Query 047549
Match_columns 479
No_of_seqs 306 out of 4375
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.9E-55 3.4E-59 460.0 34.7 466 5-479 2-551 (768)
2 4eco_A Uncharacterized protein 100.0 1E-50 3.5E-55 419.9 27.8 449 9-479 24-600 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2.1E-48 7.1E-53 409.4 31.3 445 8-479 262-840 (876)
4 3rgz_A Protein brassinosteroid 100.0 4.3E-48 1.5E-52 409.2 33.3 331 53-401 224-560 (768)
5 3t6q_A CD180 antigen; protein- 100.0 2.8E-44 9.5E-49 371.6 39.3 408 52-479 33-536 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-42 5.6E-47 363.1 40.4 177 298-479 402-597 (680)
7 3t6q_A CD180 antigen; protein- 100.0 1.6E-43 5.3E-48 366.0 31.9 418 51-479 56-560 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-42 3.7E-47 359.7 30.9 405 51-478 31-557 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-42 4E-47 355.3 26.2 415 40-479 3-510 (549)
10 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-41 1.1E-45 353.4 36.4 417 52-479 49-622 (680)
11 3vq2_A TLR4, TOLL-like recepto 100.0 7.5E-41 2.6E-45 345.9 34.3 392 50-459 54-562 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-41 6.5E-46 362.1 29.6 412 41-479 14-539 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 4.4E-41 1.5E-45 345.2 29.2 410 51-479 27-531 (570)
14 3v47_A TOLL-like receptor 5B a 100.0 1.6E-39 5.5E-44 324.2 30.6 350 76-479 30-408 (455)
15 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-39 5.2E-44 347.4 31.4 420 51-479 47-560 (844)
16 4eco_A Uncharacterized protein 100.0 6.2E-40 2.1E-44 339.3 25.6 384 76-479 81-579 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-40 8.7E-45 335.6 18.5 398 52-479 21-481 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 1.1E-39 3.7E-44 343.3 23.4 377 86-478 435-863 (876)
19 2z63_A TOLL-like receptor 4, v 100.0 4.7E-38 1.6E-42 322.7 28.7 401 57-479 12-507 (570)
20 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-38 1.5E-42 321.3 25.7 402 47-479 3-486 (549)
21 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-38 3.9E-43 301.2 19.6 265 11-288 2-281 (313)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.6E-37 2.9E-41 312.3 28.0 392 54-479 33-510 (562)
23 3v47_A TOLL-like receptor 5B a 100.0 1.4E-36 4.9E-41 302.8 28.8 351 80-479 14-384 (455)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-37 3.7E-42 316.3 20.6 400 55-479 3-457 (520)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-35 3.9E-40 308.8 34.8 394 52-479 52-580 (635)
26 2id5_A Lingo-1, leucine rich r 100.0 1.3E-35 4.3E-40 297.7 30.4 286 79-407 14-300 (477)
27 1o6v_A Internalin A; bacterial 100.0 1.8E-35 6.3E-40 295.3 29.2 344 52-444 46-391 (466)
28 1jl5_A Outer protein YOPM; leu 100.0 3.8E-35 1.3E-39 290.6 26.8 360 52-479 11-409 (454)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.9E-35 2E-39 298.6 27.6 338 51-414 51-508 (562)
30 2id5_A Lingo-1, leucine rich r 100.0 1.7E-34 5.7E-39 289.6 27.6 314 57-392 16-333 (477)
31 3o6n_A APL1; leucine-rich repe 100.0 9.2E-35 3.1E-39 283.7 23.7 323 32-392 4-331 (390)
32 3bz5_A Internalin-J, INLJ; leu 100.0 4.6E-34 1.6E-38 283.1 28.0 342 51-464 41-396 (457)
33 1o6v_A Internalin A; bacterial 100.0 3.3E-33 1.1E-37 279.0 29.8 319 51-415 67-387 (466)
34 4fmz_A Internalin; leucine ric 100.0 4.9E-33 1.7E-37 267.1 28.9 285 118-479 62-346 (347)
35 4fmz_A Internalin; leucine ric 100.0 1.5E-32 5.3E-37 263.7 28.7 302 51-392 43-346 (347)
36 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-32 6.4E-37 271.6 30.0 343 66-479 32-387 (457)
37 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-32 4.2E-37 286.0 29.7 395 63-479 42-555 (635)
38 1jl5_A Outer protein YOPM; leu 100.0 7.1E-33 2.4E-37 274.4 25.6 300 53-417 72-371 (454)
39 3oja_B Anopheles plasmodium-re 100.0 1.1E-32 3.8E-37 283.4 28.1 326 32-394 10-360 (597)
40 3oja_B Anopheles plasmodium-re 100.0 2.4E-32 8.3E-37 280.9 24.6 275 75-407 50-328 (597)
41 3o6n_A APL1; leucine-rich repe 100.0 9.3E-32 3.2E-36 262.4 25.6 307 96-479 45-352 (390)
42 1xku_A Decorin; proteoglycan, 100.0 8.3E-31 2.8E-35 249.7 28.9 295 123-477 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 3E-31 1E-35 252.9 25.6 294 123-477 34-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 3.8E-30 1.3E-34 245.1 30.1 286 78-412 33-328 (330)
45 4fcg_A Uncharacterized protein 100.0 5.9E-32 2E-36 256.7 15.7 266 8-288 20-314 (328)
46 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-30 8.3E-35 246.7 26.5 287 77-413 34-330 (332)
47 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-31 1.1E-35 250.3 19.5 247 179-477 51-302 (313)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-33 9E-38 279.7 -3.3 355 52-413 3-408 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 5.9E-33 2E-37 277.2 -6.1 316 76-397 3-359 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4.1E-33 237.0 20.0 282 74-395 29-317 (353)
51 3g06_A SSPH2 (leucine-rich rep 100.0 1.9E-28 6.6E-33 249.8 21.0 288 32-402 13-307 (622)
52 2z80_A TOLL-like receptor 2, v 100.0 4E-28 1.4E-32 233.3 17.1 288 32-371 21-317 (353)
53 2z66_A Variable lymphocyte rec 100.0 3.1E-28 1E-32 229.4 14.2 286 41-355 7-298 (306)
54 3zyj_A Leucine-rich repeat-con 100.0 2E-26 6.8E-31 228.2 26.3 246 125-392 46-292 (440)
55 2z66_A Variable lymphocyte rec 100.0 1.6E-27 5.4E-32 224.5 16.7 197 79-288 10-212 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 2E-26 7E-31 228.9 25.4 247 98-392 56-303 (452)
57 1ozn_A Reticulon 4 receptor; N 99.9 5.8E-27 2E-31 218.3 19.1 223 55-313 14-237 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 5.2E-26 1.8E-30 226.0 27.0 246 78-343 56-302 (452)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-26 7.9E-31 214.2 19.9 216 176-401 54-270 (285)
60 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-25 6.2E-30 228.0 27.4 255 76-414 40-295 (622)
61 4fcg_A Uncharacterized protein 99.9 3E-26 1E-30 217.4 19.5 235 121-392 80-314 (328)
62 3zyj_A Leucine-rich repeat-con 99.9 1.7E-25 6E-30 221.4 25.4 241 56-314 47-292 (440)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-27 8.1E-32 224.2 9.4 257 98-411 12-270 (317)
64 1wwl_A Monocyte differentiatio 99.9 2.2E-27 7.6E-32 223.9 7.7 250 176-479 41-309 (312)
65 2o6q_A Variable lymphocyte rec 99.9 4.8E-25 1.7E-29 203.4 21.4 218 37-288 1-218 (270)
66 3ogk_B Coronatine-insensitive 99.9 7.7E-29 2.6E-33 255.3 -6.7 401 51-479 72-526 (592)
67 1wwl_A Monocyte differentiatio 99.9 2.2E-27 7.5E-32 223.9 2.5 248 96-393 43-310 (312)
68 3oja_A Leucine-rich immune mol 99.9 1.3E-25 4.4E-30 224.5 13.6 237 120-411 32-270 (487)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-25 7.3E-30 210.8 14.1 241 175-476 31-272 (317)
70 3ogk_B Coronatine-insensitive 99.9 9.8E-28 3.4E-32 247.1 -4.1 408 40-479 41-501 (592)
71 3oja_A Leucine-rich immune mol 99.9 2.7E-24 9.3E-29 214.9 15.6 238 176-474 32-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 7E-23 2.4E-27 189.7 22.4 143 123-274 29-172 (276)
73 2z62_A TOLL-like receptor 4, v 99.9 6.6E-23 2.3E-27 189.8 19.9 201 76-288 28-237 (276)
74 1p9a_G Platelet glycoprotein I 99.9 8.2E-23 2.8E-27 190.1 20.2 169 199-406 7-175 (290)
75 2o6q_A Variable lymphocyte rec 99.9 5.2E-22 1.8E-26 183.1 23.7 203 97-315 17-219 (270)
76 2p1m_B Transport inhibitor res 99.9 6.4E-26 2.2E-30 233.6 -4.9 345 51-413 65-466 (594)
77 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.7E-27 187.8 17.2 211 177-407 40-250 (272)
78 3rfs_A Internalin B, repeat mo 99.9 4.8E-23 1.7E-27 190.2 13.3 177 96-287 41-217 (272)
79 1p9a_G Platelet glycoprotein I 99.9 6.9E-22 2.3E-26 183.9 20.4 200 72-286 6-206 (290)
80 2ca6_A RAN GTPase-activating p 99.9 3.3E-24 1.1E-28 208.6 1.0 255 113-395 23-319 (386)
81 3goz_A Leucine-rich repeat-con 99.9 3.1E-23 1E-27 199.8 7.1 232 150-392 2-266 (362)
82 2ast_B S-phase kinase-associat 99.9 5.4E-24 1.9E-28 203.1 1.8 269 38-353 34-315 (336)
83 4glp_A Monocyte differentiatio 99.9 9.8E-23 3.3E-27 191.9 9.4 230 123-393 65-308 (310)
84 4glp_A Monocyte differentiatio 99.9 4.6E-22 1.6E-26 187.3 12.8 228 178-479 64-307 (310)
85 2p1m_B Transport inhibitor res 99.9 2.4E-24 8.2E-29 221.9 -4.1 344 51-414 104-492 (594)
86 2ca6_A RAN GTPase-activating p 99.9 2.3E-23 8E-28 202.6 2.8 227 174-406 28-306 (386)
87 3goz_A Leucine-rich repeat-con 99.9 4.7E-23 1.6E-27 198.5 4.7 261 101-397 3-302 (362)
88 2xwt_C Thyrotropin receptor; s 99.9 1.4E-21 4.6E-26 176.9 14.1 195 77-310 32-235 (239)
89 3m19_A Variable lymphocyte rec 99.9 2.5E-20 8.6E-25 169.8 20.5 193 38-266 2-194 (251)
90 3m19_A Variable lymphocyte rec 99.9 2.1E-20 7.1E-25 170.4 19.8 177 98-288 16-192 (251)
91 2ast_B S-phase kinase-associat 99.9 1.6E-22 5.6E-27 192.8 5.5 255 97-401 48-315 (336)
92 1h6u_A Internalin H; cell adhe 99.9 1.6E-20 5.6E-25 176.3 18.3 192 144-392 39-230 (308)
93 2xwt_C Thyrotropin receptor; s 99.8 6.3E-21 2.2E-25 172.5 14.1 183 179-397 32-223 (239)
94 1h6u_A Internalin H; cell adhe 99.8 3.2E-20 1.1E-24 174.3 18.2 170 96-290 41-210 (308)
95 3cvr_A Invasion plasmid antige 99.8 1.7E-20 5.8E-25 189.0 14.6 207 33-275 35-254 (571)
96 4ay9_X Follicle-stimulating ho 99.8 4.3E-20 1.5E-24 176.8 16.4 183 97-292 31-219 (350)
97 4ay9_X Follicle-stimulating ho 99.8 6.2E-20 2.1E-24 175.7 16.5 201 178-410 30-233 (350)
98 2o6s_A Variable lymphocyte rec 99.8 8E-19 2.8E-23 155.0 15.5 182 41-274 7-188 (208)
99 2o6s_A Variable lymphocyte rec 99.8 7.8E-19 2.7E-23 155.1 14.9 148 126-285 11-158 (208)
100 3cvr_A Invasion plasmid antige 99.8 5.8E-19 2E-23 177.9 15.3 134 147-314 60-193 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 8.2E-18 2.8E-22 149.7 15.2 143 254-406 14-156 (220)
102 3e6j_A Variable lymphocyte rec 99.8 2.9E-17 1E-21 147.1 18.7 163 32-240 10-172 (229)
103 1h6t_A Internalin B; cell adhe 99.8 6.5E-18 2.2E-22 157.1 14.6 171 200-393 44-214 (291)
104 1h6t_A Internalin B; cell adhe 99.8 7E-18 2.4E-22 156.9 14.3 168 96-288 46-213 (291)
105 2v9t_B SLIT homolog 2 protein 99.7 2.4E-17 8E-22 146.7 16.2 111 176-287 54-164 (220)
106 2xot_A Amphoterin-induced prot 99.7 9.5E-18 3.2E-22 161.2 14.5 156 98-264 41-202 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-17 8.5E-22 146.5 15.9 152 99-264 14-166 (220)
108 2xot_A Amphoterin-induced prot 99.7 2E-17 6.8E-22 158.9 16.3 176 99-288 21-202 (361)
109 1m9s_A Internalin B; cell inva 99.7 1.9E-17 6.5E-22 168.7 16.7 171 176-393 41-211 (605)
110 2v9t_B SLIT homolog 2 protein 99.7 4.5E-17 1.5E-21 144.9 16.9 134 123-265 33-166 (220)
111 1m9s_A Internalin B; cell inva 99.7 1.9E-17 6.5E-22 168.6 14.6 151 118-289 61-211 (605)
112 3e6j_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 142.4 17.5 154 97-265 20-173 (229)
113 4ezg_A Putative uncharacterize 99.7 6.1E-17 2.1E-21 141.5 13.2 149 96-263 44-193 (197)
114 1xeu_A Internalin C; cellular 99.7 2.1E-17 7.2E-22 151.2 8.7 150 224-394 38-187 (263)
115 4ezg_A Putative uncharacterize 99.7 2.4E-16 8.2E-21 137.7 14.4 130 175-313 41-171 (197)
116 1xeu_A Internalin C; cellular 99.7 7E-17 2.4E-21 147.7 9.1 168 75-266 18-187 (263)
117 4b8c_D Glucose-repressible alc 99.7 5.2E-18 1.8E-22 177.1 -0.2 253 12-287 129-403 (727)
118 1dce_A Protein (RAB geranylger 99.6 2.4E-18 8.3E-23 174.2 -4.7 122 302-473 442-567 (567)
119 1dce_A Protein (RAB geranylger 99.6 1.3E-18 4.5E-23 176.1 -7.2 125 203-337 442-566 (567)
120 3sb4_A Hypothetical leucine ri 99.6 1.3E-15 4.4E-20 144.4 10.9 287 121-473 24-328 (329)
121 1w8a_A SLIT protein; signaling 99.6 6.4E-15 2.2E-19 128.0 13.7 91 118-216 50-140 (192)
122 1w8a_A SLIT protein; signaling 99.6 9.2E-15 3.2E-19 126.9 14.2 131 125-266 11-141 (192)
123 3sb4_A Hypothetical leucine ri 99.6 7.5E-15 2.6E-19 139.1 14.4 79 329-409 248-327 (329)
124 2ell_A Acidic leucine-rich nuc 99.6 3.4E-15 1.2E-19 126.8 10.6 136 251-397 24-164 (168)
125 4b8c_D Glucose-repressible alc 99.6 5.8E-16 2E-20 161.7 6.2 123 268-402 217-339 (727)
126 2ell_A Acidic leucine-rich nuc 99.6 8E-15 2.7E-19 124.5 11.3 131 122-263 24-159 (168)
127 2wfh_A SLIT homolog 2 protein 99.6 2.1E-14 7.3E-19 124.6 14.2 125 80-215 14-139 (193)
128 4fdw_A Leucine rich hypothetic 99.6 4.8E-13 1.6E-17 129.5 22.9 215 179-410 158-377 (401)
129 2wfh_A SLIT homolog 2 protein 99.6 5.4E-14 1.8E-18 122.1 14.2 127 99-264 13-139 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 1.5E-14 5.3E-19 120.1 10.1 126 122-258 17-147 (149)
131 4fdw_A Leucine rich hypothetic 99.5 4.7E-13 1.6E-17 129.6 21.9 217 174-411 132-353 (401)
132 2je0_A Acidic leucine-rich nuc 99.5 7.9E-15 2.7E-19 121.8 8.1 123 275-408 17-145 (149)
133 2o6r_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 120.3 13.2 120 277-407 9-128 (177)
134 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 118.0 14.6 41 119-159 49-89 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.5 9.7E-14 3.3E-18 118.7 9.1 109 271-392 15-126 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-13 6.4E-18 116.9 9.8 132 118-263 15-152 (176)
137 4fs7_A Uncharacterized protein 99.4 1.8E-11 6E-16 118.9 22.4 308 69-413 64-376 (394)
138 3g39_A Variable lymphocyte rec 99.4 6.2E-13 2.1E-17 112.8 9.9 97 302-407 10-106 (170)
139 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 111.3 10.0 95 304-407 15-109 (174)
140 4fs7_A Uncharacterized protein 99.4 1.1E-10 3.9E-15 113.2 24.5 319 52-408 71-393 (394)
141 1ds9_A Outer arm dynein; leuci 99.4 5.7E-15 1.9E-19 129.0 -5.6 127 270-409 43-180 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 7.4E-15 2.5E-19 128.3 -5.9 156 198-392 14-185 (198)
143 3g39_A Variable lymphocyte rec 99.3 9.5E-12 3.3E-16 105.4 12.3 38 122-159 30-67 (170)
144 2r9u_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 104.1 12.4 38 122-159 33-70 (174)
145 3un9_A NLR family member X1; l 99.2 7.3E-13 2.5E-17 127.0 -3.4 63 330-392 210-283 (372)
146 3un9_A NLR family member X1; l 99.2 1.8E-12 6.1E-17 124.3 -1.5 64 225-288 181-252 (372)
147 2ifg_A High affinity nerve gro 99.2 7.8E-11 2.7E-15 112.3 9.7 74 329-402 29-103 (347)
148 4gt6_A Cell surface protein; l 99.2 1.8E-08 6.3E-13 97.5 26.5 127 330-478 264-390 (394)
149 4gt6_A Cell surface protein; l 99.1 2.5E-08 8.5E-13 96.6 24.6 269 117-412 82-366 (394)
150 2ifg_A High affinity nerve gro 99.0 1E-09 3.6E-14 104.4 10.7 77 80-160 12-94 (347)
151 4h09_A Hypothetical leucine ri 99.0 2.5E-07 8.5E-12 89.0 25.5 167 225-405 192-358 (379)
152 2ra8_A Uncharacterized protein 98.8 4E-09 1.4E-13 100.2 6.2 144 223-394 168-322 (362)
153 4h09_A Hypothetical leucine ri 98.8 2.6E-06 8.8E-11 81.9 25.2 267 117-412 64-342 (379)
154 2ra8_A Uncharacterized protein 98.7 4.7E-09 1.6E-13 99.6 4.5 63 353-415 250-319 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 4E-08 1.4E-12 84.1 0.3 62 331-392 93-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.1E-12 79.6 3.7 61 227-287 93-163 (185)
157 3rw6_A Nuclear RNA export fact 98.1 2.4E-06 8.3E-11 76.8 4.2 80 329-409 168-257 (267)
158 3rw6_A Nuclear RNA export fact 98.0 8.4E-06 2.9E-10 73.3 6.4 30 252-281 221-257 (267)
159 3e4g_A ATP synthase subunit S, 97.7 1.2E-05 4.2E-10 67.0 2.6 33 180-212 116-149 (176)
160 3e4g_A ATP synthase subunit S, 97.6 1.7E-05 5.8E-10 66.1 2.4 13 299-311 137-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 4.4E-05 1.5E-09 64.9 -0.3 92 118-213 66-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00013 4.6E-09 61.9 2.0 62 331-392 98-170 (197)
163 3rfe_A Platelet glycoprotein I 96.3 0.0077 2.6E-07 47.5 6.6 52 80-134 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0052 1.8E-07 48.5 5.3 56 335-392 12-68 (130)
165 2lz0_A Uncharacterized protein 44.7 60 0.0021 23.4 6.1 13 118-130 16-28 (100)
166 2lz0_A Uncharacterized protein 40.6 73 0.0025 23.0 6.1 38 196-235 14-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.9e-55 Score=460.01 Aligned_cols=466 Identities=25% Similarity=0.344 Sum_probs=345.2
Q ss_pred ccccccccChhhHHHHHHhHhcCCCCC--CCCCCCCCCccceeEEeCCCCCEEEEECCCCCcccc---ccc---------
Q 047549 5 FASLDQACNQIDQETLLSLNFNASNPP--LNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGS---IYP--------- 70 (479)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~w~~~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~---~~~--------- 70 (479)
+++++++..++|++||++||+++.++. ..|..++|||.|.||+|+ .++|+.|+|+++.+.|. +++
T Consensus 2 ~~~~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 2 FQASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ------CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CcCccccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 355666678889999999999998663 789888999999999998 78999999999998886 554
Q ss_pred --------------cccCCCCCCeeecCCCcCCCcCCC------CCCCCEEEcCCcccccCCCCCCcC-CCCCCCcEEEc
Q 047549 71 --------------FTGKLTHLCHLNLSHNHLSFLSPS------VPFLSILDFSHNYFRGHCQLPSGL-GNFSKLQTFRA 129 (479)
Q Consensus 71 --------------~l~~l~~L~~L~L~~n~l~~~~~~------~~~L~~L~L~~n~l~~~~~l~~~~-~~l~~L~~L~l 129 (479)
.++.+++|++|+|++|.+.+..+. .++|++|++++|.+.+ .+|..+ .++++|++|++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--PGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC--CSSCCSCCCCTTCSEEEC
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC--cCCHHHhccCCCCCEEEC
Confidence 556667777777777766654332 2667777777777664 444443 56777777777
Q ss_pred cccccccCCCcc---CCCCCCCCEEECCCCcccccCCc-cccccCCC------------CCCCCCCCCEEEccCCcCccc
Q 047549 130 GFSYLSGSIPDD---VSAAASLEDISLPVNQLSGAISN-GVVNLTSL------------NIGKLANLKSLKLHTNSLSGF 193 (479)
Q Consensus 130 ~~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l------------~~~~~~~L~~L~L~~n~l~~~ 193 (479)
++|.+++..+.. +.++++|++|++++|.+.+..+. .+.+++.+ .+..+++|++|++++|.+++.
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc
Confidence 777776655554 55666666666666666544332 11111111 256678888888888888888
Q ss_pred cchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCC-CCCCEEEccCCcccccChhhhh
Q 047549 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSC-MFLTAIRLSGNKIEEQISPTIL 272 (479)
Q Consensus 194 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~ 272 (479)
.|..+..+++|++|++++|.+.+.++.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++..|..+.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 8888888888888888888887665542 67788888888888877777777664 7888888888888877888888
Q ss_pred ccCCCCEEEccCCCCC-CCCCccccccCCCCCcEEEccCccccccCCCCcccc---------------------cccccc
Q 047549 273 ALVSVSYLSINNNNLS-NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT---------------------ISSYAF 330 (479)
Q Consensus 273 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~---------------------~~~~~~ 330 (479)
.+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+.+|...... +....+
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~--~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPM--DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCH--HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred cCCCccEEECCCCcccCcCCH--HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 8888888888888776 3332 235667777777777777776665543210 000115
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEA 410 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~ 410 (479)
++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+..+++|+.+++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 67888888888888888888888999999999999998888888888999999999999998888988999999999988
Q ss_pred ccccCCCCcccCcccccccccccccccccccC-CCC---------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 411 KNRADGNQLQLPLFVPETKCALYNQQYNKLFS-LPP---------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~-~~~---------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
++|...+..+ ..+...++|+.+++++|+++. +|. .|++++|+++|.+|..+.++++|+.|++++|+++
T Consensus 474 ~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 474 DFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CSSCCCSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCcccCcCC-HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 8776553332 335567888899999998874 342 5899999999999999999999999999999763
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-50 Score=419.93 Aligned_cols=449 Identities=18% Similarity=0.215 Sum_probs=333.8
Q ss_pred ccccChhhHHHHHHhHhcCCCCC-----------CCCCCCCCCccc---eeEEeCCCCCEEEEECCCCCccccccccccC
Q 047549 9 DQACNQIDQETLLSLNFNASNPP-----------LNWSFSTDCCLW---EGIKCDSEAQVTHLWLPDRGLRGSIYPFTGK 74 (479)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~-----------~~w~~~~~~c~w---~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~ 74 (479)
..|....|+.||.+++.++.++. .+|..+.++|.| .||+|+..++|+.|+|+++++.|.+|+++++
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGG
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhc
Confidence 34455678999999999976553 379989999999 9999998899999999999999999999999
Q ss_pred CCCCCeeecCCCcCC------Cc---------------------------CC-----------------------CCCCC
Q 047549 75 LTHLCHLNLSHNHLS------FL---------------------------SP-----------------------SVPFL 98 (479)
Q Consensus 75 l~~L~~L~L~~n~l~------~~---------------------------~~-----------------------~~~~L 98 (479)
+++|++|+|++|.+. +. ++ ....+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 999999999999651 10 00 00112
Q ss_pred CEEEcC--CcccccCCCCCCcCCCCCCCcEEEccccccccC-----------------CCccCC--CCCCCCEEECCCCc
Q 047549 99 SILDFS--HNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGS-----------------IPDDVS--AAASLEDISLPVNQ 157 (479)
Q Consensus 99 ~~L~L~--~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~ 157 (479)
+.+.+. +|.++ .+|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.
T Consensus 184 ~~l~l~~~~n~l~---~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 184 KDTQIGQLSNNIT---FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CTTTTTCCSCEEE---EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred hhhhhccccCCCc---cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 222221 45666 3788888888888888888888864 888888 88888888888888
Q ss_pred ccccCCccccccCCCCCCCCCCCCEEEccCCc-Ccc-ccchhhhcC------CCCCeeeccCCcCccccCc-cccCCCCC
Q 047549 158 LSGAISNGVVNLTSLNIGKLANLKSLKLHTNS-LSG-FLPQFLMNC------TNLITLNLRINNFRGDLSA-YNFSTLHN 228 (479)
Q Consensus 158 l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~-~~~~~l~~ 228 (479)
+.+.+|.. +.++++|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. ..+..+++
T Consensus 261 l~~~~p~~--------l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~ 331 (636)
T 4eco_A 261 NLTKLPTF--------LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK 331 (636)
T ss_dssp TCSSCCTT--------TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred CCccChHH--------HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence 88877765 4567888888888887 887 678777765 88888888888887 6664 25778888
Q ss_pred CcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCC-CCEEEccCCCCCCCCCccccccCCCCCcEEE
Q 047549 229 LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVS-VSYLSINNNNLSNITGAIGILMGCKNLRMLL 307 (479)
Q Consensus 229 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~ 307 (479)
|++|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++.+|..+ ....+++|+.|+
T Consensus 332 L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~-~~~~l~~L~~L~ 408 (636)
T 4eco_A 332 LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIF-DAKSVSVMSAID 408 (636)
T ss_dssp CCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCC-CTTCSSCEEEEE
T ss_pred CCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhh-hhcccCccCEEE
Confidence 8888888888887888 7888888888888888887 46677888888 888888888888666422 112244788888
Q ss_pred ccCccccccCCCCcc-ccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCc-ccCCC-------
Q 047549 308 LCKIFFHEAIPDENQ-ITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPG-WLGNM------- 378 (479)
Q Consensus 308 l~~n~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l------- 378 (479)
+++|.+.+..|..+. .......+++|++|++++|+++...+..+..+++|++|++++|++. .+|. .+...
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNT 487 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTG
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccccc
Confidence 888888877665443 1111113457888888888888444445566888888888888888 4443 33322
Q ss_pred CCCcEEEccCCcccccCCcccc--CCccccccccccccCCCCcccCccccccccccccccc------ccccC-CC-----
Q 047549 379 PNLFYIDLSYNSISGEFPKEFC--GLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQY------NKLFS-LP----- 444 (479)
Q Consensus 379 ~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------n~l~~-~~----- 444 (479)
++|++|++++|+++ .+|..+. .++.|+.+++++|..... + ..+....+|+.+++++ |++.. +|
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p-~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKF-P-TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSC-C-CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCc-C-hhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 27888888888888 6777776 888888888877665542 1 2344567778888744 44432 23
Q ss_pred ----CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 ----PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ----~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|++ +.+|..+. ++|+.||+++|+++
T Consensus 565 l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 2689999999 48888766 78999999999864
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-48 Score=409.40 Aligned_cols=445 Identities=19% Similarity=0.216 Sum_probs=339.9
Q ss_pred cccccChhhHHHHHHhHhcCCCCCCCCCCCC-----CC--ccc------------eeEEeCCCCCEEEEECCCCCccccc
Q 047549 8 LDQACNQIDQETLLSLNFNASNPPLNWSFST-----DC--CLW------------EGIKCDSEAQVTHLWLPDRGLRGSI 68 (479)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~w~~~~-----~~--c~w------------~~v~c~~~~~l~~L~l~~~~l~~~~ 68 (479)
.++|...+|+.||++||.++.++ +|..+. ++ |.| .||.|+..++|+.|+|+++++.|.+
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred cccccchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 34456678999999999999765 887543 55 999 9999998899999999999999999
Q ss_pred cccccCCCCCCeeec-CCCcCCCcCCC-----------------------------------------------------
Q 047549 69 YPFTGKLTHLCHLNL-SHNHLSFLSPS----------------------------------------------------- 94 (479)
Q Consensus 69 ~~~l~~l~~L~~L~L-~~n~l~~~~~~----------------------------------------------------- 94 (479)
|++++++++|++|+| ++|.+.+..+.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 88866544110
Q ss_pred --CCCCCEEEcCC--cccccCCCCCCcCCCCCCCcEEEcccccccc-----------------CCCccCC--CCCCCCEE
Q 047549 95 --VPFLSILDFSH--NYFRGHCQLPSGLGNFSKLQTFRAGFSYLSG-----------------SIPDDVS--AAASLEDI 151 (479)
Q Consensus 95 --~~~L~~L~L~~--n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L 151 (479)
...++.+.+.. |.++ .+|..++++++|++|++++|.+++ .+|..++ ++++|++|
T Consensus 420 ~~~l~l~~l~l~~~~N~L~---~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRIT---FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEE---EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccccchhhceeccccCccc---chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 01223333332 5666 378888899999999999999887 3888877 89999999
Q ss_pred ECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCc-Ccc-ccchhhhcCC-------CCCeeeccCCcCccccCc-c
Q 047549 152 SLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS-LSG-FLPQFLMNCT-------NLITLNLRINNFRGDLSA-Y 221 (479)
Q Consensus 152 ~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~-~ 221 (479)
++++|.+.+.+|.. +.++++|++|++++|. +++ .+|..+..++ +|+.|++++|.+. .+|. .
T Consensus 497 ~Ls~N~l~~~iP~~--------l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 497 ELYNCPNMTQLPDF--------LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp EEESCTTCCSCCGG--------GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred ECcCCCCCccChHH--------HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 99999888888865 4557889999999997 887 6787776665 8999999999988 7774 3
Q ss_pred ccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCC-CCEEEccCCCCCCCCCccccccCC
Q 047549 222 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVS-VSYLSINNNNLSNITGAIGILMGC 300 (479)
Q Consensus 222 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~l~~~ 300 (479)
.+..+++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++.+|..+. ....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~-~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN-AKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCC-TTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhh-cccc
Confidence 6788899999999999988 777 7888889999999999988 57777888888 9999999998887664221 1223
Q ss_pred CCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCch-hhcCCCCCCEEeCCCCccccccCcccCC--
Q 047549 301 KNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT-WLGKLKKLQVLDLGSNQITGPIPGWLGN-- 377 (479)
Q Consensus 301 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 377 (479)
++|+.|++++|.+.+.+|.... .......++|+.|++++|+++ .+|. .+..+++|+.|+|++|++. .+|..+..
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~-~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISC-SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSS-CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred CCCCEEECcCCcCCCccccchh-hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 4589999999988876653221 111113357889999999888 4554 4457888999999999888 44543322
Q ss_pred ------CCCCcEEEccCCcccccCCcccc--CCccccccccccccCCCCcccCccccccccccccccc------ccccC-
Q 047549 378 ------MPNLFYIDLSYNSISGEFPKEFC--GLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQY------NKLFS- 442 (479)
Q Consensus 378 ------l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------n~l~~- 442 (479)
+++|++|+|++|+++ .+|..+. .+++|+.+++++|..... ...+....+|+.+++++ |++..
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSC--CCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCcc--chhhhcCCCCCEEECCCCCCccccccccc
Confidence 238899999999888 7787776 888899888887765542 12344677788888866 44442
Q ss_pred CC---------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 443 LP---------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 443 ~~---------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
+| ..|++++|++ +.+|..+. ++|+.|||++|+++
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 23 2689999999 58888876 58999999999874
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-48 Score=409.25 Aligned_cols=331 Identities=30% Similarity=0.450 Sum_probs=232.3
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC--CCCCEEEcCCcccccCCCCCCcCCCC-CCCcEEEc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV--PFLSILDFSHNYFRGHCQLPSGLGNF-SKLQTFRA 129 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~L~~L~L~~n~l~~~~~l~~~~~~l-~~L~~L~l 129 (479)
++++|++++|.+++.+|..+..+++|++|++++|.+.+..+.. ++|++|++++|.+++ .+|..+... ++|++|++
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~--~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG--EIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEE--SCCCCSCTTCTTCSEEEC
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCC--ccCHHHHhhcCcCCEEEC
Confidence 3444444444444444444444444444444444444333222 455555555555544 455544432 55566666
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC-CCCeee
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT-NLITLN 208 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ 208 (479)
++|.+.+.+|..+..+++|++|++++|.+.+.+|... +..+++|++|++++|.+++.+|..+..++ +|+.|+
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~-------l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT-------LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH-------HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH-------HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 6655555555555555666666666655554444321 45677788888888888777777777776 788888
Q ss_pred ccCCcCccccCccccCC--CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCC
Q 047549 209 LRINNFRGDLSAYNFST--LHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (479)
+++|.+.+.++. .+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 375 Ls~N~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 375 LSSNNFSGPILP-NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp CCSSEEEEECCT-TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCCCcCCCcCh-hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 888887766654 3333 6788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCc
Q 047549 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 287 l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
+++..+ ..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|++++.+|.+++.+++|++|++++|+
T Consensus 454 l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 454 LEGEIP--QELMYVKTLETLILDFNDLTGEIPSGLS------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGG------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCcCC--HHHcCCCCceEEEecCCcccCcCCHHHh------cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 874322 4567788888888888888887776544 67888899999888888888888888889999999998
Q ss_pred cccccCcccCCCCCCcEEEccCCcccccCCccccC
Q 047549 367 ITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 367 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
+.+.+|..+..+++|++|++++|++++.+|..+..
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 88888888888888999999888888777765543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.8e-44 Score=371.61 Aligned_cols=408 Identities=19% Similarity=0.154 Sum_probs=297.5
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.++++|++++|.+++..|..+.++++|++|++++|++++..+.. ++|++|++++|.+++ ..|..++.+++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF--MAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE--ECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc--cChhhhcccccccEe
Confidence 47999999999999988999999999999999999998876543 899999999999985 567789999999999
Q ss_pred EccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC--
Q 047549 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI-- 205 (479)
Q Consensus 128 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~-- 205 (479)
++++|.+++..+..+.++++|++|++++|.+.+..... +..+++|++|++++|.+++..+..+..+++|+
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--------GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--------TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCccc--------ccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 99999999666778999999999999999988743332 23367777777777777766666677777766
Q ss_pred eeeccCCcCcc---------------------------------------------------------------------
Q 047549 206 TLNLRINNFRG--------------------------------------------------------------------- 216 (479)
Q Consensus 206 ~L~l~~n~l~~--------------------------------------------------------------------- 216 (479)
.|++++|.+.+
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 66666665542
Q ss_pred -----ccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC-CC
Q 047549 217 -----DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS-NI 290 (479)
Q Consensus 217 -----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 290 (479)
.++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred cCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 122223566777888888888777 66777777888888888888887776777777888888888887765 22
Q ss_pred CCccccccCCCCCcEEEccCccccccC--CCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 291 TGAIGILMGCKNLRMLLLCKIFFHEAI--PDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 291 ~~~~~~l~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
+. ..+..+++|+.|++++|.+.+.. +..+ ..+++|++|++++|++.+..|..+..+++|++|++++|++.
T Consensus 342 ~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 342 GT--GCLENLENLRELDLSHDDIETSDCCNLQL------RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CS--STTTTCTTCCEEECCSSCCCEEEESTTTT------TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred ch--hhhhccCcCCEEECCCCccccccCcchhc------ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 22 34667778888888877776543 2222 25677888888888877777777777788888888888777
Q ss_pred cccCc-ccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCC--cccCcccccccccccccccccccCCC-
Q 047549 369 GPIPG-WLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQ--LQLPLFVPETKCALYNQQYNKLFSLP- 444 (479)
Q Consensus 369 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~n~l~~~~- 444 (479)
+..+. .+..+++|++|++++|.+++..|..+.++++|+.+++++|..... .....+....+|+.+++++|+++.++
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 55443 477777788888888877777777777777777777776644321 11133455566667777766665442
Q ss_pred ---------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 ---------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ---------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|++++..|..+.+++.| .|++++|+++
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 146666666666666666666666 6666666653
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-42 Score=363.13 Aligned_cols=177 Identities=18% Similarity=0.138 Sum_probs=99.8
Q ss_pred cCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc--cccCccc
Q 047549 298 MGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT--GPIPGWL 375 (479)
Q Consensus 298 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~~ 375 (479)
..+++|+.|++++|.+.+.++.... ..+++|++|++++|++.+..+..|..+++|++|++++|.+. +..|..+
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEW-----RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGG-----TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred hCCCCCCEEeCCCCcCccccCcccc-----cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 3444444444444444433332111 13445555555555555444444445555555555555443 3455666
Q ss_pred CCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCc-------ccCcccccccccccccccccccCCCC---
Q 047549 376 GNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQL-------QLPLFVPETKCALYNQQYNKLFSLPP--- 445 (479)
Q Consensus 376 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~~n~l~~~~~--- 445 (479)
..+++|++|++++|++++..|..|.++++|+.+++++|...... ....+.....|+.+++++|+++.+|.
