209 (479)
++|.+. .+++.++.+..++.++..+|+++.. |++ +..+.++..+++.+|+++...|..+. ++.|+.++.
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~sl-p~~--------~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~ 190 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQISSL-PED--------MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDC 190 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccccC-chH--------HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhccc
Confidence 999999 8888999999999999999999854 444 34567888999999999966555555 999999999
Q ss_pred cCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCC
Q 047549 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN 289 (479)
Q Consensus 210 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (479)
..|.+. .+|. .++.+.+|..|++.+|++. ..| .|..|..|+++.++.|.+.....+...+++++..||+..|++++
T Consensus 191 ~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 191 NSNLLE-TLPP-ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred chhhhh-cCCh-hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc
Confidence 999886 7886 7899999999999999998 677 78999999999999999987666666799999999999999998
Q ss_pred CCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceec-----------------------
Q 047549 290 ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ----------------------- 346 (479)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------------------- 346 (479)
+|.. ++.+++|++||+++|.+++-.+.. . .+ .|+.|-+.||.+...
T Consensus 267 ~Pde---~clLrsL~rLDlSNN~is~Lp~sL-g------nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 267 VPDE---ICLLRSLERLDLSNNDISSLPYSL-G------NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred CchH---HHHhhhhhhhcccCCccccCCccc-c------cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 8854 556788999999999998754432 1 33 677777777765411
Q ss_pred ---------------Cch---hhcCCCCCCEEeCCCCccccccCcccCCCC--CCcEEEccCCcccc-------------
Q 047549 347 ---------------IPT---WLGKLKKLQVLDLGSNQITGPIPGWLGNMP--NLFYIDLSYNSISG------------- 393 (479)
Q Consensus 347 ---------------~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~------------- 393 (479)
.+. ......+.+.|++++-+++..+.+.|..-. -.+..+++.|++..
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 001 112235678899998888843333333221 14555566555541
Q ss_pred ----------cCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCe---------EEccCCcc
Q 047549 394 ----------EFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA---------IYLRNNGL 454 (479)
Q Consensus 394 ----------~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~---------l~ls~n~l 454 (479)
.+|..++.+++|..++++||.-.... . .+.....+|.+|+++|+|..+|+. +-.++|++
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP-~-e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP-E-EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhhhcc-h-hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccc
Confidence 44556777888999999988766443 2 223344589999999999998873 44577999
Q ss_pred cccCChhhhcccccCeeeCCCCCC
Q 047549 455 NGSIPIEIGNVMFLHVLDLSLNNF 478 (479)
Q Consensus 455 ~~~~~~~~~~~~~L~~L~ls~N~l 478 (479)
...-|+++.++.+|++||+.+|.+
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred cccChHHhhhhhhcceeccCCCch
Confidence 966777799999999999999976
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-29 Score=248.89 Aligned_cols=361 Identities=22% Similarity=0.266 Sum_probs=249.7
Q ss_pred EEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcc
Q 047549 54 VTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130 (479)
Q Consensus 54 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~ 130 (479)
+++|++++|.+. ..|..+..+.+|+.|.++.|.|...+... .+|++++|.+|.+. .+|..+..+.+|+.|+++
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~---~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ---SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh---cCchhHHhhhcccccccc
Confidence 888999988865 56888888899999999999888877554 78999999999888 788899999999999999
Q ss_pred ccccccCCCccCCCCCCCCEEECCCC-------------------cccccCCccccccCCCCCCCCCCCCEEEccCCcCc
Q 047549 131 FSYLSGSIPDDVSAAASLEDISLPVN-------------------QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191 (479)
Q Consensus 131 ~n~~~~~~~~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~ 191 (479)
+|.+. .+|..+..+..++.+..++| .+.+.++..+..+ .. .|+|.+|.+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l--------~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL--------TH--QLDLRYNEME 191 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh--------he--eeecccchhh
Confidence 99887 56666655555555555555 3333333222222 21 2555555444
Q ss_pred cccchh-----------------hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 192 GFLPQF-----------------LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 192 ~~~~~~-----------------l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
...... --.-++++.|+.+.|.++ .+. .-....+|++++++.|+++ .+|.++..+.+|+
T Consensus 192 ~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 192 VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLD--VHPVPLNLQYLDISHNNLS-NLPEWIGACANLE 267 (1081)
T ss_pred hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce-eec--cccccccceeeecchhhhh-cchHHHHhcccce
Confidence 110000 012356667777777765 221 1123457888888888887 5678888888888
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccc-----------
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQI----------- 323 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~----------- 323 (479)
.++..+|.++. .|..+....+|+.+++.+|.+..++. ...+.+.|++|++..|.+....+..+.+
T Consensus 268 ~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~---~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 268 ALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPP---FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred EecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCC---cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh
Confidence 88888888854 56667777777888877777776653 3455677777777777664322211111
Q ss_pred --------cccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccC
Q 047549 324 --------TISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEF 395 (479)
Q Consensus 324 --------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 395 (479)
......++.|+.|++.+|.+++.....+.+.++|+.|+|++|++.......+.++..|++|+||+|+++ .+
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~L 422 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TL 422 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hh
Confidence 011123456888999999999887778999999999999999998555567888999999999999999 88
Q ss_pred CccccCCccccccccccccCCCCcccCccccccccccccccccccc
Q 047549 396 PKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLF 441 (479)
Q Consensus 396 p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~ 441 (479)
|++..++..|+.+.+-+|... ..|.+....+++.+|++.|+|+
T Consensus 423 p~tva~~~~L~tL~ahsN~l~---~fPe~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLL---SFPELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCcee---echhhhhcCcceEEecccchhh
Confidence 899999999998887655432 2334445555555555555543
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=7.1e-27 Score=230.91 Aligned_cols=380 Identities=22% Similarity=0.258 Sum_probs=258.1
Q ss_pred EECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 57 LWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 57 L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
+|++.++++ .+|..+.....+..|+++.|-+...|-.+ -.|+.||+++|++. ..|..+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~---~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS---SFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc---cCCchhhhHHHHhhcccchh
Confidence 455666654 45666655556778888877665533221 34888888888887 57888888889999999999
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
.+. ..|.....+.+|+++.|.+|.+. ..|.+ +..+++|++|+++.|++. .+|..+..++.++.+.+++|
T Consensus 79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~--------~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 79 YIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPAS--------ISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hHh-hCchhhhhhhcchhheeccchhh-cCchh--------HHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcc
Confidence 888 67777888889999999888876 34443 456788899999999888 57888888888888888888
Q ss_pred cCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
.... .++... ++.+++..|.+.+.++.....++. .+++++|.+.. -.+..+.+|+.+....|++..+..
T Consensus 148 ~~~~-----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~ 216 (1081)
T KOG0618|consen 148 EKIQ-----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEI 216 (1081)
T ss_pred hhhh-----hhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEe
Confidence 3221 222222 788888888888777777777666 78999998762 346677888888888888875432
Q ss_pred ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
..++++.|+.+.|.++...+. ....+|+++++++|++. .+|+|+..+.+|+.+...+|+++ .+|
T Consensus 217 ------~g~~l~~L~a~~n~l~~~~~~--------p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp 280 (1081)
T KOG0618|consen 217 ------SGPSLTALYADHNPLTTLDVH--------PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALP 280 (1081)
T ss_pred ------cCcchheeeeccCcceeeccc--------cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhH
Confidence 346788888888887743332 24467888888888888 56688888888888888888885 555
Q ss_pred cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCccc----------------------Ccc--cccc
Q 047549 373 GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQL----------------------PLF--VPET 428 (479)
Q Consensus 373 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~----------------------~~~--~~~~ 428 (479)
..+....+|+.|++.+|.+. .+|....+++.|+.|++..|........ +.+ ....
T Consensus 281 ~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA 359 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence 55556666666666666666 4555555566666666554433332221 111 0112
Q ss_pred cccccccccccccC--CC--------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 429 KCALYNQQYNKLFS--LP--------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 429 ~l~~~~l~~n~l~~--~~--------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.|+.+++.+|.|+. +| +.|++++|++...-...+.++..|+.|+||+|+|+
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 23444445555542 11 13677777777333345666777777777777664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.4e-22 Score=218.53 Aligned_cols=331 Identities=21% Similarity=0.228 Sum_probs=235.5
Q ss_pred CCCEEEEECCCCCccc--cccccccCCCCCCeeecCCCcCC------CcCC-CC----CCCCEEEcCCcccccCCCCCCc
Q 047549 51 EAQVTHLWLPDRGLRG--SIYPFTGKLTHLCHLNLSHNHLS------FLSP-SV----PFLSILDFSHNYFRGHCQLPSG 117 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~--~~~~~l~~l~~L~~L~L~~n~l~------~~~~-~~----~~L~~L~L~~n~l~~~~~l~~~ 117 (479)
..+++.+.+.-..+.. ..+.++..+++|+.|.+..+... ...| .+ ++|+.|++.++.+. .+|..
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~---~lP~~ 607 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR---CMPSN 607 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC---CCCCc
Confidence 3456666554333321 23456788999999999766432 1112 12 57999999999887 68887
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+ ...+|+.|+++++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..
T Consensus 608 f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~---------ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 608 F-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD---------LSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred C-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc---------cccCCcccEEEecCCCCccccchh
Confidence 7 4688999999999988 6778888899999999998764445553 456889999999998766678889
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+..+++|+.|++++|.....+|. .+ ++++|+.|++++|.....+|.. .++|+.|++++|.+.. +|..+ .+++|
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L 749 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENL 749 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-ccccc
Confidence 99999999999998765446764 23 6889999999998765455542 4678999999998865 44433 56788
Q ss_pred CEEEccCCCCCCCCCcc-----ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhc
Q 047549 278 SYLSINNNNLSNITGAI-----GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLG 352 (479)
Q Consensus 278 ~~L~L~~n~l~~~~~~~-----~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 352 (479)
++|.+.++....+.... .....+++|+.|++++|.....+|..+. .+++|+.|++++|...+.+|...
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~------~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ------NLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh------CCCCCCEEECCCCCCcCeeCCCC-
Confidence 88888764432221111 1122346788888888876666665443 67788888888876544666554
Q ss_pred CCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccc
Q 047549 353 KLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
.+++|+.|++++|.....+|.. ..+|++|++++|.++ .+|.++..+++|+.+++.++
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 6788888888887655445442 357888888888887 67778888888887776654
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=5.7e-22 Score=201.92 Aligned_cols=260 Identities=20% Similarity=0.237 Sum_probs=156.5
Q ss_pred EEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccc
Q 047549 54 VTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY 133 (479)
Q Consensus 54 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~ 133 (479)
-..|++++++++ .+|+.+. ++|+.|++.+|+++.++...++|++|++++|.++ .+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt---sLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT---SLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC---cccCc---ccccceeeccCCc
Confidence 457899999988 5677665 4899999999999887766688888888888887 45542 3577888888888
Q ss_pred cccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc
Q 047549 134 LSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN 213 (479)
Q Consensus 134 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 213 (479)
+. .+|.. ..+|+.|++++|+++.. |. .+++|+.|++++|++++ +|.. ...|+.|++++|.
T Consensus 274 L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~-----------~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 274 LT-HLPAL---PSGLCKLWIFGNQLTSL-PV-----------LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQ 333 (788)
T ss_pred hh-hhhhc---hhhcCEEECcCCccccc-cc-----------cccccceeECCCCcccc-CCCC---cccccccccccCc
Confidence 77 45542 24677788888877632 22 13567778888777774 3332 2356677777777
Q ss_pred CccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCc
Q 047549 214 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGA 293 (479)
Q Consensus 214 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 293 (479)
+. .+|. ...+|++|++++|+++ .+|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|..
T Consensus 334 L~-~LP~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l 400 (788)
T PRK15387 334 LT-SLPT----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL 400 (788)
T ss_pred cc-cccc----cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc
Confidence 75 4442 1246777777777776 34432 2456666666666664 3322 23566666666666644421
Q ss_pred cccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 294 IGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 294 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
.++|+.|++++|.+.. +|. .+.+|+.|++++|+++ .+|..+..++.|+.|++++|++.+..+
T Consensus 401 ------~s~L~~LdLS~N~Lss-IP~---------l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 401 ------PSELKELMVSGNRLTS-LPM---------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ------ccCCCEEEccCCcCCC-CCc---------chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 1345555555554432 221 1123444455555444 344444444455555555555444333
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-24 Score=194.12 Aligned_cols=350 Identities=21% Similarity=0.199 Sum_probs=210.4
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEc-CCcccccCCCCCC-cCCCCCCC
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDF-SHNYFRGHCQLPS-GLGNFSKL 124 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L-~~n~l~~~~~l~~-~~~~l~~L 124 (479)
....+.|+|..|.|+...+.+++.+++||+|||++|+|+.+.|.. ++|.+|-+ ++|.|+ .+|. .|+.+..+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~---~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT---DLPKGAFGGLSSL 142 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh---hhhhhHhhhHHHH
Confidence 346899999999999988899999999999999999999987765 55555555 448888 5666 57778888
Q ss_pred cEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCC----------------------------CCCC
Q 047549 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------------------NIGK 176 (479)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l----------------------------~~~~ 176 (479)
+.|.+.-|++.-...+.|..++++..|.+.+|.+.......+..+..+ .+++
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 888888887775556667777777777777776654332232222111 0000
Q ss_pred CCC----------------------CCEE---EccCCcCcccc-chhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 177 LAN----------------------LKSL---KLHTNSLSGFL-PQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 177 ~~~----------------------L~~L---~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
... ++.+ ..+.+...... ...|..+++|++|++++|+++ .+...+|.....++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQ 301 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhh
Confidence 000 0000 00111111111 234667778888888888877 55556777777888
Q ss_pred EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCC--------------CCcccc
Q 047549 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI--------------TGAIGI 296 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------~~~~~~ 296 (479)
+|++..|++...-...|..+..|+.|++++|+|+...|.+|..+.+|.+|++-.|.+.=- ......
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 888888877766566677777788888888888777777777777777777776655300 000011
Q ss_pred ccCCCCCcEEEccCcccc---ccCCCCcccccccc---ccCCcc-EEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc
Q 047549 297 LMGCKNLRMLLLCKIFFH---EAIPDENQITISSY---AFQNLV-VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369 (479)
Q Consensus 297 l~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~~~---~~~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 369 (479)
.+....++.+.++...+. ...|++.....+.. .++-+. +...++..++ .+|..+. ..-+++++.+|.++
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~- 457 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT- 457 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-
Confidence 222334555555544332 22333222111111 111121 2223333333 3333322 23456677777776
Q ss_pred ccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccc
Q 047549 370 PIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 370 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~ 411 (479)
.+|.. .+.+| .+|+++|+++...-..|.++++|..+.++
T Consensus 458 ~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlils 496 (498)
T KOG4237|consen 458 SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILS 496 (498)
T ss_pred ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEe
Confidence 45544 44566 77777777775556667777777666554
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=5.6e-21 Score=209.00 Aligned_cols=330 Identities=18% Similarity=0.201 Sum_probs=190.9
Q ss_pred CCCEEEEECCCCC------ccccccccccCCC-CCCeeecCCCcCCCcCCCC--CCCCEEEcCCcccccCCCCCCcCCCC
Q 047549 51 EAQVTHLWLPDRG------LRGSIYPFTGKLT-HLCHLNLSHNHLSFLSPSV--PFLSILDFSHNYFRGHCQLPSGLGNF 121 (479)
Q Consensus 51 ~~~l~~L~l~~~~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~--~~L~~L~L~~n~l~~~~~l~~~~~~l 121 (479)
..+++.|.+..+. +...+|+.+..++ +|+.|.+.++.++..+..+ .+|++|++++|.+. .+|..+..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~---~L~~~~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE---KLWDGVHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc---ccccccccC
Confidence 4466666664432 2334566666654 5899999888887777655 78899999998887 677788888
Q ss_pred CCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcC
Q 047549 122 SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNC 201 (479)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 201 (479)
++|+.++++++.....+|. +..+++|++|++++|.....+|.. +..+++|+.|++++|..-..+|..+ .+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s--------i~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS--------IQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh--------hhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 8899999988764446664 777888999999887655566654 4557788888888764433555544 67
Q ss_pred CCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcc-------cccChhhhhcc
Q 047549 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKI-------EEQISPTILAL 274 (479)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l-------~~~~~~~~~~l 274 (479)
++|+.|++++|.....+|. ...+|++|++++|.+. .+|..+ .+++|++|.+.++.. ....+..+...
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 7888888887764434432 2456777888777765 455433 345555555544221 11111112223
Q ss_pred CCCCEEEccCCCC-CCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcC
Q 047549 275 VSVSYLSINNNNL-SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK 353 (479)
Q Consensus 275 ~~L~~L~L~~n~l-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 353 (479)
++|+.|++++|.. ..+| ..+..+++|+.|++++|...+.+|... .+++|+.|++++|.....+|..
T Consensus 778 ~sL~~L~Ls~n~~l~~lP---~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~--- 844 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELP---SSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDI--- 844 (1153)
T ss_pred ccchheeCCCCCCccccC---hhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCcccccccc---
Confidence 4555555555532 2222 224455555555555544333333321 2345555555555433233321
Q ss_pred CCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccc
Q 047549 354 LKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 354 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
.++|+.|++++|.+. .+|..+..+++|+.|++++|+--..+|..+..++.|+.++++++
T Consensus 845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 234555555555554 34555555555555555553222234444445555544444433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.3e-21 Score=197.50 Aligned_cols=267 Identities=18% Similarity=0.253 Sum_probs=187.8
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|.. .++|++|++++|+++.. |..
T Consensus 201 ~~~~~LdLs~~~Lt---sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~LtsL-P~l---------- 260 (788)
T PRK15387 201 NGNAVLNVGESGLT---TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTSL-PVL---------- 260 (788)
T ss_pred CCCcEEEcCCCCCC---cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCcc-cCc----------
Confidence 35667888888887 6777665 47888888888888 56642 57888888888888743 321
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.++|+.|++++|.++. +|.. .++|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. ...|+.
T Consensus 261 -p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~ 326 (788)
T PRK15387 261 -PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCK 326 (788)
T ss_pred -ccccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccc
Confidence 3578888888888874 3432 256788888888887 5553 24678888888888873 4432 245778
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccE
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~ 335 (479)
|++++|.++. +|. ...+|+.|++++|+++.+|.. .++|+.|++++|.+.. +|. ...+|+.
T Consensus 327 L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L~~-LP~---------l~~~L~~ 386 (788)
T PRK15387 327 LWAYNNQLTS-LPT---LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRLTS-LPA---------LPSGLKE 386 (788)
T ss_pred cccccCcccc-ccc---cccccceEecCCCccCCCCCC------Ccccceehhhcccccc-Ccc---------cccccce
Confidence 8888888876 333 124788888888888876642 2467778888887764 342 2346888
Q ss_pred EEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccC
Q 047549 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415 (479)
Q Consensus 336 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 415 (479)
|++++|++++ +|.. .++|+.|++++|++.. +|.. ..+|+.|++++|+++ .+|..+.+++.|+.
T Consensus 387 LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~-------- 449 (788)
T PRK15387 387 LIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETT-------- 449 (788)
T ss_pred EEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCe--------
Confidence 8888888873 4432 3568888888888873 5543 246778888888887 67777777776643
Q ss_pred CCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhc
Q 047549 416 GNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGN 464 (479)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~ 464 (479)
|++++|++++.++..+.+
T Consensus 450 -------------------------------LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 450 -------------------------------VNLEGNPLSERTLQALRE 467 (788)
T ss_pred -------------------------------EECCCCCCCchHHHHHHH
Confidence 788888888887776644
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=7e-24 Score=191.13 Aligned_cols=286 Identities=20% Similarity=0.235 Sum_probs=191.6
Q ss_pred cCCCcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCC-CcccccCC
Q 047549 87 HLSFLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPV-NQLSGAIS 163 (479)
Q Consensus 87 ~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~ 163 (479)
.++.+|... +.-..+.|..|+|+ .+|+ +|+.+++|+.|||+.|.|+.+-|++|.+++.|.+|.+.+ |+++....
T Consensus 57 GL~eVP~~LP~~tveirLdqN~I~---~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANLPPETVEIRLDQNQIS---SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccCCCcceEEEeccCCcc---cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 344444444 45566777777776 5665 688899999999999999988888999998888877766 78875444
Q ss_pred ccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccc---
Q 047549 164 NGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT--- 240 (479)
Q Consensus 164 ~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--- 240 (479)
.. |+++..++-|.+.-|++.....+.|..++++..|.+.+|.+. .+....|..+..++.+.+..|.+.
T Consensus 134 ~~--------F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 134 GA--------FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred hH--------hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccc
Confidence 43 667788888888888888888888999999999999999887 666667888888999988888732
Q ss_pred ---------ccCCccCcCCCCCCEEEccCCcccccChhhhhcc-CCCCEEEccCCCCCCCCCccccccCCCCCcEEEccC
Q 047549 241 ---------GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILAL-VSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK 310 (479)
Q Consensus 241 ---------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~ 310 (479)
...|..++.........+.+.++..+.+..|... .++.. .++....-..+.....|..+++|+.|++++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s-~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS-RLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH-hhccccCcCCcChHHHHhhcccceEeccCC
Confidence 1122223333333333444444544444443322 11111 111111111112224467777777777777
Q ss_pred ccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCc
Q 047549 311 IFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390 (479)
Q Consensus 311 n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 390 (479)
|.+++.-+..+. +...+++|++..|++...-...|.++..|++|+|.+|+|+-..|..|..+.+|.+|++-.|.
T Consensus 284 N~i~~i~~~aFe------~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 284 NKITRIEDGAFE------GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred Cccchhhhhhhc------chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 777766555444 56677788888887775455667777888888888888877777777777788888877665
Q ss_pred c
Q 047549 391 I 391 (479)
Q Consensus 391 l 391 (479)
+
T Consensus 358 ~ 358 (498)
T KOG4237|consen 358 F 358 (498)
T ss_pred c
Confidence 5
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=4.8e-20 Score=189.14 Aligned_cols=332 Identities=16% Similarity=0.230 Sum_probs=207.9
Q ss_pred ccccChhhHHHHHHhHhcCCCCC------CCCCCCCCCcccee----------------EEeCCCCCEEEEECCCCCccc
Q 047549 9 DQACNQIDQETLLSLNFNASNPP------LNWSFSTDCCLWEG----------------IKCDSEAQVTHLWLPDRGLRG 66 (479)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~------~~w~~~~~~c~w~~----------------v~c~~~~~l~~L~l~~~~l~~ 66 (479)
++...+++...+.++.+.+..|+ ..|...+++|.-+. |.|. .+.|+++.+.+.....
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~-~~~vt~l~~~g~~~~~ 135 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG-GKSVTYTRVTESEQAS 135 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC-CCcccccccccccccc
Confidence 33455678888888888887775 44988889997654 3443 3446666665532211
Q ss_pred cc--cccccCCCCCCeeecCCCcCCCcCC------------CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 67 SI--YPFTGKLTHLCHLNLSHNHLSFLSP------------SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 67 ~~--~~~l~~l~~L~~L~L~~n~l~~~~~------------~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
.. +....++... .=+-..+.-.+..+ ...+...|+++++.++ .+|..+. +.|+.|++++|
T Consensus 136 ~~~~~~~~~~~~~~-w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt---sLP~~Ip--~~L~~L~Ls~N 209 (754)
T PRK15370 136 SASGSKDAVNYELI-WSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT---TIPACIP--EQITTLILDNN 209 (754)
T ss_pred cCCCCCChhhHHHH-HHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC---cCCcccc--cCCcEEEecCC
Confidence 10 0000000000 00000000000000 0045677888887777 5665543 46788888888
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
+++ .+|..+. .+|++|++++|.++. +|..+ .+.|+.|++++|.++ .+|..+. ++|+.|++++|
T Consensus 210 ~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l----------~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 210 ELK-SLPENLQ--GNIKTLYANSNQLTS-IPATL----------PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCC-cCChhhc--cCCCEEECCCCcccc-CChhh----------hccccEEECcCCccC-cCChhHh--CCCCEEECcCC
Confidence 887 5665543 478888888887763 34322 246788888888887 4555553 47888888888
Q ss_pred cCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
.+. .+|. .+ .++|+.|++++|+++ .+|..+. ++|+.|++++|.++.. |..+ .++|+.|++++|.++.++.