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 67777777777777777666666777777777777665433221 11124455666677777776665543
Q ss_pred -------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 446 -------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 446 -------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.|++++|++++..+..|.++++|+.|++++|+++
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 3677777777444445566667777777776654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-43 Score=365.99 Aligned_cols=418 Identities=16% Similarity=0.121 Sum_probs=328.8
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
..++++|++++|.+++..|..+..+++|++|++++|++++..+.. ++|++|++++|.+++ ..+..++++++|++
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS--IDFIPLHNQKTLES 133 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC--GGGSCCTTCTTCCE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc--CCcchhccCCcccE
Confidence 457888888888888777788888888888888888887765432 778888888887763 22455677777777
Q ss_pred EEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCC-----C-----------------------C---
Q 047549 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN-----I-----------------------G--- 175 (479)
Q Consensus 127 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-----~-----------------------~--- 175 (479)
|++++|.+.+.....+..+++|++|++++|.+++..+..+..+..+. + .
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence 77777777753333344477777777777766655444333322210 0 0
Q ss_pred ------------------------------------CC--CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccc
Q 047549 176 ------------------------------------KL--ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGD 217 (479)
Q Consensus 176 ------------------------------------~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 217 (479)
.+ .+|++|++++|.+++..+..+..+++|++|++++|.+. .
T Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 292 (606)
T 3t6q_A 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292 (606)
T ss_dssp CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-C
Confidence 00 15778888888888777778999999999999999998 7
Q ss_pred cCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccCh-hhhhccCCCCEEEccCCCCCCCCCcccc
Q 047549 218 LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQIS-PTILALVSVSYLSINNNNLSNITGAIGI 296 (479)
Q Consensus 218 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 296 (479)
+|. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++........
T Consensus 293 lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 293 LPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 775 68889999999999999997778889999999999999999885554 4588999999999999999866433356
Q ss_pred ccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc-hhhcCCCCCCEEeCCCCccccccCccc
Q 047549 297 LMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP-TWLGKLKKLQVLDLGSNQITGPIPGWL 375 (479)
Q Consensus 297 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 375 (479)
+..+++|+.|++++|.+.+..+..+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFK------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTT------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhc------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 78899999999999998877666544 67899999999999987655 448899999999999999998888889
Q ss_pred CCCCCCcEEEccCCccccc---CCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCC-------
Q 047549 376 GNMPNLFYIDLSYNSISGE---FPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP------- 445 (479)
Q Consensus 376 ~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~------- 445 (479)
..+++|++|++++|++++. .+..+..+++|+.+++++|...... ...+....+|+.+++++|+++..+.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID-QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC-hhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 9999999999999999863 3467889999999999887554332 2445667889999999998875422
Q ss_pred --eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 446 --AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 446 --~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.|++++|++++..|..+..+++|+.|++++|+++
T Consensus 525 ~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 525 GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ccEEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 6899999999888889999999999999999873
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-42 Score=359.67 Aligned_cols=405 Identities=15% Similarity=0.140 Sum_probs=241.2
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
..++++|++++|++++..+..+.++++|++|++++|.+++..+.. ++|++|++++|.+++ ..|..++++++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS--FSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC--CCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc--cChhhcCCcccCCE
Confidence 357999999999999888889999999999999999999886543 899999999999985 45788999999999
Q ss_pred EEccccccccCCCccCCCCCCCCEEECCCCcccc-cCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC
Q 047549 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSG-AISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI 205 (479)
Q Consensus 127 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 205 (479)
|++++|.+.+..+..++++++|++|++++|.+.+ .+|.. +.++++|++|++++|.+++..+..+..+++|+
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY--------FSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG--------GGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHh--------HhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 9999999987666789999999999999999886 44665 45678888889988888877676666655544
Q ss_pred ----eeeccCCcCccccCccccCCCCCCcEEEccCC--------------------------------------------
Q 047549 206 ----TLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN-------------------------------------------- 237 (479)
Q Consensus 206 ----~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-------------------------------------------- 237 (479)
.+++++|.+. .++...+... +|++|++++|
T Consensus 181 ~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 181 QVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred cccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 5777777665 3333233222 4555555444
Q ss_pred -------------------------------------cccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEE
Q 047549 238 -------------------------------------NFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYL 280 (479)
Q Consensus 238 -------------------------------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (479)
.+. .+| .+..+++|++|++++|.+. .+|. + .+++|+.|
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L 333 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L-DLPFLKSL 333 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C-CCSSCCEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C-CCCcccee
Confidence 433 233 4445556666666666552 2332 2 44444444
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccC--CCCcc-----------------ccccccccCCccEEEeeCC
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI--PDENQ-----------------ITISSYAFQNLVVLGIGNC 341 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~--~~~~~-----------------~~~~~~~~~~L~~L~l~~n 341 (479)
++++|..... ..+..+++|+.|++++|.+.+.. +.... .......+++|++|++++|
T Consensus 334 ~l~~n~~~~~----~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 334 TLTMNKGSIS----FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409 (606)
T ss_dssp EEESCSSCEE----CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS
T ss_pred eccCCcCccc----hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCC
Confidence 4444422110 12334455555555555544321 11100 0000013344555555555
Q ss_pred cceecCc-hhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc-cCCccccCCccccccccccccCCCCc
Q 047549 342 EIKGQIP-TWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG-EFPKEFCGLPALALQEAKNRADGNQL 419 (479)
Q Consensus 342 ~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~ 419 (479)
++.+..+ ..+..+++|++|++++|++.+..|..+..+++|++|++++|++++ ..|..|.++++|+.+++++|......
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 489 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC
Confidence 5444333 344455555555555555554444555555555555555555554 24555555555555555544322211
Q ss_pred ccCcccccccccccccccccccCC-C---------CeEEccCCcccccCChhhhccc-ccCeeeCCCCCC
Q 047549 420 QLPLFVPETKCALYNQQYNKLFSL-P---------PAIYLRNNGLNGSIPIEIGNVM-FLHVLDLSLNNF 478 (479)
Q Consensus 420 ~~~~~~~~~~l~~~~l~~n~l~~~-~---------~~l~ls~n~l~~~~~~~~~~~~-~L~~L~ls~N~l 478 (479)
...+....+|+.+++++|+++.+ | ..|++++|+++ .+|..+..++ +|+.|++++|++
T Consensus 490 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 490 -WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp -TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred -hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 12233444555555555555433 1 13555555555 4444455554 355555555554
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-42 Score=355.27 Aligned_cols=415 Identities=17% Similarity=0.169 Sum_probs=296.6
Q ss_pred CccceeEEeCC------------CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEc
Q 047549 40 CCLWEGIKCDS------------EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDF 103 (479)
Q Consensus 40 ~c~w~~v~c~~------------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L 103 (479)
.|.|.++ |+. .+++++|++++|++++..|..+..+++|++|++++|++++.++.. ++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4778776 642 247999999999999988899999999999999999999887543 89999999
Q ss_pred CCcccccCCCCCCcCCCCCCCcEEEcccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCE
Q 047549 104 SHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKS 182 (479)
Q Consensus 104 ~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~ 182 (479)
++|.+++ ..|..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.++.. .+.++++|++
T Consensus 82 s~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-------~~~~l~~L~~ 152 (549)
T 2z81_A 82 SDNHLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-------DFAGLTSLNE 152 (549)
T ss_dssp TTSCCCS--CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-------TTTTCCEEEE
T ss_pred CCCccCc--cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh-------hhhcccccCe
Confidence 9999984 333458999999999999999985 35678899999999999999844444321 2567888999
Q ss_pred EEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccC--Cc-cCcCCCCCCEEEcc
Q 047549 183 LKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF--PL-TLTSCMFLTAIRLS 259 (479)
Q Consensus 183 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~-~~~~~~~L~~L~l~ 259 (479)
|++++|.+++..|..+..+++|+.|+++.|.+. .++...+..+++|++|++++|.+++.. |. ....+++|+.|+++
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred eeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 999999998888888888888888888888765 444434456778888888888776531 11 12234555555555
Q ss_pred CCcccccChhh---------------------------------------------------------------hhccCC
Q 047549 260 GNKIEEQISPT---------------------------------------------------------------ILALVS 276 (479)
Q Consensus 260 ~n~l~~~~~~~---------------------------------------------------------------~~~l~~ 276 (479)
+|.+++..+.. +....+
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence 55544322211 112234
Q ss_pred CCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc--hhhcCC
Q 047549 277 VSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP--TWLGKL 354 (479)
Q Consensus 277 L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~l~~l 354 (479)
|+.|++++|.+..+|. ..+..+++|+.|++++|.+.+.++.... ....+++|++|++++|++++..+ ..+..+
T Consensus 312 L~~L~l~~n~l~~ip~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 312 VKRITVENSKVFLVPC--SFSQHLKSLEFLDLSENLMVEEYLKNSA---CKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp CCEEEEESSCCCCCCH--HHHHHCTTCCEEECCSSCCCHHHHHHHT---CTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred ceEEEeccCccccCCH--HHHhcCccccEEEccCCccccccccchh---hhhccccCcEEEccCCcccccccchhhhhcC
Confidence 5555555555554432 1123567777777777777654321100 01245677888888877764322 456777
Q ss_pred CCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccc
Q 047549 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYN 434 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 434 (479)
++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+. +.|+.+++++|...... ....+|+.++
T Consensus 387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~ 457 (549)
T 2z81_A 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS-----LFLPRLQELY 457 (549)
T ss_dssp TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC-----CCCTTCCEEE
T ss_pred CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc-----ccCChhcEEE
Confidence 78888888888777 56667777777888888888776 3343332 46777777766443321 3567888999
Q ss_pred cccccccCCCC--------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 435 QQYNKLFSLPP--------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 435 l~~n~l~~~~~--------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
+++|+++.+|. .|++++|++++..|..+..+++|+.|++++|+++
T Consensus 458 Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 458 ISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred CCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 99999998874 5999999999888888999999999999999874
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.1e-41 Score=353.42 Aligned_cols=417 Identities=22% Similarity=0.227 Sum_probs=286.4
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.++++|++++|.+++..|..++++++|++|++++|.++++++. .++|++|++++|.+.+ ..|..++++++|++|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITL 126 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCSCTTTTCTTCCEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc--cChhHccccCCCCEE
Confidence 3566666666666665566666666666666666666655442 1566666666666552 222345556666666
Q ss_pred EccccccccCCCccCCCCCCCCEEECCCCcccc--------------------------cCCccccccCC----------
Q 047549 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSG--------------------------AISNGVVNLTS---------- 171 (479)
Q Consensus 128 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------~~~~~~~~l~~---------- 171 (479)
++++|.+.+..+..+.++++|++|++++|.+++ ..+..+..+..
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 666666555555555555555555555554443 22222211110
Q ss_pred --------------------C-------------CCCCC--CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcc
Q 047549 172 --------------------L-------------NIGKL--ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG 216 (479)
Q Consensus 172 --------------------l-------------~~~~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 216 (479)
+ .+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 0 11122 236677777776666666666667777777777766543
Q ss_pred ccCc--------------------------------cccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccC----
Q 047549 217 DLSA--------------------------------YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSG---- 260 (479)
Q Consensus 217 ~~~~--------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~---- 260 (479)
..+. ..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 2211 1344556677777777777665555566555555555544
Q ss_pred ------------------------CcccccChhhhhccCCCCEEEccCCCCCC-CCCccccccCCCCCcEEEccCccccc
Q 047549 261 ------------------------NKIEEQISPTILALVSVSYLSINNNNLSN-ITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 261 ------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
|.+++..+..+..+++|+.|++++|.++. ++. ..+..+++|+.|++++|.+.+
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS--GGGTTCTTCCEEECCSCSEEE
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc--ccccCcccccEEecCCCCcce
Confidence 44555556667777888888888887753 222 457789999999999999887
Q ss_pred cCCCCccccccccccCCccEEEeeCCcce--ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 316 AIPDENQITISSYAFQNLVVLGIGNCEIK--GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
..+..+. .+++|++|++++|.+. +..|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++
T Consensus 445 ~~~~~~~------~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 445 LTRNSFA------LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp CCTTTTT------TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred eChhhhh------cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence 6665544 6789999999999986 4578889999999999999999998788889999999999999999986
Q ss_pred cCC--------ccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCC----------eEEccCCccc
Q 047549 394 EFP--------KEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP----------AIYLRNNGLN 455 (479)
Q Consensus 394 ~~p--------~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~----------~l~ls~n~l~ 455 (479)
..+ ..|.+++.|+.+++++|... .++...+....+|+.+++++|+++.+|. .|++++|+++
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 532 23788999999999887654 3333457788899999999999998764 5999999999
Q ss_pred ccCChhhh-cccccCeeeCCCCCCC
Q 047549 456 GSIPIEIG-NVMFLHVLDLSLNNFS 479 (479)
Q Consensus 456 ~~~~~~~~-~~~~L~~L~ls~N~l~ 479 (479)
+..|..+. .+++|+.|++++|++.
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred ccChhHhcccccccCEEEccCCCcc
Confidence 87777787 7999999999999874
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.5e-41 Score=345.93 Aligned_cols=392 Identities=18% Similarity=0.132 Sum_probs=303.4
Q ss_pred CCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCc
Q 047549 50 SEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQ 125 (479)
Q Consensus 50 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~ 125 (479)
...++++|++++|.+++..|..+.++++|++|++++|.+++..|.. ++|++|++++|.+++ ..+..++++++|+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS--LESFPIGQLITLK 131 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC--SSSSCCTTCTTCC
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc--ccccccCCCCCCC
Confidence 4568999999999999888889999999999999999999885543 899999999999984 2336789999999
Q ss_pred EEEcccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCC-------------------CCCCCCCCEEEc
Q 047549 126 TFRAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN-------------------IGKLANLKSLKL 185 (479)
Q Consensus 126 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-------------------~~~~~~L~~L~L 185 (479)
+|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..+..+. .....+|++|++
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L 211 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeec
Confidence 99999999975 5788999999999999999998877666554332110 011124555555
Q ss_pred cCCcCc----------------------------------------------------------c---------------
Q 047549 186 HTNSLS----------------------------------------------------------G--------------- 192 (479)
Q Consensus 186 ~~n~l~----------------------------------------------------------~--------------- 192 (479)
++|.++ +
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 291 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEE
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEE
Confidence 554432 0
Q ss_pred -------ccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc
Q 047549 193 -------FLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE 265 (479)
Q Consensus 193 -------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (479)
.++ .+..+++|++|++++|.+ +.++. + .+++|++|++++|...+.. .+..+++|++|++++|.+++
T Consensus 292 l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 292 LAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred ecCccchhhh-hccccccCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 112 334445555555555555 34552 2 5666666666666443332 45677888889999888877
Q ss_pred cC--hhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcc
Q 047549 266 QI--SPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 266 ~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.. +..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+.+..+.... ..+++|++|++++|++
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFSAF-----LSLEKLLYLDISYTNT 436 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTTTT-----TTCTTCCEEECTTSCC
T ss_pred CcchhhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccChhhh-----hccccCCEEECcCCCC
Confidence 63 778889999999999999988665 5677889999999999999887662221 2678999999999999
Q ss_pred eecCchhhcCCCCCCEEeCCCCcccc-ccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccC
Q 047549 344 KGQIPTWLGKLKKLQVLDLGSNQITG-PIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLP 422 (479)
Q Consensus 344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 422 (479)
++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..|..|.+++.|+.+++++|...... ..
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~ 515 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-SS 515 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE-GG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC-HH
Confidence 98889999999999999999999997 47889999999999999999999999999999999999999987654432 24
Q ss_pred cccccccccccccccccccCCCC----------eEEccCCcccccCC
Q 047549 423 LFVPETKCALYNQQYNKLFSLPP----------AIYLRNNGLNGSIP 459 (479)
Q Consensus 423 ~~~~~~~l~~~~l~~n~l~~~~~----------~l~ls~n~l~~~~~ 459 (479)
.+....+|+.+++++|+++++|. .+++++|.+....+
T Consensus 516 ~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred HccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 45667889999999999986653 58999999985433
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=362.06 Aligned_cols=412 Identities=19% Similarity=0.187 Sum_probs=267.2
Q ss_pred ccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcC-C----CCCCCCEEEcCCcccccCCCCC
Q 047549 41 CLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLS-P----SVPFLSILDFSHNYFRGHCQLP 115 (479)
Q Consensus 41 c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~----~~~~L~~L~L~~n~l~~~~~l~ 115 (479)
|.|..|.+ -.+++++|+|++|.+++..+..+..+++|++|++++|...+.. + ..++|++|++++|.+.+ ..|
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~--~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF--LHP 90 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE--ECT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc--cCH
Confidence 45666666 5678999999999999988999999999999999999554332 3 23899999999999985 568
Q ss_pred CcCCCCCCCcEEEccccccccCCCcc--CCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc
Q 047549 116 SGLGNFSKLQTFRAGFSYLSGSIPDD--VSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193 (479)
Q Consensus 116 ~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~ 193 (479)
..++++++|++|++++|.+.+.++.. +.++++|++|++++|.+++..+... +.++++|++|++++|.+++.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-------~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS-------FGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG-------GGTCSSCCEEEEESSCCCCC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchh-------HhhCCCCCEEECCCCcCCee
Confidence 89999999999999999998766655 8899999999999999887654321 56678888888888888777
Q ss_pred cchhhhcC--CCCCeeeccCCcCccccCccccCCC---------------------------------------------
Q 047549 194 LPQFLMNC--TNLITLNLRINNFRGDLSAYNFSTL--------------------------------------------- 226 (479)
Q Consensus 194 ~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~l--------------------------------------------- 226 (479)
.+..+..+ ++|+.|+++.|.+.+..+. .+..+
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CHHHcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 66666655 5666666666655533322 22222
Q ss_pred -----------------------CCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEcc
Q 047549 227 -----------------------HNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSIN 283 (479)
Q Consensus 227 -----------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (479)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 345555555555554444455555555555555555555555555555555555555
Q ss_pred CCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCC
Q 047549 284 NNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLG 363 (479)
Q Consensus 284 ~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 363 (479)
+|.++.+.. ..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+++ ++ .+++|+.|+++
T Consensus 323 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~~------~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~ 389 (844)
T 3j0a_A 323 YNLLGELYS--SNFYGLPKVAYIDLQKNHIAIIQDQTFK------FLEKLQTLDLRDNALTT-IH----FIPSIPDIFLS 389 (844)
T ss_dssp SCCCSCCCS--CSCSSCTTCCEEECCSCCCCCCCSSCSC------SCCCCCEEEEETCCSCC-CS----SCCSCSEEEEE
T ss_pred CCCCCccCH--HHhcCCCCCCEEECCCCCCCccChhhhc------CCCCCCEEECCCCCCCc-cc----CCCCcchhccC
Confidence 555543322 2344555555555555555433332221 34555555555555542 11 13334444444
Q ss_pred CCccccccC----------------------cccCCCCCCcEEEccCCcccccCCc-cccCCccccccccccccCCCCc-
Q 047549 364 SNQITGPIP----------------------GWLGNMPNLFYIDLSYNSISGEFPK-EFCGLPALALQEAKNRADGNQL- 419 (479)
Q Consensus 364 ~n~l~~~~~----------------------~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~- 419 (479)
+|++.. +| ..+..+++|++|++++|++++..+. .+..+++|+.+++++|......
T Consensus 390 ~N~l~~-l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 390 GNKLVT-LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp SCCCCC-CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred CCCccc-ccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 433331 11 1133567777777777777754433 3556777777777766543211
Q ss_pred ---ccCcccccccccccccccccccCCCC----------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 420 ---QLPLFVPETKCALYNQQYNKLFSLPP----------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 420 ---~~~~~~~~~~l~~~~l~~n~l~~~~~----------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
....+...++|+.+++++|+++++|. .|++++|++++..|..+. ++|+.|++++|+|+
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL 539 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence 11335566778888888888877653 488888888865555555 78888888888874
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-41 Score=345.25 Aligned_cols=410 Identities=17% Similarity=0.158 Sum_probs=295.9
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
..++++|++++|++++..+..+.++++|++|++++|++++.++.. ++|++|++++|.+++ ..|..+..+++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc--cCHhhhcCcccccc
Confidence 347899999999999888889999999999999999998876543 899999999999884 34568899999999
Q ss_pred EEccccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC-
Q 047549 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL- 204 (479)
Q Consensus 127 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L- 204 (479)
|++++|.+++..+..++++++|++|++++|.+.+. +|.. +.++++|++|++++|.+++..+..+..+++|
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG--------GGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhh--------hcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 99999999865555789999999999999988863 4655 4567899999999999988777778877777
Q ss_pred ---CeeeccCCcCccccCccccCCCCCCcEEEccCC--------------------------------------------
Q 047549 205 ---ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN-------------------------------------------- 237 (479)
Q Consensus 205 ---~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-------------------------------------------- 237 (479)
+.+++++|.+.+ ++...+... +|++|++++|
T Consensus 177 ~~~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 177 LLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred hhhhhcccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 788888887763 322233322 4555544443
Q ss_pred --------------cccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCcc---------
Q 047549 238 --------------NFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI--------- 294 (479)
Q Consensus 238 --------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------- 294 (479)
.+.+..|..+..+++|+.|++++|.+.+ +|..+..+ +|+.|++++|.+..++...
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l 332 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTF 332 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeC
Confidence 2222334444555566666666665553 34444444 5555555555555333210
Q ss_pred --------ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCc
Q 047549 295 --------GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 295 --------~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
.....+++|+.|++++|.+.+.... ......+++|++|++++|++.+..+. +..+++|++|++++|.
T Consensus 333 ~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC----SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp ESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE----EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred cCCccccccccccCCCCCEEeCcCCccCccccc----cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence 0014556677777766665543200 00112567888888888888754444 8888888888888888
Q ss_pred cccccC-cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCC-C
Q 047549 367 ITGPIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSL-P 444 (479)
Q Consensus 367 l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~-~ 444 (479)
+.+..+ ..+..+++|++|++++|.+++..|..|.+++.|+.+++++|......-...+....+|+.+++++|+++.+ |
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 886655 56788889999999999998888888889999999988876533111113455677888999999888765 2
Q ss_pred ---------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 ---------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ---------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|++++..|..+.++++|+.|++++|+++
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 26899999999888888999999999999999874
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-39 Score=324.22 Aligned_cols=350 Identities=19% Similarity=0.209 Sum_probs=230.5
Q ss_pred CCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCC-CCcCCCCCCCcEEEccccccccCCCccCCCCCCCCE
Q 047549 76 THLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQL-PSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLED 150 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 150 (479)
++|++|++++|.+++..+. +++|++|++++|.+.+ .+ +..+..+++|++|++++|.+.+..|..+.++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC--EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccc--eECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 4566666666666555332 2566666666665542 23 345777777888888887777666777777788888
Q ss_pred EECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh-hhcCCCCCeeeccCCcCccccCccccCCC--C
Q 047549 151 ISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF-LMNCTNLITLNLRINNFRGDLSAYNFSTL--H 227 (479)
Q Consensus 151 L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~l--~ 227 (479)
|++++|.+++..+..- .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+ ..+..+ .
T Consensus 108 L~L~~n~l~~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~ 180 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGN------FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGK 180 (455)
T ss_dssp EECTTSCCBTHHHHSS------TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTTC
T ss_pred EeCCCCCCCccccCcc------cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh-hhhhccccc
Confidence 8888877765433220 1456777888888888777665655 6777888888888887764333 244443 5
Q ss_pred CCcEEEccCCcccccCCcc--------CcCCCCCCEEEccCCcccccChhhhhcc---CCCCEEEccCCCCCCCCCcc--
Q 047549 228 NLHTIDLGNNNFTGSFPLT--------LTSCMFLTAIRLSGNKIEEQISPTILAL---VSVSYLSINNNNLSNITGAI-- 294 (479)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~-- 294 (479)
+++.+++++|.+.+..+.. +..+++|++|++++|.+++..+..+... .+++.|++++|.........
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 7778888888776543322 2345678888888888887777766554 77888888877554221100
Q ss_pred ------ccc--cCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCc
Q 047549 295 ------GIL--MGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 295 ------~~l--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
..+ ...++|+.|++++|.+.+..+..+. .+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS------HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcc------cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 011 1235677777777777766555443 56677777777777776666677777777777777777
Q ss_pred cccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCe
Q 047549 367 ITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA 446 (479)
Q Consensus 367 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~ 446 (479)
+.+..+..+..+++|++|++++|++++..|..|.++++|+.
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--------------------------------------- 375 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE--------------------------------------- 375 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE---------------------------------------
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE---------------------------------------
Confidence 77666667777777777777777777666777777777754
Q ss_pred EEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 447 IYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 447 l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
|++++|++++..+..+..+++|+.|++++|+++
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 566666666544455566777777777777653
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=347.39 Aligned_cols=420 Identities=19% Similarity=0.154 Sum_probs=300.7
Q ss_pred CCCEEEEECCCCCccccc-cccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCc--CCCCCC
Q 047549 51 EAQVTHLWLPDRGLRGSI-YPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSG--LGNFSK 123 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~--~~~l~~ 123 (479)
..++++|++++|...+.+ |..+.++++|++|+|++|.+.+..|.. ++|++|++++|.+++ .+|.. ++++++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD--AVLKDGYFRNLKA 124 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS--CCSTTCCCSSCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc--ccccCccccccCC
Confidence 457788888887555555 667788888888888888887765433 778888888888765 34443 777888
Q ss_pred CcEEEccccccccCCC-ccCCCCCCCCEEECCCCcccccCCcccccc-----CCC-------------CCCCCC------
Q 047549 124 LQTFRAGFSYLSGSIP-DDVSAAASLEDISLPVNQLSGAISNGVVNL-----TSL-------------NIGKLA------ 178 (479)
Q Consensus 124 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~l-------------~~~~~~------ 178 (479)
|++|++++|.+.+..+ ..+.++++|++|++++|.+++..+..+..+ ..+ .+..++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 8888888888775443 467788888888888887776665554432 111 122222
Q ss_pred CCCEEEccCCcCccccchhhhc--------------------------------------CCCCCeeeccCCcCccccCc
Q 047549 179 NLKSLKLHTNSLSGFLPQFLMN--------------------------------------CTNLITLNLRINNFRGDLSA 220 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~--------------------------------------l~~L~~L~l~~n~l~~~~~~ 220 (479)
.|++|++++|.+++..+..+.. .++|+.|++++|.+.+ ++.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~ 283 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNS 283 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECS
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-cCh
Confidence 3788888888766544433321 2578888888888873 434
Q ss_pred cccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCC
Q 047549 221 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGC 300 (479)
Q Consensus 221 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~ 300 (479)
..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..++. ..+..+
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l 361 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFL 361 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS--SCSCSC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh--hhhcCC
Confidence 477888888888888888887777788888888888888888888777888888888888888888876654 356778
Q ss_pred CCCcEEEccCccccccCC--CCccccc-------cccccCCccEEEeeCCcceec-CchhhcCCCCCCEEeCCCCccccc
Q 047549 301 KNLRMLLLCKIFFHEAIP--DENQITI-------SSYAFQNLVVLGIGNCEIKGQ-IPTWLGKLKKLQVLDLGSNQITGP 370 (479)
Q Consensus 301 ~~L~~L~l~~n~~~~~~~--~~~~~~~-------~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~ 370 (479)
++|+.|++++|.+.+... ....+.+ ......+++.+++++|++.+. .+..+..+++|+.|++++|++.+.
T Consensus 362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence 888888888887764211 0000000 001123456666666666542 223456899999999999999865
Q ss_pred cCc-ccCCCCCCcEEEccCCccc-----ccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCC
Q 047549 371 IPG-WLGNMPNLFYIDLSYNSIS-----GEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLP 444 (479)
Q Consensus 371 ~~~-~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~ 444 (479)
.+. .+..+++|++|++++|.++ +..+..|.+++.|+.+++++|..... ....+....+|+.+++++|+|+.+|
T Consensus 442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC-CTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc-ChhHccchhhhheeECCCCCCCccC
Confidence 433 4566899999999999997 34456788999999999988755433 2345667889999999999998875
Q ss_pred C--------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 P--------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ~--------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
. .|++++|++++..|..+ .+|+.|++++|++.
T Consensus 521 ~~~~~~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 521 HNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCCSCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred hhhhhccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence 4 59999999998888765 47899999999874
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.2e-40 Score=339.29 Aligned_cols=384 Identities=16% Similarity=0.175 Sum_probs=308.3
Q ss_pred CCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCC-------------------------------CCCCcC--
Q 047549 76 THLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHC-------------------------------QLPSGL-- 118 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~-------------------------------~l~~~~-- 118 (479)
.+++.|+|+++.+.|..|.. ++|++|++++|.+.... ..|..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47899999999998876543 89999999999762100 000000
Q ss_pred -----------------CCCCCCcEEEcc--ccccccCCCccCCCCCCCCEEECCCCccccc-----------------C
Q 047549 119 -----------------GNFSKLQTFRAG--FSYLSGSIPDDVSAAASLEDISLPVNQLSGA-----------------I 162 (479)
Q Consensus 119 -----------------~~l~~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~ 162 (479)
.....++.+.+. .|++++ +|..++++++|++|++++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 011122222222 467887 899999999999999999999984 6
Q ss_pred CccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc-Ccc-ccCccccCCC------CCCcEEEc
Q 047549 163 SNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN-FRG-DLSAYNFSTL------HNLHTIDL 234 (479)
Q Consensus 163 ~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~l------~~L~~L~l 234 (479)
|..+. +.++++|++|++++|.+.+.+|..+..+++|++|++++|. +++ .+|. .+..+ ++|++|++
T Consensus 240 p~~l~------~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 240 TEDLK------WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp TSCCC------GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEEC
T ss_pred chhhh------hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEEC
Confidence 66532 1278999999999999999999999999999999999998 887 6765 45554 99999999
Q ss_pred cCCcccccCCc--cCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCC-CcEEEccCc
Q 047549 235 GNNNFTGSFPL--TLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKN-LRMLLLCKI 311 (479)
Q Consensus 235 ~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~-L~~L~l~~n 311 (479)
++|.++ .+|. .+..+++|++|++++|.+++.+| .+..+++|++|++++|.++.++. .+..+++ |+.|++++|
T Consensus 313 ~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~---~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 313 GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA---NFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCT---TSEEECTTCCEEECCSS
T ss_pred CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccH---hhhhhcccCcEEEccCC
Confidence 999999 8888 89999999999999999997788 89999999999999999986664 4677888 999999999
Q ss_pred cccccCCCCccccccccccCCccEEEeeCCcceecCchhhc-------CCCCCCEEeCCCCccccccCcccCCCCCCcEE
Q 047549 312 FFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLG-------KLKKLQVLDLGSNQITGPIPGWLGNMPNLFYI 384 (479)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 384 (479)
.+. .+|..+.. ..+++|++|++++|++++..|..+. .+++|++|++++|++....+..+..+++|++|
T Consensus 388 ~l~-~lp~~~~~----~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 388 KLK-YIPNIFDA----KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp CCS-SCCSCCCT----TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred cCc-ccchhhhh----cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 998 56654331 2345899999999999988888888 78899999999999995555566779999999
Q ss_pred EccCCcccccCCc-cccCC-------ccccccccccccCCCCcccCcc-cccccccccccccccccCCCC---------e
Q 047549 385 DLSYNSISGEFPK-EFCGL-------PALALQEAKNRADGNQLQLPLF-VPETKCALYNQQYNKLFSLPP---------A 446 (479)
Q Consensus 385 ~L~~N~l~~~~p~-~~~~l-------~~L~~l~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~n~l~~~~~---------~ 446 (479)
++++|+++ .+|. .+... +.|+.+++++|..... +...+ ....+|+.+++++|+++.+|. .
T Consensus 463 ~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 463 NLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp ECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred ECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence 99999999 5554 34333 3899999988765532 21111 267889999999999998875 5
Q ss_pred EEc------cCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 447 IYL------RNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 447 l~l------s~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
|++ ++|++.+.+|..+.++++|+.|++++|+++
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 888 568889999999999999999999999974
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=335.57 Aligned_cols=398 Identities=18% Similarity=0.179 Sum_probs=270.2
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
+++++|++++|.+++..|..+..+++|++|++++|++++..+. .++|++|++++|.++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV---KISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC---EEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee---ecCcc--ccCCccEE
Confidence 5788899999888887778888889999999999988877442 378899999999887 46665 78889999
Q ss_pred Ecccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCC--CEEEccCCcC--ccccchhhhcCC
Q 047549 128 RAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANL--KSLKLHTNSL--SGFLPQFLMNCT 202 (479)
Q Consensus 128 ~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L--~~L~L~~n~l--~~~~~~~l~~l~ 202 (479)
++++|.+++ .+|..++++++|++|++++|.+++. . +..+++| ++|++++|.+ ++..|..+..+.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~--------~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S--------VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G--------GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccchh---h--------ccccccceeeEEEeecccccccccccccccccc
Confidence 999998876 4678888888999999988887652 1 3445566 8888888888 666666665543
Q ss_pred -CCCeeeccCCcCccccCccccCCCCCCcEEEccCCc-------ccccCCccCcCCCCCCEEEccCCc------------
Q 047549 203 -NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN-------FTGSFPLTLTSCMFLTAIRLSGNK------------ 262 (479)
Q Consensus 203 -~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~~~L~~L~l~~n~------------ 262 (479)
+...+++++|.+.+.++...+..+++|+.+++++|. +.+.+| .+..+++|+.|++++|.
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHH
Confidence 222445555555555554455556666666666654 333333 34444444444444444
Q ss_pred ---------------ccccChhhh-----hccCCCCEEEccCCCCCCCCC-ccccccCCCCCcEEEccCccccccCCCCc
Q 047549 263 ---------------IEEQISPTI-----LALVSVSYLSINNNNLSNITG-AIGILMGCKNLRMLLLCKIFFHEAIPDEN 321 (479)
Q Consensus 263 ---------------l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 321 (479)
+++..|..+ ..+++|+.+++++|.+ .+|. .+..+....+|+.|++++|.+.....
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--- 319 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--- 319 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc---
Confidence 433333333 3344444444444433 2221 01111111345555555555433211
Q ss_pred cccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc--ccCcccCCCCCCcEEEccCCcccccCCc-c
Q 047549 322 QITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG--PIPGWLGNMPNLFYIDLSYNSISGEFPK-E 398 (479)
Q Consensus 322 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~ 398 (479)
...+++|++|++++|++++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++.+|. .
T Consensus 320 -----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 320 -----PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp -----CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred -----hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 0256788888888888887778888888888888888888885 4556788888888888888888874554 4
Q ss_pred ccCCccccccccccccCCCCcccCcccccccccccccccccccCCCC---------eEEccCCcccccCChh-hhccccc
Q 047549 399 FCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP---------AIYLRNNGLNGSIPIE-IGNVMFL 468 (479)
Q Consensus 399 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~---------~l~ls~n~l~~~~~~~-~~~~~~L 468 (479)
+..++.|+.+++++|....... ... ..+++.+++++|+++.+|. .|++++|+++ .+|.. +..+++|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~--~~l-~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIF--RCL-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGG--GSC-CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred hccCccCCEEECcCCCCCcchh--hhh-cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 7788888888887765432211 111 1578888888888887764 5999999999 67765 8999999
Q ss_pred CeeeCCCCCCC
Q 047549 469 HVLDLSLNNFS 479 (479)
Q Consensus 469 ~~L~ls~N~l~ 479 (479)
+.|++++|+++
T Consensus 471 ~~L~l~~N~~~ 481 (520)
T 2z7x_B 471 QKIWLHTNPWD 481 (520)
T ss_dssp CEEECCSSCBC
T ss_pred cEEECcCCCCc
Confidence 99999999975
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-39 Score=343.28 Aligned_cols=377 Identities=18% Similarity=0.178 Sum_probs=272.0
Q ss_pred CcCCCcCCCC---CCCCEEEcCCcccccC---------------CCCCCcCC--CCCCCcEEEccccccccCCCccCCCC
Q 047549 86 NHLSFLSPSV---PFLSILDFSHNYFRGH---------------CQLPSGLG--NFSKLQTFRAGFSYLSGSIPDDVSAA 145 (479)
Q Consensus 86 n~l~~~~~~~---~~L~~L~L~~n~l~~~---------------~~l~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l 145 (479)
|+++++++.+ ++|++|+|++|.+++. +.+|..++ ++++|++|++++|.+.+.+|..+.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666644333 7788888888887740 01787777 88888888888888888888888888
Q ss_pred CCCCEEECCCCc-ccc-cCCccccccCCCCCCCCCCCCEEEccCCcCccccch--hhhcCCCCCeeeccCCcCccccCcc
Q 047549 146 ASLEDISLPVNQ-LSG-AISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ--FLMNCTNLITLNLRINNFRGDLSAY 221 (479)
Q Consensus 146 ~~L~~L~l~~n~-l~~-~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~ 221 (479)
++|++|++++|+ +++ .+|..+..+.. .+..+++|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+|
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~-~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-- 589 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLAD-DEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-- 589 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHH-CTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhh-cccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--
Confidence 888888888887 777 67766655431 2456678888888888888 6676 7888888888888888887 676
Q ss_pred ccCCCCCCcEEEccCCcccccCCccCcCCCC-CCEEEccCCcccccChhhhhccC--CCCEEEccCCCCCCCCCcc-ccc
Q 047549 222 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF-LTAIRLSGNKIEEQISPTILALV--SVSYLSINNNNLSNITGAI-GIL 297 (479)
Q Consensus 222 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~-~~l 297 (479)
.+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+. +|+.|++++|.+.+..+.+ ..+
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 6778888888888888888 77777888887 888888888887 4566665554 3888888888886543211 122
Q ss_pred c--CCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcC--------CCCCCEEeCCCCcc
Q 047549 298 M--GCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK--------LKKLQVLDLGSNQI 367 (479)
Q Consensus 298 ~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~Ls~n~l 367 (479)
. .+++|+.|++++|.+. .+|.... ..+++|+.|++++|+++ .+|..+.. +++|+.|+|++|++
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~-----~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELF-----ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHH-----HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHH-----ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC
Confidence 2 3457888888888877 3333221 14577888888888887 45544332 23788888888888
Q ss_pred ccccCcccC--CCCCCcEEEccCCcccccCCccccCCcccccccccccc--CCC--Cccc-Ccccccccccccccccccc
Q 047549 368 TGPIPGWLG--NMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA--DGN--QLQL-PLFVPETKCALYNQQYNKL 440 (479)
Q Consensus 368 ~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~--~~~--~~~~-~~~~~~~~l~~~~l~~n~l 440 (479)
. .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.+++++|. ... .... ..+....+|+.+++++|++
T Consensus 741 ~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 741 T-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp C-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred c-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 8 6677776 78888888888888885 67778888888888886533 111 0111 2445567788888888888
Q ss_pred cCCCC-------eEEccCCcccccCChhhhcccccCeeeCCCCCC
Q 047549 441 FSLPP-------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNF 478 (479)
Q Consensus 441 ~~~~~-------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l 478 (479)
..+|. .|++++|++....+..+.....+..+.+.+|++
T Consensus 819 ~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 819 RKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CBCCSCCCSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CccCHhhcCCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 77765 599999999977778888777777787777764
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-38 Score=322.70 Aligned_cols=401 Identities=19% Similarity=0.184 Sum_probs=315.6
Q ss_pred EECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 57 LWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 57 L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
++-++.+++ .+|..+. +++++|++++|.+++..+. +++|++|++++|.+++ ..+..+.++++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc--cCcccccCchhCCEEeCcCC
Confidence 444444554 3455443 5899999999999887653 3899999999999985 34567899999999999999
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCcc-ccchhhhcCCCCCeeeccC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG-FLPQFLMNCTNLITLNLRI 211 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~ 211 (479)
.+++..+..|.++++|++|++++|.+++..+.. ++.+++|++|++++|.+++ .+|..+.++++|++|++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS--------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred cCCccCHhhhcCccccccccccccccccCCCcc--------ccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 999777889999999999999999988654433 5678999999999999987 3689999999999999999
Q ss_pred CcCccccCccccCCCCCC----cEEEccCCcccccCCccCcCCCCCCEEEccCC--------------------------
Q 047549 212 NNFRGDLSAYNFSTLHNL----HTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN-------------------------- 261 (479)
Q Consensus 212 n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-------------------------- 261 (479)
|.+. .++...+..+++| +++++++|.+++..|..+... +|+.|++++|
T Consensus 159 n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 159 NKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp SCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred Cccc-eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 9998 4544467777777 899999999997777666555 6888888776
Q ss_pred --------------------------------cccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEcc
Q 047549 262 --------------------------------KIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLC 309 (479)
Q Consensus 262 --------------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~ 309 (479)
.+.+..+..+..+++|+.|++++|.++.++.. +..+ +|+.|+++
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~---~~~~-~L~~L~l~ 312 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNF-GWQHLELV 312 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC---CSCC-CCSEEEEE
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh---hccC-CccEEeec
Confidence 33344566778889999999999999877643 3344 66677776
Q ss_pred CccccccCCCCcc--------------ccccccccCCccEEEeeCCcceecC--chhhcCCCCCCEEeCCCCccccccCc
Q 047549 310 KIFFHEAIPDENQ--------------ITISSYAFQNLVVLGIGNCEIKGQI--PTWLGKLKKLQVLDLGSNQITGPIPG 373 (479)
Q Consensus 310 ~n~~~~~~~~~~~--------------~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~ 373 (479)
+|.+. .+|.... .......+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+.
T Consensus 313 ~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 391 (570)
T 2z63_A 313 NCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391 (570)
T ss_dssp SCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE
T ss_pred cCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc
Confidence 66655 2222100 0001136788999999999988653 67888999999999999999865444
Q ss_pred ccCCCCCCcEEEccCCcccccCC-ccccCCccccccccccccCCCCcccCccccccccccccccccccc--CCC------
Q 047549 374 WLGNMPNLFYIDLSYNSISGEFP-KEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLF--SLP------ 444 (479)
Q Consensus 374 ~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~--~~~------ 444 (479)
+..+++|++|++++|.+++..| ..+.++++|+.++++++...... ...+....+|+.+++++|+++ .+|
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred -ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 8899999999999999997766 57899999999999887543322 234566788999999999886 233
Q ss_pred ---CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 ---PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ---~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|++++..|..+.++++|+.|++++|+++
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 36999999999888999999999999999999875
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.5e-38 Score=321.31 Aligned_cols=402 Identities=16% Similarity=0.160 Sum_probs=293.4
Q ss_pred EeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCC
Q 047549 47 KCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFS 122 (479)
Q Consensus 47 ~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~ 122 (479)
.|...+ + .+.++++++ .+|+.+. ++|++|++++|++++.++. .++|++|++++|.+++ ..|..+..++
T Consensus 3 ~C~~~~-~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~ 74 (549)
T 2z81_A 3 SCDASG-V--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--IEGDAFYSLG 74 (549)
T ss_dssp EECTTS-E--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--ECTTTTTTCT
T ss_pred cCCCCc-e--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--cChhhccccc
Confidence 465444 2 788888887 4566554 7999999999999887653 3899999999999985 4557899999
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCc-Cccccchhhhc
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNS-LSGFLPQFLMN 200 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 200 (479)
+|++|++++|.+.+..+..+.++++|++|++++|.+++. .|.. +.++++|++|++++|. +....+..+..
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL--------FPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS--------CTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh--------hhccCCccEEECCCCccccccCHhhhhc
Confidence 999999999999977667799999999999999998863 3332 5678999999999998 44444468899
Q ss_pred CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCcc-CcCCCCCCEEEccCCcccccC--h-hhhhccCC
Q 047549 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQI--S-PTILALVS 276 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~--~-~~~~~l~~ 276 (479)
+++|++|++++|.+.+..+. .+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+++.. + .....+++
T Consensus 147 l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp CCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred ccccCeeeccCCcccccChh-hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence 99999999999999865554 7888999999999999876 33433 356899999999999998742 1 22234567
Q ss_pred CCEEEccCCCCCCCCC--ccccccCCC-----------------------------------------------------
Q 047549 277 VSYLSINNNNLSNITG--AIGILMGCK----------------------------------------------------- 301 (479)
Q Consensus 277 L~~L~L~~n~l~~~~~--~~~~l~~~~----------------------------------------------------- 301 (479)
|+.|++++|.+++... ....+..++
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 7777777765542100 001112222
Q ss_pred ------CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCch---hhcCCCCCCEEeCCCCccccccC
Q 047549 302 ------NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT---WLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 302 ------~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
+|+.|++++|.+. .+|.... ..+++|++|++++|++++..|. .+..+++|++|++++|++++..+
T Consensus 305 ~~~~~~~L~~L~l~~n~l~-~ip~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 305 VYSLLEKVKRITVENSKVF-LVPCSFS-----QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp HHHHSTTCCEEEEESSCCC-CCCHHHH-----HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred hhhhcccceEEEeccCccc-cCCHHHH-----hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 3333333333332 1121110 2467888888888888765543 36678888888888888875432
Q ss_pred --cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCC------
Q 047549 373 --GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLP------ 444 (479)
Q Consensus 373 --~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~------ 444 (479)
..+..+++|++|++++|+++ .+|..+..+++|+.+++++|...... ... ...++.+++++|++++++
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~---~~~-~~~L~~L~Ls~N~l~~~~~~l~~L 453 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK---TCI-PQTLEVLDVSNNNLDSFSLFLPRL 453 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC---TTS-CTTCSEEECCSSCCSCCCCCCTTC
T ss_pred chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc---chh-cCCceEEECCCCChhhhcccCChh
Confidence 45778888888888888888 67888888888888888876643321 111 257888999999888654
Q ss_pred CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|+++ .+|. ...+++|++|++++|+++
T Consensus 454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred cEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 36999999999 7776 577999999999999885
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-38 Score=301.19 Aligned_cols=265 Identities=28% Similarity=0.430 Sum_probs=165.3
Q ss_pred ccChhhHHHHHHhHhcCCCCC--CCCCCCCCCcc--ceeEEeCCC---CCEEEEECCCCCccc--cccccccCCCCCCee
Q 047549 11 ACNQIDQETLLSLNFNASNPP--LNWSFSTDCCL--WEGIKCDSE---AQVTHLWLPDRGLRG--SIYPFTGKLTHLCHL 81 (479)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~--~~w~~~~~~c~--w~~v~c~~~---~~l~~L~l~~~~l~~--~~~~~l~~l~~L~~L 81 (479)
+|.++|+.||++||+++.++. ..|..+.+||. |.||.|+.. ++|++|+++++++++ .+|+.+..+++|++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L 81 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence 588999999999999997654 78988889998 999999864 799999999999999 899999999999999
Q ss_pred ecCC-CcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCC
Q 047549 82 NLSH-NHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVN 156 (479)
Q Consensus 82 ~L~~-n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (479)
++++ |.+.+..|. .++|++|++++|.+++ .+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 9984 777654432 1555555555555543 44555555555555555555555555555555555555555555
Q ss_pred cccccCCccccccCCCCCCCCC-CCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEcc
Q 047549 157 QLSGAISNGVVNLTSLNIGKLA-NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235 (479)
Q Consensus 157 ~l~~~~~~~~~~l~~l~~~~~~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 235 (479)
.+++.+|..+. .++ +|++|++++|.+++..|..+..++ |++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 160 ~l~~~~p~~l~--------~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 160 RISGAIPDSYG--------SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLA 229 (313)
T ss_dssp CCEEECCGGGG--------CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-GGCCTTSCCSEEECC
T ss_pred cccCcCCHHHh--------hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-HHHhcCCCCCEEECC
Confidence 55544444322 233 455555555555555555555544 5555555555543222 244555555555555
Q ss_pred CCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+|.+++..|. +..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 5555433332 444455555555555555445555555555555555555444
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.6e-37 Score=312.29 Aligned_cols=392 Identities=19% Similarity=0.192 Sum_probs=271.7
Q ss_pred EEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 54 VTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 54 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.++++++++++++ +|..+. ++|++|++++|.+++.++. .++|++|++++|.+++ ..|..+..+++|++|++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE--ECTTTTTTCTTCCEEEC
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc--CCHHHhCCCCCCCEEEC
Confidence 3899999999986 666554 8999999999999988643 3899999999999985 45778999999999999
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC--Ce
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL--IT 206 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~ 206 (479)
++|.++ .+|.. .+++|++|++++|.+++. .|.. +.++++|++|++++|.+++. .+..+++| +.
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~--------~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~ 173 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKE--------FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSC 173 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGG--------GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEE
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHh--------hcccCcccEEecCCCccccC---chhhhhhceeeE
Confidence 999998 66765 799999999999998864 3444 56689999999999999853 45555666 99
Q ss_pred eeccCCcC--ccccCccccC--------------------------CCCCCcEEEccCCcc-----cccCCccCcCCCCC
Q 047549 207 LNLRINNF--RGDLSAYNFS--------------------------TLHNLHTIDLGNNNF-----TGSFPLTLTSCMFL 253 (479)
Q Consensus 207 L~l~~n~l--~~~~~~~~~~--------------------------~l~~L~~L~l~~n~l-----~~~~~~~~~~~~~L 253 (479)
|++++|.+ .+..+. .+. .+++|+.+++++|.. .+. ...+..+++|
T Consensus 174 L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L 251 (562)
T 3a79_B 174 ILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTL 251 (562)
T ss_dssp EEEEESSCCCCSSSCC-EEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSC
T ss_pred EEeecccccccccCcc-cccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcc
Confidence 99999988 533332 232 334455555555421 000 0112222333
Q ss_pred CEEEccCCcccccChhh---hhccCCCCEEEccCCCCC-CCCCcc----------------------------ccccCCC
Q 047549 254 TAIRLSGNKIEEQISPT---ILALVSVSYLSINNNNLS-NITGAI----------------------------GILMGCK 301 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~-~~~~~~----------------------------~~l~~~~ 301 (479)
+.++++++.+.+..... .....+|++|++++|.++ .+|..+ ..+....
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 33333332222110000 011224555555555544 222211 0011123
Q ss_pred CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccc--cCcccCCCC
Q 047549 302 NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGP--IPGWLGNMP 379 (479)
Q Consensus 302 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~ 379 (479)
+|+.|++++|.+...... ..+++|++|++++|++++..|..+..+++|++|++++|++++. .|..+..++
T Consensus 332 ~L~~L~l~~n~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCP--------PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp CCSEEEEESSCCCCCCCC--------SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred cceEEEccCCCcccccCc--------cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 466677766665432110 2567889999999998877888888899999999999988852 346688889
Q ss_pred CCcEEEccCCcccccCC-ccccCCccccccccccccCCCCcccCccccc-ccccccccccccccCCCC---------eEE
Q 047549 380 NLFYIDLSYNSISGEFP-KEFCGLPALALQEAKNRADGNQLQLPLFVPE-TKCALYNQQYNKLFSLPP---------AIY 448 (479)
Q Consensus 380 ~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~n~l~~~~~---------~l~ 448 (479)
+|++|++++|++++.+| ..+..++.|+.+++++|...... +... .+++.+++++|+++.+|. .|+
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELN 479 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG----GSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEE
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch----hhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEE
Confidence 99999999999987455 45788888988888876543211 1122 578889999999888764 599
Q ss_pred ccCCcccccCChh-hhcccccCeeeCCCCCCC
Q 047549 449 LRNNGLNGSIPIE-IGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 449 ls~n~l~~~~~~~-~~~~~~L~~L~ls~N~l~ 479 (479)
+++|+++ .+|.. +..+++|+.|++++|+++
T Consensus 480 L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 480 VASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 9999999 67766 999999999999999874
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-36 Score=302.83 Aligned_cols=351 Identities=18% Similarity=0.167 Sum_probs=285.3
Q ss_pred eeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCC-CccCCCCCCCCEEECCCCcc
Q 047549 80 HLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSI-PDDVSAAASLEDISLPVNQL 158 (479)
Q Consensus 80 ~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l 158 (479)
.++.+++.++.++.-.++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+
T Consensus 14 ~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPELPAHVNYVDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCSSCCCE--ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCCCCCccCEEEecCCccCc--CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 3455555555555533789999999999985 45778999999999999999987444 56799999999999999999
Q ss_pred cccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh--hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccC
Q 047549 159 SGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF--LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236 (479)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 236 (479)
++..|.. +.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+...+..+++|++|++++
T Consensus 92 ~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 92 LQLETGA--------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp CEECTTT--------TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred CccChhh--------ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 8877765 566899999999999999765555 889999999999999998555654488999999999999
Q ss_pred CcccccCCccCcCC--CCCCEEEccCCcccccChhhh--------hccCCCCEEEccCCCCCCCC-CccccccCCCCCcE
Q 047549 237 NNFTGSFPLTLTSC--MFLTAIRLSGNKIEEQISPTI--------LALVSVSYLSINNNNLSNIT-GAIGILMGCKNLRM 305 (479)
Q Consensus 237 n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~-~~~~~l~~~~~L~~ 305 (479)
|.+++..+..+..+ .+|+.+++++|.+.+..+..+ ..+++|++|++++|.++... ..+......++|+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 99998888877766 689999999999987654432 35578999999999987432 22222334588999
Q ss_pred EEccCccccccCCCCcc------ccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCC
Q 047549 306 LLLCKIFFHEAIPDENQ------ITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMP 379 (479)
Q Consensus 306 L~l~~n~~~~~~~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 379 (479)
|++++|...+....... ..+.....++|++|++++|++++..|..+..+++|++|++++|++.+..|..|..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 99998866543221111 111112346899999999999988899999999999999999999988888999999
Q ss_pred CCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCC
Q 047549 380 NLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIP 459 (479)
Q Consensus 380 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~ 459 (479)
+|++|++++|.+++..|..|.+++.|+. |++++|++++..|
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~---------------------------------------L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEV---------------------------------------LDLSYNHIRALGD 364 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCE---------------------------------------EECCSSCCCEECT
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCE---------------------------------------EECCCCcccccCh
Confidence 9999999999999888888888888864 7899999998889
Q ss_pred hhhhcccccCeeeCCCCCCC
Q 047549 460 IEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 460 ~~~~~~~~L~~L~ls~N~l~ 479 (479)
..+..+++|+.|++++|+++
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCS
T ss_pred hhccccccccEEECCCCccc
Confidence 99999999999999999985
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=316.28 Aligned_cols=400 Identities=16% Similarity=0.129 Sum_probs=305.4
Q ss_pred EEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC----CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcc
Q 047549 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP----SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130 (479)
Q Consensus 55 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~ 130 (479)
++|++++++++ .+|..+. ++|++|++++|.+++.++ ..++|++|++++|.+++ ..|..++++++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY--LDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE--EEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC--cChHHhhcccCCCEEecC
Confidence 47899999998 4677665 899999999999998764 34899999999999985 447789999999999999
Q ss_pred ccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC--Cee
Q 047549 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL--ITL 207 (479)
Q Consensus 131 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L 207 (479)
+|+++ .+|.. .+++|++|++++|.+++. +|.. ++++++|++|++++|.+++ ..+..+++| +.|
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~--------~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKE--------FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGG--------GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhh--------hccCCcceEEEecCcccch---hhccccccceeeEE
Confidence 99998 56665 799999999999999863 5554 5568899999999999885 456777888 999
Q ss_pred eccCCcC--ccccCccccCCCC-CCcEEEccCCcccccCC-ccCcCCCCCCEEEccCCc-------ccccChhhhhccCC
Q 047549 208 NLRINNF--RGDLSAYNFSTLH-NLHTIDLGNNNFTGSFP-LTLTSCMFLTAIRLSGNK-------IEEQISPTILALVS 276 (479)
Q Consensus 208 ~l~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~ 276 (479)
++++|.+ .+..+. .+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|. +.+.++ .+..+++
T Consensus 144 ~l~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~ 221 (520)
T 2z7x_B 144 LLVLGETYGEKEDPE-GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK 221 (520)
T ss_dssp EEEECTTTTSSCCTT-TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred Eeecccccccccccc-cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence 9999998 544443 444443 34467888888776554 356778999999999997 555444 6777787
Q ss_pred CCEEEccCCCCCCCCC-ccccccCCCCCcEEEccCccccccCCCCcccccccccc-------------------------
Q 047549 277 VSYLSINNNNLSNITG-AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAF------------------------- 330 (479)
Q Consensus 277 L~~L~L~~n~l~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~------------------------- 330 (479)
|+.|++++|.++.... ........++|+.|++++|.+.+.+|...... ....+
T Consensus 222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~ 300 (520)
T 2z7x_B 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY-SGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300 (520)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC-CSCCCCEEEEEEEEECCCCSCTHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc-ccccCceeEeccccccceecchhhhhcccc
Confidence 7777777766542100 00001123467777777777666555443100 00012
Q ss_pred -CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc--cCCccccCCccccc
Q 047549 331 -QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG--EFPKEFCGLPALAL 407 (479)
Q Consensus 331 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~ 407 (479)
.+|+.|++++|++.... .+..+++|++|++++|++.+..|..+..+++|++|++++|++++ .+|..+.++++|+.
T Consensus 301 ~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 301 NMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred cCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 34677777777665321 12688999999999999998889999999999999999999997 56788999999999
Q ss_pred cccccccCCCCcccCcccccccccccccccccccC-----C---CCeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 408 QEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFS-----L---PPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 408 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~-----~---~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
+++++|......+...+....+++.+++++|+++. + ...|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 99998876654444556777899999999999852 2 247999999999 89999999999999999999985
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-35 Score=308.82 Aligned_cols=394 Identities=18% Similarity=0.174 Sum_probs=242.7
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCC-cCCCCCCCcE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQT 126 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~ 126 (479)
..+++|+|++|++++..+.++.++++|++|+|++|+|+++++.. ++|++|+|++|.++ .+|. .|.++++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~---~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---EECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC---CCCHHHhcCCCCCCE
Confidence 47999999999999888889999999999999999999887653 89999999999998 4564 6899999999
Q ss_pred EEccccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC
Q 047549 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI 205 (479)
Q Consensus 127 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 205 (479)
|++++|++++..+..|+++++|++|++++|.++.. .|.. +..+++|++|++++|++++..+..+..+.+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG--------GGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh--------hccchhhhhhcccCccccccccccccchhhhh
Confidence 99999999976667799999999999999998764 3443 45688999999999999877776665544332
Q ss_pred ----eeeccCCcCccccCccc-----------------------------------------------------------
Q 047549 206 ----TLNLRINNFRGDLSAYN----------------------------------------------------------- 222 (479)
Q Consensus 206 ----~L~l~~n~l~~~~~~~~----------------------------------------------------------- 222 (479)
.++++.|.+. .++...
T Consensus 201 ~~~~~~~ls~n~l~-~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 201 LLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp TCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhhcccCccc-ccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 3444444332 111000
Q ss_pred ----------------------cCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccCh------------
Q 047549 223 ----------------------FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQIS------------ 268 (479)
Q Consensus 223 ----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------ 268 (479)
+....+++.+.+.++.+... ..+.....++.|++.+|.+....+
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 00011122222222221110 112222334444444433322111
Q ss_pred -------hhhhccCCCCEEEccCCCCCCCCCccccc-----------------------cCCCCCcEEEccCccccccCC
Q 047549 269 -------PTILALVSVSYLSINNNNLSNITGAIGIL-----------------------MGCKNLRMLLLCKIFFHEAIP 318 (479)
Q Consensus 269 -------~~~~~l~~L~~L~L~~n~l~~~~~~~~~l-----------------------~~~~~L~~L~l~~n~~~~~~~ 318 (479)
.....+++|+.++++.|.+.......... ..+++|+.+++..+......+
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 11223456666666666554322222223 334444444444444333322
Q ss_pred CCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc-cccCcccCCCCCCcEEEccCCcccccCCc
Q 047549 319 DENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT-GPIPGWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 319 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
.... ..+.+++.++++.|.+....+..+..++.++.|++++|.+. ...|..|..+++|++|+|++|++++..|.
T Consensus 438 ~~~~-----~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~ 512 (635)
T 4g8a_A 438 FSVF-----LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512 (635)
T ss_dssp SCTT-----TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred cccc-----ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH
Confidence 2111 13455566666666665555555556666666666666533 23455556666666666666666655566
Q ss_pred cccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcc-cccCeeeCCCC
Q 047549 398 EFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNV-MFLHVLDLSLN 476 (479)
Q Consensus 398 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~-~~L~~L~ls~N 476 (479)
.|.++++|+.|++++|....... ..+...++| ..|++++|++++..|..+.++ ++|+.|++++|
T Consensus 513 ~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L--------------~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSL--------------QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCC-GGGTTCTTC--------------CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred HHcCCCCCCEEECCCCcCCCCCh-hHHhCCCCC--------------CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 66666666665555543221110 111111111 368999999999999999998 68999999999
Q ss_pred CCC
Q 047549 477 NFS 479 (479)
Q Consensus 477 ~l~ 479 (479)
+|+
T Consensus 578 p~~ 580 (635)
T 4g8a_A 578 DFA 580 (635)
T ss_dssp CBC
T ss_pred CCc
Confidence 985
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=297.72 Aligned_cols=286 Identities=18% Similarity=0.202 Sum_probs=166.4
Q ss_pred CeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCc
Q 047549 79 CHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQ 157 (479)
Q Consensus 79 ~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 157 (479)
+.++.++++++.++... +.+++|++++|.+++ ..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT--LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccce--ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45666666666555443 455555555555543 223345555555555555555554445555555555555555554
Q ss_pred ccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCC
Q 047549 158 LSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 237 (479)
Q Consensus 158 l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 237 (479)
++ ...+..|..+++|++|++++|.+.+ +....+..+++|++|++++|
T Consensus 92 l~--------------------------------~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 92 LK--------------------------------LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CC--------------------------------SCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCT
T ss_pred CC--------------------------------ccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCC
Confidence 44 3333334444445555555554442 22224445555555555555
Q ss_pred cccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccC
Q 047549 238 NFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317 (479)
Q Consensus 238 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 317 (479)
.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|...+.+
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEE
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCcccccc
Confidence 5554445555555556666666665555555555556666666666665554432 33555566666666666555544
Q ss_pred CCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCc
Q 047549 318 PDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
+.... ...+|++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++++..|.
T Consensus 217 ~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 217 TPNCL------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp CTTTT------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred Ccccc------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 43322 234778888888877754445677778888888888887766666777778888888888888777777
Q ss_pred cccCCccccc
Q 047549 398 EFCGLPALAL 407 (479)
Q Consensus 398 ~~~~l~~L~~ 407 (479)
.|.++++|+.
T Consensus 291 ~~~~l~~L~~ 300 (477)
T 2id5_A 291 AFRGLNYLRV 300 (477)
T ss_dssp TBTTCTTCCE
T ss_pred HhcCcccCCE
Confidence 7777777765
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-35 Score=295.31 Aligned_cols=344 Identities=22% Similarity=0.296 Sum_probs=265.2
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC--CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.+++.|+++++.++. ++ .+..+++|++|++++|.+++.++ ..++|++|++++|.+.+ ++. +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD---ITP-LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcccc---Chh-hcCCCCCCEEEC
Confidence 478899999988875 33 47889999999999999888754 33889999999999884 444 888999999999
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeec
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 209 (479)
++|.+.+. +. +..+++|++|++++|.+.+. +. +..+++|++|++. +.+.+.. .+..+++|+.|++
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~---------~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l 184 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SA---------LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDI 184 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GG---------GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEEC
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hh---------hccCCcccEeecC-CcccCch--hhccCCCCCEEEC
Confidence 99998844 33 88899999999999987753 21 5668889999886 4454332 3788899999999
Q ss_pred cCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCC
Q 047549 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN 289 (479)
Q Consensus 210 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (479)
++|.+. .++ .+..+++|++|++++|.+++..| +..+++|+.|++++|.+++. +.+..+++|+.|++++|.++.
T Consensus 185 ~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 185 SSNKVS-DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred cCCcCC-CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc
Confidence 999886 443 47788899999999998886544 67788899999999988764 457788899999999998876
Q ss_pred CCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc
Q 047549 290 ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369 (479)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 369 (479)
.+. +..+++|+.|++++|.+.+..+ . ..+++|++|++++|++.+..+ +..+++|+.|++++|++.+
T Consensus 258 ~~~----~~~l~~L~~L~l~~n~l~~~~~--~------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 258 LAP----LSGLTKLTELKLGANQISNISP--L------AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CGG----GTTCTTCSEEECCSSCCCCCGG--G------TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred chh----hhcCCCCCEEECCCCccCcccc--c------cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 543 6788899999999988876433 1 367889999999998885443 7788999999999999886
Q ss_pred ccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCC
Q 047549 370 PIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLP 444 (479)
Q Consensus 370 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~ 444 (479)
..| +..+++|++|++++|++++. ..+.+++.|+.+++++|...+..+ +.....++.+++++|+++.+|
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECCC
T ss_pred chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCCc
Confidence 655 67888999999999988864 467888888888887765544332 444555555555555555544
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.8e-35 Score=290.62 Aligned_cols=360 Identities=21% Similarity=0.279 Sum_probs=204.9
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC-----------------CCCCEEEcCCcccccCCCC
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV-----------------PFLSILDFSHNYFRGHCQL 114 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----------------~~L~~L~L~~n~l~~~~~l 114 (479)
.++++|+++++.+ +.+|++++++++|++|++++|.+.+..|.. ..+++|++++|.++ .+
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~---~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS---SL 86 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS---CC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc---cC
Confidence 4677888888887 677888888888888888888777554432 13577888888777 34
Q ss_pred CCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCcccc
Q 047549 115 PSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFL 194 (479)
Q Consensus 115 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~ 194 (479)
|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++. +. ..++|++|++++|.+++ +
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~-----------~~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD-----------LPPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS-----------CCTTCCEEECCSSCCSS-C
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC-----------CCCCCCEEECcCCCCCC-C
Confidence 442 2577888888887774 5543 36778888877776642 11 02577777777777775 4
Q ss_pred chhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhcc
Q 047549 195 PQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILAL 274 (479)
Q Consensus 195 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 274 (479)
| .+..+++|++|++++|.+. .++. ..++|++|++++|.+++ +| .+..+++|+.|++++|.+++. |.. .
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~ 214 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---P 214 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---C
T ss_pred c-ccCCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---c
Confidence 5 4777777777777777776 3443 23477777777777774 45 467777777777777777662 221 2
Q ss_pred CCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCC
Q 047549 275 VSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354 (479)
Q Consensus 275 ~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 354 (479)
.+|++|++++|.++.++. +..+++|+.|++++|.+.+ +|. .+++|++|++++|++++ +|.. .
T Consensus 215 ~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~l~~N~l~~-l~~---------~~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPE----LQNLPFLTTIYADNNLLKT-LPD---------LPPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp TTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSS-CCS---------CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred CcccEEECcCCcCCcccc----cCCCCCCCEEECCCCcCCc-ccc---------cccccCEEECCCCcccc-cCcc---c
Confidence 477777777777775542 5667777777777777664 222 23567777777777764 4432 3
Q ss_pred CCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCC-ccccccccccccCCCCcccCccccccccccc
Q 047549 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL-PALALQEAKNRADGNQLQLPLFVPETKCALY 433 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (479)
++|++|++++|++.+ +|.. .++|++|++++|++++ ++ .+ ++|+.+++++|..... +.. ..+++.+
T Consensus 277 ~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~l---p~~--~~~L~~L 342 (454)
T 1jl5_A 277 QSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIEL---PAL--PPRLERL 342 (454)
T ss_dssp TTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCC---CCC--CTTCCEE
T ss_pred CcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccccc---ccc--CCcCCEE
Confidence 567777777777764 2211 2566777777776664 22 22 3566666655443321 111 3556666
Q ss_pred ccccccccCCCC------eEEccCCcccc--cCChhhhcc-------------cccCeeeCCCCCCC
Q 047549 434 NQQYNKLFSLPP------AIYLRNNGLNG--SIPIEIGNV-------------MFLHVLDLSLNNFS 479 (479)
Q Consensus 434 ~l~~n~l~~~~~------~l~ls~n~l~~--~~~~~~~~~-------------~~L~~L~ls~N~l~ 479 (479)
++++|+++++|. .|++++|++++ .+|.++..+ ++|+.|++++|+++
T Consensus 343 ~L~~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 343 IASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred ECCCCccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 777776666543 56777777776 567777666 78999999999874
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.9e-35 Score=298.65 Aligned_cols=338 Identities=19% Similarity=0.199 Sum_probs=218.9
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
.+++++|++++|.+++..+..+..+++|++|++++|++++..+.. ++|++|++++|.++ .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ---NISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC---EECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC---ccCcc--ccccCCE
Confidence 468999999999999988889999999999999999999886543 89999999999998 57776 8999999
Q ss_pred EEcccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCC--CEEEccCCcC--ccccchhhhcC
Q 047549 127 FRAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANL--KSLKLHTNSL--SGFLPQFLMNC 201 (479)
Q Consensus 127 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L--~~L~L~~n~l--~~~~~~~l~~l 201 (479)
|++++|.+.+ .+|..+.++++|++|++++|.+++. . +..+++| ++|++++|.+ ++..|..+..+
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~--------~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D--------LLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T--------TGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccC---c--------hhhhhhceeeEEEeecccccccccCccccccc
Confidence 9999999986 3468899999999999999988752 2 3334555 9999999988 55555444432
Q ss_pred --------------------------C-----------------------------------------------------
Q 047549 202 --------------------------T----------------------------------------------------- 202 (479)
Q Consensus 202 --------------------------~----------------------------------------------------- 202 (479)
+
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 2
Q ss_pred --CCCeeeccCCcCccccCcccc----CCC--------------------------CCCcEEEccCCcccccCCccCcCC
Q 047549 203 --NLITLNLRINNFRGDLSAYNF----STL--------------------------HNLHTIDLGNNNFTGSFPLTLTSC 250 (479)
Q Consensus 203 --~L~~L~l~~n~l~~~~~~~~~----~~l--------------------------~~L~~L~l~~n~l~~~~~~~~~~~ 250 (479)
+|++|++++|.+.+.+|...+ ..+ .+|++|++++|.+.... ....+
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 352 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP 352 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence 333444444444333332111 111 12333333333332110 01455
Q ss_pred CCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCcccccccccc
Q 047549 251 MFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAF 330 (479)
Q Consensus 251 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 330 (479)
++|++|++++|.+++..|..+..+++|++|++++|++++++.....+..+++|+.|++++|.+.+.++.... ..+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-----~~l 427 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-----AWA 427 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-----CCC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-----cCc
Confidence 666666666666666566666666666666666666665443333455666666666666666654443221 144
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEA 410 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~ 410 (479)
++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..++.|+.+++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 5666666666666554443332 46666666666666 44544446666666666666666322223666666666555
Q ss_pred cccc
Q 047549 411 KNRA 414 (479)
Q Consensus 411 ~~~~ 414 (479)
++|.
T Consensus 505 ~~N~ 508 (562)
T 3a79_B 505 HDNP 508 (562)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5443
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=289.59 Aligned_cols=314 Identities=19% Similarity=0.177 Sum_probs=265.2
Q ss_pred EECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 57 LWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 57 L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
++.++.+++ .+|..+. +++++|++++|++++..+. +++|++|++++|.+++ ..|..+.++++|++|++++|
T Consensus 16 v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE--eChhhhhCCccCCEEECCCC
Confidence 444455555 3455543 5899999999999988654 3899999999999985 45788999999999999999
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
.++...+..|.++++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYM--------FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhH--------ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 999665567899999999999999998776654 567899999999999999888889999999999999999
Q ss_pred cCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|+.|++++|.++.++.
T Consensus 163 ~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 163 NLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred cCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 998 5666678999999999999999998878889999999999999998877777666667799999999999987653
Q ss_pred ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|++++..|..|..+++|+.|++++|++++..+
T Consensus 242 --~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 242 --LAVRHLVYLRFLNLSYNPISTIEGSMLH------ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp --HHHTTCTTCCEEECCSSCCCEECTTSCT------TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred --HHhcCccccCeeECCCCcCCccChhhcc------ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 4577888999999999888765554333 67788999999998888778888888999999999998887667
Q ss_pred cccCCCCCCcEEEccCCccc
Q 047549 373 GWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 373 ~~~~~l~~L~~L~L~~N~l~ 392 (479)
..|..+++|++|++++|++.
T Consensus 314 ~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp GGBSCGGGCCEEECCSSCEE
T ss_pred hHcCCCcccCEEEccCCCcc
Confidence 77888888999999998887
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.2e-35 Score=283.68 Aligned_cols=323 Identities=16% Similarity=0.136 Sum_probs=174.9
Q ss_pred CCCCCCCCCcc-ceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCc
Q 047549 32 LNWSFSTDCCL-WEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHN 106 (479)
Q Consensus 32 ~~w~~~~~~c~-w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n 106 (479)
+.|..+.+||. |.+..|. ...+.+............-..++++++|+++++.++.+++.. ++|++|++++|
T Consensus 4 ~~~~~~~~C~~~~~~~~c~----~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n 79 (390)
T 3o6n_A 4 KPRQPEYKCIDSNLQYDCV----FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79 (390)
T ss_dssp ---CCEECBCC------EE----EESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS
T ss_pred CCCCCccceehhhhhhccc----eeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCC
Confidence 46877777774 4444443 111122221111111122234678888888888887766542 67777777777
Q ss_pred ccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEcc
Q 047549 107 YFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLH 186 (479)
Q Consensus 107 ~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~ 186 (479)
.+.+ ..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.++...+.. +..+++|++|+++
T Consensus 80 ~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--------~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 80 QIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--------FHNTPKLTTLSMS 149 (390)
T ss_dssp CCCE--ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECC
T ss_pred cccc--cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH--------hcCCCCCcEEECC
Confidence 7763 23346777777777777777777666666777777777777777766333221 3556777777777
Q ss_pred CCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 187 TNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 187 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
+|.+++..+..+..+++|++|++++|.+++ + .+..+++|+++++++|.+++. ...++|++|++++|.+...
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV 220 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE
T ss_pred CCccCccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec
Confidence 777776666667777777777777776652 2 234566677777776665522 2234566666666666553
Q ss_pred ChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceec
Q 047549 267 ISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ 346 (479)
Q Consensus 267 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 346 (479)
.. ...++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|++++
T Consensus 221 ~~---~~~~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~- 286 (390)
T 3o6n_A 221 RG---PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPFV------KMQRLERLYISNNRLVA- 286 (390)
T ss_dssp EC---CCCSSCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESGGGT------TCSSCCEEECCSSCCCE-
T ss_pred cc---cccccccEEECCCCCCccc----HHHcCCCCccEEECCCCcCCCcChhHcc------ccccCCEEECCCCcCcc-
Confidence 22 1234566666666665533 2344445555555555544443332221 33444555555554442
Q ss_pred CchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 347 IPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++..+..+++|++|++++|++. .+|..+..+++|++|++++|+++
T Consensus 287 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 2333344444555555555444 23333444444555555554444
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.6e-34 Score=283.12 Aligned_cols=342 Identities=20% Similarity=0.185 Sum_probs=239.1
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC-CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP-SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.+++++|+++++.+++. | .+..+++|++|++++|++++.+. ..++|++|++++|.+++ ++ ++.+++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~---~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN---LD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC---CC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCce---ee--cCCCCcCCEEEC
Confidence 45899999999999875 4 78999999999999999998742 23899999999999984 43 889999999999
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeec
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 209 (479)
++|.+++ ++ +..+++|++|++++|.+++. + +..+++|++|++++|...+.+ .+..+++|+.|++
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~----------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D----------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C----------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c----------cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 9999985 44 88999999999999988863 1 567899999999999555444 4778899999999
Q ss_pred cCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCC
Q 047549 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN 289 (479)
Q Consensus 210 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (479)
++|.+++ ++ +..+++|++|++++|.+++. .+..+++|++|++++|.+++ +| +..+++|++|++++|++++
T Consensus 178 s~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 178 SFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred CCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 9999984 44 67889999999999999854 37889999999999999988 44 7788999999999999987
Q ss_pred CCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc
Q 047549 290 ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369 (479)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 369 (479)
++ ...+++|+.|+++.|. |+.+++++|...+.+| +..+++|+.|++++|...+
T Consensus 248 ~~-----~~~l~~L~~L~l~~n~--------------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 248 LD-----VSTLSKLTTLHCIQTD--------------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp CC-----CTTCTTCCEEECTTCC--------------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred cC-----HHHCCCCCEEeccCCC--------------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence 64 3456666666654432 3333333333333332 2333444444444443322
Q ss_pred ccCc--------ccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCccccccccccccccccccc
Q 047549 370 PIPG--------WLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLF 441 (479)
Q Consensus 370 ~~~~--------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~ 441 (479)
.+|. .+..+++|++|++++|++++. + +.+++.|+.+++++|...+ ...+..++++.|.+.