T Consensus 273 ~L~-~LP~-~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 273 KIS-CLPE-NL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred ccC-cccc-cc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccC-Cccc--cccceeccccCCccccCCh
Confidence 887 5554 22 247888888888887 4554332 4678888888888763 3332 2578888888888887664
Q ss_pred ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
.+ .++|+.|++++|.+.. +|.. ..++|++|++++|+++ .+|..+. ..|+.|++++|++. .+|
T Consensus 343 ~l-----~~sL~~L~Ls~N~L~~-LP~~--------lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 343 SL-----PPELQVLDVSKNQITV-LPET--------LPPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLP 404 (754)
T ss_pred hh-----cCcccEEECCCCCCCc-CChh--------hcCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCc
Confidence 32 2678888888887763 3331 2357888999998888 4565554 36888889999887 444
Q ss_pred c----ccCCCCCCcEEEccCCccc
Q 047549 373 G----WLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 373 ~----~~~~l~~L~~L~L~~N~l~ 392 (479)
. .+...+++..|++.+|+++
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 4 3344578888999999887
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=7.6e-20 Score=187.66 Aligned_cols=215 Identities=23% Similarity=0.363 Sum_probs=135.6
Q ss_pred ccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCC
Q 047549 41 CLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLG 119 (479)
Q Consensus 41 c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~ 119 (479)
+.+.-..|. ..+.+.|++++++++. +|..+. ++|+.|++++|.++.++... ++|++|++++|.++ .+|..+.
T Consensus 168 a~~r~~~Cl-~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt---sLP~~l~ 240 (754)
T PRK15370 168 AVQRMRDCL-KNNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT---SIPATLP 240 (754)
T ss_pred HHHHHHhhc-ccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc---cCChhhh
Confidence 334434554 3457889999888874 465553 47889999999888776544 67888888888887 5666443
Q ss_pred CCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhh
Q 047549 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~ 199 (479)
..|+.|++++|.+. .+|..+. .+|+.|++++|+++. +|..+ .++|+.|++++|+++. +|..+.
T Consensus 241 --~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l----------~~sL~~L~Ls~N~Lt~-LP~~lp 303 (754)
T PRK15370 241 --DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL----------PEELRYLSVYDNSIRT-LPAHLP 303 (754)
T ss_pred --ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc----------CCCCcEEECCCCcccc-Ccccch
Confidence 46888888888877 6666553 467888888887773 44432 2467777888777774 343332
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCE
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSY 279 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 279 (479)
+.|+.|++++|.+. .+|. .+ .++|+.|++++|.++ .+|..+ .++|+.|++++|.++. +|..+ .++|+.
T Consensus 304 --~sL~~L~Ls~N~Lt-~LP~-~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~ 371 (754)
T PRK15370 304 --SGITHLNVQSNSLT-ALPE-TL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQITV-LPETL--PPTITT 371 (754)
T ss_pred --hhHHHHHhcCCccc-cCCc-cc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCCc-CChhh--cCCcCE
Confidence 35667777777766 3442 11 246666677766665 344433 2456666666666653 33333 245666
Q ss_pred EEccCCCCCCCC
Q 047549 280 LSINNNNLSNIT 291 (479)
Q Consensus 280 L~L~~n~l~~~~ 291 (479)
|++++|.++.+|
T Consensus 372 LdLs~N~Lt~LP 383 (754)
T PRK15370 372 LDVSRNALTNLP 383 (754)
T ss_pred EECCCCcCCCCC
Confidence 666666655444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.1e-19 Score=170.09 Aligned_cols=267 Identities=22% Similarity=0.242 Sum_probs=130.8
Q ss_pred CCCCCcEEEcccccccc----CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc
Q 047549 120 NFSKLQTFRAGFSYLSG----SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP 195 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~ 195 (479)
.+..|+.++++++.++. .++..+...+.+++++++++.+.+ .+..+..+. ..+..+++|++|++++|.+....+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHH-HHHHhcCceeEEEccCCCCChhHH
Confidence 34445555555555432 123333444555555555554431 011110000 013345566666666666654444
Q ss_pred hhhhcCCC---CCeeeccCCcCccc----cCccccCCC-CCCcEEEccCCccccc----CCccCcCCCCCCEEEccCCcc
Q 047549 196 QFLMNCTN---LITLNLRINNFRGD----LSAYNFSTL-HNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRLSGNKI 263 (479)
Q Consensus 196 ~~l~~l~~---L~~L~l~~n~l~~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l 263 (479)
..+..+.+ |+.|++++|.+.+. +. ..+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLA-KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHH-HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 44444443 66666666655411 11 123344 5666666666666521 233344556677777777766
Q ss_pred ccc----ChhhhhccCCCCEEEccCCCCCCCCC--ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEE
Q 047549 264 EEQ----ISPTILALVSVSYLSINNNNLSNITG--AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLG 337 (479)
Q Consensus 264 ~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~ 337 (479)
++. .+..+..+++|+.|++++|.+++... ....+..+++|++|++++|.+.+.........+. ...+.|++|+
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~-~~~~~L~~L~ 256 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL-SPNISLLTLS 256 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh-ccCCCceEEE
Confidence 532 12233444567777777766653211 1123445566666666666554311111100000 0125677777
Q ss_pred eeCCccee----cCchhhcCCCCCCEEeCCCCccccc----cCcccCCC-CCCcEEEccCCc
Q 047549 338 IGNCEIKG----QIPTWLGKLKKLQVLDLGSNQITGP----IPGWLGNM-PNLFYIDLSYNS 390 (479)
Q Consensus 338 l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~N~ 390 (479)
+++|.+++ .+...+..+++|+.+++++|.+.+. ....+... +.|+++++.+|.
T Consensus 257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 77776652 1233445556677777777776633 22333334 566667666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=7.3e-19 Score=167.55 Aligned_cols=85 Identities=20% Similarity=0.145 Sum_probs=41.2
Q ss_pred EEccccccc-cCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCcc------ccchhhh
Q 047549 127 FRAGFSYLS-GSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG------FLPQFLM 199 (479)
Q Consensus 127 L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~------~~~~~l~ 199 (479)
|+|+.+.++ ......+..+.+|++++++++.++......+... +...+.+++++++++.+.+ .++..+.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~----l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA----LRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH----HhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 455555554 2333334455566777776666543211111110 2334556666666655541 1223344
Q ss_pred cCCCCCeeeccCCcCc
Q 047549 200 NCTNLITLNLRINNFR 215 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~ 215 (479)
.+++|+.|++++|.+.
T Consensus 79 ~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 79 KGCGLQELDLSDNALG 94 (319)
T ss_pred hcCceeEEEccCCCCC
Confidence 4556666666655554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.4e-18 Score=138.27 Aligned_cols=159 Identities=27% Similarity=0.484 Sum_probs=99.9
Q ss_pred CCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEE
Q 047549 75 LTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDI 151 (479)
Q Consensus 75 l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 151 (479)
+.+++.|.+++|.++.++|.. .+|+.|++++|++. .+|..++.+++|++|+++.|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie---~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE---ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh---hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 334444444444444444433 44444555555554 56667777777777777777776 667777777777777
Q ss_pred ECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 152 SLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 152 ~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
++.+|.+... .|.. |-.|..|+.|++++|.+. .+|..++++++|+.|.++.|.+. .+|. .++.+..|+
T Consensus 108 dltynnl~e~~lpgn--------ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk-eig~lt~lr 176 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGN--------FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK-EIGDLTRLR 176 (264)
T ss_pred hccccccccccCCcc--------hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH-HHHHHHHHH
Confidence 7777766543 3332 334566777777777776 56666777777777777777765 5564 566677777
Q ss_pred EEEccCCcccccCCccCcC
Q 047549 231 TIDLGNNNFTGSFPLTLTS 249 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~ 249 (479)
+|.+.+|+++ .+|..++.
T Consensus 177 elhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHhcccceee-ecChhhhh
Confidence 7777777776 55544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=5.2e-18 Score=136.34 Aligned_cols=156 Identities=30% Similarity=0.432 Sum_probs=139.7
Q ss_pred CCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 50 SEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 50 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
..++++.|.+++|.++ .+|+.++.+.+|+.|++.+|++...++.. ++|+.|++.-|.+. .+|..|+.++.|++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---cCccccCCCchhhh
Confidence 3568999999999997 67899999999999999999999988765 89999999999998 79999999999999
Q ss_pred EEcccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC
Q 047549 127 FRAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI 205 (479)
Q Consensus 127 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 205 (479)
||+.+|++.. .+|..|..+..|+.|++++|.+....|+ ++++++|+.|.+.+|.+- .+|..++.+++|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d---------vg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD---------VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh---------hhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 9999999864 7888899999999999999998855443 677899999999999887 5899999999999
Q ss_pred eeeccCCcCccccCc
Q 047549 206 TLNLRINNFRGDLSA 220 (479)
Q Consensus 206 ~L~l~~n~l~~~~~~ 220 (479)
+|.+.+|.++ .+|.
T Consensus 177 elhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPP 190 (264)
T ss_pred HHhcccceee-ecCh
Confidence 9999999998 5654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=2.8e-13 Score=138.89 Aligned_cols=130 Identities=31% Similarity=0.500 Sum_probs=87.9
Q ss_pred ccccChhhHHHHHHhHhcCCCCC-CCCCCCCCCc-----cceeEEeCCC-----CCEEEEECCCCCccccccccccCCCC
Q 047549 9 DQACNQIDQETLLSLNFNASNPP-LNWSFSTDCC-----LWEGIKCDSE-----AQVTHLWLPDRGLRGSIYPFTGKLTH 77 (479)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~-~~w~~~~~~c-----~w~~v~c~~~-----~~l~~L~l~~~~l~~~~~~~l~~l~~ 77 (479)
..+..++|..+|..+|+.+..+. .+|. + |+| .|.||.|... ..++.|+|+++.+.|.+|+.++.+++
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~-g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLRFGWN-G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcccCCCC-C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 33456778999999999987654 4896 4 344 6999999521 25999999999999999999999999
Q ss_pred CCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccC
Q 047549 78 LCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDV 142 (479)
Q Consensus 78 L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 142 (479)
|+.|+|++|.+.+..|.. ++|++|++++|.+++ .+|..++++++|++|++++|.+.+.+|..+
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--CCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 999999999887644321 444444444444443 344444444444444444444444444443
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=2.9e-13 Score=121.38 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCCCCCEEEccCCcCccccchh----hhcCCCCCeeeccCCcCccccCcc-------------ccCCCCCCcEEEccCCc
Q 047549 176 KLANLKSLKLHTNSLSGFLPQF----LMNCTNLITLNLRINNFRGDLSAY-------------NFSTLHNLHTIDLGNNN 238 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~-------------~~~~l~~L~~L~l~~n~ 238 (479)
.+++|++++||+|.+....+.. +..+..|+.|+|.+|.+. ..... -...-+.|+++...+|+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4456666666666554332222 344566666666666553 11110 12334566666666666
Q ss_pred cccc----CCccCcCCCCCCEEEccCCccccc----ChhhhhccCCCCEEEccCCCCC
Q 047549 239 FTGS----FPLTLTSCMFLTAIRLSGNKIEEQ----ISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 239 l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+... +...+...+.|+.+.++.|.|... ....+..+++|+.|||..|.++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 5421 223344455666666666655432 1234455566666666666554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=5.2e-13 Score=126.91 Aligned_cols=194 Identities=26% Similarity=0.372 Sum_probs=146.4
Q ss_pred cCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCC
Q 047549 73 GKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLE 149 (479)
Q Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 149 (479)
..+..-...|++.|++..++..+ .+|+.+.+.+|.+. .+|..+.++..|..++++.|+++ .+|..++.++ |+
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r---~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR---TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce---ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce
Confidence 34555677888999888877655 67888899999888 78888999999999999999988 7787777664 78
Q ss_pred EEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCC
Q 047549 150 DISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNL 229 (479)
Q Consensus 150 ~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 229 (479)
.|.+++|+++ .+|+. ++..+.|..|+.+.|.+. .+|..++++.+|+.|.++.|++. .+|. .+.. =.|
T Consensus 147 vli~sNNkl~-~lp~~--------ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~-El~~-LpL 213 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEE--------IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELCS-LPL 213 (722)
T ss_pred eEEEecCccc-cCCcc--------cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHhC-Cce
Confidence 8888888887 44544 345678888888888887 46777888888888888888886 6665 3443 347
Q ss_pred cEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhc---cCCCCEEEccCCC
Q 047549 230 HTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA---LVSVSYLSINNNN 286 (479)
Q Consensus 230 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n~ 286 (479)
..||++.|++. .+|..|.+|+.|++|.|.+|.++. .|..++. ..=.++|+..-++
T Consensus 214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 78888888888 788888888889999998888876 3333322 1223566666553
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=9.6e-13 Score=125.13 Aligned_cols=174 Identities=26% Similarity=0.482 Sum_probs=118.5
Q ss_pred CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcE
Q 047549 226 LHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRM 305 (479)
Q Consensus 226 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~ 305 (479)
+..-...+++.|++. .+|..+..+..|+.+.++.|.+.. +|..++++..|.+++|+.|++...|..+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~lp~~lC---------- 141 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSHLPDGLC---------- 141 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhcCChhhh----------
Confidence 444455677777776 677777777777777777777765 66777777778888888877776553211
Q ss_pred EEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEE
Q 047549 306 LLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYID 385 (479)
Q Consensus 306 L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 385 (479)
.+ -|+.|-+++|+++ .+|+.++...+|..||.+.|.+. .+|..+..+.+|+.|+
T Consensus 142 -----------------------~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 142 -----------------------DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred -----------------------cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 11 2666777777776 56666677777777777777776 5666677777777777
Q ss_pred ccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcc
Q 047549 386 LSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNV 465 (479)
Q Consensus 386 L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~ 465 (479)
++.|++. .+|+..+.++-. .||+|.|+++ .+|..|.+|
T Consensus 196 vrRn~l~-~lp~El~~LpLi----------------------------------------~lDfScNkis-~iPv~fr~m 233 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSLPLI----------------------------------------RLDFSCNKIS-YLPVDFRKM 233 (722)
T ss_pred Hhhhhhh-hCCHHHhCCcee----------------------------------------eeecccCcee-ecchhhhhh
Confidence 7777777 555555433322 2677777777 777777777
Q ss_pred cccCeeeCCCCCCC
Q 047549 466 MFLHVLDLSLNNFS 479 (479)
Q Consensus 466 ~~L~~L~ls~N~l~ 479 (479)
+.|++|-|.+|.|+
T Consensus 234 ~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQ 247 (722)
T ss_pred hhheeeeeccCCCC
Confidence 77777777777763
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=8.5e-12 Score=115.20 Aligned_cols=218 Identities=20% Similarity=0.174 Sum_probs=127.0
Q ss_pred CCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc--cchhhhcCCCCCeeeccCCcCccccCc
Q 047549 143 SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF--LPQFLMNCTNLITLNLRINNFRGDLSA 220 (479)
Q Consensus 143 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~ 220 (479)
+++.+|+++.+.++.+.....+. ....+++++.|+|++|-++.. +......+|+|+.|+++.|.+......