T Consensus 301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~ 368 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFE 368 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEE
T ss_pred eeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEE
Confidence 2221 123334555555555555542 1 4555555555554443221 122333444444443
Q ss_pred CC-----CCeEEccCCcccccCChhhhc
Q 047549 442 SL-----PPAIYLRNNGLNGSIPIEIGN 464 (479)
Q Consensus 442 ~~-----~~~l~ls~n~l~~~~~~~~~~ 464 (479)
+. .+.+++++|+++|.+|..+..
T Consensus 369 g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 369 AEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ecceeeecCccccccCcEEEEcChhHhc
Confidence 21 134789999999999876544
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-33 Score=278.97 Aligned_cols=319 Identities=24% Similarity=0.324 Sum_probs=269.6
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC--CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~ 128 (479)
..++++|++++|.+++..+ +..+++|++|++++|.+++.++ ..++|++|++++|.+++ ++. +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD---IDP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC---CGG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCC---ChH-HcCCCCCCEEE
Confidence 5689999999999987644 9999999999999999988764 33899999999999984 444 88999999999
Q ss_pred ccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeee
Q 047549 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLN 208 (479)
Q Consensus 129 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 208 (479)
+++|.+.+ ++ .+..+++|++|+++ +.+.+.. .+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 141 l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~----------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 141 LSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK----------PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 205 (466)
T ss_dssp EEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG----------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCccCC-Ch-hhccCCcccEeecC-CcccCch----------hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEE
Confidence 99999984 44 48899999999996 3333221 156789999999999999854 3488999999999
Q ss_pred ccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 209 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+.+ ++ .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 206 l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 206 ATNNQISD-IT--PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp CCSSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred ecCCcccc-cc--cccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC
Confidence 99999974 33 266789999999999999853 467889999999999999988655 888999999999999998
Q ss_pred CCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
.++. +..+++|+.|++++|.+.+..+ ...+++|++|++++|++++..| +..+++|++|++++|++.
T Consensus 279 ~~~~----~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 279 NISP----LAGLTALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp CCGG----GTTCTTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred cccc----ccCCCccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 7653 7789999999999999876543 1367899999999999997655 789999999999999998
Q ss_pred cccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccC
Q 047549 369 GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415 (479)
Q Consensus 369 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 415 (479)
+. ..+..+++|++|++++|++++..| +..++.|+.++++++..
T Consensus 345 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 345 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred Cc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 64 468899999999999999998777 88999999999987643
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.9e-33 Score=267.15 Aligned_cols=285 Identities=24% Similarity=0.356 Sum_probs=180.7
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+..+++|++|++++|.+++ ++. +..+++|++|++++|.++.. + . +..+++|++|++++|.+++..+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~-~-~--------~~~l~~L~~L~l~~n~i~~~~~-- 127 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI-S-A--------LQNLTNLRELYLNEDNISDISP-- 127 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-G-G--------GTTCTTCSEEECTTSCCCCCGG--
T ss_pred hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc-h-H--------HcCCCcCCEEECcCCcccCchh--
Confidence 4455555555555555552 222 55555666666655555431 1 1 3445666666666666654322
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 201 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTC
T ss_pred hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcc
Confidence 5556666666666664432322 35566666666666666653322 5566666666666666655332 5566666
Q ss_pred CEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCC
Q 047549 278 SYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKL 357 (479)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 357 (479)
+.+++++|.++..+. +..+++|+.|++++|.+.+..+ . ..+++|++|++++|.+++ + ..+..+++|
T Consensus 202 ~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~--~------~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L 267 (347)
T 4fmz_A 202 HYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP--L------ANLSQLTWLEIGTNQISD-I-NAVKDLTKL 267 (347)
T ss_dssp CEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--G------TTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred ceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc--h------hcCCCCCEEECCCCccCC-C-hhHhcCCCc
Confidence 777776666654432 5566667777777666654332 1 256778888888888774 3 457788888
Q ss_pred CEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCccccccccccccccc
Q 047549 358 QVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQY 437 (479)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 437 (479)
++|++++|++.+. ..+..+++|++|++++|++++..|..+.++++|+.
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~------------------------------ 315 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT------------------------------ 315 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE------------------------------
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE------------------------------
Confidence 8888888888753 35778888888888888888777788888877754
Q ss_pred ccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 438 NKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 438 n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
|++++|++++..| +..+++|+.|++++|+|+
T Consensus 316 ---------L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 ---------LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ---------EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ---------EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 6788888885555 788888999999998875
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-32 Score=263.68 Aligned_cols=302 Identities=22% Similarity=0.310 Sum_probs=237.6
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC--CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~ 128 (479)
.+++++|+++++.++.. +.+..+++|++|++++|.+++.++ ..++|++|++++|.++. ++ .+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~---~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD---IS-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC---CG-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC---ch-HHcCCCcCCEEE
Confidence 35789999999988753 348889999999999999887754 33889999999998873 43 588899999999
Q ss_pred ccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeee
Q 047549 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLN 208 (479)
Q Consensus 129 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 208 (479)
+++|.+.+ ++. +..+++|++|++++|.....++. +..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 117 l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~---------~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 117 LNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP---------LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG---------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred CcCCcccC-chh-hccCCceeEEECCCCCCcccccc---------hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 99999884 444 78889999999998865543332 5678889999999998885543 77889999999
Q ss_pred ccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 209 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+. .++. +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 184 l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 184 LNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp CTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 9999887 4442 6788899999999998875433 7788899999999998887544 788889999999999887
Q ss_pred CCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
.+ ..+..+++|+.|++++|.+.+. + . ...+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 257 ~~----~~~~~l~~L~~L~l~~n~l~~~-~-~------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 257 DI----NAVKDLTKLKMLNVGSNQISDI-S-V------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CC----GGGTTCTTCCEEECCSSCCCCC-G-G------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CC----hhHhcCCCcCEEEccCCccCCC-h-h------hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 65 3467788888888888877653 1 1 136778888888888888777788888888888888888888
Q ss_pred cccCcccCCCCCCcEEEccCCccc
Q 047549 369 GPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 369 ~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
+..| +..+++|++|++++|.++
T Consensus 325 ~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 325 DIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGG--GGGCTTCSEESSSCC---
T ss_pred cccC--hhhhhccceeehhhhccc
Confidence 6555 777888888888888875
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.9e-32 Score=271.56 Aligned_cols=343 Identities=16% Similarity=0.153 Sum_probs=269.9
Q ss_pred ccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccC
Q 047549 66 GSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDV 142 (479)
Q Consensus 66 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 142 (479)
+..+..++.+++|++|++++|.+++.+ .+ ++|++|++++|.+++ +| ++.+++|++|++++|.+++ ++ +
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~---~~--~~~l~~L~~L~Ls~N~l~~-~~--~ 102 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT---LD--LSQNTNLTYLACDSNKLTN-LD--V 102 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC---CC--CTTCTTCSEEECCSSCCSC-CC--C
T ss_pred cccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe---Ec--cccCCCCCEEECcCCCCce-ee--c
Confidence 344557788999999999999999874 33 899999999999984 44 7889999999999999985 33 8
Q ss_pred CCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccc
Q 047549 143 SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYN 222 (479)
Q Consensus 143 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 222 (479)
..+++|++|++++|.+++. + +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~----------~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~ 165 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D----------VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---D 165 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C----------CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---C
T ss_pred CCCCcCCEEECCCCcCCee-c----------CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---c
Confidence 8899999999999988753 2 46788999999999999874 2778899999999999655454 4
Q ss_pred cCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCC
Q 047549 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKN 302 (479)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~ 302 (479)
+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++++ +..+++
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~ 234 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID-----VTPLTQ 234 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC-----CTTCTT
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC-----ccccCC
Confidence 6788999999999999985 44 78889999999999999875 3778899999999999998754 567888
Q ss_pred CcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCc
Q 047549 303 LRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLF 382 (479)
Q Consensus 303 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 382 (479)
|+.|++++|.+.+..+ ..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+
T Consensus 235 L~~L~l~~N~l~~~~~---------~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDV---------STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp CSEEECCSSCCSCCCC---------TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred CCEEEeeCCcCCCcCH---------HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCC
Confidence 9999999998877432 25678888887665 46778899998877766 56789999
Q ss_pred EEEccCCcccccCCcc--------ccCCccccccccccccCCCCcccCcccccccccccccccccccCCCC--eEEccCC
Q 047549 383 YIDLSYNSISGEFPKE--------FCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP--AIYLRNN 452 (479)
Q Consensus 383 ~L~L~~N~l~~~~p~~--------~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~--~l~ls~n 452 (479)
+|++++|...+.+|.. ++++++|+.+++++|...+. .+....+|+.+++++|+++.++. .+++++|
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l----~l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n 365 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL----DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC----CCTTCTTCSEEECCSSCCCBCTTGGGSSGGGT
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc----ccccCCcCcEEECCCCCCCCccccccccccCC
Confidence 9999999887766642 44556666777766554432 24556677777888887776643 5677777
Q ss_pred cccccCChhhhcccccCeeeCCCCCCC
Q 047549 453 GLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 453 ~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
++.|. +++..|..+++++|+|+
T Consensus 366 ~l~g~-----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 366 NFEAE-----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp SEEEE-----EEEEECCCBCCBTTBEE
T ss_pred cEEec-----ceeeecCccccccCcEE
Confidence 77765 46678889999999874
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-32 Score=286.05 Aligned_cols=395 Identities=20% Similarity=0.199 Sum_probs=262.8
Q ss_pred CccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCC
Q 047549 63 GLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSI 138 (479)
Q Consensus 63 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~ 138 (479)
+++ .+|..+. +++++|||++|+|+++++.. ++|++|+|++|.+++ ..|.+|.++++|++|++++|++++..
T Consensus 42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCCCCC
Confidence 444 4565553 47999999999999887643 899999999999984 23447899999999999999999666
Q ss_pred CccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc-cchhhhcCCCCCeeeccCCcCccc
Q 047549 139 PDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF-LPQFLMNCTNLITLNLRINNFRGD 217 (479)
Q Consensus 139 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~ 217 (479)
+..|.++++|++|++++|.+++..+.. |+++++|++|++++|.++.. .|..+..+++|++|++++|.+.+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~--------~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~- 187 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS- 187 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCC--------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhh--------hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-
Confidence 678999999999999999998665543 67789999999999999764 57888999999999999999984
Q ss_pred cCccccCCCCC----CcEEEccCCcccccCCccCcCCCCCCEEEccCC--------------------------------
Q 047549 218 LSAYNFSTLHN----LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN-------------------------------- 261 (479)
Q Consensus 218 ~~~~~~~~l~~----L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-------------------------------- 261 (479)
++...+..+.+ ...++++.|.++...+.. .....+..+++.+|
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 43334443332 346777777765332222 12222233333332
Q ss_pred --------------------------------------------------cccccChhhhhccCCCCEEEccCCCCCCCC
Q 047549 262 --------------------------------------------------KIEEQISPTILALVSVSYLSINNNNLSNIT 291 (479)
Q Consensus 262 --------------------------------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 291 (479)
.+... ..+.....++.|++.+|.+..++
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcC
Confidence 11111 11222334444444444433221
Q ss_pred Ccc-----------------ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCC
Q 047549 292 GAI-----------------GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354 (479)
Q Consensus 292 ~~~-----------------~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 354 (479)
... .....+++|+.++++.|.+......... .....+|+.+++..+.... .+..+..+
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~----~~~~~~L~~L~~~~~~~~~-~~~~~~~l 419 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS----DFGTISLKYLDLSFNGVIT-MSSNFLGL 419 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH----HHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc----hhhhhhhhhhhcccccccc-cccccccc
Confidence 100 0111233344444444333221110000 0123344444444444432 23345566
Q ss_pred CCCCEEeCCCCcccccc-CcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCccccccccccc
Q 047549 355 KKLQVLDLGSNQITGPI-PGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALY 433 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (479)
+.|+.+++++|...... +..+..+++++.+++++|.+.+..|..+..++.++.+++++|..........+....+|+.+
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 77777777766665443 34567788888999999999888888888889999888877643332233456667888999
Q ss_pred ccccccccCCCC----------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 434 NQQYNKLFSLPP----------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 434 ~l~~n~l~~~~~----------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
++++|+|+++++ .|++++|++++..|..|.++++|++||+++|+|+
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence 999998876632 6999999999888899999999999999999985
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.1e-33 Score=274.36 Aligned_cols=300 Identities=23% Similarity=0.251 Sum_probs=205.0
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
++++|+++++++++. |. -.++|++|++++|.+++++...++|++|++++|.+++ +|.. .++|++|++++|
T Consensus 72 ~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~---l~~~---~~~L~~L~L~~n 141 (454)
T 1jl5_A 72 QAHELELNNLGLSSL-PE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA---LSDL---PPLLEYLGVSNN 141 (454)
T ss_dssp TCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC---CCSC---CTTCCEEECCSS
T ss_pred CCCEEEecCCccccC-CC---CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCc---ccCC---CCCCCEEECcCC
Confidence 457777777777653 32 1357777888777777765555777888888777763 3321 157788888888
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
.+++ +| .+.++++|++|++++|++++ +|.. .++|++|++++|.+++ +| .+..+++|+.|++++|
T Consensus 142 ~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~-----------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 142 QLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL-----------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC-----------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC-----------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence 8774 66 47778888888888887764 3321 2477888888888775 44 4777888888888888
Q ss_pred cCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
.+. .++. ..++|++|++++|.++ .+| .+..+++|++|++++|.+++. |. .+++|++|++++|++++++.
T Consensus 206 ~l~-~l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 206 SLK-KLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp CCS-SCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCCC
T ss_pred cCC-cCCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccCc
Confidence 776 3443 1357888888888777 566 377778888888888877763 32 23678888888888776553
Q ss_pred ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
. .++|+.|++++|.+.+. +. ..++|++|++++|++++ ++. -.++|++|++++|++.+ +|
T Consensus 275 ~------~~~L~~L~ls~N~l~~l-~~---------~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp 333 (454)
T 1jl5_A 275 L------PQSLTFLDVSENIFSGL-SE---------LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LP 333 (454)
T ss_dssp C------CTTCCEEECCSSCCSEE-SC---------CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CC
T ss_pred c------cCcCCEEECcCCccCcc-cC---------cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cc
Confidence 2 36788888888877652 11 22578888888888774 221 12478888888888875 45
Q ss_pred cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCC
Q 047549 373 GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGN 417 (479)
Q Consensus 373 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 417 (479)
.. +++|++|++++|+++ .+|. .+++|+.+++++|...+
T Consensus 334 ~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 334 AL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred cc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCc
Confidence 43 477888888888888 4555 46777777777765544
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-32 Score=283.37 Aligned_cols=326 Identities=16% Similarity=0.143 Sum_probs=258.0
Q ss_pred CCCCCCCCCcc----ceeEEeC-----------------CCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCC
Q 047549 32 LNWSFSTDCCL----WEGIKCD-----------------SEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSF 90 (479)
Q Consensus 32 ~~w~~~~~~c~----w~~v~c~-----------------~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 90 (479)
..|.++.+||. |.++.|. ...+++.++++++.++...+..+..+++|++|++++|.+++
T Consensus 10 ~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~ 89 (597)
T 3oja_B 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 89 (597)
T ss_dssp -CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE
T ss_pred cCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC
Confidence 56776666663 6555443 12467888888888877666667889999999999999988
Q ss_pred cCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccc
Q 047549 91 LSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGV 166 (479)
Q Consensus 91 ~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 166 (479)
.++.. ++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..
T Consensus 90 ~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 166 (597)
T 3oja_B 90 IDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT- 166 (597)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-
T ss_pred CChHHhcCCCCCCEEECCCCcCCC--CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-
Confidence 76532 789999999999885 44556789999999999999998555555788999999999999988776654
Q ss_pred cccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCcc
Q 047549 167 VNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT 246 (479)
Q Consensus 167 ~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 246 (479)
+..+++|++|++++|.+++.. +..+++|+.|++++|.+. .+...+.|+.|++++|.+....+ .
T Consensus 167 -------~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~------~l~~~~~L~~L~ls~n~l~~~~~-~ 229 (597)
T 3oja_B 167 -------FQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSINVVRG-P 229 (597)
T ss_dssp -------TTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS------EEECCTTCSEEECCSSCCCEEEC-S
T ss_pred -------hhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc------cccCCchhheeeccCCccccccc-c
Confidence 566889999999999988652 566789999999999886 23456789999999999874432 2
Q ss_pred CcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCcccccc
Q 047549 247 LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITIS 326 (479)
Q Consensus 247 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 326 (479)
..++|+.|++++|.+++. ..+..+++|+.|++++|.++++++ ..+..+++|+.|++++|.+.+. +...
T Consensus 230 --~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~----- 297 (597)
T 3oja_B 230 --VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY--HPFVKMQRLERLYISNNRLVAL-NLYG----- 297 (597)
T ss_dssp --CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES--GGGTTCSSCCEEECTTSCCCEE-ECSS-----
T ss_pred --cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH--HHhcCccCCCEEECCCCCCCCC-Cccc-----
Confidence 236899999999999873 678889999999999999986543 5677889999999999988774 2222
Q ss_pred ccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccccc
Q 047549 327 SYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGE 394 (479)
Q Consensus 327 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 394 (479)
..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+. + +..+++|++|++++|++.+.
T Consensus 298 -~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 298 -QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred -ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 25789999999999998 6777888899999999999999854 3 66788999999999998754
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-32 Score=280.86 Aligned_cols=275 Identities=16% Similarity=0.193 Sum_probs=136.2
Q ss_pred CCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCE
Q 047549 75 LTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLED 150 (479)
Q Consensus 75 l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 150 (479)
+++++.+++++|.+..+++.. ++|++|++++|.+++ ..|..+..+++|++|++++|.+.+..|..|.++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC--CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 455666666666665554432 555555555555543 22334555555555555555555444444555555555
Q ss_pred EECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 151 ISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 151 L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
|++++|.+++..+.. |..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ ++ +..+++|+
T Consensus 128 L~L~~n~l~~l~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~ 195 (597)
T 3oja_B 128 LVLERNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLF 195 (597)
T ss_dssp EECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCS
T ss_pred EEeeCCCCCCCCHHH--------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhh
Confidence 555555555332221 2344555555555555555444455555555555555555442 21 23344555
Q ss_pred EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccC
Q 047549 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK 310 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~ 310 (479)
.|++++|.+++. ...++|+.|++++|.+ ..++... .++|+.|++++
T Consensus 196 ~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l------------------------~~~~~~~-----~~~L~~L~L~~ 241 (597)
T 3oja_B 196 HANVSYNLLSTL-----AIPIAVEELDASHNSI------------------------NVVRGPV-----NVELTILKLQH 241 (597)
T ss_dssp EEECCSSCCSEE-----ECCTTCSEEECCSSCC------------------------CEEECSC-----CSCCCEEECCS
T ss_pred hhhcccCccccc-----cCCchhheeeccCCcc------------------------ccccccc-----CCCCCEEECCC
Confidence 555555544321 2223444445544444 4332211 13444455544
Q ss_pred ccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCc
Q 047549 311 IFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390 (479)
Q Consensus 311 n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 390 (479)
|.+.+. ... ..+++|+.|++++|.+.+..|..|..+++|+.|+|++|.+.+ +|..+..+++|++|+|++|.
T Consensus 242 n~l~~~--~~l------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 242 NNLTDT--AWL------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp SCCCCC--GGG------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred CCCCCC--hhh------ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC
Confidence 444431 000 134555555665555555555555556666666666665553 34444555566666666665
Q ss_pred ccccCCccccCCccccc
Q 047549 391 ISGEFPKEFCGLPALAL 407 (479)
Q Consensus 391 l~~~~p~~~~~l~~L~~ 407 (479)
++ .+|..+..++.|+.
T Consensus 313 l~-~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 313 LL-HVERNQPQFDRLEN 328 (597)
T ss_dssp CC-CCGGGHHHHTTCSE
T ss_pred CC-ccCcccccCCCCCE
Confidence 55 34444444555544
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.3e-32 Score=262.40 Aligned_cols=307 Identities=19% Similarity=0.251 Sum_probs=217.9
Q ss_pred CCCCEEEcCCcccccCCCCCCc-CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSG-LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNI 174 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 174 (479)
+++++|++++|.++ .+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|.. +
T Consensus 45 ~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~ 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--------F 113 (390)
T ss_dssp CCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--------T
T ss_pred CCceEEEecCCchh---hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH--------h
Confidence 67888888888877 46654 567888888888888887666667888888888888888877665553 4
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++. .+..+++|+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 189 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCS
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccc
Confidence 56778888888888887555555677888888888888876 44444677778888888888877743 245667788
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCcc
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~ 334 (479)
.+++++|.+++. ...++|+.|++++|.+..++. ...++|+.|++++|.+.+. ... ..+++|+
T Consensus 190 ~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~--~~l------~~l~~L~ 251 (390)
T 3o6n_A 190 HANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDT--AWL------LNYPGLV 251 (390)
T ss_dssp EEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCC--GGG------GGCTTCS
T ss_pred eeeccccccccc-----CCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCccc--HHH------cCCCCcc
Confidence 888888777653 234577788888877775543 2246777777777776653 111 2566777
Q ss_pred EEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccccccc
Q 047549 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA 414 (479)
Q Consensus 335 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~ 414 (479)
+|++++|++++..|..+..+++|++|++++|++.+ +|..+..+++|++|++++|+++ .+|..+..++.|+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~-------- 321 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-------- 321 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS--------
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCC--------
Confidence 77777777776666777777777777777777763 4555566777777777777776 4454455555553
Q ss_pred CCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 415 DGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.|++++|+++ .+| +..+++|+.|++++|+++
T Consensus 322 -------------------------------~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 322 -------------------------------NLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp -------------------------------EEECCSSCCC-CCC--CCTTCCCSEEECCSSCEE
T ss_pred -------------------------------EEECCCCccc-eeC--chhhccCCEEEcCCCCcc
Confidence 3788888887 344 678899999999999873
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8.3e-31 Score=249.71 Aligned_cols=295 Identities=19% Similarity=0.226 Sum_probs=198.2
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT 202 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 202 (479)
+++.++++++.+. .+|..+. +.+++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGD--------FKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTT--------TTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhh--------hccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 4555555555555 4444332 45666666666655443332 34556666666666666655566666677
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc--cChhhhhccCCCCEE
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE--QISPTILALVSVSYL 280 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L 280 (479)
+|++|++++|.+. .++... .++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|
T Consensus 101 ~L~~L~Ls~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TCCEEECCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCEEECCCCcCC-ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 7777777777665 454322 2577777777777775555566777777777777777753 456667777888888
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEE
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVL 360 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 360 (479)
++++|.++.++... .++|+.|++++|.+.+..+..+. .+++|++|++++|++++..+..+..+++|++|
T Consensus 177 ~l~~n~l~~l~~~~-----~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 177 RIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLK------GLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp ECCSSCCCSCCSSC-----CTTCSEEECTTSCCCEECTGGGT------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred ECCCCccccCCccc-----cccCCEEECCCCcCCccCHHHhc------CCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 88888877665422 26788888888877765444332 56788889998888887777788888899999
Q ss_pred eCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccc
Q 047549 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKL 440 (479)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l 440 (479)
++++|++. .+|..+..+++|++|++++|++++..+..|+....... ...+
T Consensus 246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~-------------------~~~l---------- 295 (330)
T 1xku_A 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK-------------------KASY---------- 295 (330)
T ss_dssp ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT-------------------SCCC----------
T ss_pred ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccc-------------------cccc----------
Confidence 99999888 67777888889999999999988776666654421100 0000
Q ss_pred cCCCCeEEccCCcccc--cCChhhhcccccCeeeCCCCC
Q 047549 441 FSLPPAIYLRNNGLNG--SIPIEIGNVMFLHVLDLSLNN 477 (479)
Q Consensus 441 ~~~~~~l~ls~n~l~~--~~~~~~~~~~~L~~L~ls~N~ 477 (479)
..+++++|.+.. ..|..+..+.+++.+++++|+
T Consensus 296 ----~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 ----SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ----SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ----cceEeecCcccccccCccccccccceeEEEecccC
Confidence 247888888763 456788899999999999986
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3e-31 Score=252.92 Aligned_cols=294 Identities=19% Similarity=0.212 Sum_probs=197.3
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT 202 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 202 (479)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDD--------FKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTT--------TTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhH--------hhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 4566666666655 4454442 45666666666665544433 34566666667766666666666666677
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc--cChhhhhccCCCCEE
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE--QISPTILALVSVSYL 280 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L 280 (479)
+|++|++++|.+. .++...+ ++|++|++++|.+++..+..+..+++|+.|++++|.++. ..+..+..+ +|++|
T Consensus 103 ~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 103 KLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 7777777777665 4554222 667777777777765545556677777777777777743 445556555 77777
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEE
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVL 360 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 360 (479)
++++|.++.++... .++|+.|++++|.+.+..+..+. .+++|++|++++|++++..+..+..+++|++|
T Consensus 178 ~l~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~l~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 178 RISEAKLTGIPKDL-----PETLNELHLDHNKIQAIELEDLL------RYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246 (332)
T ss_dssp BCCSSBCSSCCSSS-----CSSCSCCBCCSSCCCCCCTTSST------TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEE
T ss_pred ECcCCCCCccCccc-----cCCCCEEECCCCcCCccCHHHhc------CCCCCCEEECCCCcCCcCChhHhhCCCCCCEE
Confidence 77777777665422 25777778877777765544333 56788888888888887777788888899999
Q ss_pred eCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccc
Q 047549 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKL 440 (479)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l 440 (479)
++++|++. .+|..+..+++|++|++++|++++..+..|+....... ...+
T Consensus 247 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~-------------------~~~l---------- 296 (332)
T 2ft3_A 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK-------------------RAYY---------- 296 (332)
T ss_dssp ECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS-------------------SCCB----------
T ss_pred ECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc-------------------cccc----------
Confidence 99999888 67777888899999999999998777776665421100 0000
Q ss_pred cCCCCeEEccCCccc--ccCChhhhcccccCeeeCCCCC
Q 047549 441 FSLPPAIYLRNNGLN--GSIPIEIGNVMFLHVLDLSLNN 477 (479)
Q Consensus 441 ~~~~~~l~ls~n~l~--~~~~~~~~~~~~L~~L~ls~N~ 477 (479)
..+++++|.+. +..|..+..+++|+.+++++|+
T Consensus 297 ----~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 297 ----NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ----SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ----cceEeecCcccccccCcccccccchhhhhhccccc
Confidence 23788888876 5677889999999999999885
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=3.8e-30 Score=245.12 Aligned_cols=286 Identities=22% Similarity=0.271 Sum_probs=167.2
Q ss_pred CCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCC
Q 047549 78 LCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVN 156 (479)
Q Consensus 78 L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (479)
++.++++++.++.++... +.+++|++++|.+++ ..+..+.++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CeEEEecCCCccccCccCCCCCeEEECCCCcCCE--eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 444444444444443332 455666666666553 22235677777788888777777666777777778888888777
Q ss_pred cccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcc-ccCccccCCCCCCcEEEcc
Q 047549 157 QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG-DLSAYNFSTLHNLHTIDLG 235 (479)
Q Consensus 157 ~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~ 235 (479)
.++. +|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+.. .+....+..+++|++|+++
T Consensus 111 ~l~~-l~~~~----------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 111 QLKE-LPEKM----------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CCSB-CCSSC----------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred cCCc-cChhh----------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 7663 33221 2577788888887777666677777888888888777752 1233356677777777777
Q ss_pred CCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc
Q 047549 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
+|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++.++. ..+..+
T Consensus 180 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l--------------- 239 (330)
T 1xku_A 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLANT--------------- 239 (330)
T ss_dssp SSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT--TTGGGS---------------
T ss_pred CCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh--hhccCC---------------
Confidence 77776 3444332 677777777777777666677777777777777776664432 123333
Q ss_pred cCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCC------CCCCcEEEccCC
Q 047549 316 AIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGN------MPNLFYIDLSYN 389 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~N 389 (479)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.|++++|
T Consensus 240 ---------------~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 240 ---------------PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp ---------------TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred ---------------CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence 34444444444444 34444444455555555555554333333322 244455555555
Q ss_pred cccc--cCCccccCCcccccccccc
Q 047549 390 SISG--EFPKEFCGLPALALQEAKN 412 (479)
Q Consensus 390 ~l~~--~~p~~~~~l~~L~~l~~~~ 412 (479)
++.. ..|..|..+..++.+++++
T Consensus 304 ~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 304 PVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp SSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred cccccccCccccccccceeEEEecc
Confidence 5432 3334455555555554443
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=5.9e-32 Score=256.69 Aligned_cols=266 Identities=18% Similarity=0.210 Sum_probs=187.4
Q ss_pred cccccChhhHHHHHHhHhcCCCCC----CCC----CCCCCCccceeEEeC---------CCCCEEEEECCCCCccccccc
Q 047549 8 LDQACNQIDQETLLSLNFNASNPP----LNW----SFSTDCCLWEGIKCD---------SEAQVTHLWLPDRGLRGSIYP 70 (479)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~----~~w----~~~~~~c~w~~v~c~---------~~~~l~~L~l~~~~l~~~~~~ 70 (479)
-+.+...+++.||.+||..+..+. ..| ....++|.|.|+.|. ..++++.|++++++++ .+|+
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 344466689999999999875433 557 346789999999995 3478999999999998 6788
Q ss_pred cccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCC---
Q 047549 71 FTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSA--- 144 (479)
Q Consensus 71 ~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--- 144 (479)
.+..+++|++|++++|.++.++..+ ++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC---CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc---cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 8888999999999999988554433 67778888887777 56777777777888888777766677766543
Q ss_pred ------CCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcccc
Q 047549 145 ------AASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDL 218 (479)
Q Consensus 145 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 218 (479)
+++|++|++++|.++ .+|.. +..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~-~lp~~--------l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~ 245 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR-SLPAS--------IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY 245 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC-CCCGG--------GGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC
T ss_pred hhhhccCCCCCEEECcCCCcC-cchHh--------hcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh
Confidence 667777777776666 44443 3445667777777776664 4445666677777777776666555
Q ss_pred CccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 219 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++++.+++..+.+.
T Consensus 246 p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 246 PP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred HH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 53 5666667777777776666666666666677777777776666666666666666666666655443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.4e-30 Score=246.65 Aligned_cols=287 Identities=21% Similarity=0.232 Sum_probs=170.0
Q ss_pred CCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCC
Q 047549 77 HLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPV 155 (479)
Q Consensus 77 ~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 155 (479)
+++.++++++.++.++... +.|++|++++|.+++ ..|..+.++++|++|++++|.+++..|..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE--LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc--cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4566666666665554433 566666666666653 2344677777777777777777766667777777777777777
Q ss_pred CcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcc-ccCccccCCCCCCcEEEc
Q 047549 156 NQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG-DLSAYNFSTLHNLHTIDL 234 (479)
Q Consensus 156 n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l 234 (479)
|.++. +|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+.. .+....+..+ +|++|++
T Consensus 112 n~l~~-l~~~~----------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 112 NHLVE-IPPNL----------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp SCCCS-CCSSC----------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CcCCc-cCccc----------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 77663 33221 1567777777777776555566777777777777777641 1222344445 6677777
Q ss_pred cCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcccc
Q 047549 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFH 314 (479)
Q Consensus 235 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~ 314 (479)
++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++.++. ..+.
T Consensus 180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~---------------- 238 (332)
T 2ft3_A 180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN--GSLS---------------- 238 (332)
T ss_dssp CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT--TGGG----------------
T ss_pred cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh--hHhh----------------
Confidence 7776663 444332 566666666666666555556666666666666665554332 1122
Q ss_pred ccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCC------CCCCcEEEccC
Q 047549 315 EAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGN------MPNLFYIDLSY 388 (479)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~ 388 (479)
.+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|++++
T Consensus 239 --------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 239 --------------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp --------------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred --------------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 3445556666666555 45555666666666666666666444444433 24566666666
Q ss_pred Cccc--ccCCccccCCccccccccccc
Q 047549 389 NSIS--GEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 389 N~l~--~~~p~~~~~l~~L~~l~~~~~ 413 (479)
|++. +..|..|..++.|+.++++++
T Consensus 304 N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 304 NPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CcccccccCcccccccchhhhhhcccc
Confidence 6665 445556666666666655543
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.1e-31 Score=250.28 Aligned_cols=247 Identities=23% Similarity=0.315 Sum_probs=161.6
Q ss_pred CCCEEEccCCcCcc--ccchhhhcCCCCCeeeccC-CcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 179 NLKSLKLHTNSLSG--FLPQFLMNCTNLITLNLRI-NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 179 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|. .+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45555555555555 4555555566666666653 555544443 4555566666666666665555555566666666
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCC-CCCCccccccCCC-CCcEEEccCccccccCCCCccccccccccCCc
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLS-NITGAIGILMGCK-NLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L 333 (479)
|++++|.+++..|..+..+++|++|++++|.++ .++ ..+..++ .|+.|++++|.+.+.+|..+. .+. |
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~~L~~L~L~~N~l~~~~~~~~~------~l~-L 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMTISRNRLTGKIPPTFA------NLN-L 199 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC---GGGGCCCTTCCEEECCSSEEEEECCGGGG------GCC-C
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC---HHHhhhhhcCcEEECcCCeeeccCChHHh------CCc-c
Confidence 666666665555555666666666666666554 222 2334444 666666666666655554433 233 8
Q ss_pred cEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccc
Q 047549 334 VVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 334 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
++|++++|++++..|..+..+++|+.|++++|++.+.+|. +..+++|++|++++|++++.+|..|..++.|+.
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~------ 272 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS------ 272 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE------
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE------
Confidence 8888888888877777788888888888888888755554 677788888888888888778887777777754
Q ss_pred cCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCC
Q 047549 414 ADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNN 477 (479)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~ 477 (479)
|++++|+++|.+|.. .++++|+.|++++|+
T Consensus 273 ---------------------------------L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 273 ---------------------------------LNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ---------------------------------EECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ---------------------------------EECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 677778888777776 778888888888876
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.6e-33 Score=279.75 Aligned_cols=355 Identities=16% Similarity=0.102 Sum_probs=260.1
Q ss_pred CCEEEEECCCCCcccccccc-ccCCCCCCeeecCCCcCCCc--------CCCCCCCCEEEcCCcccccCCCCCCc-CCCC
Q 047549 52 AQVTHLWLPDRGLRGSIYPF-TGKLTHLCHLNLSHNHLSFL--------SPSVPFLSILDFSHNYFRGHCQLPSG-LGNF 121 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~--------~~~~~~L~~L~L~~n~l~~~~~l~~~-~~~l 121 (479)
+++++|++++++++...... +..+++|++|++++|.++.. ....++|++|++++|.+.+ ..+.. ...+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD--VGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH--HHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh--HHHHHHHHHH
Confidence 46899999999987654443 67899999999999998743 1223899999999998864 11111 2233
Q ss_pred C----CCcEEEcccccccc----CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc
Q 047549 122 S----KLQTFRAGFSYLSG----SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193 (479)
Q Consensus 122 ~----~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~ 193 (479)
+ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.... ....++|++|++++|.+++.
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH---TSTTCCCCEEECTTSCCBGG
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH---hcCCCcceEEECCCCCCCHH
Confidence 3 79999999999884 5578889999999999999998765444332210 23356899999999999864
Q ss_pred ----cchhhhcCCCCCeeeccCCcCccccCcccc-----CCCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccC
Q 047549 194 ----LPQFLMNCTNLITLNLRINNFRGDLSAYNF-----STLHNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRLSG 260 (479)
Q Consensus 194 ----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~ 260 (479)
++..+..+++|++|++++|.+.+.... .+ ...++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVR-VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHH-HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHH-HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 356677789999999999998632111 22 2366999999999998853 466777889999999999
Q ss_pred CcccccChhh-----hhccCCCCEEEccCCCCCCCCC--ccccccCCCCCcEEEccCccccccCCCCccccccccccCCc
Q 047549 261 NKIEEQISPT-----ILALVSVSYLSINNNNLSNITG--AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333 (479)
Q Consensus 261 n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L 333 (479)
|.++...... +..+++|++|++++|.++.... ....+..+++|+.|++++|.+.+..+....... ....++|
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~~L 315 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-LEPGCQL 315 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-TSTTCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh-ccCCccc
Confidence 9987643222 2357899999999998875211 124466689999999999987654322111100 0123589
Q ss_pred cEEEeeCCcceec----CchhhcCCCCCCEEeCCCCccccccCcccC----C-CCCCcEEEccCCcccc----cCCcccc
Q 047549 334 VVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSNQITGPIPGWLG----N-MPNLFYIDLSYNSISG----EFPKEFC 400 (479)
Q Consensus 334 ~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~L~~N~l~~----~~p~~~~ 400 (479)
++|++++|.+++. ++..+..+++|++|++++|++.+..+..+. . .++|++|++++|++++ .+|..+.
T Consensus 316 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence 9999999999865 466778889999999999999865444333 2 6799999999999986 6777888
Q ss_pred CCccccccccccc
Q 047549 401 GLPALALQEAKNR 413 (479)
Q Consensus 401 ~l~~L~~l~~~~~ 413 (479)
.++.|+.+++++|
T Consensus 396 ~~~~L~~L~l~~N 408 (461)
T 1z7x_W 396 ANHSLRELDLSNN 408 (461)
T ss_dssp HCCCCCEEECCSS
T ss_pred hCCCccEEECCCC
Confidence 8888877555443
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.9e-33 Score=277.20 Aligned_cols=316 Identities=17% Similarity=0.132 Sum_probs=174.6
Q ss_pred CCCCeeecCCCcCCCcCC-----CCCCCCEEEcCCcccccC--CCCCCcCCCCCCCcEEEccccccccCCCccCC-CCC-
Q 047549 76 THLCHLNLSHNHLSFLSP-----SVPFLSILDFSHNYFRGH--CQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVS-AAA- 146 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~-----~~~~L~~L~L~~n~l~~~--~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~- 146 (479)
++|++|++++++++.... ..++|++|++++|.++.. ..++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 457778887777764421 226777777777776521 02344566677777777777776543332221 233
Q ss_pred ---CCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc-----CCCCCeeeccCCcCcccc
Q 047549 147 ---SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN-----CTNLITLNLRINNFRGDL 218 (479)
Q Consensus 147 ---~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~ 218 (479)
+|++|++++|.++......+.. .+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSS----TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHH----HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCCceeEEEccCCCCCHHHHHHHHH----HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 5777777777666321111111 1445677777777777766443333322 346777777777665321
Q ss_pred C---ccccCCCCCCcEEEccCCcccccCCccCc-----CCCCCCEEEccCCccccc----ChhhhhccCCCCEEEccCCC
Q 047549 219 S---AYNFSTLHNLHTIDLGNNNFTGSFPLTLT-----SCMFLTAIRLSGNKIEEQ----ISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 219 ~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~ 286 (479)
. ...+..+++|++|++++|.+++..+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 0 12344566777777777776543322222 245677777777776653 34555666777777777776
Q ss_pred CCCCCC--cc-ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcC-----CCCCC
Q 047549 287 LSNITG--AI-GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK-----LKKLQ 358 (479)
Q Consensus 287 l~~~~~--~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~ 358 (479)
+++... .. .....+++|+.|++++|.++......... ....+++|++|++++|.+++..+..+.. .++|+
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 653210 00 11124566777777776655421100000 0013566777777777665433322221 25677
Q ss_pred EEeCCCCccccc----cCcccCCCCCCcEEEccCCcccccCCc
Q 047549 359 VLDLGSNQITGP----IPGWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 359 ~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
+|++++|.+++. ++..+..+++|++|++++|++++..+.
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 777777776643 344555666777777777766654443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=236.98 Aligned_cols=282 Identities=18% Similarity=0.161 Sum_probs=191.0
Q ss_pred CCCCCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccCCCccCCCCCCCCEE
Q 047549 74 KLTHLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDI 151 (479)
Q Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 151 (479)
.|+.....+++++.++.++... ++|++|++++|.+++ ++. .+.++++|++|++++|.+++..+..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4455556788888888776654 577888888877763 333 67777777777777777776666667777777777
Q ss_pred ECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc-hhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 152 SLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP-QFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 152 ~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
++++|.+++..+.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|...+.++...+..+++|+
T Consensus 106 ~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 106 DLSYNYLSNLSSSW--------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp ECCSSCCSSCCHHH--------HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ECCCCcCCcCCHhH--------hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 77777776433322 3456777777777777774433 35666777777777777422244444566677777
Q ss_pred EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccC
Q 047549 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK 310 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~ 310 (479)
+|++++|.+++..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++.+.
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~------------------ 239 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF------------------ 239 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC------------------
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc------------------
Confidence 77777777776666667777777777777777655444444556677777777776664331
Q ss_pred ccccccCCCCccccccccccCCccEEEeeCCccee----cCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEc
Q 047549 311 IFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKG----QIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDL 386 (479)
Q Consensus 311 n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 386 (479)
..... ......++.++++++.+.+ .+|..+..+++|++|++++|+++...+..|..+++|++|++
T Consensus 240 --------~~l~~---~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 240 --------SELST---GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp --------C---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred --------ccccc---ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEe
Confidence 11000 0123467777887777765 36778899999999999999999544444689999999999
Q ss_pred cCCcccccC
Q 047549 387 SYNSISGEF 395 (479)
Q Consensus 387 ~~N~l~~~~ 395 (479)
++|++++..
T Consensus 309 ~~N~~~~~~ 317 (353)
T 2z80_A 309 HTNPWDCSC 317 (353)
T ss_dssp CSSCBCCCH
T ss_pred eCCCccCcC
Confidence 999988543
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.9e-28 Score=249.81 Aligned_cols=288 Identities=19% Similarity=0.208 Sum_probs=177.9
Q ss_pred CCCCCCCCCccceeEEeC-------CCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcC
Q 047549 32 LNWSFSTDCCLWEGIKCD-------SEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFS 104 (479)
Q Consensus 32 ~~w~~~~~~c~w~~v~c~-------~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~ 104 (479)
..|..+.++|.|.+..|. ....++.|++++++++ .+|..+. ++|++|++++|.++.++...++|++|+++
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls 89 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVS 89 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCCCCTTCCEEEEC
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcC
Confidence 446667788998653221 1235889999999988 5676665 78999999999988877766888888888
Q ss_pred CcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEE
Q 047549 105 HNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLK 184 (479)
Q Consensus 105 ~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~ 184 (479)
+|.++ .+|. .+++|++|++++|.++ .+|. .+++|+.|++++|.++. +|.. +++|++|+
T Consensus 90 ~N~l~---~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~-----------l~~L~~L~ 147 (622)
T 3g06_A 90 GNQLT---SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL-----------PPGLQELS 147 (622)
T ss_dssp SCCCS---CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC-----------CTTCCEEE
T ss_pred CCcCC---cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC-----------CCCCCEEE
Confidence 88887 4665 5678888888888877 3444 45677888887777664 2221 36677777
Q ss_pred ccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccc
Q 047549 185 LHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIE 264 (479)
Q Consensus 185 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (479)
+++|.+++. |. .+++|+.|++++|.++ .++ ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++
T Consensus 148 Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 148 VSDNQLASL-PA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT 214 (622)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc
Confidence 777777642 32 2356666777776665 344 235666666666666652 3321 345566666666555
Q ss_pred ccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcce
Q 047549 265 EQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIK 344 (479)
Q Consensus 265 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 344 (479)
.. |. .+++|+.|++++|.++.++ . .+++|++|++++|+++
T Consensus 215 ~l-~~---~~~~L~~L~Ls~N~L~~lp------~------------------------------~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 215 SL-PA---LPSGLKELIVSGNRLTSLP------V------------------------------LPSELKELMVSGNRLT 254 (622)
T ss_dssp SC-CC---CCTTCCEEECCSSCCSCCC------C------------------------------CCTTCCEEECCSSCCS
T ss_pred cc-CC---CCCCCCEEEccCCccCcCC------C------------------------------CCCcCcEEECCCCCCC
Confidence 42 21 1245555555555555433 1 2345555555555555
Q ss_pred ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCC
Q 047549 345 GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402 (479)
Q Consensus 345 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 402 (479)
.+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 255 -~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 255 -SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp -CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred -cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 2333 3455666666666665 445555566666666666666665555544433
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4e-28 Score=233.34 Aligned_cols=288 Identities=15% Similarity=0.166 Sum_probs=210.0
Q ss_pred CCCCCCCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcc
Q 047549 32 LNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNY 107 (479)
Q Consensus 32 ~~w~~~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~ 107 (479)
..|......|.|.++ | +.++++++ .+|..+. ++|++|++++|++++.++. .++|++|++++|.
T Consensus 21 ~~~~~~~~~C~~~~~-c---------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-C---------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp ------CCEECTTSE-E---------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cCCCccCCCCCCCeE-e---------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 445556777888765 4 45666776 4566554 5899999999999987663 3899999999999
Q ss_pred cccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccC
Q 047549 108 FRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHT 187 (479)
Q Consensus 108 l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~ 187 (479)
+++ ..|..+.++++|++|++++|.+++..+..+.++++|++|++++|.++...+.. .+..+++|++|++++
T Consensus 88 l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-------~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 88 INT--IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS-------LFSHLTKLQILRVGN 158 (353)
T ss_dssp CCE--ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSC-------SCTTCTTCCEEEEEE
T ss_pred cCc--cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchh-------hhccCCCCcEEECCC
Confidence 985 44667999999999999999999544445899999999999999988543312 166789999999999
Q ss_pred C-cCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 188 N-SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 188 n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
| .++...+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++.
T Consensus 159 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred CccccccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 9 5776677889999999999999999985444 4788999999999999998743333345689999999999999886
Q ss_pred Chhhhh---ccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcc
Q 047549 267 ISPTIL---ALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 267 ~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.+..+. ....++.+++.++.+.+. .+. .+|... ..+++|++|++++|++
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~---------------------~l~-~l~~~l------~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDE---------------------SLF-QVMKLL------NQISGLLELEFSRNQL 289 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHH---------------------HHH-HHHHHH------HTCTTCCEEECCSSCC
T ss_pred cccccccccccchhhccccccccccCc---------------------chh-hhHHHH------hcccCCCEEECCCCCC
Confidence 544332 234455555554444311 000 011111 2567888888888888
Q ss_pred eecCchh-hcCCCCCCEEeCCCCcccccc
Q 047549 344 KGQIPTW-LGKLKKLQVLDLGSNQITGPI 371 (479)
Q Consensus 344 ~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 371 (479)
+ .+|.. |..+++|++|++++|++....
T Consensus 290 ~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 290 K-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred C-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 8 44444 588889999999999887543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.1e-28 Score=229.41 Aligned_cols=286 Identities=19% Similarity=0.165 Sum_probs=196.3
Q ss_pred ccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCC
Q 047549 41 CLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPS 116 (479)
Q Consensus 41 c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~ 116 (479)
|.|.++.|.. ++++ .+|..+ .++|++|++++|+++.+++.. ++|++|++++|.++.....+.
T Consensus 7 C~~~~l~c~~-----------~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 7 CSGTEIRCNS-----------KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp EETTEEECCS-----------SCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred eCCCEEEcCC-----------CCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 6787777753 2333 233333 257777777777777665432 677788887777763212345
Q ss_pred cCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccch
Q 047549 117 GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196 (479)
Q Consensus 117 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~ 196 (479)
.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+.. .+..+++|++|++++|.+++..+.
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS-------VFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTT-------TTTTCTTCCEEECTTSCCEECSTT
T ss_pred ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccch-------hhhhccCCCEEECCCCcCCccchh
Confidence 5566788888888888877 56666778888888888888877554311 155678888888888888877777
Q ss_pred hhhcCCCCCeeeccCCcCccc-cCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccC
Q 047549 197 FLMNCTNLITLNLRINNFRGD-LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALV 275 (479)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 275 (479)
.+..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..++
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hcccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 788888888888888888742 34 3677888888888888888877777888888888888888888887776778888
Q ss_pred CCCEEEccCCCCCCCCCccccccCC-CCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCC
Q 047549 276 SVSYLSINNNNLSNITGAIGILMGC-KNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354 (479)
Q Consensus 276 ~L~~L~L~~n~l~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 354 (479)
+|++|++++|.+++... ..+..+ ++|+.|++++|.+.+........ ..+...+.+.+..+.+....|..+.+.
T Consensus 224 ~L~~L~L~~N~l~~~~~--~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~----~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKK--QELQHFPSSLAFLNLTQNDFACTCEHQSFL----QWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp TCCEEECTTSCCCBCSS--SSCCCCCTTCCEEECTTCCEECSGGGHHHH----HHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred cCCEeECCCCCCcccCH--HHHHhhhccCCEEEccCCCeecccChHHHH----HHHHhhhhhhccccccccCCchhhCCc
Confidence 88888888888875543 345555 48888888888877643211100 112233344445555555566666554
Q ss_pred C
Q 047549 355 K 355 (479)
Q Consensus 355 ~ 355 (479)
+
T Consensus 298 ~ 298 (306)
T 2z66_A 298 P 298 (306)
T ss_dssp B
T ss_pred e
Confidence 3
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=228.19 Aligned_cols=246 Identities=21% Similarity=0.182 Sum_probs=150.8
Q ss_pred cEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC
Q 047549 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL 204 (479)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 204 (479)
+.++.++..++ .+|..+. ++++.|++++|.++...+.. |..+++|++|++++|.+++..+..|.++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~--------~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNS--------FKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTT--------TSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHH--------hhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 34444444444 3443332 34555555555544433332 3344555555555555555445555555666
Q ss_pred CeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccC-CcccccChhhhhccCCCCEEEcc
Q 047549 205 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSG-NKIEEQISPTILALVSVSYLSIN 283 (479)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~ 283 (479)
++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++ +.+....+..|..+++|++|+++
T Consensus 115 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 66666666555 44433455566666666666666544444555666666666666 33433344456666666777777
Q ss_pred CCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCC
Q 047549 284 NNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLG 363 (479)
Q Consensus 284 ~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 363 (479)
+|.++.++. +..+++|+.|++++|.+.+..+..+. .+++|+.|++++|++++..+..|..+++|+.|+|+
T Consensus 194 ~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 194 MCNLREIPN----LTPLIKLDELDLSGNHLSAIRPGSFQ------GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp TSCCSSCCC----CTTCSSCCEEECTTSCCCEECTTTTT------TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred CCcCccccc----cCCCcccCEEECCCCccCccChhhhc------cCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 666665542 55666777777777776665554433 56778888888888887777778888888888888
Q ss_pred CCccccccCcccCCCCCCcEEEccCCccc
Q 047549 364 SNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 364 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
+|++++..+..|..+++|+.|+|++|++.
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88888666677778888888888888765
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.6e-27 Score=224.51 Aligned_cols=197 Identities=20% Similarity=0.267 Sum_probs=87.5
Q ss_pred CeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccC--CCccCCCCCCCCEEECC
Q 047549 79 CHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGS--IPDDVSAAASLEDISLP 154 (479)
Q Consensus 79 ~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~ 154 (479)
+.++++++.++.++... ++|++|++++|.++ .+|. .+.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45566666665555433 45555555555554 3333 244555555555555554411 12333344555555555
Q ss_pred CCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc-hhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEE
Q 047549 155 VNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP-QFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 233 (479)
Q Consensus 155 ~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 233 (479)
+|.+... +.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus 87 ~n~i~~l-~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 156 (306)
T 2z66_A 87 FNGVITM-SSN--------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLK 156 (306)
T ss_dssp SCSEEEE-EEE--------EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEE
T ss_pred CCccccC-hhh--------cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEE
Confidence 5544421 111 2234444555555444443322 234444444444444444432222 2344444444444
Q ss_pred ccCCcccc-cCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 234 LGNNNFTG-SFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 234 l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 44444433 23344444444444444444444433334444444444444444433
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2e-26 Score=228.92 Aligned_cols=247 Identities=19% Similarity=0.189 Sum_probs=141.1
Q ss_pred CCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 98 LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 98 L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
.+.++.++..++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+.. |.++
T Consensus 56 ~~~v~c~~~~l~---~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--------~~~l 122 (452)
T 3zyi_A 56 FSKVVCTRRGLS---EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--------FNGL 122 (452)
T ss_dssp SCEEECCSSCCS---SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--------TTTC
T ss_pred CcEEEECCCCcC---ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh--------ccCc
Confidence 455666666665 4555443 46666677666666555666666666666666666665544433 3445
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCC-cccccCCccCcCCCCCCEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN-NFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L 256 (479)
++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++| .+....+..+..+++|++|
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 66666666666666554455555666666666666555 444444555555555555553 2222222234444555555
Q ss_pred EccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEE
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVL 336 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L 336 (479)
++++|.+++ ++ .+..+++|+.|++++|.+.+..+..+. .+++|++|
T Consensus 202 ~L~~n~l~~------------------------~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~L 247 (452)
T 3zyi_A 202 NLGMCNIKD------------------------MP----NLTPLVGLEELEMSGNHFPEIRPGSFH------GLSSLKKL 247 (452)
T ss_dssp ECTTSCCSS------------------------CC----CCTTCTTCCEEECTTSCCSEECGGGGT------TCTTCCEE
T ss_pred ECCCCcccc------------------------cc----cccccccccEEECcCCcCcccCccccc------CccCCCEE
Confidence 555554443 32 133444555555555555443333222 45566777
Q ss_pred EeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 337 GIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 337 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.
T Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777766666666677777777777777776555566666777777777777654
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.8e-27 Score=218.27 Aligned_cols=223 Identities=20% Similarity=0.182 Sum_probs=107.9
Q ss_pred EEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccccc
Q 047549 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYL 134 (479)
Q Consensus 55 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~ 134 (479)
+.++.++.+++. +|..+ .++|++|++++|.+++.++ ..+..+++|++|++++|.+
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~----------------------~~~~~~~~L~~L~l~~n~l 68 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPA----------------------ASFRACRNLTILWLHSNVL 68 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECT----------------------TTTTTCTTCCEEECCSSCC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCH----------------------HHcccCCCCCEEECCCCcc
Confidence 455555555543 23322 3456666666665554433 2344445555555555555
Q ss_pred ccCCCccCCCCCCCCEEECCCCc-ccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc
Q 047549 135 SGSIPDDVSAAASLEDISLPVNQ-LSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN 213 (479)
Q Consensus 135 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 213 (479)
.+..+..+.++++|++|++++|. +....+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 69 ~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT--------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSCTTCCCCCTTT--------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ceeCHhhcCCccCCCEEeCCCCCCccccCHHH--------hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc
Confidence 44444445555555555555554 33322222 2334455555555555554444445555555555555555
Q ss_pred CccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCc
Q 047549 214 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGA 293 (479)
Q Consensus 214 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 293 (479)
+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++++.
T Consensus 141 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 218 (285)
T 1ozn_A 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT- 218 (285)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-
T ss_pred cc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-
Confidence 54 3333334455555555555555553333344555555555555555555445555555555555555555543322
Q ss_pred cccccCCCCCcEEEccCccc
Q 047549 294 IGILMGCKNLRMLLLCKIFF 313 (479)
Q Consensus 294 ~~~l~~~~~L~~L~l~~n~~ 313 (479)
..+..+++|+.|++++|.+
T Consensus 219 -~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 219 -EALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp -HHHTTCTTCCEEECCSSCE
T ss_pred -HHcccCcccCEEeccCCCc
Confidence 2233444444444444443
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.2e-26 Score=225.98 Aligned_cols=246 Identities=21% Similarity=0.202 Sum_probs=150.6
Q ss_pred CCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCC
Q 047549 78 LCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVN 156 (479)
Q Consensus 78 L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (479)
.+.++.++..++.++... +++++|++++|.+++ ..|..+.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM--IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCce--ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 455666666666555444 466666666666654 33456667777777777777776666666677777777777777
Q ss_pred cccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccC
Q 047549 157 QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236 (479)
Q Consensus 157 ~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 236 (479)
.++...+.. +..+++|++|++++|.++...+..+..+++|++|++++|...+.++...+..+++|++|++++
T Consensus 134 ~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 134 WLTVIPSGA--------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CCSBCCTTT--------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCccChhh--------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 666444332 445667777777777776555556667777777777764433355555566677777777777
Q ss_pred CcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcccccc
Q 047549 237 NNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEA 316 (479)
Q Consensus 237 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 316 (479)
|.+++ +| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|+++.++. ..+..+++|+.|++++|.+.+.
T Consensus 206 n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 206 CNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER--NAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCSCC
T ss_pred Ccccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH--HHhcCCCCCCEEECCCCcCCcc
Confidence 77663 33 35666677777777777776666667777777777777776664432 2344555555555555555433
Q ss_pred CCCCccccccccccCCccEEEeeCCcc
Q 047549 317 IPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.+..+. .+++|+.|++++|.+
T Consensus 282 ~~~~~~------~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 282 PHDLFT------PLRYLVELHLHHNPW 302 (452)
T ss_dssp CTTSST------TCTTCCEEECCSSCE
T ss_pred ChHHhc------cccCCCEEEccCCCc
Confidence 322221 344555555555544
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.3e-26 Score=214.19 Aligned_cols=216 Identities=21% Similarity=0.209 Sum_probs=107.5
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc-CccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN-FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
.+++|++|++++|.+++..+..+..+++|++|++++|. +. .++...+..+++|++|++++|.+++..+..+..+++|+
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 34445555555555544444445555555555555554 33 33223455555555555555555544455555555566
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCcc
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~ 334 (479)
+|++++|.+++..+..+..+++|++|++++|+++.++. ..+..+++|+.|++++|.+.+..+..+. .+++|+
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~ 204 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFR------DLGRLM 204 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTT------TCTTCC
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCCcccccCHhHcc------Cccccc
Confidence 66666655555444445555556666666555554332 1233344444444444444433333222 345666
Q ss_pred EEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccC
Q 047549 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 335 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
+|++++|++++..+..+..+++|++|++++|.+...-+.. .....++.+..+.+.+....|+.+.+
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 6666666666544455666666666666666665321110 00112233334455555555555443
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.8e-25 Score=227.95 Aligned_cols=255 Identities=18% Similarity=0.236 Sum_probs=155.5
Q ss_pred CCCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECC
Q 047549 76 THLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLP 154 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 154 (479)
.++++|++++|.++.++... ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~---~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT---SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCS---CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCC---CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 35778888888777655433 56666666666665 3444 3456666666666665 3443 44555556555
Q ss_pred CCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEc
Q 047549 155 VNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 234 (479)
Q Consensus 155 ~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 234 (479)
+|.+++... .+++|+.|++++|+++. ++. .+++|++|++
T Consensus 110 ~N~l~~l~~------------~l~~L~~L~L~~N~l~~-------------------------lp~----~l~~L~~L~L 148 (622)
T 3g06_A 110 SNPLTHLPA------------LPSGLCKLWIFGNQLTS-------------------------LPV----LPPGLQELSV 148 (622)
T ss_dssp SCCCCCCCC------------CCTTCCEEECCSSCCSC-------------------------CCC----CCTTCCEEEC
T ss_pred CCcCCCCCC------------CCCCcCEEECCCCCCCc-------------------------CCC----CCCCCCEEEC
Confidence 555543211 13445555555555543 322 1244445555
Q ss_pred cCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcccc
Q 047549 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFH 314 (479)
Q Consensus 235 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~ 314 (479)
++|.+++ +|. .+++|+.|++++|.+++. | ..+++|+.|++++|.++.++. ..++|+.|++++|.+.
T Consensus 149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 149 SDNQLAS-LPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT 214 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS
T ss_pred cCCcCCC-cCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCccc
Confidence 5544442 221 123455555555555442 2 234555566666655554432 1255666666666554
Q ss_pred ccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccccc
Q 047549 315 EAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGE 394 (479)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 394 (479)
. ++. .+++|+.|++++|++++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .
T Consensus 215 ~-l~~---------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~ 275 (622)
T 3g06_A 215 S-LPA---------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-R 275 (622)
T ss_dssp S-CCC---------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-S
T ss_pred c-cCC---------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-c
Confidence 3 221 34689999999999985 55 45689999999999998 4555 5789999999999999 7
Q ss_pred CCccccCCcccccccccccc
Q 047549 395 FPKEFCGLPALALQEAKNRA 414 (479)
Q Consensus 395 ~p~~~~~l~~L~~l~~~~~~ 414 (479)
+|..+.++++|+.+++++|.
T Consensus 276 lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCGGGGGSCTTCEEECCSCC
T ss_pred CCHHHhhccccCEEEecCCC
Confidence 78889999999876665543
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3e-26 Score=217.36 Aligned_cols=235 Identities=19% Similarity=0.202 Sum_probs=148.7
Q ss_pred CCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 121 FSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 121 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.++ .+|..+..
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~--------~~~l~~L~~L~Ls~n~l~-~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT--------MQQFAGLETLTLARNPLR-ALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSC--------GGGGTTCSEEEEESCCCC-CCCGGGGG
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHH--------HhccCCCCEEECCCCccc-cCcHHHhc
Confidence 477889999999988 77888888888888888888887 55654 455778888888888888 56777888
Q ss_pred CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEE
Q 047549 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYL 280 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (479)
+++|++|++++|.+.+.++. .+.. . ..+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 149 l~~L~~L~L~~n~~~~~~p~-~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPE-PLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCS-CSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCCCccccCh-hHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 88888888888776656654 2211 0 11122344566666666666665 345556666666666
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEE
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVL 360 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 360 (479)
++++|.++.++. .+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+..+++|++|
T Consensus 212 ~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p~~~~------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 212 KIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYPPIFG------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp EEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCBCCCCTT------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred EccCCCCCcCch---hhccCCCCCEEECcCCcchhhhHHHhc------CCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 666666664432 234444455555544444444443322 44556666666665555556556666666666
Q ss_pred eCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66666666566666666666666666554443
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=221.40 Aligned_cols=241 Identities=20% Similarity=0.243 Sum_probs=156.8
Q ss_pred EEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccc
Q 047549 56 HLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131 (479)
Q Consensus 56 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~ 131 (479)
.++.++.+++ .+|..+. ++++.|+|++|++++..+.. ++|++|++++|.+++ ..+..+..+++|++|++++
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE--ECGGGGTTCSSCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc--cChhhccCCccCCEEECCC
Confidence 4555555555 3455443 57788888888877665332 677777777777763 2334566777777777777
Q ss_pred cccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCC-cCccccchhhhcCCCCCeeecc
Q 047549 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN-SLSGFLPQFLMNCTNLITLNLR 210 (479)
Q Consensus 132 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~ 210 (479)
|+++...+..|..+++|++|++++|.++...+.. |..+++|++|++++| .+....+..+..+++|++|+++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT--------TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHH--------hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 7777444456677777777777777766444332 455677777777764 3443344456677777777777
Q ss_pred CCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCC
Q 047549 211 INNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI 290 (479)
Q Consensus 211 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 290 (479)
+|.+. .++ .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|+++.+
T Consensus 194 ~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 194 MCNLR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp TSCCS-SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred CCcCc-ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 77776 454 356667777777777777766666677777777777777777776666677777777777777777655
Q ss_pred CCccccccCCCCCcEEEccCcccc
Q 047549 291 TGAIGILMGCKNLRMLLLCKIFFH 314 (479)
Q Consensus 291 ~~~~~~l~~~~~L~~L~l~~n~~~ 314 (479)
+. ..+..+++|+.|++++|.+.
T Consensus 271 ~~--~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 271 PH--DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CT--TTTSSCTTCCEEECCSSCEE
T ss_pred Ch--hHhccccCCCEEEcCCCCcc
Confidence 53 33455666666666666554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.4e-27 Score=224.24 Aligned_cols=257 Identities=19% Similarity=0.174 Sum_probs=169.2
Q ss_pred CCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 98 LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 98 L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
++..+++.+.+.. .+...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+
T Consensus 12 l~i~~ls~~~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----------LESL 79 (317)
T ss_dssp EEEESCCTTTHHH--HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----------ETTC
T ss_pred eeEeeccccchhh--hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----------hhhc
Confidence 3344555554432 122233455677888888887776656677777778888887777765432 3456
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 257 (479)
++|++|++++|.+++.. ..++|+.|++++|.+.+ ++. ..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISR-VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSE-EEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCC-cCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 77777888777776432 23677777777777763 222 2356677777777777766566667777777777
Q ss_pred ccCCcccccChhhh-hccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEE
Q 047549 258 LSGNKIEEQISPTI-LALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVL 336 (479)
Q Consensus 258 l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L 336 (479)
+++|.+++..+..+ ..+++|++|++++|.++.++.. . .+++|++|
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~------------------------------~l~~L~~L 196 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----V------------------------------VFAKLKTL 196 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----C------------------------------CCTTCCEE
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----c------------------------------ccccCCEE
Confidence 77777776655555 3567777777777766544221 1 24567777
Q ss_pred EeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc-ccCCccccCCccccccccc
Q 047549 337 GIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 337 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~l~~~ 411 (479)
++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ +..|..+..++.|+.+++.
T Consensus 197 ~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 7777777743 334777777778888777777 45666777777888888887777 6666777777777766664
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.2e-27 Score=223.90 Aligned_cols=250 Identities=19% Similarity=0.168 Sum_probs=179.8
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCc-cccCccccC-------CCCCCcEEEccCCcccccCCccC
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR-GDLSAYNFS-------TLHNLHTIDLGNNNFTGSFPLTL 247 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~ 247 (479)
..++|+++++++|.+ .+|..+... |+.|++++|.+. ..++. .+. .+++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPS-RILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBH-HHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCH-HHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345677777777777 455555443 777777777774 23332 222 57788888888888877777765
Q ss_pred --cCCCCCCEEEccCCcccccChhhhhcc-----CCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCC
Q 047549 248 --TSCMFLTAIRLSGNKIEEQISPTILAL-----VSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDE 320 (479)
Q Consensus 248 --~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 320 (479)
..+++|++|++++|.+++. |..+..+ ++|++|++++|+++.++. ..+..+++|+.|++++|.+.+..+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC--EQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT--TTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH--HHhccCCCCCEEECCCCCcCcchHHH
Confidence 7778888888888888776 6666666 788888888888876553 45667788888888888765532100
Q ss_pred ccccccccccCCccEEEeeCCccee---cCchhhcCCCCCCEEeCCCCccccccC-cccCCCCCCcEEEccCCcccccCC
Q 047549 321 NQITISSYAFQNLVVLGIGNCEIKG---QIPTWLGKLKKLQVLDLGSNQITGPIP-GWLGNMPNLFYIDLSYNSISGEFP 396 (479)
Q Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p 396 (479)
. .+....+++|++|++++|++++ .....+..+++|++|++++|++.+..| ..+..+++|++|++++|+++ .+|
T Consensus 193 ~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 193 S--ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp H--HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred H--HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 0 0011256889999999998883 222445678999999999999987664 45667899999999999998 667
Q ss_pred ccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCC
Q 047549 397 KEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLN 476 (479)
Q Consensus 397 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N 476 (479)
..+. ++|+. |++++|++++. |. +..+++|+.|++++|
T Consensus 270 ~~~~--~~L~~---------------------------------------L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 270 KGLP--AKLSV---------------------------------------LDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SSCC--SEEEE---------------------------------------EECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred hhcc--CCceE---------------------------------------EECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 6555 55543 78889999855 66 889999999999999
Q ss_pred CCC
Q 047549 477 NFS 479 (479)
Q Consensus 477 ~l~ 479 (479)
+|+
T Consensus 307 ~l~ 309 (312)
T 1wwl_A 307 PFL 309 (312)
T ss_dssp TTT
T ss_pred CCC
Confidence 985
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.8e-25 Score=203.44 Aligned_cols=218 Identities=20% Similarity=0.238 Sum_probs=130.2
Q ss_pred CCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCC
Q 047549 37 STDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPS 116 (479)
Q Consensus 37 ~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~ 116 (479)
+.++|.|.|+.|.-.++.+.+++++++++. +|..+. +++++|++++|++++.++ .
T Consensus 1 ~~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~----------------------~ 55 (270)
T 2o6q_A 1 NEALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPS----------------------K 55 (270)
T ss_dssp CCCCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCT----------------------T
T ss_pred CCccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCH----------------------H
Confidence 368999999998765667788888887774 454443 456666666666554332 2
Q ss_pred cCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccch
Q 047549 117 GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196 (479)
Q Consensus 117 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~ 196 (479)
.+.++++|++|++++|.++...+..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..+.
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~ 127 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV--------FDQLVNLAELRLDRNQLKSLPPR 127 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT--------TTTCSSCCEEECCSSCCCCCCTT
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH--------cccccCCCEEECCCCccCeeCHH
Confidence 4555666666666666665333334455666666666666655433322 34456666666666666655555
Q ss_pred hhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCC
Q 047549 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVS 276 (479)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 276 (479)
.+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 128 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 5566666666666666665 344334555666666666666665444444555666666666666666554445555566
Q ss_pred CCEEEccCCCCC
Q 047549 277 VSYLSINNNNLS 288 (479)
Q Consensus 277 L~~L~L~~n~l~ 288 (479)
|+.|++++|.+.
T Consensus 207 L~~L~l~~N~~~ 218 (270)
T 2o6q_A 207 LKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCBC
T ss_pred CCEEEecCCCee
Confidence 666666665543
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=7.7e-29 Score=255.31 Aligned_cols=401 Identities=15% Similarity=0.064 Sum_probs=260.7
Q ss_pred CCCEEEEECCCCCc---ccccccccc------------CCCCCCeeecCCCcCCCcCCC-----CCC-CCEEEcCCcccc
Q 047549 51 EAQVTHLWLPDRGL---RGSIYPFTG------------KLTHLCHLNLSHNHLSFLSPS-----VPF-LSILDFSHNYFR 109 (479)
Q Consensus 51 ~~~l~~L~l~~~~l---~~~~~~~l~------------~l~~L~~L~L~~n~l~~~~~~-----~~~-L~~L~L~~n~l~ 109 (479)
.+++++|+++++.- .+.+|..++ .+++|++|++++|.+++.... ++. |++|++++|...
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 67899999988642 133343333 789999999999987654322 234 999999998621
Q ss_pred cCCCCCCcCCCCCCCcEEEccccccccC----CCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEc
Q 047549 110 GHCQLPSGLGNFSKLQTFRAGFSYLSGS----IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKL 185 (479)
Q Consensus 110 ~~~~l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L 185 (479)
....++....++++|++|++++|.+++. ++.....+++|++|++++|.+++.....+..+ +..+++|++|++
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~----~~~~~~L~~L~L 227 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI----ARNCRSLVSVKV 227 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH----HHHCTTCCEEEC
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH----HhhCCCCcEEec
Confidence 1112333345789999999999988755 22334568999999999998873322222221 346799999999
Q ss_pred cCCcCccccchhhhcCCCCCeeeccCCcCc---cccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCc
Q 047549 186 HTNSLSGFLPQFLMNCTNLITLNLRINNFR---GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNK 262 (479)
Q Consensus 186 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 262 (479)
++|.+.+ ++..+..+++|+.|+++..... +... ..+..+++|+.++++++... .+|..+..+++|++|++++|.
T Consensus 228 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 228 GDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY-MNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp SSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS-SCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCC
T ss_pred cCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH-HHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCc
Confidence 9999885 6788899999999999853322 1122 25667788999998876433 567777788899999999998
Q ss_pred ccccCh-hhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccC-----------ccccccCCCCcccccccccc
Q 047549 263 IEEQIS-PTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK-----------IFFHEAIPDENQITISSYAF 330 (479)
Q Consensus 263 l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~-----------n~~~~~~~~~~~~~~~~~~~ 330 (479)
+++... ..+..+++|+.|+++ +.+... ........+++|+.|++++ +.+++.... .....+
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~-~~~~~~-~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-----~l~~~~ 377 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETR-NVIGDR-GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI-----ALAQGC 377 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEE-GGGHHH-HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH-----HHHHHC
T ss_pred CCHHHHHHHHHhCcCCCEEecc-CccCHH-HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH-----HHHhhC
Confidence 765443 345788999999998 433321 1112335678899999983 333322111 011247
Q ss_pred CCccEEEeeCCcceecCchhhcC-CCCCCEEeCC----CCccccc-----cCcccCCCCCCcEEEccCCc--ccccCCcc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGK-LKKLQVLDLG----SNQITGP-----IPGWLGNMPNLFYIDLSYNS--ISGEFPKE 398 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~p~~ 398 (479)
++|++|+++.+++++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 88999999888888766666655 8889999886 5666643 33345668889999987543 55554444
Q ss_pred cc-CCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCccccc-CChhhhcccccCeeeCCCC
Q 047549 399 FC-GLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGS-IPIEIGNVMFLHVLDLSLN 476 (479)
Q Consensus 399 ~~-~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~-~~~~~~~~~~L~~L~ls~N 476 (479)
+. .+++|+.++++++......-........+| ..|++++|.+++. ++..+..+++|+.|++++|
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L--------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL--------------QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTC--------------CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCccc--------------CeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 43 367788777765532110000011112223 3466777776544 3334456777777777777
Q ss_pred CCC
Q 047549 477 NFS 479 (479)
Q Consensus 477 ~l~ 479 (479)
++|
T Consensus 524 ~it 526 (592)
T 3ogk_B 524 RAS 526 (592)
T ss_dssp BCC
T ss_pred cCC
Confidence 664
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.2e-27 Score=223.92 Aligned_cols=248 Identities=20% Similarity=0.214 Sum_probs=147.0
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccc-cCCCccCC-------CCCCCCEEECCCCcccccCCcccc
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLS-GSIPDDVS-------AAASLEDISLPVNQLSGAISNGVV 167 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~ 167 (479)
++|++|++++|.+ .+|..+... |++|++++|.+. ..++..+. ++++|++|++++|.+++..|..+.
T Consensus 43 ~~L~~l~l~~n~l----~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE----ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCCTT----CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCceeEeeccccc----ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4677777777776 245544332 667777777763 34444443 567777777777777766665431
Q ss_pred ccCCCCCCCCCCCCEEEccCCcCccccchhhhcC-----CCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccccc
Q 047549 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNC-----TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS 242 (479)
Q Consensus 168 ~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (479)
+..+++|++|++++|.+++. |..+..+ ++|++|++++|.+. .++...+..+++|++|++++|++.+.
T Consensus 117 ------~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 117 ------EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp ------SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred ------HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcc
Confidence 24567777777777777755 5555555 66666666666665 33333556666666666666665433
Q ss_pred --CCccC--cCCCCCCEEEccCCccccc---ChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc
Q 047549 243 --FPLTL--TSCMFLTAIRLSGNKIEEQ---ISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 243 --~~~~~--~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
.+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+++
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------------- 242 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-------------------------- 242 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS--------------------------
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc--------------------------
Confidence 12222 4555666666666665521 11223344555555555555543
Q ss_pred cCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 316 AIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
..+.... ..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 243 ~~~~~~~-----~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 243 AAGAPSC-----DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCSCC-----CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ccchhhh-----hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2221111 13456777777777776 5565554 6777888888877754 44 7777778888888887764
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-25 Score=224.47 Aligned_cols=237 Identities=20% Similarity=0.183 Sum_probs=164.6
Q ss_pred CCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhh
Q 047549 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~ 199 (479)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------l~~l~~L~~L~Ls~N~l~~l~~---- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----------LESLSTLRTLDLNNNYVQELLV---- 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----------CTTCTTCCEEECCSSEEEEEEE----
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----------cccCCCCCEEEecCCcCCCCCC----
Confidence 34477777777777776666677777777777777777765443 3456777777777777774332
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhh-ccCCCC
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL-ALVSVS 278 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~ 278 (479)
.++|+.|++++|.+.+ ++. ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+
T Consensus 98 -~~~L~~L~L~~N~l~~-~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 -GPSIETLHAANNNISR-VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp -CTTCCEEECCSSCCCC-EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred -CCCcCEEECcCCcCCC-CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 2677777777777763 222 2356777777777777766666777777777778877777776666664 567777
Q ss_pred EEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCC
Q 047549 279 YLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQ 358 (479)
Q Consensus 279 ~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 358 (479)
.|++++|.+++++. .. .+++|++|++++|++++..+ .+..+++|+
T Consensus 173 ~L~Ls~N~l~~~~~----~~------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~ 217 (487)
T 3oja_A 173 HLNLQYNFIYDVKG----QV------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVT 217 (487)
T ss_dssp EEECTTSCCCEEEC----CC------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCS
T ss_pred EEecCCCccccccc----cc------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCcc
Confidence 77777777664422 11 24567777777777775433 477778888
Q ss_pred EEeCCCCccccccCcccCCCCCCcEEEccCCccc-ccCCccccCCccccccccc
Q 047549 359 VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 359 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~l~~~ 411 (479)
.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|..+..++.|+.+++.