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~-------~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEE-------YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecCccccccchhh-------hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 45666777777666554322211 134567777777777766543 334456678888888888877532222
Q ss_pred cccCCCCCCcEEEccCCccccc-CCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccC
Q 047549 221 YNFSTLHNLHTIDLGNNNFTGS-FPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMG 299 (479)
Q Consensus 221 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 299 (479)
..-..+++|+.|.++.|.++.. +...+..+|+|+.|++.+|............+..|+.|||++|.+.+++ .....+.
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-~~~~~~~ 269 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-QGYKVGT 269 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-ccccccc
Confidence 2223567777888887777531 2223455677788888877533323333445667778888888776554 2344566
Q ss_pred CCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceec-CchhhcCCCCCCEEeCCCCccc
Q 047549 300 CKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ-IPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 300 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
++.|+.|+++.+.+...-............+++|++|++..|++.+. ....+..+++|+.|.+..|.+.
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 67777777777665543221111111123567788888888877521 1123445566677776666665
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.9e-12 Score=116.74 Aligned_cols=192 Identities=22% Similarity=0.255 Sum_probs=93.6
Q ss_pred CCCCCCCcEEEcccccccc--CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc-c
Q 047549 118 LGNFSKLQTFRAGFSYLSG--SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF-L 194 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~-~ 194 (479)
...|++++.||++.|-+.. .+......+++|+.|+++.|++........ -..+++|+.|.++.|.++.. +
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-------~~~l~~lK~L~l~~CGls~k~V 214 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-------TLLLSHLKQLVLNSCGLSWKDV 214 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-------hhhhhhhheEEeccCCCCHHHH
Confidence 3345555555555554331 111122345555555555555442211111 11345556666666655522 2
Q ss_pred chhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccC-CccCcCCCCCCEEEccCCcccccC-hhh--
Q 047549 195 PQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF-PLTLTSCMFLTAIRLSGNKIEEQI-SPT-- 270 (479)
Q Consensus 195 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~-~~~-- 270 (479)
...+..+|+|+.|++..|... .+.......+..|++|+|++|.+...- -.....++.|..|+++.+.+..+- |+.
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s 293 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES 293 (505)
T ss_pred HHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc
Confidence 223345566666666666321 111122334455666666666554221 123455566666666666554432 111
Q ss_pred ---hhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCC
Q 047549 271 ---ILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIP 318 (479)
Q Consensus 271 ---~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (479)
...+++|++|++..|++..++. ...+..+++|+.|.+..|.++..-.
T Consensus 294 ~~kt~~f~kL~~L~i~~N~I~~w~s-l~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISENNIRDWRS-LNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred hhhhcccccceeeecccCccccccc-cchhhccchhhhhhccccccccccc
Confidence 2345667777777777755432 2344455666666666666654433
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=1e-10 Score=114.82 Aligned_cols=178 Identities=30% Similarity=0.447 Sum_probs=80.4
Q ss_pred CCCcEEEccccccccCCCccCCCCC-CCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 122 SKLQTFRAGFSYLSGSIPDDVSAAA-SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
+.++.|++.++.++ .++....... +|++|++++|.+.... . .+..+++|+.|++++|+++. ++.....
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~-~--------~~~~l~~L~~L~l~~N~l~~-l~~~~~~ 184 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP-S--------PLRNLPNLKNLDLSFNDLSD-LPKLLSN 184 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchhhhh-h--------hhhccccccccccCCchhhh-hhhhhhh
Confidence 44444444444444 3333333332 4444444444444221 0 02334455555555555442 2332334
Q ss_pred CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEE
Q 047549 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYL 280 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (479)
.+.|+.|++++|++. .++. .......|+++.+++|++. ..+..+..+.++..+.+.+|++.. .+..++.++++++|
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L 260 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETL 260 (394)
T ss_pred hhhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhcccccccee
Confidence 445555555555554 3332 1122333555555555322 233344444555555555554433 13444455555555
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCC
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIP 318 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (479)
++++|.++.++. +....+++.|+++++.+....+
T Consensus 261 ~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 261 DLSNNQISSISS----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccccc----ccccCccCEEeccCccccccch
Confidence 555555554432 4445555555555555554443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=1.8e-10 Score=112.97 Aligned_cols=193 Identities=27% Similarity=0.386 Sum_probs=122.2
Q ss_pred eeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCC-CCcEEEccccccccCCCccCCCCCCCCEEECCC
Q 047549 80 HLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFS-KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPV 155 (479)
Q Consensus 80 ~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 155 (479)
.+++..+++....... +.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~---~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT---DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc---cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4666666653322221 45777777777777 5666666663 7777777777776 5555667777777777777
Q ss_pred CcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEcc
Q 047549 156 NQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235 (479)
Q Consensus 156 n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 235 (479)
|++....+. .+..+.|+.|++++|+++ .+|........|+++.+++|.+. ..+. .+..+.++..+.+.
T Consensus 173 N~l~~l~~~---------~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l~ 240 (394)
T COG4886 173 NDLSDLPKL---------LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGLELS 240 (394)
T ss_pred chhhhhhhh---------hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch-hhhhcccccccccC
Confidence 777644332 114567777777777777 34554445556777777777433 2221 45666677777777
Q ss_pred CCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCC
Q 047549 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291 (479)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 291 (479)
+|++. ..+..+..++++++|++++|.++...+ +....+++.+++++|.+....
T Consensus 241 ~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 241 NNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred Cceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 77665 335556666777777777777766443 666777777777777766443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=1.9e-11 Score=107.62 Aligned_cols=135 Identities=20% Similarity=0.228 Sum_probs=104.5
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
..++.|+++|+++|.|+ .+.++..-.|+++.|++++|.+. .+. .+..+++|+.||+++|.++ .+..+-..+-+++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 34577889999999888 56777777899999999999887 444 4777899999999999887 4444445677889
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccC
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 317 (479)
+|.+++|.+.. ...+..+-+|..||+.+|++..+.. ...++++|.|+++.+.+|.+.+..
T Consensus 356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeehhhhhHhh--hhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccc
Confidence 99999998854 2457778889999999999886643 356778888888888887776543
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=6.7e-12 Score=112.76 Aligned_cols=242 Identities=19% Similarity=0.263 Sum_probs=160.1
Q ss_pred CCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCC---cCccccc-------hhhhcCCCCCeeeccCCcC
Q 047549 145 AASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN---SLSGFLP-------QFLMNCTNLITLNLRINNF 214 (479)
Q Consensus 145 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n---~l~~~~~-------~~l~~l~~L~~L~l~~n~l 214 (479)
...++.+++++|.+.......+++. +...++|+..++++- .....+| ..+-.+++|+++++|+|.+
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~----L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKV----LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHH----HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4455566666665543333222221 333445555555532 1111233 3455778999999999988
Q ss_pred ccccCc---cccCCCCCCcEEEccCCccccc-------------CCccCcCCCCCCEEEccCCcccccC----hhhhhcc
Q 047549 215 RGDLSA---YNFSTLHNLHTIDLGNNNFTGS-------------FPLTLTSCMFLTAIRLSGNKIEEQI----SPTILAL 274 (479)
Q Consensus 215 ~~~~~~---~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l 274 (479)
....+. ..+..+..|++|++.+|.+.-. ...-....+.|+.+....|++.... ...|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 632221 2356789999999999987421 1122345678999999999986543 3456667
Q ss_pred CCCCEEEccCCCCCC--CCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc----
Q 047549 275 VSVSYLSINNNNLSN--ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP---- 348 (479)
Q Consensus 275 ~~L~~L~L~~n~l~~--~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---- 348 (479)
+.|+.+.++.|.+.. +......+..|++|+.|++..|-++......... ....+++|+.+++++|.+...-.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak--aL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK--ALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH--HhcccchheeecccccccccccHHHHH
Confidence 899999999998863 2223367889999999999999887543322221 12356789999999998875432
Q ss_pred hhh-cCCCCCCEEeCCCCccccc----cCcccCCCCCCcEEEccCCccc
Q 047549 349 TWL-GKLKKLQVLDLGSNQITGP----IPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 349 ~~l-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
..+ ...+.|+.+.+.+|.|+.. +..++...+.|..|+|++|++.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 233 3468999999999998732 3345566889999999999994
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2.8e-10 Score=95.94 Aligned_cols=107 Identities=29% Similarity=0.344 Sum_probs=26.8
Q ss_pred CCCCCcEEEccccccccCCCccCC-CCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhh
Q 047549 120 NFSKLQTFRAGFSYLSGSIPDDVS-AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFL 198 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l 198 (479)
+..++++|++++|.|+ .+. .+. .+.+|+.|++++|.++.... +..++.|++|++++|.++.. ...+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~----------l~~L~~L~~L~L~~N~I~~i-~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEG----------LPGLPRLKTLDLSNNRISSI-SEGL 83 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT--------------TT--EEE--SS---S--CHHH
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccC----------ccChhhhhhcccCCCCCCcc-ccch
Confidence 4445667777777666 332 343 45666677777666653211 34456666666666666643 2223
Q ss_pred -hcCCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCccc
Q 047549 199 -MNCTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFT 240 (479)
Q Consensus 199 -~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~ 240 (479)
..+++|+.|++++|++. .+.. ..+..+++|++|++.+|+++
T Consensus 84 ~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred HHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCccc
Confidence 34666666666666665 2211 12334444444444444443
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=5.1e-10 Score=115.09 Aligned_cols=80 Identities=36% Similarity=0.596 Sum_probs=65.4
Q ss_pred CccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccc
Q 047549 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~ 411 (479)
.++.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+.++++|+.++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888764433
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=3.7e-10 Score=95.19 Aligned_cols=105 Identities=30% Similarity=0.339 Sum_probs=27.8
Q ss_pred CCCeeeccCCcCccccCccccC-CCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEE
Q 047549 203 NLITLNLRINNFRGDLSAYNFS-TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLS 281 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 281 (479)
++++|++++|.++ .+. .++ .+.+|+.|++++|.++. +. .+..++.|++|++++|.++...+.....+++|+.|.