T Consensus 218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 88888888874 6666777888888888888877 5666777777777766653
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-25 Score=210.80 Aligned_cols=241 Identities=20% Similarity=0.123 Sum_probs=181.3
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++. + ..++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~--~~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-L--DLESLSTLRTLDLNNNYVQEL-L----VGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-E--EETTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-h--hhhhcCCCCEEECcCCccccc-c----CCCCcC
Confidence 4567889999999998887778888899999999999988743 3 277888899999999888743 2 337888
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCcc
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~ 334 (479)
+|++++|.+++..+. .+++|++|++++|.++.++. ..+..+++|+.|++++|.+.+..+.... ..+++|+
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~~l~~L~ 172 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDTVNFAELA-----ASSDTLE 172 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTTSCCCEEEGGGGG-----GGTTTCC
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCCCCCCcccHHHHh-----hccCcCC
Confidence 999999888776544 35678888888888886643 3456678888888888887765443322 2457888
Q ss_pred EEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccccccc
Q 047549 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA 414 (479)
Q Consensus 335 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~ 414 (479)
+|++++|++++. +. ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..++.|+.
T Consensus 173 ~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~------- 241 (317)
T 3o53_A 173 HLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH------- 241 (317)
T ss_dssp EEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE-------
T ss_pred EEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE-------
Confidence 888888888754 32 3347888888888888874 4445778888888888888888 45666777766653
Q ss_pred CCCCcccCcccccccccccccccccccCCCCeEEccCCccc-ccCChhhhcccccCeeeCCCC
Q 047549 415 DGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLN-GSIPIEIGNVMFLHVLDLSLN 476 (479)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~-~~~~~~~~~~~~L~~L~ls~N 476 (479)
|++++|++. +.+|..+..++.|+.|++++|
T Consensus 242 --------------------------------L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 242 --------------------------------FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp --------------------------------EECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --------------------------------EEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 788888888 778888899988888887743
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=9.8e-28 Score=247.06 Aligned_cols=408 Identities=15% Similarity=0.100 Sum_probs=273.7
Q ss_pred CccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCC---CcCC----------------CCCCCCE
Q 047549 40 CCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLS---FLSP----------------SVPFLSI 100 (479)
Q Consensus 40 ~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~----------------~~~~L~~ 100 (479)
|++|.++.+... ..+.+.++ .....+..+..+++|++|+++++... +..| ..++|++
T Consensus 41 ck~W~~~~~~~~---~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 116 (592)
T 3ogk_B 41 CRRWFKIDSETR---EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116 (592)
T ss_dssp CHHHHHHHHHHC---CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred hHHHHHhhhccc---cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCe
Confidence 447887754322 22333332 22334455678999999999875321 1111 2389999
Q ss_pred EEcCCcccccCCCCCCcCCC-CCC-CcEEEccccc-ccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 101 LDFSHNYFRGHCQLPSGLGN-FSK-LQTFRAGFSY-LSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 101 L~L~~n~l~~~~~l~~~~~~-l~~-L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
|++++|.+++ ..+..+.. +++ |++|++++|. +.. .++.....+++|++|++++|.+++.....+..+ ...
T Consensus 117 L~L~~~~i~~--~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~----~~~ 190 (592)
T 3ogk_B 117 VHFRRMIVSD--LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL----AQH 190 (592)
T ss_dssp EEEESCBCCH--HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH----HHH
T ss_pred EEeeccEecH--HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH----Hhc
Confidence 9999998764 23334444 445 9999999886 221 222233478999999999998875533222221 345
Q ss_pred CCCCCEEEccCCcCc----cccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccc---ccCCccCcC
Q 047549 177 LANLKSLKLHTNSLS----GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT---GSFPLTLTS 249 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~ 249 (479)
+++|++|++++|.++ +.++..+..+++|+.|++++|.+. .++ ..+..+++|++|+++..... ...+..+..
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHH-HHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 789999999999987 335556678999999999999987 455 36788999999999864332 234456778
Q ss_pred CCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccc
Q 047549 250 CMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYA 329 (479)
Q Consensus 250 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 329 (479)
+++|+.++++++.. ...+..+..+++|++|++++|.++.. .....+..+++|+.|+++ +.+...... .....
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~-~~~~~~~l~-----~~~~~ 340 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEVLETR-NVIGDRGLE-----VLAQY 340 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHH-HHHHHHTTCTTCCEEEEE-GGGHHHHHH-----HHHHH
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHH-HHHHHHHhCcCCCEEecc-CccCHHHHH-----HHHHh
Confidence 89999999998644 34677788899999999999986532 111346789999999998 333321111 11125
Q ss_pred cCCccEEEeeC-----------Ccceec-CchhhcCCCCCCEEeCCCCccccccCcccCC-CCCCcEEEcc----CCccc
Q 047549 330 FQNLVVLGIGN-----------CEIKGQ-IPTWLGKLKKLQVLDLGSNQITGPIPGWLGN-MPNLFYIDLS----YNSIS 392 (479)
Q Consensus 330 ~~~L~~L~l~~-----------n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~ 392 (479)
+++|++|++++ +.+++. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 78999999994 556543 3334566899999999999998766666655 8999999996 67787
Q ss_pred cc-----CCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCccccc-CChhhhccc
Q 047549 393 GE-----FPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGS-IPIEIGNVM 466 (479)
Q Consensus 393 ~~-----~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~-~~~~~~~~~ 466 (479)
+. ++..+.++++|+.++++.+... . ....+. .+. ..++. ...|++++|++++. ++..+..++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~-l-~~~~~~------~~~---~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGG-L-TDLGLS------YIG---QYSPN-VRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGG-C-CHHHHH------HHH---HSCTT-CCEEEECSCCSSHHHHHHHHTCCT
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCC-c-cHHHHH------HHH---HhCcc-ceEeeccCCCCCHHHHHHHHhcCc
Confidence 53 3334667888988888532110 0 000000 000 00111 15688999998863 556668899
Q ss_pred ccCeeeCCCCCCC
Q 047549 467 FLHVLDLSLNNFS 479 (479)
Q Consensus 467 ~L~~L~ls~N~l~ 479 (479)
+|++|++++|+++
T Consensus 489 ~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 489 NLQKLEMRGCCFS 501 (592)
T ss_dssp TCCEEEEESCCCB
T ss_pred ccCeeeccCCCCc
Confidence 9999999999864
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.7e-24 Score=214.86 Aligned_cols=238 Identities=21% Similarity=0.131 Sum_probs=170.8
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 45688888888888887777888888888888888888874332 777888888888888887432 2277888
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccE
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~ 335 (479)
|++++|.+++..+. .+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+.+..+..+. ..+++|++
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~~l~~L~~ 173 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDTVNFAELA-----ASSDTLEH 173 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG--BCGGGGSSEEEEECTTSCCCEEEGGGGG-----GGTTTCCE
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc--hhhcCCCCCCEEECCCCCCCCcChHHHh-----hhCCcccE
Confidence 88888888776543 35678888888888876543 3456677788888888877765544332 14567788
Q ss_pred EEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccC
Q 047549 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415 (479)
Q Consensus 336 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 415 (479)
|++++|.+++..+ ...+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..++.|+.
T Consensus 174 L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~-------- 241 (487)
T 3oja_A 174 LNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH-------- 241 (487)
T ss_dssp EECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCE--------
T ss_pred EecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCE--------
Confidence 8888887775422 33577788888888887753 4447777778888888887774 5655666666543
Q ss_pred CCCcccCcccccccccccccccccccCCCCeEEccCCccc-ccCChhhhcccccCeeeCC
Q 047549 416 GNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLN-GSIPIEIGNVMFLHVLDLS 474 (479)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~-~~~~~~~~~~~~L~~L~ls 474 (479)
|++++|.+. +.+|..+..++.|+.++++
T Consensus 242 -------------------------------L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 -------------------------------FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -------------------------------EECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------------EEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 677888877 6777888888888877764
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7e-23 Score=189.67 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=74.6
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT 202 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 202 (479)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--------YQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT--------TTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH--------ccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 4555555555555444445555555555555555554433322 33455555666666555555445555555
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCccccc-CCccCcCCCCCCEEEccCCcccccChhhhhcc
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS-FPLTLTSCMFLTAIRLSGNKIEEQISPTILAL 274 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 274 (479)
+|++|++++|.+. .++...+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+
T Consensus 101 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred cccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 6666666655554 23323455555555555555555432 34555555555555555555555444444333
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=6.6e-23 Score=189.82 Aligned_cols=201 Identities=23% Similarity=0.285 Sum_probs=106.7
Q ss_pred CCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEE
Q 047549 76 THLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDI 151 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 151 (479)
++|++|++++|++++.++. .++|++|++++|.+++ ..+..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc--cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 4677777777777665442 2566666666666553 222345566666666666666655555556666666666
Q ss_pred ECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc-cchhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 152 SLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF-LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 152 ~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
++++|.+.+..+.. +..+++|++|++++|.+++. +|..+..+++|+.|++++|.+. .++...+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 106 VAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176 (276)
T ss_dssp ECTTSCCCCSTTCC--------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCT
T ss_pred ECCCCCccccCchh--------cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhcc
Confidence 66666555433322 34455666666666665542 3555555666666666666555 23322333333333
Q ss_pred ----EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 231 ----TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 231 ----~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+|++++|.+++..+..+ ...+|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 55555555553322222 2234555555555555444444444555555555555443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=8.2e-23 Score=190.12 Aligned_cols=169 Identities=20% Similarity=0.205 Sum_probs=83.1
Q ss_pred hcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCC
Q 047549 199 MNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVS 278 (479)
Q Consensus 199 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 278 (479)
..+++++.++++++.++ .+|. .+ .++++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 34455555555555554 3442 11 24555555555555544444555555555555555555443221 3445555
Q ss_pred EEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCC
Q 047549 279 YLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQ 358 (479)
Q Consensus 279 ~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 358 (479)
+|++++|.++.++. .+.. +++|++|++++|++++..+..|..+++|+
T Consensus 81 ~L~Ls~N~l~~l~~---~~~~------------------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 81 TLDLSHNQLQSLPL---LGQT------------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQ 127 (290)
T ss_dssp EEECCSSCCSSCCC---CTTT------------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred EEECCCCcCCcCch---hhcc------------------------------CCCCCEEECCCCcCcccCHHHHcCCCCCC
Confidence 55555555544332 2233 44555555555555544444455555555
Q ss_pred EEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccc
Q 047549 359 VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406 (479)
Q Consensus 359 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 406 (479)
+|++++|++.+..+..|..+++|++|++++|++++..+..|.++++|+
T Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 555555555544444445555555555555555543334444444443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5.2e-22 Score=183.08 Aligned_cols=203 Identities=21% Similarity=0.236 Sum_probs=152.1
Q ss_pred CCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
..++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++...+.. |..
T Consensus 17 ~~~~l~~~~~~l~---~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~--------~~~ 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLT---AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI--------FKE 83 (270)
T ss_dssp TTTEEECTTSCCS---SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT--------TSS
T ss_pred CCCEEEccCCCCC---ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh--------hcC
Confidence 4556666666665 4565443 57888888888888666667888899999999988887544332 466
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEE
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 788899999988888776777788888888888888887 4554567888888888888888886555567788888888
Q ss_pred EccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
++++|.+++..+..|..+++|++|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH--HHhccccCCCEEEecCCCeeC
Confidence 888888888777777888888888888888876654 335556666666666665543
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=6.4e-26 Score=233.63 Aligned_cols=345 Identities=15% Similarity=0.105 Sum_probs=170.0
Q ss_pred CCCEEEEECCCCCccc---cccc------------cccCCCCCCeeecCCCcCCCcCC-----CCCCCCEEEcCCc-ccc
Q 047549 51 EAQVTHLWLPDRGLRG---SIYP------------FTGKLTHLCHLNLSHNHLSFLSP-----SVPFLSILDFSHN-YFR 109 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~---~~~~------------~l~~l~~L~~L~L~~n~l~~~~~-----~~~~L~~L~L~~n-~l~ 109 (479)
.+++++|+++++.... ..|. ....+++|++|++++|.+++... .+++|++|++++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 3567777777764221 1111 12356788888888877664321 2478888888877 343
Q ss_pred cCCCCCCcCCCCCCCcEEEccccccccCCCccC----CCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEc
Q 047549 110 GHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDV----SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKL 185 (479)
Q Consensus 110 ~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L 185 (479)
.. .++..+.++++|++|++++|.+++..+..+ ..+++|++|+++++. .......+..+ +..+++|++|++
T Consensus 145 ~~-~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l----~~~~~~L~~L~L 218 (594)
T 2p1m_B 145 TD-GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL----VTRCPNLKSLKL 218 (594)
T ss_dssp HH-HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH----HHHCTTCCEEEC
T ss_pred HH-HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH----HHhCCCCcEEec
Confidence 20 133344467888888888887665433333 356688888888775 11111111111 223577888888
Q ss_pred cCC-cCccccchhhhcCCCCCeeeccCCc-------CccccCccccCCCCCCcEE-EccCCcccccCCccCcCCCCCCEE
Q 047549 186 HTN-SLSGFLPQFLMNCTNLITLNLRINN-------FRGDLSAYNFSTLHNLHTI-DLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 186 ~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
++| .+++ ++..+..+++|+.|+++.+. +. .++. .+..+++|+.+ .+..... ..++..+..+++|++|
T Consensus 219 ~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 219 NRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTL 294 (594)
T ss_dssp CTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEE
T ss_pred CCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEE
Confidence 877 3343 66667777778887755442 11 1111 33445555555 2222111 1233333345566666
Q ss_pred EccCCcccccChh-hhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCc---------cccccCCCCcccccc
Q 047549 257 RLSGNKIEEQISP-TILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI---------FFHEAIPDENQITIS 326 (479)
Q Consensus 257 ~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n---------~~~~~~~~~~~~~~~ 326 (479)
++++|.++..... .+..+++|+.|++++| +.. .........+++|+.|++..+ .+++... ...
T Consensus 295 ~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l-----~~l 367 (594)
T 2p1m_B 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL-----VSV 367 (594)
T ss_dssp ECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH-----HHH
T ss_pred EccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH-----HHH
Confidence 6666654432221 2345566666666655 221 000011223556666665321 1111000 000
Q ss_pred ccccCCccEEEeeCCcceecCchhhc-CCCCCCEEeCC--C----Cccccc-----cCcccCCCCCCcEEEccCCccccc
Q 047549 327 SYAFQNLVVLGIGNCEIKGQIPTWLG-KLKKLQVLDLG--S----NQITGP-----IPGWLGNMPNLFYIDLSYNSISGE 394 (479)
Q Consensus 327 ~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~ 394 (479)
...+++|++|.++.+++++.....+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 01245566665555555543333332 35566666665 2 333311 111234455666666654 44433
Q ss_pred CCccccC-Cccccccccccc
Q 047549 395 FPKEFCG-LPALALQEAKNR 413 (479)
Q Consensus 395 ~p~~~~~-l~~L~~l~~~~~ 413 (479)
.+..+.. +++|+.++++++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHhchhccEeeccCC
Confidence 3333333 455555555443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.1e-22 Score=187.80 Aligned_cols=211 Identities=18% Similarity=0.179 Sum_probs=126.7
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEE
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+++|+.|++++|.++.. ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34444444444444421 224444555555555554442 21 34445555555555555554444444555555555
Q ss_pred EccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEE
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVL 336 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L 336 (479)
++++|.+++..+..+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+.+..+..+. .+++|++|
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L 186 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVFDKLTNLTELDLSYNQLQSLPEGVFD------KLTQLKDL 186 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTT------TCTTCCEE
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH--HHhccCccCCEEECCCCCcCccCHHHhc------CCccCCEE
Confidence 555555555444445555555555555555554332 2234455555555555555543332222 56788999
Q ss_pred EeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccc
Q 047549 337 GIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 337 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
++++|++++..+..+..+++|+.|++++|.+.+ .+++++.|+++.|.++|.+|.+++.+.....
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~~~ 250 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPDSA 250 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGGGS
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCCCC
Confidence 999999987777778899999999999998863 3567899999999999999999888776543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.8e-23 Score=190.16 Aligned_cols=177 Identities=23% Similarity=0.271 Sum_probs=102.7
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
++|++|++++|.+. .+ ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+.. +.
T Consensus 41 ~~L~~L~l~~~~i~---~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~--------~~ 106 (272)
T 3rfs_A 41 NSIDQIIANNSDIK---SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGV--------FD 106 (272)
T ss_dssp TTCCEEECTTSCCC---CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTT--------TT
T ss_pred cceeeeeeCCCCcc---cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhH--------hc
Confidence 55555566555554 22 235566666666666666653 2 24556666666666666665443332 34
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|+.
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 4566666666666666555555566666666666666665 343334555666666666666666444444555666666
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCC
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (479)
|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 66666666665555555566666666665544
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.9e-22 Score=183.88 Aligned_cols=200 Identities=20% Similarity=0.194 Sum_probs=91.2
Q ss_pred ccCCCCCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCE
Q 047549 72 TGKLTHLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLED 150 (479)
Q Consensus 72 l~~l~~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 150 (479)
++.++++++++++++.++.+++.. +.+++|++++|.+++ ..+..+..+++|++|++++|.+++. +. ...+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSE--EEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCc--cCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCE
Confidence 455566666666666666554433 445555555555542 2233455555555555555555422 21 134455555
Q ss_pred EECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 151 ISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 151 L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
|++++|.++. +|.. +..+++|++|++++|++++..+..|..+++|++|++++|.+. .++...|..+++|+
T Consensus 82 L~Ls~N~l~~-l~~~--------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 82 LDLSHNQLQS-LPLL--------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE 151 (290)
T ss_dssp EECCSSCCSS-CCCC--------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred EECCCCcCCc-Cchh--------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCC
Confidence 5555554442 2221 233444455555555544444444444444444444444444 23333344444444
Q ss_pred EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCC
Q 047549 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (479)
.|++++|+++...+..+..+++|+.|++++|.++. +|..+....+|+.+++++|.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCC
Confidence 44444444442222233344444444444444442 22333333344444444443
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.3e-24 Score=208.60 Aligned_cols=255 Identities=20% Similarity=0.233 Sum_probs=139.6
Q ss_pred CCCCcCCCCCCCcEEEccccccccC----CCccCCCCCCCCEEECCCCc---ccccCCccccccCCCCCCCCCCCCEEEc
Q 047549 113 QLPSGLGNFSKLQTFRAGFSYLSGS----IPDDVSAAASLEDISLPVNQ---LSGAISNGVVNLTSLNIGKLANLKSLKL 185 (479)
Q Consensus 113 ~l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~l~~~~~~~L~~L~L 185 (479)
.++..+..+++|++|++++|.+... ++..+..+++|++|++++|. +.+.+|..+..+.. .+..+++|++|++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~-~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ-ALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH-HHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH-HHhhCCcccEEEC
Confidence 4555666677777777777776643 23335667777777777653 33333433221110 1244566666677
Q ss_pred cCCcCcc----ccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCC---------CC
Q 047549 186 HTNSLSG----FLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSC---------MF 252 (479)
Q Consensus 186 ~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------~~ 252 (479)
++|.++. .++..+..+++|++|++++|.+.+..+ ..+.. .+..+ ++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~--------------------~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG-AKIAR--------------------ALQELAVNKKAKNAPP 160 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH-HHHHH--------------------HHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH-HHHHH--------------------HHHHHhhhhhcccCCC
Confidence 6666665 345556666666666666666542111 01111 11111 44
Q ss_pred CCEEEccCCccccc-Ch---hhhhccCCCCEEEccCCCCCC--CCCccc-cccCCCCCcEEEccCcccc----ccCCCCc
Q 047549 253 LTAIRLSGNKIEEQ-IS---PTILALVSVSYLSINNNNLSN--ITGAIG-ILMGCKNLRMLLLCKIFFH----EAIPDEN 321 (479)
Q Consensus 253 L~~L~l~~n~l~~~-~~---~~~~~l~~L~~L~L~~n~l~~--~~~~~~-~l~~~~~L~~L~l~~n~~~----~~~~~~~ 321 (479)
|++|++++|.++.. .+ ..+..+++|+.|++++|.++. +..... .+..+++|+.|++++|.++ ..++...
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 55555555544311 12 233445555555555555441 111112 3445555555555555553 2222111
Q ss_pred cccccccccCCccEEEeeCCcceec----CchhhcC--CCCCCEEeCCCCcccc----ccCccc-CCCCCCcEEEccCCc
Q 047549 322 QITISSYAFQNLVVLGIGNCEIKGQ----IPTWLGK--LKKLQVLDLGSNQITG----PIPGWL-GNMPNLFYIDLSYNS 390 (479)
Q Consensus 322 ~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~--l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~L~~N~ 390 (479)
..+++|++|++++|++++. ++..+.. +++|++|+|++|.+.+ .+|..+ .++++|++|++++|+
T Consensus 241 ------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 241 ------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ------ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2456777888888777654 4555533 7888888888888876 366655 557888888888888
Q ss_pred ccccC
Q 047549 391 ISGEF 395 (479)
Q Consensus 391 l~~~~ 395 (479)
+++..
T Consensus 315 l~~~~ 319 (386)
T 2ca6_A 315 FSEED 319 (386)
T ss_dssp SCTTS
T ss_pred CCcch
Confidence 87555
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.1e-23 Score=199.78 Aligned_cols=232 Identities=18% Similarity=0.177 Sum_probs=144.6
Q ss_pred EEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc----hhhhcCC-CCCeeeccCCcCccccCccccC
Q 047549 150 DISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP----QFLMNCT-NLITLNLRINNFRGDLSAYNFS 224 (479)
Q Consensus 150 ~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~ 224 (479)
.+.++.|.+++.+|..+ ...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+ ..+.
T Consensus 2 ~~~ls~n~~~~~~~~~~--------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~ 72 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT--------SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELV 72 (362)
T ss_dssp EEECCCCTTCCHHHHHH--------TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHH
T ss_pred ccccccccchHHHHHHH--------hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHH
Confidence 35677777776666532 234558888888888886655 6667777 78888888888763322 2333
Q ss_pred CC-----CCCcEEEccCCcccccCCcc----CcCC-CCCCEEEccCCcccccChhhhhc-----cCCCCEEEccCCCCCC
Q 047549 225 TL-----HNLHTIDLGNNNFTGSFPLT----LTSC-MFLTAIRLSGNKIEEQISPTILA-----LVSVSYLSINNNNLSN 289 (479)
Q Consensus 225 ~l-----~~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~ 289 (479)
.+ ++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+.. .++|++|++++|.+++
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 32 78888888888877555443 3333 67888888888887766655443 3578888888887764
Q ss_pred CCC--ccccccCCC-CCcEEEccCccccccCCCCcccccccccc-CCccEEEeeCCcceec----CchhhcC-CCCCCEE
Q 047549 290 ITG--AIGILMGCK-NLRMLLLCKIFFHEAIPDENQITISSYAF-QNLVVLGIGNCEIKGQ----IPTWLGK-LKKLQVL 360 (479)
Q Consensus 290 ~~~--~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L 360 (479)
... ....+...+ +|+.|++++|.+.+..+......+ ... ++|++|++++|++++. ++..+.. .++|++|
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL--ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence 321 112233444 777777777777654432211100 122 4677777777777642 3444444 3477777
Q ss_pred eCCCCccccccC----cccCCCCCCcEEEccCCccc
Q 047549 361 DLGSNQITGPIP----GWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 361 ~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 392 (479)
++++|++.+..+ ..+..+++|++|++++|.+.
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 777777765322 33456677777777777754
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=5.4e-24 Score=203.12 Aligned_cols=269 Identities=21% Similarity=0.260 Sum_probs=144.5
Q ss_pred CCCccceeEEeCCCCCEEEEECCCCCccccccccccCC--CCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCC
Q 047549 38 TDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKL--THLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLP 115 (479)
Q Consensus 38 ~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~ 115 (479)
.-|.+|.++.|+ ...++.++++++.+. +..+..+ ++++.|++++|.+.+..+.
T Consensus 34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--------------------- 88 (336)
T 2ast_B 34 GVCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--------------------- 88 (336)
T ss_dssp SSCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS---------------------
T ss_pred HHHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh---------------------
Confidence 345579888775 445788999888766 3445555 6777777777776654433
Q ss_pred CcCCCCCCCcEEEccccccccC-CCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCC-cCccc
Q 047549 116 SGLGNFSKLQTFRAGFSYLSGS-IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN-SLSGF 193 (479)
Q Consensus 116 ~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n-~l~~~ 193 (479)
+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+.. +..+++|++|++++| .+++.
T Consensus 89 --~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~--------l~~~~~L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 89 --HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT--------LAKNSNLVRLNLSGCSGFSEF 158 (336)
T ss_dssp --CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH--------HTTCTTCSEEECTTCBSCCHH
T ss_pred --hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH--------HhcCCCCCEEECCCCCCCCHH
Confidence 23345555555555554432 4444445555555555555444333332 233455555555555 44432
Q ss_pred -cchhhhcCCCCCeeeccCC-cCccc-cCccccCCCC-CCcEEEccCC--ccc-ccCCccCcCCCCCCEEEccCCc-ccc
Q 047549 194 -LPQFLMNCTNLITLNLRIN-NFRGD-LSAYNFSTLH-NLHTIDLGNN--NFT-GSFPLTLTSCMFLTAIRLSGNK-IEE 265 (479)
Q Consensus 194 -~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~ 265 (479)
++..+..+++|++|++++| .+++. ++ ..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHH-HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 3444555555666666555 54421 12 1344455 5666666665 232 2334444556666666666666 444
Q ss_pred cChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCcccccccccc-CCccEEEeeCCcce
Q 047549 266 QISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAF-QNLVVLGIGNCEIK 344 (479)
Q Consensus 266 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~ 344 (479)
..+..+..+++|++|++++|. ...+..+..+..+++|+.|++++| + +..... .+ ..+..|++++|+++
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~-i----~~~~~~-----~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI-V----PDGTLQ-----LLKEALPHLQINCSHFT 306 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS-S----CTTCHH-----HHHHHSTTSEESCCCSC
T ss_pred HHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc-c----CHHHHH-----HHHhhCcceEEecccCc
Confidence 455556666666666666664 111122234556666777777666 2 111110 11 23555667777777
Q ss_pred ecCchhhcC
Q 047549 345 GQIPTWLGK 353 (479)
Q Consensus 345 ~~~~~~l~~ 353 (479)
+..|..++.
T Consensus 307 ~~~~~~~~~ 315 (336)
T 2ast_B 307 TIARPTIGN 315 (336)
T ss_dssp CTTCSSCSS
T ss_pred cccCCcccc
Confidence 766665553
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=9.8e-23 Score=191.93 Aligned_cols=230 Identities=19% Similarity=0.215 Sum_probs=119.1
Q ss_pred CCcEEEccccccccCCCc---cCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc----
Q 047549 123 KLQTFRAGFSYLSGSIPD---DVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP---- 195 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~---- 195 (479)
.++.+.+..+.+...... .+..+++|++|++++|.+.+..|..+.. ..+++|++|++++|.+++..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE------ATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS------CCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh------ccCCCCCEEEeecccccchhhhhHH
Confidence 456666666554321000 0112344666666666666555543200 345566666666666654322
Q ss_pred hhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccccc--C--CccCcCCCCCCEEEccCCcccccCh--h
Q 047549 196 QFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS--F--PLTLTSCMFLTAIRLSGNKIEEQIS--P 269 (479)
Q Consensus 196 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~--~ 269 (479)
..+..+++|++|++++|.+. .++...+..+++|++|++++|++.+. + +..+..+++|++|++++|.++.... .
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 22334555566666555554 23323455555555555555554321 1 1122344555555555555543111 1
Q ss_pred -hhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc
Q 047549 270 -TILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP 348 (479)
Q Consensus 270 -~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 348 (479)
.+..+++|++|++++|+++ +..|..... ...+++|++|++++|+++ .+|
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~--------------------------~~~p~~~~~---~~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLR--------------------------ATVNPSAPR---CMWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCC--------------------------CCCCSCCSS---CCCCTTCCCEECCSSCCC-SCC
T ss_pred HHHhcCCCCCEEECCCCCCC--------------------------ccchhhHHh---ccCcCcCCEEECCCCCCC-chh
Confidence 1234455555555555544 333322110 012356777777777777 455
Q ss_pred hhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 349 TWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 349 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
..+. ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 5553 6788888888887743 33 5667788888888887763
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.6e-22 Score=187.31 Aligned_cols=228 Identities=17% Similarity=0.162 Sum_probs=142.7
Q ss_pred CCCCEEEccCCcCccccch---hhhcCCCCCeeeccCCcCccccCcccc--CCCCCCcEEEccCCcccccCC----ccCc
Q 047549 178 ANLKSLKLHTNSLSGFLPQ---FLMNCTNLITLNLRINNFRGDLSAYNF--STLHNLHTIDLGNNNFTGSFP----LTLT 248 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~ 248 (479)
..++.+.+.++.++..... .+..+++|++|++++|.+.+..+. .+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 4567777777766532111 122345677777777777655554 33 666777777777777665433 2233
Q ss_pred CCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCcccccccc
Q 047549 249 SCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSY 328 (479)
Q Consensus 249 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 328 (479)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+... ..+... ..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~~~~-----~~ 194 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-----------------------LMAALC-----PH 194 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-----------------------HHTTSC-----TT
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-----------------------hhHHHh-----hh
Confidence 45666666666666666555555566666666666665432100 000000 01
Q ss_pred ccCCccEEEeeCCcceecCch----hhcCCCCCCEEeCCCCccccccCcccCCC---CCCcEEEccCCcccccCCccccC
Q 047549 329 AFQNLVVLGIGNCEIKGQIPT----WLGKLKKLQVLDLGSNQITGPIPGWLGNM---PNLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
.+++|++|++++|+++. ++. .+..+++|++|++++|++.+..|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence 45677777788887762 222 35677888999999998887767666665 68899999999888 5666543
Q ss_pred CccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 402 LPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 402 l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
++|+. |++++|++++ +|. +..+++|+.|++++|+|+
T Consensus 272 -~~L~~---------------------------------------L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 -AKLRV---------------------------------------LDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -SCCSC---------------------------------------EECCSCCCCS-CCC-TTSCCCCSCEECSSTTTS
T ss_pred -CCCCE---------------------------------------EECCCCcCCC-Cch-hhhCCCccEEECcCCCCC
Confidence 34432 6788888884 343 677888999999999875
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=2.4e-24 Score=221.85 Aligned_cols=344 Identities=16% Similarity=0.143 Sum_probs=204.2
Q ss_pred CCCEEEEECCCCCcccccccccc-CCCCCCeeecCCC-cCCCc-----CCCCCCCCEEEcCCcccccCC--CCCCcCCCC
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTG-KLTHLCHLNLSHN-HLSFL-----SPSVPFLSILDFSHNYFRGHC--QLPSGLGNF 121 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-----~~~~~~L~~L~L~~n~l~~~~--~l~~~~~~l 121 (479)
.+++++|+++++.+++..+..+. .+++|++|++++| .++.. ....++|++|++++|.+++.. .++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45899999999998887777775 6999999999998 44431 123489999999999976421 133344578
Q ss_pred CCCcEEEccccc--ccc-CCCccCCCCCCCCEEECCCC-cccccCCccccccCCCCCCCCCCCCEEEccCCc-------C
Q 047549 122 SKLQTFRAGFSY--LSG-SIPDDVSAAASLEDISLPVN-QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS-------L 190 (479)
Q Consensus 122 ~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~-------l 190 (479)
++|++|+++++. +.. .++..+..+++|++|++++| .+.+ ++.. +..+++|++|++..+. +
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~--------~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATL--------LQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHH--------HHHCTTCSEEECSBCCCCCCHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHH--------HhcCCcceEcccccccCccchhhH
Confidence 899999999986 221 11122245799999999998 3333 3332 3456788888865543 2
Q ss_pred ccccchhhhcCCCCCee-eccCCcCccccCccccCCCCCCcEEEccCCcccccC-CccCcCCCCCCEEEccCCcccccC-
Q 047549 191 SGFLPQFLMNCTNLITL-NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF-PLTLTSCMFLTAIRLSGNKIEEQI- 267 (479)
Q Consensus 191 ~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~- 267 (479)
.+ ++..+.++++|+.+ .+...... .++. .+..+++|++|++++|.+++.. +..+..+++|++|++++| +....
T Consensus 255 ~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~-~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l 330 (594)
T 2p1m_B 255 SG-LSVALSGCKELRCLSGFWDAVPA-YLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGL 330 (594)
T ss_dssp HH-HHHHHHTCTTCCEEECCBTCCGG-GGGG-GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred HH-HHHHHhcCCCcccccCCcccchh-hHHH-HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHH
Confidence 22 33456677777777 33332221 2221 2335677777777777765332 222456677777777776 33222
Q ss_pred hhhhhccCCCCEEEccC---------CCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEe
Q 047549 268 SPTILALVSVSYLSINN---------NNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGI 338 (479)
Q Consensus 268 ~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l 338 (479)
+.....+++|+.|++.+ +.++.. ........+++|+.|.+..+.+++....... ..+++|+.|++
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~-~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-----~~~~~L~~L~L 404 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMGCPKLESVLYFCRQMTNAALITIA-----RNRPNMTRFRL 404 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH-HHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-----HHCTTCCEEEE
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHH-HHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-----hhCCCcceeEe
Confidence 22233467777777733 233211 0001112367777777766665543221111 13567777777
Q ss_pred e--C----Ccceec-----CchhhcCCCCCCEEeCCCCccccccCcccCC-CCCCcEEEccCCcccccCCccc-cCCccc
Q 047549 339 G--N----CEIKGQ-----IPTWLGKLKKLQVLDLGSNQITGPIPGWLGN-MPNLFYIDLSYNSISGEFPKEF-CGLPAL 405 (479)
Q Consensus 339 ~--~----n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L 405 (479)
+ + +.+++. ++..+..+++|+.|++++ .+.+..+..+.. +++|++|++++|.+++..+..+ .++++|
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 7 3 344421 122355667777777766 555443334443 6777777777777765544444 456666
Q ss_pred ccccccccc
Q 047549 406 ALQEAKNRA 414 (479)
Q Consensus 406 ~~l~~~~~~ 414 (479)
+.+++++|.
T Consensus 484 ~~L~L~~n~ 492 (594)
T 2p1m_B 484 RKLEIRDCP 492 (594)
T ss_dssp CEEEEESCS
T ss_pred CEEECcCCC
Confidence 666665544
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.3e-23 Score=202.58 Aligned_cols=227 Identities=16% Similarity=0.150 Sum_probs=145.1
Q ss_pred CCCCCCCCEEEccCCcCccccch----hhhcCCCCCeeeccCCcC---ccccCcc------ccCCCCCCcEEEccCCccc
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQ----FLMNCTNLITLNLRINNF---RGDLSAY------NFSTLHNLHTIDLGNNNFT 240 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l---~~~~~~~------~~~~l~~L~~L~l~~n~l~ 240 (479)
+..+++|++|++++|.++...+. .+..+++|++|++++|.+ .+.+|.. .+..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34567888888888888765433 356788888888888643 3333321 1367788888888888887
Q ss_pred c----cCCccCcCCCCCCEEEccCCcccccChhhhh----cc---------CCCCEEEccCCCCCC--CCCccccccCCC
Q 047549 241 G----SFPLTLTSCMFLTAIRLSGNKIEEQISPTIL----AL---------VSVSYLSINNNNLSN--ITGAIGILMGCK 301 (479)
Q Consensus 241 ~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~~--~~~~~~~l~~~~ 301 (479)
+ .+|..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++. ++.....+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 3566677788888888888887654433333 33 788888888887752 222223455667
Q ss_pred CCcEEEccCcccccc-----CCCCccccccccccCCccEEEeeCCcce----ecCchhhcCCCCCCEEeCCCCccccc--
Q 047549 302 NLRMLLLCKIFFHEA-----IPDENQITISSYAFQNLVVLGIGNCEIK----GQIPTWLGKLKKLQVLDLGSNQITGP-- 370 (479)
Q Consensus 302 ~L~~L~l~~n~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~-- 370 (479)
+|+.|++++|.+... .+... ..+++|++|++++|.++ ..+|..+..+++|++|+|++|.+.+.
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGL------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTG------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHh------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 777777777766521 11011 24567777777777774 34566677777777777777777644
Q ss_pred --cCccc--CCCCCCcEEEccCCcccc----cCCccc-cCCcccc
Q 047549 371 --IPGWL--GNMPNLFYIDLSYNSISG----EFPKEF-CGLPALA 406 (479)
Q Consensus 371 --~~~~~--~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~ 406 (479)
++..+ ..+++|++|+|++|.+++ .+|..+ .+++.|+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 34445 336777777777777775 355544 3455554
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=4.7e-23 Score=198.50 Aligned_cols=261 Identities=18% Similarity=0.184 Sum_probs=130.1
Q ss_pred EEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCC----ccCCCCC-CCCEEECCCCcccccCCccccccCCCCCC
Q 047549 101 LDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIP----DDVSAAA-SLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 101 L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
.++++|.+++ .+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +.
T Consensus 3 ~~ls~n~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~----l~ 76 (362)
T 3goz_A 3 YKLTLHPGSN--PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI----LA 76 (362)
T ss_dssp EECCCCTTCC--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH----HH
T ss_pred cccccccchH--HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH----Hh
Confidence 3455555543 333344444446666666666654443 4455555 56666666666655444433221 11
Q ss_pred CC-CCCCEEEccCCcCccccchhhhc----C-CCCCeeeccCCcCccccCccc----cCC-CCCCcEEEccCCcccccC-
Q 047549 176 KL-ANLKSLKLHTNSLSGFLPQFLMN----C-TNLITLNLRINNFRGDLSAYN----FST-LHNLHTIDLGNNNFTGSF- 243 (479)
Q Consensus 176 ~~-~~L~~L~L~~n~l~~~~~~~l~~----l-~~L~~L~l~~n~l~~~~~~~~----~~~-l~~L~~L~l~~n~l~~~~- 243 (479)
.. ++|++|++++|.+++..+..+.. + ++|++|++++|.+. ..+... +.. .++|++|++++|.+++..