T Consensus 20 ~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4555555555554 332 222 34556666666666552 22 345556666666666666553322223466666666
Q ss_pred ccCCCCCCCCCccccccCCCCCcEEEccCccc
Q 047549 282 INNNNLSNITGAIGILMGCKNLRMLLLCKIFF 313 (479)
Q Consensus 282 L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~ 313 (479)
+++|++.++.. +..+..+++|+.|++.+|.+
T Consensus 95 L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNE-LEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCC-CGGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCChHH-hHHHHcCCCcceeeccCCcc
Confidence 66666665532 23444455555555544444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=7.5e-11 Score=103.88 Aligned_cols=217 Identities=20% Similarity=0.159 Sum_probs=127.3
Q ss_pred CEEEEECCCCC--------ccccccccccCCCCCCeeecCCCc---CCCcCCCCCCCCEEEcCCcccccCC-CCCCcCCC
Q 047549 53 QVTHLWLPDRG--------LRGSIYPFTGKLTHLCHLNLSHNH---LSFLSPSVPFLSILDFSHNYFRGHC-QLPSGLGN 120 (479)
Q Consensus 53 ~l~~L~l~~~~--------l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~~L~~L~L~~n~l~~~~-~l~~~~~~ 120 (479)
+++.|.+++.. +...+|-.+..+++|+.+.++++. |.++...-|.|.++...+..+.... -+|.
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe---- 258 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPE---- 258 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccch----
Confidence 56677665532 123345566778899999998874 4444444478888888776554211 1111
Q ss_pred CCCCcEEEcccc---ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 121 FSKLQTFRAGFS---YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 121 l~~L~~L~l~~n---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
.. ..|..+. -.+|..-..+.....|+++++++|.++... ++ ..-.|+++.|++++|.++.. ..
T Consensus 259 -~~--~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD-ES--------vKL~Pkir~L~lS~N~i~~v--~n 324 (490)
T KOG1259|consen 259 -TI--LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID-ES--------VKLAPKLRRLILSQNRIRTV--QN 324 (490)
T ss_pred -hh--hcCccCCCCCccCCceEEecchHhhhhhccccccchhhhh-hh--------hhhccceeEEeccccceeee--hh
Confidence 11 1111111 111122222223345677777777666322 22 23357777777777777632 33
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccC-hhhhhccCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQI-SPTILALVS 276 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~ 276 (479)
+..+++|+.|++++|.++ .+.. .-..+.++++|.+++|.+... ..+..+-+|..||+++|.|.... ...+++++.
T Consensus 325 La~L~~L~~LDLS~N~Ls-~~~G-wh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLA-ECVG-WHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred hhhcccceEeecccchhH-hhhh-hHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccH
Confidence 666777788888877776 3332 334567777788887777522 23555667778888888776532 245677788
Q ss_pred CCEEEccCCCCCCCC
Q 047549 277 VSYLSINNNNLSNIT 291 (479)
Q Consensus 277 L~~L~L~~n~l~~~~ 291 (479)
|+.+.+.+|.+..++
T Consensus 401 LE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 401 LETLRLTGNPLAGSV 415 (490)
T ss_pred HHHHhhcCCCccccc
Confidence 888888888777554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.7e-09 Score=74.94 Aligned_cols=61 Identities=36% Similarity=0.559 Sum_probs=50.9
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSI 391 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 391 (479)
++|++|++++|+++...+..|..+++|++|++++|++....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888866667888888888888888888877778888888888888888875
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=1e-09 Score=107.90 Aligned_cols=196 Identities=30% Similarity=0.333 Sum_probs=89.5
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEE
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+..++.+.+..|.+.. .-..+..+.+++.+++.+|.+. .+.. .+..+++|++|++++|.|+... .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hccc-chhhhhcchheecccccccccc--chhhccchhhh
Confidence 3444455555555552 2223445556666666666655 2321 1445566666666666655332 23444456666
Q ss_pred EccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEE
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVL 336 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L 336 (479)
++++|.++.. ..+..+..|+.+++++|.++.+... . ...+..++.+.+.+|.+....... ....+..+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~~--------~~~~l~~~ 213 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGLD--------LLKKLVLL 213 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccchH--------HHHHHHHh
Confidence 6666655442 2233355555666666655544321 0 234445555555554433221110 11223333
Q ss_pred EeeCCcceecCchhhcCCCC--CCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 337 GIGNCEIKGQIPTWLGKLKK--LQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 337 ~l~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++..|.++..- .+..+.. |+.+++++|++. ..+..+..+..+..|++..|++.
T Consensus 214 ~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 214 SLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 44444444211 1122222 455555555554 22233444455555555555544
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.7e-09 Score=106.28 Aligned_cols=246 Identities=25% Similarity=0.296 Sum_probs=141.6
Q ss_pred CCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhh
Q 047549 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~ 199 (479)
.+..++.+.++.|.+. .+-..+..+.+|+.+++.+|.+...... +..+++|++|++++|.|+.. ..+.
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~---------l~~~~~L~~L~ls~N~I~~i--~~l~ 137 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIENL---------LSSLVNLQVLDLSFNKITKL--EGLS 137 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcccc---------hhhhhcchheeccccccccc--cchh
Confidence 4566666777777776 3334466777888888888877643321 34467778888888877743 2345
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCcc-CcCCCCCCEEEccCCcccccChhhhhccCCCC
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQISPTILALVSVS 278 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 278 (479)
.++.|+.|++.+|.+. .+. .+..++.|+.+++++|.++..-+ . ...+.+++.+.+.+|.+... ..+..+..+.
T Consensus 138 ~l~~L~~L~l~~N~i~-~~~--~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~ 211 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLIS-DIS--GLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLV 211 (414)
T ss_pred hccchhhheeccCcch-hcc--CCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHH
Confidence 5666777778777776 343 34457777777777777763322 1 45667777777777776543 2233344444
Q ss_pred EEEccCCCCCCCCCccccccCCC--CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCC
Q 047549 279 YLSINNNNLSNITGAIGILMGCK--NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKK 356 (479)
Q Consensus 279 ~L~L~~n~l~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 356 (479)
.+++..|.++.+.+. .... .|+.+++++|++.... ... ..+..+..+++.+|++... ..+.....
T Consensus 212 ~~~l~~n~i~~~~~l----~~~~~~~L~~l~l~~n~i~~~~-~~~------~~~~~l~~l~~~~n~~~~~--~~~~~~~~ 278 (414)
T KOG0531|consen 212 LLSLLDNKISKLEGL----NELVMLHLRELYLSGNRISRSP-EGL------ENLKNLPVLDLSSNRISNL--EGLERLPK 278 (414)
T ss_pred HhhcccccceeccCc----ccchhHHHHHHhcccCcccccc-ccc------cccccccccchhhcccccc--ccccccch
Confidence 556666666644331 1222 2666666666654321 000 1345566666666666521 22344455
Q ss_pred CCEEeCCCCccccc---cCcc-cCCCCCCcEEEccCCcccccCC
Q 047549 357 LQVLDLGSNQITGP---IPGW-LGNMPNLFYIDLSYNSISGEFP 396 (479)
Q Consensus 357 L~~L~Ls~n~l~~~---~~~~-~~~l~~L~~L~L~~N~l~~~~p 396 (479)
+..+....|.+... .... ....+.+..+.+..|.+....+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 279 LSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred HHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 55566666655421 1111 3445666667777666664443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.8e-08 Score=69.76 Aligned_cols=59 Identities=31% Similarity=0.443 Sum_probs=26.1
Q ss_pred CCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCC
Q 047549 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (479)
+|++|++++|+++...+..|..+++|++|++++|.++.+.+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443333344444444444444444444444444444444444444443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=3.5e-08 Score=104.08 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=37.7
Q ss_pred CCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCcc
Q 047549 142 VSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAY 221 (479)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 221 (479)
|..++.|++||+++|.-.+..|..+ +.+-+|++|+++++.+. .+|..+.++..|.+|++..+.....++ .
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I--------~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~ 636 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSI--------GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-G 636 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHH--------hhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-c
Confidence 3445555555555544333444432 22344455555555544 344555555555555554443321221 1
Q ss_pred ccCCCCCCcEEEccC
Q 047549 222 NFSTLHNLHTIDLGN 236 (479)
Q Consensus 222 ~~~~l~~L~~L~l~~ 236 (479)
....+.+|++|.+..
T Consensus 637 i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPR 651 (889)
T ss_pred hhhhcccccEEEeec
Confidence 223344555554433
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=1.5e-08 Score=106.78 Aligned_cols=125 Identities=18% Similarity=0.284 Sum_probs=67.0
Q ss_pred CCCCeeecCCCcCCCcCCCC--CCCCEEEcCCcc--cccCCCCCC-cCCCCCCCcEEEccccccccCCCccCCCCCCCCE
Q 047549 76 THLCHLNLSHNHLSFLSPSV--PFLSILDFSHNY--FRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLED 150 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~~--~~L~~L~L~~n~--l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 150 (479)
...|.+.+-+|.+....... +.|++|-+..|. +. .++. .|..++.|++||+++|.--+.+|..++++-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~---~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL---EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhh---hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 44555555555544333222 456666666654 22 2222 3455666666666665544466666666666666
Q ss_pred EECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 151 ISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 151 L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
|++++..+. .+|.+ +++++.|.+|++..+.....++.....+++|++|.+...
T Consensus 600 L~L~~t~I~-~LP~~--------l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSG--------LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc-ccchH--------HHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 666666555 33443 334556666666655443334555555666666665443
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=4.7e-09 Score=92.63 Aligned_cols=109 Identities=21% Similarity=0.182 Sum_probs=56.6
Q ss_pred CCCCCCeeecCCCcCCCcCCC------CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCC
Q 047549 74 KLTHLCHLNLSHNHLSFLSPS------VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAAS 147 (479)
Q Consensus 74 ~l~~L~~L~L~~n~l~~~~~~------~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 147 (479)
...-++.|.+.++.|...... ...++.+||.+|.++....+...+.++|.|++|+++.|.+...+...-....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 333444555555544432211 15566666666666544444455567777777777777766332211134556
Q ss_pred CCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCc
Q 047549 148 LEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189 (479)
Q Consensus 148 L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~ 189 (479)
|++|.+.+..+......++ +..+|.+++|+++.|+
T Consensus 123 l~~lVLNgT~L~w~~~~s~-------l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSS-------LDDLPKVTELHMSDNS 157 (418)
T ss_pred eEEEEEcCCCCChhhhhhh-------hhcchhhhhhhhccch
Confidence 6666666655543322221 3345555555555553
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.48 E-value=6.6e-09 Score=90.56 Aligned_cols=168 Identities=18% Similarity=0.156 Sum_probs=90.9
Q ss_pred CCCCCCCCEEEccCCcCccccchhh----hcCCCCCeeeccCCcCccccCccc-------------cCCCCCCcEEEccC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFL----MNCTNLITLNLRINNFRGDLSAYN-------------FSTLHNLHTIDLGN 236 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~~-------------~~~l~~L~~L~l~~ 236 (479)
+.+||+|+..+|++|.+....|..+ +.-+.|..|.+++|.+. .+.... ..+-|.|+++...+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3456666666666666654444333 34556667777766653 222111 13456788888888
Q ss_pred CcccccCCc-----cCcCCCCCCEEEccCCcccccC-----hhhhhccCCCCEEEccCCCCCCCCCcc--ccccCCCCCc
Q 047549 237 NNFTGSFPL-----TLTSCMFLTAIRLSGNKIEEQI-----SPTILALVSVSYLSINNNNLSNITGAI--GILMGCKNLR 304 (479)
Q Consensus 237 n~l~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~l~~~~~L~ 304 (479)
|++.. .+. .+..-..|+.+.+.+|.|.... ...+..+.+|+.||++.|.++.-...+ .+++.++.|+
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 87752 221 1222257888888888775431 122345678888888888776332211 3445556666
Q ss_pred EEEccCccccccCCCCccccccccccCCccEEEeeCCcc
Q 047549 305 MLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 305 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.|.+..|.+.........-.+.....++|..|...+|.+
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 666666655443322222122222344555555555544
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.2e-09 Score=96.43 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=73.7
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC--------CCCCEEEcCCcccccCCCCCCcCCCCCCC
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV--------PFLSILDFSHNYFRGHCQLPSGLGNFSKL 124 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------~~L~~L~L~~n~l~~~~~l~~~~~~l~~L 124 (479)
.=+.+|+.+-++. |..++.+..=..+.++.-+..-..|.+ ..|++|||++..++.. .+-..++.|.+|
T Consensus 137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~s-tl~~iLs~C~kL 212 (419)
T KOG2120|consen 137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVS-TLHGILSQCSKL 212 (419)
T ss_pred ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHH-HHHHHHHHHHhh
Confidence 3577888776654 445555444333333332222112211 4688888888877531 233345677888
Q ss_pred cEEEccccccccCCCccCCCCCCCCEEECCCC-cccccCCccccccCCCCCCCCCCCCEEEccCCcCc
Q 047549 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVN-QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191 (479)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~ 191 (479)
+.|.+.++.+.+.+...+++..+|+.++++.+ .++. .++. +-+..++.|..|+++.|.+.
T Consensus 213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~---n~~~----ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE---NALQ----LLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred hhccccccccCcHHHHHHhccccceeeccccccccch---hHHH----HHHHhhhhHhhcCchHhhcc
Confidence 88888888887777777777778888887765 2221 1110 01345566666666666544
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=6.1e-09 Score=102.43 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
.|.+.+.++|.+. .+..++.-++.|++|+|+.|++... +.+..+++|++||+++|.+.-..--+ -..
T Consensus 165 ~L~~a~fsyN~L~---~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~--------~~g 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLV---LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLS--------MVG 231 (1096)
T ss_pred hHhhhhcchhhHH---hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccc--------hhh
Confidence 4566666666665 3444555566666777777766532 25566666777777766655221111 122
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcc
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 239 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 239 (479)
+. |+.|.+++|.++. -..+.++.+|+.||+++|-+.+.-.-..+..+..|+.|+|.||++
T Consensus 232 c~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 22 6666666666652 234556666666666666554321111233445566666666665
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.1e-08 Score=90.45 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=37.7
Q ss_pred CCccEEEeeCCcce--ec-CchhhcCCCCCCEEeCCCCccc-cccCcccCCCCCCcEEEccCCcccccCCcc---ccCCc
Q 047549 331 QNLVVLGIGNCEIK--GQ-IPTWLGKLKKLQVLDLGSNQIT-GPIPGWLGNMPNLFYIDLSYNSISGEFPKE---FCGLP 403 (479)
Q Consensus 331 ~~L~~L~l~~n~l~--~~-~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~ 403 (479)
++|..|+++|+.-. .. +..-...+++|..|||++|... ...-..|-+++.|++|.++.|- +++|+. +...+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCc
Confidence 45555555554321 11 1112234566666666655432 2222234455566666665542 233332 34455
Q ss_pred ccccccccccc
Q 047549 404 ALALQEAKNRA 414 (479)
Q Consensus 404 ~L~~l~~~~~~ 414 (479)
+|.+|+..+..
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 56655554443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.6e-07 Score=83.11 Aligned_cols=84 Identities=25% Similarity=0.357 Sum_probs=43.1
Q ss_pred CCCCCEEEccCCcCccc--cchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccccc-CCccCcCCCCC
Q 047549 177 LANLKSLKLHTNSLSGF--LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS-FPLTLTSCMFL 253 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L 253 (479)
.+.+++++|.+|.++.. +...+.++|.|+.|+++.|++...+.... ....+|++|-+.+..+... ....+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 44566666666666532 33334566666666666666654333211 2445666666665544321 12223444555
Q ss_pred CEEEccCC
Q 047549 254 TAIRLSGN 261 (479)
Q Consensus 254 ~~L~l~~n 261 (479)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555555
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=3.6e-08 Score=97.13 Aligned_cols=205 Identities=20% Similarity=0.177 Sum_probs=106.8
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCC-CCCCEEECCCC--cccccCCccccccCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAA-ASLEDISLPVN--QLSGAISNGVVNLTSL 172 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n--~l~~~~~~~~~~l~~l 172 (479)
++++.|.+-+-.-.+- .-|-.+..+..|++|.++++.+.. ...+..+ .+|++|.-.+. .+...+....+.+..
T Consensus 84 qkt~~lkl~~~pa~~p-t~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~n- 159 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDP-TEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISN- 159 (1096)
T ss_pred hhheeeeecccCCCCC-CCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccccc-
Confidence 4555555555443321 225567778899999999988762 1112111 23444432211 000001111111000
Q ss_pred CCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCC
Q 047549 173 NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF 252 (479)
Q Consensus 173 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 252 (479)
-.....|...+.+.|.++ .+..++.-++.++.|+++.|+++ ... .+..+++|++|||+.|.++ .+|..-..-..
T Consensus 160 -s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 160 -SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK 233 (1096)
T ss_pred -chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhc-cccccchhhhh
Confidence 001234455555666665 44555666677777777777766 333 4566677777777777766 44432111123
Q ss_pred CCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccc
Q 047549 253 LTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFF 313 (479)
Q Consensus 253 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~ 313 (479)
|+.|.+++|.++.. ..+.++.+|+-||+++|-+.+... ...+..+..|+.|++.+|.+
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcc
Confidence 77777777766543 335566677777777776654322 23344555666666666654
No 50
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.12 E-value=2.7e-06 Score=53.69 Aligned_cols=36 Identities=36% Similarity=0.855 Sum_probs=27.3
Q ss_pred hhhHHHHHHhHhcCCCCC----CCCCCC--CCCccceeEEeC
Q 047549 14 QIDQETLLSLNFNASNPP----LNWSFS--TDCCLWEGIKCD 49 (479)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~----~~w~~~--~~~c~w~~v~c~ 49 (479)
++|+++|++||.++..++ .+|..+ .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999999532 899986 799999999995
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=6e-07 Score=78.60 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=91.5
Q ss_pred CCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCc---cc-------cchhhhcCCCCCeeeccCCcC
Q 047549 145 AASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS---GF-------LPQFLMNCTNLITLNLRINNF 214 (479)
Q Consensus 145 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~---~~-------~~~~l~~l~~L~~L~l~~n~l 214 (479)
+..+..+++|+|.+.......+++. +.+-.+|+..++++-... .. +..++.+||+|+..+++.|.+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~----ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNV----IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHH----HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 4556666666666554443333332 334455666555543211 11 234556789999999999988
Q ss_pred ccccCc---cccCCCCCCcEEEccCCccccc----CCc---------cCcCCCCCCEEEccCCcccccChhh----hhcc
Q 047549 215 RGDLSA---YNFSTLHNLHTIDLGNNNFTGS----FPL---------TLTSCMFLTAIRLSGNKIEEQISPT----ILAL 274 (479)
Q Consensus 215 ~~~~~~---~~~~~l~~L~~L~l~~n~l~~~----~~~---------~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l 274 (479)
....+. ..++....|.+|.+.+|.+--. +.. -...-|.|+.+....|++....... +..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 644443 2356678889999988876311 111 1234467888888887775432221 2222
Q ss_pred CCCCEEEccCCCCCCCCCc---cccccCCCCCcEEEccCcccc
Q 047549 275 VSVSYLSINNNNLSNITGA---IGILMGCKNLRMLLLCKIFFH 314 (479)
Q Consensus 275 ~~L~~L~L~~n~l~~~~~~---~~~l~~~~~L~~L~l~~n~~~ 314 (479)
.+|+.+.+..|.|..-.-. ...+..+.+|+.|++..|-++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 4677777777777621000 012334455555555555444
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=7.2e-07 Score=69.94 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=48.8
Q ss_pred CccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccc
Q 047549 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~ 411 (479)
.|...++++|.+....+......+.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.++-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 4555666666666333332334456667777777776 45555667777777777777776 556665556666665555
Q ss_pred ccc
Q 047549 412 NRA 414 (479)
Q Consensus 412 ~~~ 414 (479)
++.
T Consensus 132 ~na 134 (177)
T KOG4579|consen 132 ENA 134 (177)
T ss_pred CCc
Confidence 443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.7e-06 Score=51.49 Aligned_cols=36 Identities=53% Similarity=0.706 Sum_probs=18.5
Q ss_pred CCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555555
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=3.8e-07 Score=71.46 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=55.5
Q ss_pred ccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCc
Q 047549 329 AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
.++.++.|++++|.+. .+|..+..++.|+.++++.|.+. ..|..+..+.++-+|+..+|.+. .+|.
T Consensus 75 kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 75 KFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred ccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence 4567888999999998 67878999999999999999998 67777777899999999999887 4443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.1e-05 Score=49.71 Aligned_cols=38 Identities=34% Similarity=0.558 Sum_probs=31.7
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 369 (479)
++|++|++++|+++ .+|..++++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46899999999999 566679999999999999999984
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=7.5e-05 Score=62.92 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=28.3
Q ss_pred CcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcc
Q 047549 247 LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIF 312 (479)
Q Consensus 247 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~ 312 (479)
|..++.|.+|.+..|.|+.+.|..-..+++|..|.+.+|.+..+.+ +..+..||+|++|.+-+|.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchhccCCccceeeecCCc
Confidence 3334444444444444444433333334444555555544443321 2334444455555444443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=7.5e-05 Score=62.92 Aligned_cols=103 Identities=24% Similarity=0.266 Sum_probs=60.8
Q ss_pred CCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCc--cccCcccc
Q 047549 146 ASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR--GDLSAYNF 223 (479)
Q Consensus 146 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~ 223 (479)
.+...+++++|.+.... .|..++.|.+|.+.+|.|+.+-|.--.-+++|..|.+.+|.+. |++. .+
T Consensus 42 d~~d~iDLtdNdl~~l~----------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~--pL 109 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD----------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD--PL 109 (233)
T ss_pred cccceecccccchhhcc----------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc--hh
Confidence 45566777777655221 1455677777777777777655554455667777777777765 2222 34
Q ss_pred CCCCCCcEEEccCCcccccC---CccCcCCCCCCEEEccC
Q 047549 224 STLHNLHTIDLGNNNFTGSF---PLTLTSCMFLTAIRLSG 260 (479)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~~ 260 (479)
..+|+|++|.+-+|+++..- ...+..+++|+.||+++
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 55667777777777665321 11234455666666554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.2e-05 Score=81.13 Aligned_cols=139 Identities=21% Similarity=0.239 Sum_probs=84.4
Q ss_pred CCCcEEEcccccc-ccCCCccCC-CCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhh
Q 047549 122 SKLQTFRAGFSYL-SGSIPDDVS-AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199 (479)
Q Consensus 122 ~~L~~L~l~~n~~-~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~ 199 (479)
.+|++|++++... ....+..++ .+|.|+.|.+++-.+.... +..+ ...+|+|..||+++++++.. ..++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~l----c~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQL----CASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHHH----hhccCccceeecCCCCccCc--HHHh
Confidence 4677777766442 112222232 3677888877775554322 1111 45678888888888888743 6677
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccC--C----ccCcCCCCCCEEEccCCcccccChh
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF--P----LTLTSCMFLTAIRLSGNKIEEQISP 269 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~----~~~~~~~~L~~L~l~~n~l~~~~~~ 269 (479)
.+++|+.|.+.+-.+...-.-..+-.+++|+.||+|..+..... . +.-..+|+|+.||.+++.+.+...+
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 88888888887766652111123556888888888876543211 1 1123467888888888877665443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00031 Score=67.11 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=15.2
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCC
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSN 365 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 365 (479)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35555555555543 2332222 35555555544
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00034 Score=66.86 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=25.1
Q ss_pred CCCCEEeCCCCccccccCcccCCCCCCcEEEccCCc
Q 047549 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 390 (479)
++|++|++++|... ..|..+. .+|+.|+++.+.
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 68999999999876 3454433 689999998764
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=4.3e-05 Score=78.97 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=15.3
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCC
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 237 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 237 (479)
++|+|..||+++.+++ .+ .+++.+++|+.|.+.+-
T Consensus 171 sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNIS-NL--SGISRLKNLQVLSMRNL 205 (699)
T ss_pred ccCccceeecCCCCcc-Cc--HHHhccccHHHHhccCC
Confidence 3444444444444443 22 13444444444444433
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.53 E-value=1.3e-06 Score=81.17 Aligned_cols=280 Identities=19% Similarity=0.144 Sum_probs=123.7
Q ss_pred CCCeeecCCCcCCCcCC------CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc-ccccCCCc-cCCCCCCC
Q 047549 77 HLCHLNLSHNHLSFLSP------SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS-YLSGSIPD-DVSAAASL 148 (479)
Q Consensus 77 ~L~~L~L~~n~l~~~~~------~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n-~~~~~~~~-~~~~l~~L 148 (479)
.|+.|.+++++-.+..+ ..|++++|++.++........-..-..|++|+++++..+ .++...-+ .-..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46777777664433322 126677776666642111011111235777777777773 33332222 22356777
Q ss_pred CEEECCCCc-ccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhh----hcCCCCCeeeccCCcCccccCc-cc
Q 047549 149 EDISLPVNQ-LSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFL----MNCTNLITLNLRINNFRGDLSA-YN 222 (479)
Q Consensus 149 ~~L~l~~n~-l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~-~~ 222 (479)
++++++++. +++ .++.. .+.+...++.+.+++|.=. ..+.+ ..+..+.++++..+....+... ..