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 11 56666666666666544443332 2 56666666666654 222111 222 245666666666555322
Q ss_pred ---CccCcCCC-CCCEEEccCCcccccChhhhhc----c-CCCCEEEccCCCCCCCCCc--cccccCCCCCcEEEccCcc
Q 047549 244 ---PLTLTSCM-FLTAIRLSGNKIEEQISPTILA----L-VSVSYLSINNNNLSNITGA--IGILMGCKNLRMLLLCKIF 312 (479)
Q Consensus 244 ---~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~----l-~~L~~L~L~~n~l~~~~~~--~~~l~~~~~L~~L~l~~n~ 312 (479)
+..+...+ +|++|++++|.+++..+..+.. + ++|+.|++++|.++..... ...+..
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~------------- 222 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS------------- 222 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-------------
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-------------
Confidence 22223333 5666666666665544433332 2 3555555555555431100 001111
Q ss_pred ccccCCCCccccccccccCCccEEEeeCCcceecCc----hhhcCCCCCCEEeCCCCccccc-------cCcccCCCCCC
Q 047549 313 FHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP----TWLGKLKKLQVLDLGSNQITGP-------IPGWLGNMPNL 381 (479)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L 381 (479)
..++|++|++++|++++..+ ..+..+++|++|++++|.+.+. ++..+..+++|
T Consensus 223 ----------------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 223 ----------------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp ----------------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred ----------------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 12356666666666654322 2334556677777776663321 23345666777
Q ss_pred cEEEccCCcccccCCc
Q 047549 382 FYIDLSYNSISGEFPK 397 (479)
Q Consensus 382 ~~L~L~~N~l~~~~p~ 397 (479)
++||+++|++....+.
T Consensus 287 ~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 287 ILVDKNGKEIHPSHSI 302 (362)
T ss_dssp EEECTTSCBCCGGGCH
T ss_pred EEEecCCCcCCCcchH
Confidence 7777777777655443
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.4e-21 Score=176.92 Aligned_cols=195 Identities=19% Similarity=0.226 Sum_probs=105.8
Q ss_pred CCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccc-cccCCCccCCCCCCCCEEECCC
Q 047549 77 HLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY-LSGSIPDDVSAAASLEDISLPV 155 (479)
Q Consensus 77 ~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~ 155 (479)
+|++|++++|+++++++ ..+..+++|++|++++|. ++...+..|.++++|++|++++
T Consensus 32 ~l~~L~l~~n~l~~i~~----------------------~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS----------------------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TCCEEEEESCCCSEECT----------------------TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred cccEEEEeCCcceEECH----------------------HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 56666666666654433 244555556666666554 5433334455555666666655
Q ss_pred -CcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC---eeeccCC-cCccccCccccCCCCCCc
Q 047549 156 -NQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI---TLNLRIN-NFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 156 -n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~ 230 (479)
|.++...+.. |..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+. .++...|..+++|+
T Consensus 90 ~n~l~~i~~~~--------f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 90 TRNLTYIDPDA--------LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNET 158 (239)
T ss_dssp ETTCCEECTTS--------EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSE
T ss_pred CCCeeEcCHHH--------hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcce
Confidence 5555433332 3345556666666665554 333 55555555 6666666 554 44444455666666
Q ss_pred -EEEccCCcccccCCccCcCCCCCCEEEccCCc-ccccChhhhhcc-CCCCEEEccCCCCCCCCCccccccCCCCCcEEE
Q 047549 231 -TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNK-IEEQISPTILAL-VSVSYLSINNNNLSNITGAIGILMGCKNLRMLL 307 (479)
Q Consensus 231 -~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~ 307 (479)
+|++++|.++ .+|......++|+.|++++|+ +++..+..|..+ ++|+.|++++|+++.++.. .+++|+.|+
T Consensus 159 ~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-----~~~~L~~L~ 232 (239)
T 2xwt_C 159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-----GLEHLKELI 232 (239)
T ss_dssp EEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-----TCTTCSEEE
T ss_pred eEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-----HhccCceee
Confidence 6666666665 333322222566666666663 665555556666 6666666666666655431 344555555
Q ss_pred ccC
Q 047549 308 LCK 310 (479)
Q Consensus 308 l~~ 310 (479)
+++
T Consensus 233 l~~ 235 (239)
T 2xwt_C 233 ARN 235 (239)
T ss_dssp CTT
T ss_pred ccC
Confidence 543
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=2.5e-20 Score=169.80 Aligned_cols=193 Identities=21% Similarity=0.240 Sum_probs=123.6
Q ss_pred CCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCc
Q 047549 38 TDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSG 117 (479)
Q Consensus 38 ~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~ 117 (479)
.+|+.|.|..|.. ..+++++++++++. +|..+. +++++|++++|.+++. .+..
T Consensus 2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~----------------------~~~~ 54 (251)
T 3m19_A 2 KTCETVTGCTCNE--GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATL----------------------SDAT 54 (251)
T ss_dssp --CHHHHSSEEEG--GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCC----------------------CTTT
T ss_pred ccCCCCCceEcCC--CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCcc----------------------CHhH
Confidence 3577888888842 33466777766653 344332 3555555555554433 2335
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV--------FDHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--------TTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH--------hcccCCCCEEEcCCCcCCCcChhH
Confidence 667777777777777777666666777777777777777776544432 445677777777777777655555
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
+..+++|+.|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 127 ~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666777777777777776 44444566677777777777777655555666677777777777776553
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=2.1e-20 Score=170.37 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=126.2
Q ss_pred CCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 98 LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 98 L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
.++++++++.++ .+|..+. +.++.|++++|.+.+..+..+.++++|++|++++|.+++..+.. +..+
T Consensus 16 ~~~l~~~~~~l~---~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l 82 (251)
T 3m19_A 16 KKEVDCQGKSLD---SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV--------FDDL 82 (251)
T ss_dssp GTEEECTTCCCS---SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--------TTTC
T ss_pred CeEEecCCCCcc---ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH--------hccC
Confidence 445555666555 4565544 57888888888888766667788888888888888877655543 4557
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 257 (479)
++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 77888888888887666667777778888888887776 45544567777777777777777755555677777777777
Q ss_pred ccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 258 LSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 258 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+++..+..+..+++|+.|++++|.+.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 7777777766666667777777777777665
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.6e-22 Score=192.84 Aligned_cols=255 Identities=17% Similarity=0.247 Sum_probs=142.2
Q ss_pred CCCEEEcCCcccccCCCCCCcCCCC--CCCcEEEccccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPSGLGNF--SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLN 173 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~ 173 (479)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..
T Consensus 48 ~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-------- 113 (336)
T 2ast_B 48 LWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-------- 113 (336)
T ss_dssp TSSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH--------
T ss_pred hheeeccccccCC-----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH--------
Confidence 4677777777654 2334444 6677777777777654443 44567777777777665543 3322
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC-cCccc-cCccccCCCCCCcEEEccCC-ccccc-CCccCcC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN-NFRGD-LSAYNFSTLHNLHTIDLGNN-NFTGS-FPLTLTS 249 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~ 249 (479)
+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++ ..+..+++|++|++++| .+++. ++..+..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 344566777777776666556666666666666666666 44421 22 13445566666666666 55532 3444455
Q ss_pred CC-CCCEEEccCC--ccc-ccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccc
Q 047549 250 CM-FLTAIRLSGN--KIE-EQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITI 325 (479)
Q Consensus 250 ~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 325 (479)
++ +|++|++++| .++ +..+..+..+++|+.|++++|.. +++..+...
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-------------------------l~~~~~~~l---- 243 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-------------------------LKNDCFQEF---- 243 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-------------------------CCGGGGGGG----
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc-------------------------CCHHHHHHH----
Confidence 55 6666666665 233 22344445555555555555541 222211111
Q ss_pred cccccCCccEEEeeCCc-ceecCchhhcCCCCCCEEeCCCCccccccCcccCCC-CCCcEEEccCCcccccCCccccC
Q 047549 326 SSYAFQNLVVLGIGNCE-IKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNM-PNLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 326 ~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
..+++|++|++++|. +.......+..+++|+.|++++| +.+. .+..+ .++..|++++|++++..|..+..
T Consensus 244 --~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 244 --FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp --GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred --hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 134566666666663 32222234667778888888877 3321 22222 23556667888888777776654
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.6e-20 Score=176.31 Aligned_cols=192 Identities=28% Similarity=0.400 Sum_probs=104.4
Q ss_pred CCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCcccc
Q 047549 144 AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223 (479)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 223 (479)
.+++|++|+++++.+... + . +..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++ .+
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~--------~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~--~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-G--------VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS--AI 103 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-T--------GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG--GG
T ss_pred HcCCcCEEEeeCCCccCc-h-h--------hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch--hh
Confidence 345566666665555431 1 1 3345555666666655554322 555555555555555554 222 34
Q ss_pred CCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCC
Q 047549 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNL 303 (479)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L 303 (479)
..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++++. +.
T Consensus 104 ~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~----- 170 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LA----- 170 (308)
T ss_dssp TTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GT-----
T ss_pred cCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hc-----
Confidence 455555555555555543 22 24455555555555555544322 4445555555555554443221 22
Q ss_pred cEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcE
Q 047549 304 RMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY 383 (479)
Q Consensus 304 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 383 (479)
.+++|+.|++++|++++..+ +..+++|++|++++|++.+.. .+..+++|++
T Consensus 171 -------------------------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~ 221 (308)
T 1h6u_A 171 -------------------------NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221 (308)
T ss_dssp -------------------------TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred -------------------------CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCE
Confidence 45566666666666664322 666777777777777776443 2667777777
Q ss_pred EEccCCccc
Q 047549 384 IDLSYNSIS 392 (479)
Q Consensus 384 L~L~~N~l~ 392 (479)
|++++|+++
T Consensus 222 L~l~~N~i~ 230 (308)
T 1h6u_A 222 VTLTNQTIT 230 (308)
T ss_dssp EEEEEEEEE
T ss_pred EEccCCeee
Confidence 777777776
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.3e-21 Score=172.50 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=101.1
Q ss_pred CCCEEEccCCcCccccchhhhcCCCCCeeeccCCc-CccccCccccCCCCCCcEEEccC-CcccccCCccCcCCCCCCEE
Q 047549 179 NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN-FRGDLSAYNFSTLHNLHTIDLGN-NNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L 256 (479)
++++|++++|++++..+..+..+++|++|++++|. +. .++...|..+++|++|++++ |.+++..+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666665555556666666666666664 44 44444555566666666665 55554444455555556666
Q ss_pred EccCCcccccChhhhhccCCCC---EEEccCC-CCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCC
Q 047549 257 RLSGNKIEEQISPTILALVSVS---YLSINNN-NLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQN 332 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 332 (479)
++++|.+++ +|. +..+++|+ +|++++| .++.++. ..+. .+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~------------------------------~l~~ 156 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NAFQ------------------------------GLCN 156 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TTTT------------------------------TTBS
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc--cccc------------------------------chhc
Confidence 666655554 222 44444444 5555555 4443332 1122 3455
Q ss_pred cc-EEEeeCCcceecCchhhcCCCCCCEEeCCCCc-cccccCcccCCC-CCCcEEEccCCcccccCCc
Q 047549 333 LV-VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ-ITGPIPGWLGNM-PNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 333 L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~ 397 (479)
|+ +|++++|+++...+..+.. ++|++|++++|+ +++..+..|..+ ++|++|++++|++++..+.
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred ceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 66 6666666666322333333 566666666664 664445556666 6667777776666643333
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.2e-20 Score=174.35 Aligned_cols=170 Identities=20% Similarity=0.318 Sum_probs=86.3
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
++|++|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++. + . +.
T Consensus 41 ~~L~~L~l~~~~i~---~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~--------~~ 104 (308)
T 1h6u_A 41 DGITTLSAFGTGVT---TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-A--------IA 104 (308)
T ss_dssp HTCCEEECTTSCCC---CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-G--------GT
T ss_pred CCcCEEEeeCCCcc---Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-h--------hc
Confidence 34444444444443 233 34555566666666665552 222 55555666666665555432 1 1 34
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++. + .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|+.
T Consensus 105 ~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~ 177 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTT 177 (308)
T ss_dssp TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCc--cccCCCCccEEEccCCcCCCC-hh-hcCCCCCCE
Confidence 455566666666655542 2 2555555666666555554 222 144555555555555555532 22 455555555
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCCCC
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI 290 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 290 (479)
|++++|.+++..+ +..+++|+.|++++|+++++
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 5555555554322 45555555555555555433
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.7e-20 Score=189.03 Aligned_cols=207 Identities=23% Similarity=0.242 Sum_probs=167.9
Q ss_pred CCCCCCCCc-----cceeE-EeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCc
Q 047549 33 NWSFSTDCC-----LWEGI-KCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHN 106 (479)
Q Consensus 33 ~w~~~~~~c-----~w~~v-~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n 106 (479)
.|..+.++| .|.++ .|. .++++.|+++++++++ +|..+ +++|++|++++|.++.++...++|++|++++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLPELPASLEYLDACDN 110 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred HHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccccccCCCCEEEccCC
Confidence 455556667 68888 675 3579999999999987 67666 38999999999999987744489999999999
Q ss_pred ccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEcc
Q 047549 107 YFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLH 186 (479)
Q Consensus 107 ~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~ 186 (479)
.++ .+|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 111 ~l~---~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----------~l~~L~~L~Ls 168 (571)
T 3cvr_A 111 RLS---TLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----------LPTSLEVLSVR 168 (571)
T ss_dssp CCS---CCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----------CCTTCCEEECC
T ss_pred CCC---Ccch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----------cCCCcCEEECC
Confidence 998 4777 554 89999999999985 666 68899999999999886 343 25789999999
Q ss_pred CCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCC-------cEEEccCCcccccCCccCcCCCCCCEEEcc
Q 047549 187 TNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNL-------HTIDLGNNNFTGSFPLTLTSCMFLTAIRLS 259 (479)
Q Consensus 187 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 259 (479)
+|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+++
T Consensus 169 ~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 169 NNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp SSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred CCCCCC-cch-hh--CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence 999997 555 55 89999999999998 6765 332 66 99999999998 678888889999999999
Q ss_pred CCcccccChhhhhccC
Q 047549 260 GNKIEEQISPTILALV 275 (479)
Q Consensus 260 ~n~l~~~~~~~~~~l~ 275 (479)
+|.+++..|..+..+.
T Consensus 239 ~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSSCCHHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHhh
Confidence 9999988888877654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.3e-20 Score=176.80 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=113.2
Q ss_pred CCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccCCC-ccCCCCCCCCE-EECCCCcccccCCccccccCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSIP-DDVSAAASLED-ISLPVNQLSGAISNGVVNLTSLN 173 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~l~ 173 (479)
++++|+|++|.++ .+|. +|.++++|++|++++|++.+.++ ..|.+++++++ +.+..|+++...+..
T Consensus 31 ~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~-------- 99 (350)
T 4ay9_X 31 NAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA-------- 99 (350)
T ss_dssp TCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS--------
T ss_pred CCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh--------
Confidence 3444455555444 3443 46677777777777777654444 34566666664 444456666554443
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccC-CcCccccCccccCCCC-CCcEEEccCCcccccCCccCcCCC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRI-NNFRGDLSAYNFSTLH-NLHTIDLGNNNFTGSFPLTLTSCM 251 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~ 251 (479)
|..+++|++|++++|.++...+..+....++..+++.+ +.+. .++...|..+. .++.|++++|.++ .++.......
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT 177 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc-CCChhhcccc
Confidence 45567777777777777765555555556666677654 3443 45544555543 5777777777777 3444444556
Q ss_pred CCCEEEccC-CcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 252 FLTAIRLSG-NKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 252 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
+|+.+++++ |.++.+.+..|..+++|++|++++|+++.+|.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 677777764 56666555667777788888888877776654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=6.2e-20 Score=175.75 Aligned_cols=201 Identities=17% Similarity=0.101 Sum_probs=112.5
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcE-EEccCCcccccCCccCcCCCCCCEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT-IDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+++++|++++|+++...+.+|.++++|++|++++|.+.+.++...|.+++++.+ +.+..|+++...|..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 455666666666664444455666666666666666544455445555555544 3334455554445555555666666
Q ss_pred EccCCcccccChhhhhccCCCCEEEccC-CCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccE
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINN-NNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~ 335 (479)
++++|.+....+..+....++..+++.+ +.+..++. ..+. .....++.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~--------------------------~~f~-----~~~~~l~~ 158 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--------------------------NSFV-----GLSFESVI 158 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT--------------------------TSST-----TSBSSCEE
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccc--------------------------cchh-----hcchhhhh
Confidence 6666655554444444444444555433 23332221 1111 11235677
Q ss_pred EEeeCCcceecCchhhcCCCCCCEEeCCC-CccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccc
Q 047549 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGS-NQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEA 410 (479)
Q Consensus 336 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~ 410 (479)
|++++|+++. ++.......+|+++++++ |.++...++.|..+++|++|++++|+++...+..|.+++.|+.+..
T Consensus 159 L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 159 LWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp EECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred hccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC
Confidence 7777777774 333333456677777764 5555444456777778888888888877555556677776665544
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=8e-19 Score=155.02 Aligned_cols=182 Identities=23% Similarity=0.238 Sum_probs=99.3
Q ss_pred ccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCC
Q 047549 41 CLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGN 120 (479)
Q Consensus 41 c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~ 120 (479)
|.|.++.|... +++ .+|..+ .++|++|++++|++++.++ ..+..
T Consensus 7 C~~~~v~c~~~-----------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~----------------------~~~~~ 50 (208)
T 2o6s_A 7 CSGTTVECYSQ-----------GRT-SVPTGI--PAQTTYLDLETNSLKSLPN----------------------GVFDE 50 (208)
T ss_dssp EETTEEECCSS-----------CCS-SCCSCC--CTTCSEEECCSSCCCCCCT----------------------TTTTT
T ss_pred ECCCEEEecCC-----------Ccc-CCCCCC--CCCCcEEEcCCCccCcCCh----------------------hhhcc
Confidence 67888777532 222 223322 3466667776666654433 23445
Q ss_pred CCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 121 FSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 121 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
+++|++|++++|++++..+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~ 122 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV--------FDKLTQLKELALNTNQLQSLPDGVFDK 122 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH--------hcCccCCCEEEcCCCcCcccCHhHhcc
Confidence 555666666666555433344455566666666666555333322 344556666666666666544444555
Q ss_pred CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhcc
Q 047549 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILAL 274 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 274 (479)
+++|+.|++++|.+. .++...+..+++|++|++++|.+.+ .+++|+.|+++.|.+++.+|..++.+
T Consensus 123 l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 666666666666665 3443345556666666666665442 23455666666666666665554433
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=7.8e-19 Score=155.10 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=61.8
Q ss_pred EEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC
Q 047549 126 TFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI 205 (479)
Q Consensus 126 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 205 (479)
.++.+++.++ .+|..+ .++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..+++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGV--------FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTT--------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhh--------hcccccCcEEECCCCccCccChhhcCCCCCcC
Confidence 4455555444 333322 234555555555544322221 23344455555555544433333344444444
Q ss_pred eeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCC
Q 047549 206 TLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNN 285 (479)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (479)
+|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 80 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 80 YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 4444444444 233223344444444444444444333333334444444444444444333333333333333333333
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=5.8e-19 Score=177.85 Aligned_cols=134 Identities=22% Similarity=0.309 Sum_probs=70.6
Q ss_pred CCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCC
Q 047549 147 SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTL 226 (479)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 226 (479)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.+++ ++. +..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l----------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL----------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA- 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC----------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT-
T ss_pred CccEEEeCCCCCCc-cCHhH----------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc-
Confidence 56666666666654 33321 245666666666666 334 334566666666666653 443 222
Q ss_pred CCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEE
Q 047549 227 HNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRML 306 (479)
Q Consensus 227 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L 306 (479)
+|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.++.++. +. ++|+.|
T Consensus 121 -~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~----l~--~~L~~L 185 (571)
T 3cvr_A 121 -SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE----LP--ESLEAL 185 (571)
T ss_dssp -TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CC--TTCCEE
T ss_pred -CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch----hh--CCCCEE
Confidence 56666666666653 443 44556666666666555 222 34555556665555554443 11 445555
Q ss_pred EccCcccc
Q 047549 307 LLCKIFFH 314 (479)
Q Consensus 307 ~l~~n~~~ 314 (479)
++++|.+.
T Consensus 186 ~Ls~N~L~ 193 (571)
T 3cvr_A 186 DVSTNLLE 193 (571)
T ss_dssp ECCSSCCS
T ss_pred ECcCCCCC
Confidence 55555444
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=8.2e-18 Score=149.66 Aligned_cols=143 Identities=19% Similarity=0.193 Sum_probs=78.9
Q ss_pred CEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCc
Q 047549 254 TAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L 333 (479)
+.+++++|.++.+ |..+ ...++.|++++|.++.++.. ..+..+++|+.|++++|.+.+..+..+. .+++|
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~------~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEAT-GIFKKLPQLRKINFSNNKITDIEEGAFE------GASGV 83 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCC-CCGGGCTTCCEEECCSSCCCEECTTTTT------TCTTC
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCch-hhhccCCCCCEEECCCCcCCEECHHHhC------CCCCC
Confidence 4677777777653 3332 23456777777776654211 2244555666666666655544333222 44555
Q ss_pred cEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccc
Q 047549 334 VVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406 (479)
Q Consensus 334 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 406 (479)
++|++++|++++..+..|..+++|++|++++|++.+..|..|..+++|++|++++|++++..|..|..+++|+
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 6666666655554455555555666666666665555555555555566666666665555555555555553
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.9e-17 Score=147.09 Aligned_cols=163 Identities=23% Similarity=0.224 Sum_probs=92.0
Q ss_pred CCCCCCCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccC
Q 047549 32 LNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGH 111 (479)
Q Consensus 32 ~~w~~~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~ 111 (479)
..|..+...|.|.++.|.. ++++ .+|..+. ++|++|++++|.+++.
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~-----------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-------------------- 55 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRS-----------KRHA-SVPAGIP--TNAQILYLHDNQITKL-------------------- 55 (229)
T ss_dssp -CCCCTTCEEETTEEECTT-----------SCCS-SCCSCCC--TTCSEEECCSSCCCCC--------------------
T ss_pred hccCCCCCEEeCCEeEccC-----------CCcC-ccCCCCC--CCCCEEEcCCCccCcc--------------------
Confidence 4444588899999998863 2232 3343332 4555555555555433
Q ss_pred CCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCc
Q 047549 112 CQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191 (479)
Q Consensus 112 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~ 191 (479)
.|..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+.. |..+++|++|++++|.++
T Consensus 56 --~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--------~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 56 --EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV--------FDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCC
T ss_pred --CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH--------hCcchhhCeEeccCCccc
Confidence 2345666677777777777766444444566666666666666665443332 344566666666666666
Q ss_pred cccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccc
Q 047549 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 240 (479)
Q Consensus 192 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (479)
.+|..+..+++|+.|++++|.+. .++...+..+++|++|++++|++.
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred -ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 34555555666666666666555 333334445555555555555443
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6.5e-18 Score=157.11 Aligned_cols=171 Identities=22% Similarity=0.272 Sum_probs=95.7
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCE
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSY 279 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 279 (479)
.+++|+.|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcc-cCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3444555555555444 232 24444555555555555543222 44555555555555555442 22455555555
Q ss_pred EEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCE
Q 047549 280 LSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQV 359 (479)
Q Consensus 280 L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 359 (479)
|++++|.++.+ ..+..+++|+.|++++|.+.+. ... ..+++|+.|++++|++++..+ +..+++|+.
T Consensus 117 L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l------~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 117 LSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVL------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp EECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--GGG------GGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc--hhh------ccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 55555555543 2244455555555555555442 111 245677777777777775433 777778888
Q ss_pred EeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 360 LDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 360 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 183 L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 8888887774 33 37777788888888887774
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=7e-18 Score=156.90 Aligned_cols=168 Identities=21% Similarity=0.266 Sum_probs=85.0
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. +. +.
T Consensus 46 ~~L~~L~l~~~~i~---~~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~---------l~ 109 (291)
T 1h6t_A 46 NSIDQIIANNSDIK---SVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDL-SS---------LK 109 (291)
T ss_dssp HTCCEEECTTSCCC---CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCG-GG---------GT
T ss_pred CcccEEEccCCCcc---cCh-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCC-hh---------hc
Confidence 34445555555444 222 245556666666666666532 22 55566666666666655431 11 34
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++. ..+..+++|+.|++++|.+. .+ ..+..+++|++|++++|.+++..+ +..+++|+.
T Consensus 110 ~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~-~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC-CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC-cc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 455566666666655532 23555555555555555554 22 134455555555555555543322 445555555
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
|++++|.+++. + .+..+++|+.|++++|.++
T Consensus 183 L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 183 LYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred EECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 55555555442 1 2444555555555555444
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.4e-17 Score=146.69 Aligned_cols=111 Identities=20% Similarity=0.239 Sum_probs=57.8
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++..|..|..+++|++|++++|.+. .++...|..+++|++|++++|.+++..|..+..+++|+.
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 3444555555555555444445555555555555555554 344334455555555555555555444455555555555
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCC
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (479)
|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55555555554444455555555555555544
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=9.5e-18 Score=161.17 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=89.9
Q ss_pred CCEEEcCCcccccCCCCCCcCC-CCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 98 LSILDFSHNYFRGHCQLPSGLG-NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 98 L~~L~L~~n~l~~~~~l~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
+++|+|++|.+++ ..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.++...+.. |..
T Consensus 41 l~~L~Ls~N~l~~--l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~ 110 (361)
T 2xot_A 41 TALLDLSHNNLSR--LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL--------FSD 110 (361)
T ss_dssp CSEEECCSSCCCE--ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--------TTT
T ss_pred CCEEECCCCCCCc--cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH--------hCC
Confidence 4444444444442 1122344 6667777777777776555556666777777777777666544332 445
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCcccc---CCCCCCcEEEccCCcccccCCccCcCCCC-
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF---STLHNLHTIDLGNNNFTGSFPLTLTSCMF- 252 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~- 252 (479)
+++|++|++++|.++...+..|..+++|+.|++++|.+. .++...+ ..+++|+.|++++|.++...+..+..++.
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence 666777777777766655666666667777777776665 4444333 34566666666666665333334444444
Q ss_pred -CCEEEccCCccc
Q 047549 253 -LTAIRLSGNKIE 264 (479)
Q Consensus 253 -L~~L~l~~n~l~ 264 (479)
++.|++++|++.
T Consensus 190 ~l~~l~l~~N~~~ 202 (361)
T 2xot_A 190 VKNGLYLHNNPLE 202 (361)
T ss_dssp HHTTEECCSSCEE
T ss_pred hcceEEecCCCcc
Confidence 355666666554
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.5e-17 Score=146.52 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=77.3
Q ss_pred CEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCC-ccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 99 SILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIP-DDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 99 ~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
+++++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+.. |..+
T Consensus 14 ~~l~~s~n~l~---~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~--------~~~l 80 (220)
T 2v70_A 14 TTVDCSNQKLN---KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA--------FEGA 80 (220)
T ss_dssp TEEECCSSCCS---SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT--------TTTC
T ss_pred CEeEeCCCCcc---cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH--------hCCC
Confidence 45666666665 3554432 234566666666554433 23455555555555555555443332 3344
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 257 (479)
++|++|++++|.+++..+..|..+++|++|++++|.+.+ ++...+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 555555555555555444445555555555555555542 2222444555555555555555544444455555555555
Q ss_pred ccCCccc
Q 047549 258 LSGNKIE 264 (479)
Q Consensus 258 l~~n~l~ 264 (479)
+++|.+.
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 5555444
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=2e-17 Score=158.92 Aligned_cols=176 Identities=21% Similarity=0.196 Sum_probs=136.9
Q ss_pred CEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCC-CCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 99 SILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVS-AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 99 ~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
++++++++.++ .+|..+. +.++.|++++|.+++..+..+. ++++|++|++++|.+++..+.. |..+
T Consensus 21 ~~l~c~~~~l~---~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~--------~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLP---NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--------FVPV 87 (361)
T ss_dssp TEEECCSSCCS---SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT--------TTTC
T ss_pred CEEEeCCCCcC---ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh--------ccCC
Confidence 45566666665 5666543 4588999999999877677776 8899999999999988766554 5668
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccC---cCCCCCC
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTL---TSCMFLT 254 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~ 254 (479)
++|++|++++|.++...+..|..+++|+.|++++|.+. .++...|..+++|++|++++|.+++..+..+ ..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 88999999999998777778888999999999999987 4544578888999999999999884333334 5688899
Q ss_pred EEEccCCcccccChhhhhccCC--CCEEEccCCCCC
Q 047549 255 AIRLSGNKIEEQISPTILALVS--VSYLSINNNNLS 288 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~ 288 (479)
.|++++|.++...+..+..++. ++.|++++|.+.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999999998877777777776 478888888775
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.9e-17 Score=168.67 Aligned_cols=171 Identities=23% Similarity=0.315 Sum_probs=87.7
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|+.|++++|.+... + .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+++ ++ .+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 345556666666655532 2 3555666666666666555 2321 4555566666666665552 22 4555555666
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccE
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~ 335 (479)
|++++|.+.+. +.+..+++|+.|+|++|.++.+ ..+..++ +|+.
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~------------------------------~L~~ 157 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLT------------------------------KLDT 157 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCT------------------------------TCSE
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccC------------------------------CCCE
Confidence 66666655542 2355555555555555555533 2234444 4555
Q ss_pred EEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 336 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
|++++|.+.+..| +..+++|+.|+|++|++.+. ..+..+++|+.|+|++|++++
T Consensus 158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred EECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5555555543333 44555555555555555432 234455555555555555543
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=4.5e-17 Score=144.86 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=70.2
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT 202 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 202 (479)
+++.|++++|.+.+..+..|..+++|++|++++|.+++..|.. |..+++|++|++++|.++...+..|..++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~--------~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--------FQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT--------TTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH--------hhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 4444455554444333334444555555555555544443332 33345555555555555544444445555
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE 265 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (479)
+|++|++++|.+. .++...|..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 105 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 105 SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 5555555555555 2332355556666666666666654444455666666666666666543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.9e-17 Score=168.65 Aligned_cols=151 Identities=24% Similarity=0.306 Sum_probs=72.2
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+++. ..
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~---------~l~~l~~L~~L~Ls~N~l~~l--~~ 126 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S---------SLKDLKKLKSLSLEHNGISDI--NG 126 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T---------TSTTCTTCCEEECTTSCCCCC--GG
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h---------hhccCCCCCEEEecCCCCCCC--cc
Confidence 4444555555555554442221 44455555555555544431 1 033445555555555555432 23
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+..+++|+.|++++|.+. .+ ..+..+++|+.|+|++|.+++..| +..+++|+.|++++|.+++. +.+..+++|
T Consensus 127 l~~l~~L~~L~Ls~N~l~-~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L 199 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKIT-DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNL 199 (605)
T ss_dssp GGGCTTCSEEECCSSCCC-CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTC
T ss_pred ccCCCccCEEECCCCccC-Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCC
Confidence 445555555555555554 22 134455555555555555553333 44555555555555555442 234455555
Q ss_pred CEEEccCCCCCC
Q 047549 278 SYLSINNNNLSN 289 (479)
Q Consensus 278 ~~L~L~~n~l~~ 289 (479)
+.|++++|.+..
T Consensus 200 ~~L~L~~N~l~~ 211 (605)
T 1m9s_A 200 DVLELFSQECLN 211 (605)
T ss_dssp SEEECCSEEEEC
T ss_pred CEEEccCCcCcC
Confidence 555555555543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1.5e-16 Score=142.41 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=98.4
Q ss_pred CCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
+.+.++.+++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++...+.. |..
T Consensus 20 s~~~v~c~~~~l~---~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~--------~~~ 86 (229)
T 3e6j_A 20 SGTTVDCRSKRHA---SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV--------FDS 86 (229)
T ss_dssp ETTEEECTTSCCS---SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTT
T ss_pred eCCEeEccCCCcC---ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh--------ccc
Confidence 3455555555555 4555443 67777777777777666667777777777777777765433332 455
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEE
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+++|++|++++|.+++..+..+..+++|+.|++++|.+. .++. .+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 667777777777777655555666677777777777666 5553 45566666666666666664444455666666666
Q ss_pred EccCCcccc
Q 047549 257 RLSGNKIEE 265 (479)
Q Consensus 257 ~l~~n~l~~ 265 (479)
++++|.+..
T Consensus 165 ~l~~N~~~c 173 (229)
T 3e6j_A 165 YLFGNPWDC 173 (229)
T ss_dssp ECTTSCBCT
T ss_pred EeeCCCccC
Confidence 666666654
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.1e-17 Score=141.53 Aligned_cols=149 Identities=11% Similarity=0.191 Sum_probs=78.9
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
++|++|++++|.++ .+| .+..+++|++|++++|.+. . +..+..+++|++|++++|.+++..+.. +.
T Consensus 44 ~~L~~L~l~~n~i~---~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~--------l~ 109 (197)
T 4ezg_A 44 NSLTYITLANINVT---DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPN--------LS 109 (197)
T ss_dssp HTCCEEEEESSCCS---CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCC--------CT
T ss_pred CCccEEeccCCCcc---ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChh--------hc
Confidence 34444444444444 344 4555666666666666443 2 234555666666666666655443433 34
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc-CccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN-FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
.+++|++|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~ 184 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLN 184 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCC
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCC
Confidence 45666666666666665555556666666666666665 33 333 34555555555555555543 22 344455555
Q ss_pred EEEccCCcc
Q 047549 255 AIRLSGNKI 263 (479)
Q Consensus 255 ~L~l~~n~l 263 (479)
.|++++|.+
T Consensus 185 ~L~l~~N~i 193 (197)
T 4ezg_A 185 QLYAFSQTI 193 (197)
T ss_dssp EEEECBC--
T ss_pred EEEeeCccc
Confidence 555555544
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.1e-17 Score=151.21 Aligned_cols=150 Identities=29% Similarity=0.383 Sum_probs=83.2
Q ss_pred CCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCC
Q 047549 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNL 303 (479)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L 303 (479)
..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++++.. .. ++|
T Consensus 38 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~----~~-~~L 108 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI----PS-ACL 108 (263)
T ss_dssp HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTC----CC-SSC
T ss_pred hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcc----cc-Ccc
Confidence 33444444444444444 222 34444555555555555544322 44555555555555555544321 11 555
Q ss_pred cEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcE
Q 047549 304 RMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY 383 (479)
Q Consensus 304 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 383 (479)
+.|++++|.+.+. + .. ..+++|++|++++|++++. + .+..+++|+.|++++|++.+. ..+..+++|++
T Consensus 109 ~~L~L~~N~l~~~-~-~l------~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 109 SRLFLDNNELRDT-D-SL------IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp CEEECCSSCCSBS-G-GG------TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred cEEEccCCccCCC-h-hh------cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 5555555555442 1 01 2456677777777777643 3 567777777777777777754 55677777777
Q ss_pred EEccCCccccc
Q 047549 384 IDLSYNSISGE 394 (479)
Q Consensus 384 L~L~~N~l~~~ 394 (479)
|++++|+++..
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 77777777744
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2.4e-16 Score=137.71 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=90.9
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
..+++|++|++++|.++ .++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34567777888877777 334 5777788888888888664 332 567788888888888888776677788888888
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCC-CCCCCCccccccCCCCCcEEEccCccc
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNN-LSNITGAIGILMGCKNLRMLLLCKIFF 313 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~~~~L~~L~l~~n~~ 313 (479)
+|++++|.+++..+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCC
Confidence 88888888877777778888888888888886 65442 233444444444444433
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=7e-17 Score=147.75 Aligned_cols=168 Identities=23% Similarity=0.304 Sum_probs=101.9
Q ss_pred CCCCCeeecCCCcCCCcCC--CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEE
Q 047549 75 LTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDIS 152 (479)
Q Consensus 75 l~~L~~L~L~~n~l~~~~~--~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 152 (479)
+.++..++++.+.+++.+. .+++|++|++++|.++ .++ .+..+++|++|++++|.+++. +. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~---~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC---CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc---cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 4445556666666655441 1156666666666665 344 566677777777777777633 33 66677777777
Q ss_pred CCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEE
Q 047549 153 LPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232 (479)
Q Consensus 153 l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 232 (479)
+++|.+++..+ +.. ++|++|++++|.+++. ..+..+++|+.|++++|.++ .++ .+..+++|++|
T Consensus 92 L~~N~l~~l~~----------~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L 155 (263)
T 1xeu_A 92 VNRNRLKNLNG----------IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVL 155 (263)
T ss_dssp CCSSCCSCCTT----------CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEE
T ss_pred CCCCccCCcCc----------ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEE
Confidence 77776664221 112 6677777777776643 24666667777777777665 333 45566666666
Q ss_pred EccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 233 DLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 233 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
++++|.+++. ..+..+++|+.|++++|.+...