T Consensus 219 ~~lNlSwc~qi~~---~gv~~----~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 219 KYLNLSWCPQISG---NGVQA----LQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHhhhccCchhhc---CcchH----Hhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 777777763 332 11111 0234445555555554211 11111 2334445555444422101110 01
Q ss_pred cCCCCCCcEEEccCCcccc-cCCcc-CcCCCCCCEEEccCCc-ccccChhhh-hccCCCCEEEccCCCCCCCCCcccccc
Q 047549 223 FSTLHNLHTIDLGNNNFTG-SFPLT-LTSCMFLTAIRLSGNK-IEEQISPTI-LALVSVSYLSINNNNLSNITGAIGILM 298 (479)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~-~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~ 298 (479)
-..+..|+.++.+++...+ ..-.. -.++.+|+.+.+.+++ ++..-...+ .++..|+.+++..+...........-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 1234566666666553321 11111 2345667777766664 222222222 234566666666654433222223334
Q ss_pred CCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcce-ecCchhhcCCCCCCEEeCCCCc
Q 047549 299 GCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIK-GQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 299 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
+++.|+.+.++.+....... .........+...++.+.++++... +..-+.+..+++|+.+++-+++
T Consensus 370 ~C~~lr~lslshce~itD~g-i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEG-IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhh-hhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 55666666665544332210 0001111123445555555555443 1222334455555555555543
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.38 E-value=0.00068 Score=54.76 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=37.5
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 253 (479)
|.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +. .++...|..++.++.+.+.. .+.......+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 33444444444442 233333344444545555555443 32 33334455554555555543 2221223334445555
Q ss_pred CEEEccCCcccccChhhhhccCCCCEEEcc
Q 047549 254 TAIRLSGNKIEEQISPTILALVSVSYLSIN 283 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (479)
+.+++..+ +.......|.++ .++.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555443 333333344444 55555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=7.6e-05 Score=65.58 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=37.7
Q ss_pred ccccccCCCCCCeeecCCCcCCCc--CCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccc
Q 047549 68 IYPFTGKLTHLCHLNLSHNHLSFL--SPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLS 135 (479)
Q Consensus 68 ~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~ 135 (479)
+......+..|+.|++.+..++.+ .|.+++|++|.++.|.+...+.++....++++|+++++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 444444555666666666666544 34446666666666633222244444455566666666666654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.20 E-value=0.0018 Score=52.27 Aligned_cols=98 Identities=21% Similarity=0.355 Sum_probs=37.8
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 253 (479)
|..+++|+.+.+.++ +.......|..++.++.+.+.. .+. .++...|..+++++.+.+..+ +...-...+..+ +|
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 344445555555443 4333344455555566666644 222 333345555666666666543 332333445554 66
Q ss_pred CEEEccCCcccccChhhhhccCCC
Q 047549 254 TAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+.+.+.. .+..+....|.++++|
T Consensus 106 ~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 106 KEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -EEE-TT-B-SS----GGG-----
T ss_pred eEEEECC-CccEECCccccccccC
Confidence 6666654 3334444555555444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00056 Score=60.23 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=16.9
Q ss_pred cCCCCCeeeccCC--cCccccCccccCCCCCCcEEEccCCccc
Q 047549 200 NCTNLITLNLRIN--NFRGDLSAYNFSTLHNLHTIDLGNNNFT 240 (479)
Q Consensus 200 ~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (479)
.+++|++|.++.| ...+.++. ....+++|+++++++|+++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccc
Confidence 3445555555555 22222221 1223345555555555443
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.51 E-value=6e-05 Score=70.36 Aligned_cols=281 Identities=14% Similarity=0.086 Sum_probs=149.4
Q ss_pred CCcEEEcccccccc--CCCccCCCCCCCCEEECCCCc-ccccCCccccccCCCCCCCCCCCCEEEccCC-cCccccch-h
Q 047549 123 KLQTFRAGFSYLSG--SIPDDVSAAASLEDISLPVNQ-LSGAISNGVVNLTSLNIGKLANLKSLKLHTN-SLSGFLPQ-F 197 (479)
Q Consensus 123 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n-~l~~~~~~-~ 197 (479)
.|+.|.++++.-.+ .+-.....++++++|.+.++. ++...-..+ -..+++|+++++..| .++..... -
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl-------a~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL-------ARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH-------HHhcchhhhhhhcccchhHHHHHHHH
Confidence 57777787765432 122223467888888777764 221111111 134778888888774 55544333 2
Q ss_pred hhcCCCCCeeeccCCcCc-cccCccccCCCCCCcEEEccCCcccc--cCCccCcCCCCCCEEEccCCc-ccccChh-hhh
Q 047549 198 LMNCTNLITLNLRINNFR-GDLSAYNFSTLHNLHTIDLGNNNFTG--SFPLTLTSCMFLTAIRLSGNK-IEEQISP-TIL 272 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~ 272 (479)
...+++|++++++.+.-. +.--...+.+++.++.+...++.-.+ .+-..-+.+.-+..+++..+. ++..... .-.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 356788888888877532 21001133455556666555542111 011112334445566655542 3332211 123
Q ss_pred ccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceec--Cchh
Q 047549 273 ALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ--IPTW 350 (479)
Q Consensus 273 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~ 350 (479)
.+..|+.++.+++.-.+.......-.++++|+.+.+..+...+..... .-...++.|+.+++..+..... +...
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft----~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT----MLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh----hhhcCChhhhhhcccccceehhhhHhhh
Confidence 456778888777543221111123346788888888777532221111 0112456788888887765421 2222
Q ss_pred hcCCCCCCEEeCCCCcccccc-----CcccCCCCCCcEEEccCCcccc-cCCccccCCcccccccccccc
Q 047549 351 LGKLKKLQVLDLGSNQITGPI-----PGWLGNMPNLFYIDLSYNSISG-EFPKEFCGLPALALQEAKNRA 414 (479)
Q Consensus 351 l~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~l~~~~~~ 414 (479)
-.+++.|+.+.+++|...... ...-..+..|..+.+++++.+. ..-+....++.|+.+++....
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 346788888888887654221 2223446678888888876652 233445667777776665443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00011 Score=64.96 Aligned_cols=82 Identities=23% Similarity=0.240 Sum_probs=56.1
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccCh-hhhhccCCCC
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQIS-PTILALVSVS 278 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 278 (479)
.+.+.++|++.++.++ ++. ....++.|+.|.|+-|+|+.. ..+..|++|++|.|+.|.|..... ..+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3556778888888876 443 346778888888888888744 346778888888888887765321 2345666777
Q ss_pred EEEccCCC
Q 047549 279 YLSINNNN 286 (479)
Q Consensus 279 ~L~L~~n~ 286 (479)
.|.|..|.
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 77776664
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.00016 Score=64.05 Aligned_cols=80 Identities=29% Similarity=0.317 Sum_probs=50.7
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCcccccCCc-----cCc
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFTGSFPL-----TLT 248 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~ 248 (479)
.+|+.|++|.|+-|+|+.. ..+..|++|++|+|..|.|. ++.. ..+.++++|+.|+|..|.-.+..+. .+.
T Consensus 38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 4567777777777777632 34566777777777777765 3322 2456777777777777766554432 244
Q ss_pred CCCCCCEEE
Q 047549 249 SCMFLTAIR 257 (479)
Q Consensus 249 ~~~~L~~L~ 257 (479)
.+|+|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 566666665
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0039 Score=32.67 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=12.1
Q ss_pred CCcEEEccCCcccccCCccccC
Q 047549 380 NLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 380 ~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 45544544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.22 E-value=0.0033 Score=63.51 Aligned_cols=111 Identities=20% Similarity=0.149 Sum_probs=51.2
Q ss_pred CCCCCEEEccCC-cCccc-cchhhhcCCCCCeeeccCC-cCcccc---CccccCCCCCCcEEEccCCc-ccccCCccCc-
Q 047549 177 LANLKSLKLHTN-SLSGF-LPQFLMNCTNLITLNLRIN-NFRGDL---SAYNFSTLHNLHTIDLGNNN-FTGSFPLTLT- 248 (479)
Q Consensus 177 ~~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~- 248 (479)
++.|+.+.+.++ .++.. .......+++|+.|+++.+ ...... .......+++|+.++++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455666666555 22211 2233445666666666652 111000 01122344566666666655 3332222222
Q ss_pred CCCCCCEEEccCCc-ccccChh-hhhccCCCCEEEccCCCC
Q 047549 249 SCMFLTAIRLSGNK-IEEQISP-TILALVSVSYLSINNNNL 287 (479)
Q Consensus 249 ~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l 287 (479)
.+++|+.|.+.++. ++...-. ....++.|+.|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25666666655554 3332222 223456666666666544
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.10 E-value=0.002 Score=65.04 Aligned_cols=130 Identities=25% Similarity=0.232 Sum_probs=71.5
Q ss_pred cCCCCCCeeecCCCc-CCC--c---CCCCCCCCEEEcCCc-cc-ccCC-CCCCcCCCCCCCcEEEccccc-cccCCCccC
Q 047549 73 GKLTHLCHLNLSHNH-LSF--L---SPSVPFLSILDFSHN-YF-RGHC-QLPSGLGNFSKLQTFRAGFSY-LSGSIPDDV 142 (479)
Q Consensus 73 ~~l~~L~~L~L~~n~-l~~--~---~~~~~~L~~L~L~~n-~l-~~~~-~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~~ 142 (479)
..++.|+.|.+..+. +.. . ....+.|+.|+++++ .. .... ........+++|+.++++++. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888887663 332 1 122278888888873 11 1100 111233456788888888877 554333333
Q ss_pred C-CCCCCCEEECCCCc-ccccCCccccccCCCCCCCCCCCCEEEccCCcCc-cc-cchhhhcCCCCCeeec
Q 047549 143 S-AAASLEDISLPVNQ-LSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS-GF-LPQFLMNCTNLITLNL 209 (479)
Q Consensus 143 ~-~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~-~~-~~~~l~~l~~L~~L~l 209 (479)
. .+++|++|.+..+. ++.. ++..+ ...++.|++|+++++... .. +......+++++.+.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~---gl~~i----~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDE---GLVSI----AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchh---HHHHH----HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 3 27788888876665 3422 22221 345677888888877442 11 2222344666655443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.76 E-value=0.017 Score=30.23 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=8.4
Q ss_pred ccEEEeeCCcceecCchhh
Q 047549 333 LVVLGIGNCEIKGQIPTWL 351 (479)
Q Consensus 333 L~~L~l~~n~l~~~~~~~l 351 (479)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 344333
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.94 E-value=0.0008 Score=66.69 Aligned_cols=188 Identities=20% Similarity=0.163 Sum_probs=107.4
Q ss_pred CCeeeccCCcCcccc---CccccCCCCCCcEEEccCCcccccC----CccCcCC-CCCCEEEccCCcccccC----hhhh
Q 047549 204 LITLNLRINNFRGDL---SAYNFSTLHNLHTIDLGNNNFTGSF----PLTLTSC-MFLTAIRLSGNKIEEQI----SPTI 271 (479)
Q Consensus 204 L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~-~~L~~L~l~~n~l~~~~----~~~~ 271 (479)
+..+.+.+|.+...- -...+...+.|+.|++++|.+.+.- ...+... +.+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667778888775211 1124566778888888888876421 1223333 55677777777776542 3445
Q ss_pred hccCCCCEEEccCCCCCCCCC--cccc----ccCCCCCcEEEccCccccccCCCCccccccccccCC-ccEEEeeCCcce
Q 047549 272 LALVSVSYLSINNNNLSNITG--AIGI----LMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQN-LVVLGIGNCEIK 344 (479)
Q Consensus 272 ~~l~~L~~L~L~~n~l~~~~~--~~~~----l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~ 344 (479)
.....++.++++.|.+..... .... +....+++.|.+.++.++..........+ ...+. +..+++..|++.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l--~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVL--ASGESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHH--hccchhhHHHHHHhcCcc
Confidence 556778888888887752211 1112 22456677777777765532211111111 12223 555777777766
Q ss_pred ec----CchhhcCC-CCCCEEeCCCCccccc----cCcccCCCCCCcEEEccCCcccc
Q 047549 345 GQ----IPTWLGKL-KKLQVLDLGSNQITGP----IPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 345 ~~----~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
+. ....+..+ ..+++++++.|.+++. +...+..++.++++.+++|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 43 22334444 5667777777777643 23445556677777777777763
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.50 E-value=0.086 Score=25.50 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=4.5
Q ss_pred CCCEEEcCCcccc
Q 047549 97 FLSILDFSHNYFR 109 (479)
Q Consensus 97 ~L~~L~L~~n~l~ 109 (479)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.89 E-value=0.0029 Score=62.79 Aligned_cols=211 Identities=22% Similarity=0.197 Sum_probs=135.2
Q ss_pred CCEEEccCCcCccc----cchhhhcCCCCCeeeccCCcCccccC---ccccCCC-CCCcEEEccCCccccc----CCccC
Q 047549 180 LKSLKLHTNSLSGF----LPQFLMNCTNLITLNLRINNFRGDLS---AYNFSTL-HNLHTIDLGNNNFTGS----FPLTL 247 (479)
Q Consensus 180 L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~ 247 (479)
+..+.+.+|.+... +...+...+.|+.|+++.|.+.+.-. ...+... +.+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56677777776643 34455678899999999999872210 0122232 5677888888887643 44556
Q ss_pred cCCCCCCEEEccCCccccc----Chhhhh----ccCCCCEEEccCCCCCCCCCc--cccccCCCC-CcEEEccCcccccc
Q 047549 248 TSCMFLTAIRLSGNKIEEQ----ISPTIL----ALVSVSYLSINNNNLSNITGA--IGILMGCKN-LRMLLLCKIFFHEA 316 (479)
Q Consensus 248 ~~~~~L~~L~l~~n~l~~~----~~~~~~----~l~~L~~L~L~~n~l~~~~~~--~~~l~~~~~-L~~L~l~~n~~~~~ 316 (479)
...+.++.++++.|.+... .+..+. ...++++|.+.++.++..... ...+...+. ++.+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 6678899999999987421 233333 467899999999988743211 134455555 77799999987754
Q ss_pred CCCCcccccccccc-CCccEEEeeCCcceec----CchhhcCCCCCCEEeCCCCccccccC----cccCCCCCCcEEEcc
Q 047549 317 IPDENQITISSYAF-QNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSNQITGPIP----GWLGNMPNLFYIDLS 387 (479)
Q Consensus 317 ~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~ 387 (479)
......-.. ... +.++.++++.|.+++. +...+..++.++++.+++|.+.+.-. ........+..+-+.
T Consensus 249 g~~~L~~~l--~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~ 326 (478)
T KOG4308|consen 249 GVEKLLPCL--SVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLG 326 (478)
T ss_pred HHHHHHHHh--cccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcc
Confidence 111111000 122 5679999999999864 44566778899999999999875321 223334455666666
Q ss_pred CCccc
Q 047549 388 YNSIS 392 (479)
Q Consensus 388 ~N~l~ 392 (479)
+++..
T Consensus 327 ~~~~~ 331 (478)
T KOG4308|consen 327 GTGKG 331 (478)
T ss_pred ccCcc
Confidence 55443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.80 E-value=0.25 Score=26.85 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=11.8
Q ss_pred CCCcEEEccCCcccccCCccc
Q 047549 379 PNLFYIDLSYNSISGEFPKEF 399 (479)
Q Consensus 379 ~~L~~L~L~~N~l~~~~p~~~ 399 (479)
++|++|+|++|+++...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664333333
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.80 E-value=0.25 Score=26.85 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=11.8
Q ss_pred CCCcEEEccCCcccccCCccc
Q 047549 379 PNLFYIDLSYNSISGEFPKEF 399 (479)
Q Consensus 379 ~~L~~L~L~~N~l~~~~p~~~ 399 (479)
++|++|+|++|+++...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664333333
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.22 E-value=0.0099 Score=51.59 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=48.8
Q ss_pred ccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCC
Q 047549 72 TGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASL 148 (479)
Q Consensus 72 l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 148 (479)
+..+...+.||++.|++......+ ..+..|+++.|.+. .+|..++....++++++..|..+ ..|.++...+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~---~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK---FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh---hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 344445555555555544333222 34445555555555 56666666666667777666666 566666666777
Q ss_pred CEEECCCCccc
Q 047549 149 EDISLPVNQLS 159 (479)
Q Consensus 149 ~~L~l~~n~l~ 159 (479)
+++++..+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 76666666543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.43 E-value=0.013 Score=50.88 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=40.7
Q ss_pred ccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccc
Q 047549 329 AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
.+...+.||++.|++. .+-..|+.++.+..|+++.|++. ..|..+.+...+..+++..|..+ ..|.++...+.++.
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 3445555666655554 22333444555556666666555 45555555555555555555555 55555555555544
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.29 E-value=0.5 Score=25.63 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=11.4
Q ss_pred CCCCEEeCCCCccccccCc
Q 047549 355 KKLQVLDLGSNQITGPIPG 373 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~ 373 (479)
++|+.|+|++|++....+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777776643333
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.29 E-value=0.5 Score=25.63 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=11.4
Q ss_pred CCCCEEeCCCCccccccCc
Q 047549 355 KKLQVLDLGSNQITGPIPG 373 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~ 373 (479)
++|+.|+|++|++....+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777776643333
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.85 E-value=0.078 Score=45.21 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=48.1
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcC------CCcCCCCCCCCEEEcCCcc-cccCCCCCCcCCCCCCCc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHL------SFLSPSVPFLSILDFSHNY-FRGHCQLPSGLGNFSKLQ 125 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l------~~~~~~~~~L~~L~L~~n~-l~~~~~l~~~~~~l~~L~ 125 (479)
-|+.+|=+++.+.+.--+.+..++.++.|.+.++.- ..+....++|+.|++++|. |+. .--..+.++++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~--~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD--GGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech--hHHHHHHHhhhhH
Confidence 478888899888877777888888888888887742 2223334667777777663 332 1112344555555
Q ss_pred EEEccc
Q 047549 126 TFRAGF 131 (479)
Q Consensus 126 ~L~l~~ 131 (479)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.44 E-value=0.31 Score=25.86 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=8.2
Q ss_pred CCCCEEEccCCcccccC
Q 047549 251 MFLTAIRLSGNKIEEQI 267 (479)
Q Consensus 251 ~~L~~L~l~~n~l~~~~ 267 (479)
++|++|++++|.++...
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45566666666655433
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=83.25 E-value=5.4 Score=38.97 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=16.6
Q ss_pred ccEEEeeCCcceecCc---hhhcCCCCCCEEeCCCCccc
Q 047549 333 LVVLGIGNCEIKGQIP---TWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 333 L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~l~ 368 (479)
+..+.++.|.+....- ..+..-+.+.+|++++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 4445555554442211 12233455666666666554
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.28 E-value=0.3 Score=41.78 Aligned_cols=81 Identities=19% Similarity=0.120 Sum_probs=55.9
Q ss_pred CccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccccc-Cccc-CCCCCCcEEEccCC-cccccCCccccCCcccccc
Q 047549 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPI-PGWL-GNMPNLFYIDLSYN-SISGEFPKEFCGLPALALQ 408 (479)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~l 408 (479)
.++.+|.+++.+..+--+.+..++.++.|.+.+|.-.+.. -+.+ ...++|+.|+|++| +||..--.++..+++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4788888998888766677888888889988888643221 0111 13578999999977 4665445566777777776
Q ss_pred cccc
Q 047549 409 EAKN 412 (479)
Q Consensus 409 ~~~~ 412 (479)
.+++
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.81 E-value=1.4 Score=24.51 Aligned_cols=14 Identities=43% Similarity=0.392 Sum_probs=11.2
Q ss_pred cccCeeeCCCCCCC
Q 047549 466 MFLHVLDLSLNNFS 479 (479)
Q Consensus 466 ~~L~~L~ls~N~l~ 479 (479)
+.|+.|||++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888999998874
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.71 E-value=1.4 Score=24.01 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=11.2
Q ss_pred ccccCeeeCCCCCCC
Q 047549 465 VMFLHVLDLSLNNFS 479 (479)
Q Consensus 465 ~~~L~~L~ls~N~l~ 479 (479)
+.+|+.|+++.|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356888888888874
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.28 E-value=3 Score=22.68 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=8.6
Q ss_pred CCCEEEcCCcccc
Q 047549 97 FLSILDFSHNYFR 109 (479)
Q Consensus 97 ~L~~L~L~~n~l~ 109 (479)
+|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4666666777666
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.87 E-value=3 Score=41.52 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=17.5
Q ss_pred CCCCCEEEccCCcccccCh--hhhhccCCCCEEEccCC
Q 047549 250 CMFLTAIRLSGNKIEEQIS--PTILALVSVSYLSINNN 285 (479)
Q Consensus 250 ~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n 285 (479)
.+.+..+.+++|++..... ..-...++|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3455666666666544311 11122355556666655
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.83 E-value=32 Score=33.91 Aligned_cols=258 Identities=15% Similarity=0.054 Sum_probs=118.3
Q ss_pred CCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcC
Q 047549 122 SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNC 201 (479)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 201 (479)
+.++.++++.|.+....|-.+..-..= +.+..++.+...... +.. =..-..+.+++++.|.....+|..+..+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~---l~~--qsg~~~lteldls~n~~Kddip~~~n~~ 237 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISK---LLI--QSGRLWLTELDLSTNGGKDDIPRTLNKK 237 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHH---hhh--hhccccccccccccCCCCccchhHHHHh
Confidence 445666666666655555444321110 444444433211110 000 0111346677777777666666554322
Q ss_pred ---CCCCeeeccCCcCccc--cCccccCCCCCCcEEEccCCcccc----cCC----ccCcCCCCCCEEEccCCcccccCh
Q 047549 202 ---TNLITLNLRINNFRGD--LSAYNFSTLHNLHTIDLGNNNFTG----SFP----LTLTSCMFLTAIRLSGNKIEEQIS 268 (479)
Q Consensus 202 ---~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~----~~~----~~~~~~~~L~~L~l~~n~l~~~~~ 268 (479)
.-++.++.+...+.-+ +.....+..++++..+++.|.... +.+ +.++.-+++ .|++..++....-+
T Consensus 238 a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~l 316 (553)
T KOG4242|consen 238 AGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKL 316 (553)
T ss_pred hhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhh
Confidence 2344555554443311 111223344566666666665431 111 222333445 55665554322211
Q ss_pred hhh-hc-----cCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCc
Q 047549 269 PTI-LA-----LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCE 342 (479)
Q Consensus 269 ~~~-~~-----l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 342 (479)
..+ .. -+.=-++|+..|....... ..+...-..++++.+..|.+.++....... ..-++.+.+.+++-.
T Consensus 317 ks~LLgla~ne~t~g~rldl~~cp~~~a~v-leaci~g~R~q~l~~rdnnldgeg~~vgk~----~~s~s~r~l~agrs~ 391 (553)
T KOG4242|consen 317 KSMLLGLAENEATLGARLDLRRCPLERAEV-LEACIFGQRVQVLLQRDNNLDGEGGAVGKR----KQSKSGRILKAGRSG 391 (553)
T ss_pred hhhhcccccccccccccCChhhccccccch-hhccccceeeeEeeccccccccccccccce----eeccccccccccccC
Confidence 111 00 0111245555544433221 122222334778888888777765544332 133456666665433
Q ss_pred ceec-Cch------hh--cCCCCCCEEeCCCCccccccCc---ccCCCCCCcEEEccCCccc
Q 047549 343 IKGQ-IPT------WL--GKLKKLQVLDLGSNQITGPIPG---WLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 343 l~~~-~~~------~l--~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~ 392 (479)
-... .+. .. ..---+..+.++.|........ ....-+.+..|++++|...
T Consensus 392 ~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 392 DKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred CceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 2100 000 00 1122366777777777643322 2344567888999988765
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.21 E-value=13 Score=37.15 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=7.0
Q ss_pred CCCEEEccCCcCc
Q 047549 179 NLKSLKLHTNSLS 191 (479)
Q Consensus 179 ~L~~L~L~~n~l~ 191 (479)
.|++|-+.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 3555555555554
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.03 E-value=32 Score=18.39 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=5.0
Q ss_pred CCCCEEeCCCC
Q 047549 355 KKLQVLDLGSN 365 (479)
Q Consensus 355 ~~L~~L~Ls~n 365 (479)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.34 E-value=52 Score=40.06 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=24.8
Q ss_pred EeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 337 GIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 337 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788888666677788888888888888775
Done!