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 6666666644 4456666666666666666553
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=5.2e-18 Score=177.10 Aligned_cols=253 Identities=14% Similarity=0.129 Sum_probs=104.7
Q ss_pred cChhhHHHHHHhHhcCCCC----CCCCCC-CCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeee----
Q 047549 12 CNQIDQETLLSLNFNASNP----PLNWSF-STDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLN---- 82 (479)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~----~~~w~~-~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~---- 82 (479)
..+.++.++.++..+.... ...|.. ....+.|.++.+.. ++++.|+|.++.+... +..+.....|+.+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDED 206 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-CccceEEeeCCCCCcc-hhhHhhcCccCcccccCc
Confidence 4445667777777664322 245643 34456888777654 6799999988887653 33332222222222
Q ss_pred -cCCCcCCCcC---CCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcc
Q 047549 83 -LSHNHLSFLS---PSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQL 158 (479)
Q Consensus 83 -L~~n~l~~~~---~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 158 (479)
++.|.+...+ ...+.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|.+
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~---~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF---NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS---CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC---CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 2223222111 12267778888888776 56776667778888888888777 7777777778888888888877
Q ss_pred cccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCC-CCCcEEEccCC
Q 047549 159 SGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTL-HNLHTIDLGNN 237 (479)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n 237 (479)
+ .+|.. +..+++|++|+|++|.++ .+|..|..+++|+.|++++|.+.+.++. .+..+ .....+++++|
T Consensus 283 ~-~lp~~--------~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 283 T-SLPAE--------LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK-ILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp S-SCCSS--------GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH-HHHHHHHHHHHHHHHHC
T ss_pred C-ccChh--------hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH-HHhhcchhhhHHhhccC
Confidence 7 44554 345677788888888776 4566677777888888888877755443 22221 11223566777
Q ss_pred cccccCCccCcCCCCCCEEEccCC--------cccccChhhhhccCCCCEEEccCCCC
Q 047549 238 NFTGSFPLTLTSCMFLTAIRLSGN--------KIEEQISPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 238 ~l~~~~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (479)
.+++.+|.. |+.|+++.| .+.+..+..+..+..+....+++|.+
T Consensus 352 ~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 352 RPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp CCCCCCCCC-----------------------------------------------CC
T ss_pred cccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 776666543 445555554 22332333334444555556666655
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.4e-18 Score=174.20 Aligned_cols=122 Identities=19% Similarity=0.231 Sum_probs=88.8
Q ss_pred CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCC
Q 047549 302 NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNL 381 (479)
Q Consensus 302 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 381 (479)
.|+.|++++|.+.+ +|. + ..+++|+.|++++|+++ .+|..++.+++|+.|+|++|++++ +| .+..+++|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-L------EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-G------GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSC
T ss_pred CceEEEecCCCCCC-CcC-c------cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCC
Confidence 47777777777765 333 2 25678888888888887 677788888888888888888885 55 67888888
Q ss_pred cEEEccCCcccccC-CccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCCh
Q 047549 382 FYIDLSYNSISGEF-PKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPI 460 (479)
Q Consensus 382 ~~L~L~~N~l~~~~-p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~ 460 (479)
++|+|++|++++.. |..+.++++|+. |++++|++++..|.
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~---------------------------------------L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVL---------------------------------------LNLQGNSLCQEEGI 551 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCE---------------------------------------EECTTSGGGGSSSC
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCE---------------------------------------EEecCCcCCCCccH
Confidence 88888888888665 777877777754 67777777755442
Q ss_pred ---hhhcccccCeeeC
Q 047549 461 ---EIGNVMFLHVLDL 473 (479)
Q Consensus 461 ---~~~~~~~L~~L~l 473 (479)
.+..+++|+.||+
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 2334778888764
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.3e-18 Score=176.12 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=67.1
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEc
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSI 282 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 282 (479)
.|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 3555666666555 3442 555556666666666655 555555566666666666666655 33 4555666666666
Q ss_pred cCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEE
Q 047549 283 NNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLG 337 (479)
Q Consensus 283 ~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~ 337 (479)
++|.+++++. ...+..+++|+.|++++|.+.+..+....+. ..+++|+.|+
T Consensus 516 s~N~l~~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~---~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLA---EMLPSVSSIL 566 (567)
T ss_dssp CSSCCCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHH---HHCTTCSEEE
T ss_pred CCCCCCCCCC-cHHHhcCCCCCEEEecCCcCCCCccHHHHHH---HHCcccCccC
Confidence 6666554420 1334555666666666666555444322110 1356666664
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.3e-15 Score=144.38 Aligned_cols=287 Identities=12% Similarity=0.079 Sum_probs=157.8
Q ss_pred CCCCcEEEccccccccCCCccCCC-CCCCCEEECCCCccc--ccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 121 FSKLQTFRAGFSYLSGSIPDDVSA-AASLEDISLPVNQLS--GAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 121 l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~--~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+.+++.|.++++- .......+.. +++|++|+|++|++. ..... .++.++.+.+..+.+ ....
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~-----------~~~~~~~~~~~~~~I---~~~a 88 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG-----------TYPNGKFYIYMANFV---PAYA 88 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS-----------SSGGGCCEEECTTEE---CTTT
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc-----------ccccccccccccccc---CHHH
Confidence 4566777776541 1111112222 677888888888776 22111 122234444444422 2344
Q ss_pred hhc--------CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcc----cc
Q 047549 198 LMN--------CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKI----EE 265 (479)
Q Consensus 198 l~~--------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l----~~ 265 (479)
|.+ +++|+.+++.. .++ .++...|..+++|+.+++.+|.+....+..|..+.++..+....+.. ..
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred hcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc
Confidence 555 78888888877 665 66666777888888888888777656666676666666665554221 11
Q ss_pred cChhhhhccCCCC-EEEccCCCCCCCCCcc-ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcc
Q 047549 266 QISPTILALVSVS-YLSINNNNLSNITGAI-GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 266 ~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.....|..+..|+ .+.+.... .++... .......++..+.+.++-... ........+++|+.+++++|++
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~------~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNA------DFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHH------HHHHHHHHCTTCCEEECTTBCC
T ss_pred ccccccccccccceeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHH------HHHHHHHhcCCCeEEECCCCCc
Confidence 2223344444444 33332211 111000 000112333334333221000 0000001255677777776666
Q ss_pred eecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCc-EEEccCCcccccCCccccCCccccccccccccCCCCcccC
Q 047549 344 KGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLF-YIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLP 422 (479)
Q Consensus 344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 422 (479)
+...+..|.+|++|+.+++.+| +....+.+|..+++|+ .+++.+ .++.+.+.+|.+|++|+.
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~--------------- 301 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY--------------- 301 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE---------------
T ss_pred ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE---------------
Confidence 6555556666777777777666 5545556666777776 777766 565555666666666654
Q ss_pred cccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeC
Q 047549 423 LFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDL 473 (479)
Q Consensus 423 ~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~l 473 (479)
+++++|++....+..|.++++|+.++.
T Consensus 302 ------------------------l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 ------------------------VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ------------------------EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ------------------------EEeCCCccCccchhhhcCCcchhhhcc
Confidence 677778888666778888999988864
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=6.4e-15 Score=127.95 Aligned_cols=91 Identities=24% Similarity=0.358 Sum_probs=52.8
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+..+++|++|++++|.+++..|..|.++++|++|++++|++++..+.. |..+++|++|++++|.+++..|..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM--------FLGLHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS--------STTCTTCCEEECCSSCCCEECTTS
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH--------hcCCCCCCEEECCCCcCCeeCHHH
Confidence 555666666666666666555556666666666666666665544432 334555666666666666555555
Q ss_pred hhcCCCCCeeeccCCcCcc
Q 047549 198 LMNCTNLITLNLRINNFRG 216 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~ 216 (479)
+..+++|++|++++|.+.+
T Consensus 122 ~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 122 FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp STTCTTCCEEECTTCCBCC
T ss_pred hhcCCCCCEEEeCCCCccC
Confidence 5555556666665555543
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=9.2e-15 Score=126.93 Aligned_cols=131 Identities=27% Similarity=0.404 Sum_probs=81.7
Q ss_pred cEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC
Q 047549 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL 204 (479)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 204 (479)
++++++++.+. .+|..+.. ++++|++++|.+++..+... +..+++|++|++++|.+++..|..|..+++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGL-------FGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCS-------GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccc-------cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 45555555554 44443332 55666666665554443321 3445666677777776666666666677777
Q ss_pred CeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 205 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
++|++++|.+. .++...+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 81 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777777766 33333566677777777777777766676777777777777777777654
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=7.5e-15 Score=139.09 Aligned_cols=79 Identities=16% Similarity=0.061 Sum_probs=59.5
Q ss_pred ccCCccEEEeeCCcceecCchhhcCCCCCC-EEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccc
Q 047549 329 AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQ-VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
.+.+|+.+++.+| ++...+.+|.+|++|+ .+++.+ .++...+.+|..+++|+.++++.|+++...+.+|.++++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 4566777777666 5555566788888888 888877 666566678888888888888888888777778888888876
Q ss_pred cc
Q 047549 408 QE 409 (479)
Q Consensus 408 l~ 409 (479)
++
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 54
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.4e-15 Score=126.78 Aligned_cols=136 Identities=22% Similarity=0.202 Sum_probs=75.9
Q ss_pred CCCCEEEccCCccc-ccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccc
Q 047549 251 MFLTAIRLSGNKIE-EQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYA 329 (479)
Q Consensus 251 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 329 (479)
++|+.|++++|.++ +.+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.+.++... ..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLA------EK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHH------HH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHH------hh
Confidence 44555555555554 23344445555555555555555433 233444455555555554444322211 13
Q ss_pred cCCccEEEeeCCcceecC-chhhcCCCCCCEEeCCCCccccccC---cccCCCCCCcEEEccCCcccccCCc
Q 047549 330 FQNLVVLGIGNCEIKGQI-PTWLGKLKKLQVLDLGSNQITGPIP---GWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 330 ~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
+++|++|++++|++++.. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+. ..|+
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 566777777777776432 2566777777777777777775444 36677777777777777766 3443
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=5.8e-16 Score=161.68 Aligned_cols=123 Identities=22% Similarity=0.273 Sum_probs=63.7
Q ss_pred hhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecC
Q 047549 268 SPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQI 347 (479)
Q Consensus 268 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 347 (479)
+..+..+..|+.|+|++|.+..++. .+..+++|+.|+|++|.+. .+|..+. .+++|++|+|++|+++ .+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~---~~~~l~~L~~L~Ls~N~l~-~lp~~~~------~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISA---NIFKYDFLTRLYLNGNSLT-ELPAEIK------NLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCG---GGGGCCSCSCCBCTTSCCS-CCCGGGG------GGTTCCEEECTTSCCS-SC
T ss_pred hhhhccCCCCcEEECCCCCCCCCCh---hhcCCCCCCEEEeeCCcCc-ccChhhh------CCCCCCEEeCcCCcCC-cc
Confidence 3344444445555555554443332 1224445555555555444 3332221 4556666666666666 45
Q ss_pred chhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCC
Q 047549 348 PTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402 (479)
Q Consensus 348 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 402 (479)
|..|..+++|++|+|++|.+. .+|..|..+++|++|+|++|.+++.+|..+..+
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 556666666666666666665 445556666666666666666666655555443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=8e-15 Score=124.49 Aligned_cols=131 Identities=25% Similarity=0.211 Sum_probs=65.5
Q ss_pred CCCcEEEccccccc-cCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 122 SKLQTFRAGFSYLS-GSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 122 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S--------NLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S--------SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h--------hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 44555555555554 34444455555555555555554432 1 1344566666666666666545555555
Q ss_pred CCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCcccccCC---ccCcCCCCCCEEEccCCcc
Q 047549 201 CTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFTGSFP---LTLTSCMFLTAIRLSGNKI 263 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l 263 (479)
+++|++|++++|.+. .++. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 94 l~~L~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 94 LPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CTTCCEEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCCEEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 666666666666655 2221 234444555555555554442222 1333444444444444433
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.1e-14 Score=124.60 Aligned_cols=125 Identities=21% Similarity=0.225 Sum_probs=63.8
Q ss_pred eeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcc
Q 047549 80 HLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQL 158 (479)
Q Consensus 80 ~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 158 (479)
++++++++++.++... +.|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~---~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT---LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCC---SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc---hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444444444333222 34445555555544 4555556666666666666666644445555566666666665555
Q ss_pred cccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCc
Q 047549 159 SGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR 215 (479)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 215 (479)
++..+.. |..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~--------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRT--------FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTT--------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHH--------hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 5444332 334455555555555555443344444555555555555443
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=4.8e-13 Score=129.50 Aligned_cols=215 Identities=15% Similarity=0.197 Sum_probs=121.1
Q ss_pred CCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEc
Q 047549 179 NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRL 258 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 258 (479)
+|+.+.+.. .++.....+|.+|++|+.+++..|.+. .++...|. ..+|+.+.+..+ ++..-..+|..+++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 456666554 444444455666666666666666555 45544444 356666666533 44344455566666666666
Q ss_pred cCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc----cCCCCccccccccccCCcc
Q 047549 259 SGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE----AIPDENQITISSYAFQNLV 334 (479)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~~~~~~~L~ 334 (479)
..+ ++.+...+|.. .+|+.+.+. +.++.++. .+|..|++|+.+.+.++.... .++... ..++++|+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a-----F~~c~~L~ 303 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIHPYC-----LEGCPKLA 303 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEECTTT-----TTTCTTCC
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEECh--hHhhCCCCCCEEEeCCccccCCcccEECHHH-----hhCCccCC
Confidence 553 44444445554 456666663 33443332 445566666666665554331 011111 12556777
Q ss_pred EEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCc-ccccccc
Q 047549 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLP-ALALQEA 410 (479)
Q Consensus 335 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~l~~ 410 (479)
.+.+.+ .++..-..+|.+|++|+.++|..+ ++.....+|..+ +|+.+++++|.+....+..|.+++ .+..+.+
T Consensus 304 ~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 304 RFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp EECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred eEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 777763 355455567777788888877554 554556677777 788888887777766666677664 4444443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.4e-14 Score=122.06 Aligned_cols=127 Identities=21% Similarity=0.300 Sum_probs=63.6
Q ss_pred CEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCC
Q 047549 99 SILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLA 178 (479)
Q Consensus 99 ~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~ 178 (479)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~---~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i-------------------- 66 (193)
T 2wfh_A 13 TVVRCSNKGLK---VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-------------------- 66 (193)
T ss_dssp TEEECTTSCCS---SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCC--------------------
T ss_pred CEEEcCCCCCC---cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcC--------------------
Confidence 35555555555 3444332 34555555555555 4444455555555555555544
Q ss_pred CCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEc
Q 047549 179 NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRL 258 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 258 (479)
++..+..|..+++|++|++++|.+. .++...|..+++|++|++++|.++...+..+..+++|+.|++
T Consensus 67 ------------~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 67 ------------STLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp ------------CCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred ------------CEeCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 4444444444555555555555544 233334455555555555555555333334555555666666
Q ss_pred cCCccc
Q 047549 259 SGNKIE 264 (479)
Q Consensus 259 ~~n~l~ 264 (479)
++|.+.
T Consensus 134 ~~N~~~ 139 (193)
T 2wfh_A 134 GANPLY 139 (193)
T ss_dssp CSSCEE
T ss_pred CCCCee
Confidence 666554
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.5e-14 Score=120.06 Aligned_cols=126 Identities=29% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCCcEEEccccccc-cCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 122 SKLQTFRAGFSYLS-GSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 122 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A--------NLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T--------TCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h--------hhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 55666666666665 45566666666666666666666543 1 1455667777777777777656666666
Q ss_pred CCCCCeeeccCCcCccccC-ccccCCCCCCcEEEccCCcccccCC---ccCcCCCCCCEEEc
Q 047549 201 CTNLITLNLRINNFRGDLS-AYNFSTLHNLHTIDLGNNNFTGSFP---LTLTSCMFLTAIRL 258 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l 258 (479)
+++|++|++++|.+++ ++ ...+..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 87 l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 6777777777776652 21 1234445555555555555543322 23344444444443
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=4.7e-13 Score=129.57 Aligned_cols=217 Identities=15% Similarity=0.116 Sum_probs=112.6
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 253 (479)
|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .+....|..+++|+.+++..|.++..-...|. +.+|
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 4443 5666666554 554445555553 577777664 343 45555667777777777777666633333333 5667
Q ss_pred CEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCc
Q 047549 254 TAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L 333 (479)
+.+.+..+ +..+...+|..+++|+.+++..+ ++.++. .+|.. .+|+.+.+..+ +.......+ ..+++|
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--~aF~~-~~L~~i~lp~~-i~~I~~~aF------~~c~~L 273 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--EAFRE-SGITTVKLPNG-VTNIASRAF------YYCPEL 273 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT--TTTTT-CCCSEEEEETT-CCEECTTTT------TTCTTC
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc--ccccc-CCccEEEeCCC-ccEEChhHh------hCCCCC
Confidence 77777643 55555566666677777776653 333322 22333 45555555221 211111111 144555
Q ss_pred cEEEeeCCcce-----ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccc
Q 047549 334 VVLGIGNCEIK-----GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQ 408 (479)
Q Consensus 334 ~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l 408 (479)
+.+++.++.+. ...+..|.+|++|+.+++.+ .+......+|..+.+|+.+.|..| ++.+.+.+|.++ .|+.+
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 55555554432 22334555555555555552 344334445555555555555333 444445555555 55544
Q ss_pred ccc
Q 047549 409 EAK 411 (479)
Q Consensus 409 ~~~ 411 (479)
.+.
T Consensus 351 ~l~ 353 (401)
T 4fdw_A 351 KVE 353 (401)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.9e-15 Score=121.84 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCCCEEEccCCCCC--CCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhc
Q 047549 275 VSVSYLSINNNNLS--NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLG 352 (479)
Q Consensus 275 ~~L~~L~L~~n~l~--~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 352 (479)
++++.|++++|.++ .++. .+..+++|+.|++++|.+.+. ..+ ..+++|++|++++|.+++.+|..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~--~~~------~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG---LTDEFEELEFLSTINVGLTSI--ANL------PKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS---CCTTCTTCCEEECTTSCCCCC--TTC------CCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred ccCeEEEccCCcCChhHHHH---HHhhcCCCcEEECcCCCCCCc--hhh------hcCCCCCEEECCCCcccchHHHHhh
Confidence 45666666666665 3332 234445555555555554433 111 1344555555555555543444444
Q ss_pred CCCCCCEEeCCCCccccc-cCcccCCCCCCcEEEccCCcccccCC---ccccCCcccccc
Q 047549 353 KLKKLQVLDLGSNQITGP-IPGWLGNMPNLFYIDLSYNSISGEFP---KEFCGLPALALQ 408 (479)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~l 408 (479)
.+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.+
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 455555555555555432 12444455555555555555543333 234444444443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=5.6e-14 Score=120.32 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=78.0
Q ss_pred CCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCC
Q 047549 277 VSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKK 356 (479)
Q Consensus 277 L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 356 (479)
.+.++++++.++.++... .++|+.|++++|.+.+..+..+. .+++|++|++++|++++..+..+..+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-----PSSATRLELESNKLQSLPHGVFD------KLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-----CTTCSEEECCSSCCCCCCTTTTT------TCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCC-----CCCCcEEEeCCCcccEeCHHHhc------CcccccEEECCCCcceEeChhHccCCCc
Confidence 467888888887666422 25677777777776654333222 4567777777777777555555667777
Q ss_pred CCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccc
Q 047549 357 LQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 357 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
|++|++++|++++..+..+..+++|++|++++|++++..+..|.+++.|+.
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 777777777777555556667777777777777777555555566666643
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.3e-13 Score=117.95 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=16.8
Q ss_pred CCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCccc
Q 047549 119 GNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLS 159 (479)
Q Consensus 119 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (479)
..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 34444444444444444222223334444444444444433
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=9.7e-14 Score=118.69 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=54.9
Q ss_pred hhccCCCCEEEccCCCCCCCCCccccccCC-CCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCch
Q 047549 271 ILALVSVSYLSINNNNLSNITGAIGILMGC-KNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT 349 (479)
Q Consensus 271 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 349 (479)
+..+.+|+.|++++|.++.++. +..+ ++|+.|++++|.+.+. ..+ ..+++|++|++++|++++..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~----~~~~~~~L~~L~Ls~N~l~~~--~~l------~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN----LGATLDQFDAIDFSDNEIRKL--DGF------PLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC----GGGGTTCCSEEECCSSCCCEE--CCC------CCCSSCCEEECCSSCCCEECSC
T ss_pred cCCcCCceEEEeeCCCCchhHH----hhhcCCCCCEEECCCCCCCcc--ccc------ccCCCCCEEECCCCcccccCcc
Confidence 3455667777777776665432 2222 2555555555555442 111 1344555555555555543333
Q ss_pred hhcCCCCCCEEeCCCCccccccCc--ccCCCCCCcEEEccCCccc
Q 047549 350 WLGKLKKLQVLDLGSNQITGPIPG--WLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 350 ~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~ 392 (479)
.+..+++|++|++++|++. .+|. .+..+++|++|++++|+++
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 3455555555555555554 2332 4455555555555555554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.9e-13 Score=116.90 Aligned_cols=132 Identities=15% Similarity=0.154 Sum_probs=76.8
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCC-CCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccch
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAA-ASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~ 196 (479)
+..+.+|++|++++|.++ .++. +..+ ++|++|++++|.+++. . .+..+++|++|++++|.+++..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~--------~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--D--------GFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--C--------CCCCCSSCCEEECCSSCCCEECSC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--c--------ccccCCCCCEEECCCCcccccCcc
Confidence 445667777777777766 3443 3333 3677777777766643 1 145566777777777777654444
Q ss_pred hhhcCCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCcccccCCcc----CcCCCCCCEEEccCCcc
Q 047549 197 FLMNCTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFTGSFPLT----LTSCMFLTAIRLSGNKI 263 (479)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~l 263 (479)
.+..+++|++|++++|.+. .++. ..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|..
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4566777777777777664 3432 23455566666666666655 33332 44555555555555544
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=1.8e-11 Score=118.89 Aligned_cols=308 Identities=14% Similarity=0.156 Sum_probs=186.3
Q ss_pred cccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCC-CcCCCCCCCcEEEccccccccCCCccCC
Q 047549 69 YPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLP-SGLGNFSKLQTFRAGFSYLSGSIPDDVS 143 (479)
Q Consensus 69 ~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 143 (479)
..++.++.+|+++.+..+ ++.+... +.+|+.+++..+ ++ .++ .++..+..|+.+.+..+ +......+|.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~---~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK---MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC---EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce---EccchhhcccccchhhcccCc-eeeecceeee
Confidence 446667777777777533 4433322 255666666543 22 222 24556666665554433 2222333444
Q ss_pred CCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCcccc
Q 047549 144 AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223 (479)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 223 (479)
++..++...... +.....-.|..+++|+.+.+.++. +......|.++++|+.+.+..+ +. .+....|
T Consensus 138 ~~~~~~~~~~~~----------~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F 204 (394)
T 4fs7_A 138 GCDFKEITIPEG----------VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCF 204 (394)
T ss_dssp TCCCSEEECCTT----------CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTT
T ss_pred cccccccccCcc----------ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhh
Confidence 443322222111 111112236777888888886553 3345567778888888888765 33 4555677
Q ss_pred CCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCC
Q 047549 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNL 303 (479)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L 303 (479)
..+..|+.+.+..+... +.........|+.+.+... ++.+....+..+..++.+.+..+... +.. ..+..+..+
T Consensus 205 ~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~--~~F~~~~~l 278 (394)
T 4fs7_A 205 AECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGG--SLFYNCSGL 278 (394)
T ss_dssp TTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECS--CTTTTCTTC
T ss_pred ccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eec--ccccccccc
Confidence 78888888777655432 2334445567888877653 33444556777888888888765432 222 456677777
Q ss_pred cEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcE
Q 047549 304 RMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY 383 (479)
Q Consensus 304 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 383 (479)
+.+......+.. ... ..+.+|+.+.+..+ ++..-..+|.+|++|+.+++.++ ++.....+|.++.+|+.
T Consensus 279 ~~~~~~~~~i~~----~~F-----~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 279 KKVIYGSVIVPE----KTF-----YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp CEEEECSSEECT----TTT-----TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE
T ss_pred ceeccCceeecc----ccc-----cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE
Confidence 777765543221 111 25678888888654 55455667888899999988754 55455678888899999
Q ss_pred EEccCCcccccCCccccCCccccccccccc
Q 047549 384 IDLSYNSISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 384 L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
+++..+ ++.+...+|.+|.+|+.+.++.+
T Consensus 348 i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 348 INFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 998776 76667778889888887766543
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=6.2e-13 Score=112.83 Aligned_cols=97 Identities=21% Similarity=0.186 Sum_probs=73.2
Q ss_pred CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCC
Q 047549 302 NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNL 381 (479)
Q Consensus 302 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 381 (479)
..+.+++++|.+.. +|.. .++++++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus 10 ~~~~l~~s~n~l~~-ip~~--------~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTG--------IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp ETTEEECTTSCCSS-CCSC--------CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEEeCCCCcCc-cCcc--------CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 35678888887765 3321 23678888888888887767778888888888888888886666677888888
Q ss_pred cEEEccCCcccccCCccccCCccccc
Q 047549 382 FYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 382 ~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
++|+|++|++++..+..|.++++|+.
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCE
Confidence 88888888888666667777777754
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.3e-12 Score=111.28 Aligned_cols=95 Identities=22% Similarity=0.228 Sum_probs=69.8
Q ss_pred cEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcE
Q 047549 304 RMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY 383 (479)
Q Consensus 304 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 383 (479)
+.+++++|.+.. +|.. .+++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++
T Consensus 15 ~~l~~~~n~l~~-iP~~--------~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAG--------IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCSS-CCSC--------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCCc-cCCC--------cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 677887777743 3432 2357888888888888766777888888888888888888665666778888888
Q ss_pred EEccCCcccccCCccccCCccccc
Q 047549 384 IDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 384 L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
|+|++|++++..+..|.++++|+.
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSE
T ss_pred EECCCCccceeCHHHhccccCCCE
Confidence 888888888655556777777754
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.38 E-value=1.1e-10 Score=113.15 Aligned_cols=319 Identities=13% Similarity=0.090 Sum_probs=211.8
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.+++.+.+.. .++..-..++.+|++|+.+++..+ ++.+... ...|+.+.+..+--. .-..++..+..++..
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~---i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKS---IGVEAFKGCDFKEIT 145 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCE---ECTTTTTTCCCSEEE
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceee---ecceeeecccccccc
Confidence 4799999974 466555678899999999999755 4443322 267777766654221 112345555443333
Q ss_pred EccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCee
Q 047549 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITL 207 (479)
Q Consensus 128 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 207 (479)
..... ......+|.++++|+.+.+..+... ++. -.|..+.+|+.+.+..+ ++......+.++..|+.+
T Consensus 146 ~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~--I~~-------~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 146 IPEGV--TVIGDEAFATCESLEYVSLPDSMET--LHN-------GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp CCTTC--CEECTTTTTTCTTCCEEECCTTCCE--ECT-------TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cCccc--cccchhhhcccCCCcEEecCCccce--ecc-------ccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 32222 2233457888999999998654311 122 13677888888888765 554556778888889888
Q ss_pred eccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCC
Q 047549 208 NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 208 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (479)
.+..+... +.. .......|+.+.+... ++......+..+..++.+.+..+.. .+....|..+..++.+....+.+
T Consensus 214 ~~~~~~~~--i~~-~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 214 EFPNSLYY--LGD-FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCTTCCE--ECT-TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE
T ss_pred ecCCCceE--eeh-hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee
Confidence 87766542 222 2334567888887643 3324445677888899998887643 34556778888888888766543
Q ss_pred CCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcc
Q 047549 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQI 367 (479)
Q Consensus 288 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 367 (479)
. . ..+..+.+|+.+.+..+ +.......+ ..+.+|+.+++..+ ++..-..+|.+|++|+.+++..+ +
T Consensus 289 ~---~--~~F~~~~~L~~i~l~~~-i~~I~~~aF------~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l 354 (394)
T 4fs7_A 289 P---E--KTFYGCSSLTEVKLLDS-VKFIGEEAF------ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L 354 (394)
T ss_dssp C---T--TTTTTCTTCCEEEECTT-CCEECTTTT------TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred c---c--ccccccccccccccccc-cceechhhh------cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c
Confidence 2 1 35677888998888654 221111111 26778999999654 66555678999999999999876 6
Q ss_pred ccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccc
Q 047549 368 TGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQ 408 (479)
Q Consensus 368 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l 408 (479)
+.....+|..+++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred cEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 6566778999999999999765 33 345679999988753
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=5.7e-15 Score=129.04 Aligned_cols=127 Identities=26% Similarity=0.316 Sum_probs=69.1
Q ss_pred hhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCch
Q 047549 270 TILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT 349 (479)
Q Consensus 270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 349 (479)
.+..+++|++|++++|.++.++ .+..+++|+.|++++|.+. .+|... ..+++|++|++++|++++ +|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~----~~~~l~~L~~L~l~~n~l~-~l~~~~------~~~~~L~~L~L~~N~l~~-l~- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIK-KIENLD------AVADTLEELWISYNQIAS-LS- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC----CHHHHTTCCEEEEEEEEEC-SCSSHH------HHHHHCSEEEEEEEECCC-HH-
T ss_pred HHhcCCCCCEEECCCCCCcccc----ccccCCCCCEEECCCCCcc-cccchh------hcCCcCCEEECcCCcCCc-CC-
Confidence 3444444444444444444322 2333444444444444443 122111 134567777777777764 33
Q ss_pred hhcCCCCCCEEeCCCCccccccC-cccCCCCCCcEEEccCCcccccCCcc----------ccCCccccccc
Q 047549 350 WLGKLKKLQVLDLGSNQITGPIP-GWLGNMPNLFYIDLSYNSISGEFPKE----------FCGLPALALQE 409 (479)
Q Consensus 350 ~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~----------~~~l~~L~~l~ 409 (479)
.+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++..|.. +..+++|+.++
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 46667777777777777764322 35667777777777777776554432 55566666554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=7.4e-15 Score=128.31 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=89.8
Q ss_pred hhcCCCCCeeeccCCcCccccCc-----cccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhh
Q 047549 198 LMNCTNLITLNLRINNFRGDLSA-----YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL 272 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 272 (479)
+.....++.++++.+.+.+.++. ..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhh
Confidence 55566777777777777654442 134445555555555555543 33 44444555555555555543 333344
Q ss_pred ccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc-hhh
Q 047549 273 ALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP-TWL 351 (479)
Q Consensus 273 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l 351 (479)
.+++|+.|++++|++++++ .+ ..+++|++|++++|++++..+ ..+
T Consensus 91 ~~~~L~~L~L~~N~l~~l~----~~------------------------------~~l~~L~~L~l~~N~i~~~~~~~~l 136 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS----GI------------------------------EKLVNLRVLYMSNNKITNWGEIDKL 136 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH----HH------------------------------HHHHHSSEEEESEEECCCHHHHHHH
T ss_pred cCCcCCEEECcCCcCCcCC----cc------------------------------ccCCCCCEEECCCCcCCchhHHHHH
Confidence 4444555555544444321 11 245677788888877774322 467
Q ss_pred cCCCCCCEEeCCCCccccccCc----------ccCCCCCCcEEEccCCccc
Q 047549 352 GKLKKLQVLDLGSNQITGPIPG----------WLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~L~~N~l~ 392 (479)
..+++|++|++++|.+.+..|. .+..+++|+.|| +|.++
T Consensus 137 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7788888888888888755443 267788888886 66665
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=9.5e-12 Score=105.44 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=15.6
Q ss_pred CCCcEEEccccccccCCCccCCCCCCCCEEECCCCccc
Q 047549 122 SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLS 159 (479)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (479)
++|++|++++|.+++..|..|.++++|++|++++|+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 33444444444444333333444444444444444433
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=1.8e-11 Score=104.09 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=16.4
Q ss_pred CCCcEEEccccccccCCCccCCCCCCCCEEECCCCccc
Q 047549 122 SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLS 159 (479)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (479)
++|++|++++|.+.+..|..|.++++|++|++++|+++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 70 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT 70 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC
Confidence 34444444444444333334444444444444444443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=7.3e-13 Score=126.97 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=34.6
Q ss_pred cCCccEEEeeCCcceec----CchhhcCCCCCCEEeCCCCccccccCcccCCC---CC--CcEEE--ccCCccc
Q 047549 330 FQNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSNQITGPIPGWLGNM---PN--LFYID--LSYNSIS 392 (479)
Q Consensus 330 ~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~--L~~L~--L~~N~l~ 392 (479)
.++|++|++++|.+++. ++..+..+++|++|+|++|.|.+.....+..+ .. ++.+. +..|.+.
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 34677777777777643 33445566778888888888765433333221 21 66666 6666665
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=1.8e-12 Score=124.28 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=27.1
Q ss_pred CCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccCCcccccC----hhhhhccCCCCEEEccCCCCC
Q 047549 225 TLHNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRLSGNKIEEQI----SPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 288 (479)
..++|++|++++|.+++. ++..+...++|+.|++++|.++... +..+...++|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 334444444444444321 1223334444555555555544321 122223345555555555444
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=7.8e-11 Score=112.28 Aligned_cols=74 Identities=24% Similarity=0.196 Sum_probs=46.8
Q ss_pred ccCCccEEEeeC-CcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCC
Q 047549 329 AFQNLVVLGIGN-CEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402 (479)
Q Consensus 329 ~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 402 (479)
.+.+|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 103 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccC
Confidence 445666666664 66665555666666666666766666666666666666666666666666664444444443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=1.8e-08 Score=97.50 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=56.1
Q ss_pred cCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccc
Q 047549 330 FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQE 409 (479)
Q Consensus 330 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ 409 (479)
+..|+.+.+..+-.. .-...|.+++.|+.+.+. +.+......+|..+.+|+.++|..+ ++.+...+|.+|.+|+.+.
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 345555555433222 333455556666666654 2333333445556666666666543 4434455566666665555
Q ss_pred cccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCCC
Q 047549 410 AKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNF 478 (479)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l 478 (479)
+..... .+....|....+| +.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 341 ip~sv~--~I~~~aF~~C~~L--------------~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPSSVT--KIPESAFSNCTAL--------------NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECTTCC--BCCGGGGTTCTTC--------------CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred ECcccC--EEhHhHhhCCCCC--------------CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 543211 1122223332322 235555554331 3566778888888877654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=2.5e-08 Score=96.60 Aligned_cols=269 Identities=13% Similarity=0.117 Sum_probs=128.5
Q ss_pred cCCCCCCCcEEEccccc---cccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc
Q 047549 117 GLGNFSKLQTFRAGFSY---LSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193 (479)
Q Consensus 117 ~~~~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~ 193 (479)
+|.+|.+|+.+.+..+. ++..-..+|.++.+|+.+.+..+ +..+..-.|..+.+|+.+.+..+ ++..
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---------~~~I~~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---------VTEIDSEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---------CSEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---------cceehhhhhhhhcccccccccce-eeee
Confidence 45556666666665442 33223344555555555544322 11111112445556666666433 2223
Q ss_pred cchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhh-
Q 047549 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL- 272 (479)
Q Consensus 194 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~- 272 (479)
....|..+..|+.+.+..+ +. .+....|.. ..|+.+.+..+-.. .....+..+..+.................+.
T Consensus 152 ~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~ 227 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEK 227 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEE
T ss_pred cccceecccccccccccce-ee-Eeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecc
Confidence 3445555666666665443 22 333333432 34555555443221 3334455555555554443322111000000
Q ss_pred ------------ccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeC
Q 047549 273 ------------ALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGN 340 (479)
Q Consensus 273 ------------~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (479)
....+..+.+.. .++.+.. .+|..+..|+.+.+..+... +..... ..+.+|+.+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~--~aF~~c~~L~~i~lp~~~~~--I~~~aF-----~~c~~L~~i~l~- 296 (394)
T 4gt6_A 228 SANGDYALIRYPSQREDPAFKIPN-GVARIET--HAFDSCAYLASVKMPDSVVS--IGTGAF-----MNCPALQDIEFS- 296 (394)
T ss_dssp CTTSCEEEEECCTTCCCSEEECCT-TEEEECT--TTTTTCSSCCEEECCTTCCE--ECTTTT-----TTCTTCCEEECC-
T ss_pred cccccccccccccccccceEEcCC-cceEccc--ceeeecccccEEecccccce--ecCccc-----ccccccccccCC-
Confidence 111222222211 1111111 34566667777666433211 111100 145667777774
Q ss_pred CcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccccc
Q 047549 341 CEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKN 412 (479)
Q Consensus 341 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~ 412 (479)
+.++......|.+|.+|+.++|.++ ++.....+|..+.+|+.+.+..+ ++.+...+|.+|++|+.+.+.+
T Consensus 297 ~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 297 SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 3344344566777777777777654 44344566777777777777544 5545566777777777766654
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1e-09 Score=104.41 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=39.4
Q ss_pred eeecCCC-cCCCcCCCC---CCCCEEEcCC-cccccCCCCC-CcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEEC
Q 047549 80 HLNLSHN-HLSFLSPSV---PFLSILDFSH-NYFRGHCQLP-SGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISL 153 (479)
Q Consensus 80 ~L~L~~n-~l~~~~~~~---~~L~~L~L~~-n~l~~~~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 153 (479)
.++++++ +++.++. + .+|++|+|++ |.+.+ +| ..|..+++|++|+|++|++++..|..|.++++|++|+|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH---LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCE---ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCC---cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3455555 5554443 3 3455555553 55542 22 34555555555555555555544445555555555555
Q ss_pred CCCcccc
Q 047549 154 PVNQLSG 160 (479)
Q Consensus 154 ~~n~l~~ 160 (479)
++|++++
T Consensus 88 ~~N~l~~ 94 (347)
T 2ifg_A 88 SFNALES 94 (347)
T ss_dssp CSSCCSC
T ss_pred CCCccce
Confidence 5555553
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=2.5e-07 Score=89.01 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=86.9
Q ss_pred CCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCc
Q 047549 225 TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLR 304 (479)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~ 304 (479)
....+..+.+..... ......+..+.+|+.+.+..+ +..+....|..+..|+.+.+..+ ++.+.. .++..+..|+
T Consensus 192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~--~aF~~~~~l~ 266 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS--FLLQNCTALK 266 (379)
T ss_dssp TTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT--TTTTTCTTCC
T ss_pred cccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc--cccceeehhc
Confidence 344444444433221 133344555666666666543 33344455666667777766543 333322 3455566666
Q ss_pred EEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEE
Q 047549 305 MLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYI 384 (479)
Q Consensus 305 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 384 (479)
.+.+..+ +.......+ ..+.+|+.+.+.++.++..-..+|.+|.+|+.+.|..+ ++..-..+|.++.+|+.+
T Consensus 267 ~i~l~~~-i~~i~~~aF------~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLC------SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp EEEECCC-CSEECTTTT------TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred ccccccc-ceecccccc------ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 6665332 111111111 14556666666666665444556666777777766543 443344566666677766
Q ss_pred EccCCcccccCCccccCCccc
Q 047549 385 DLSYNSISGEFPKEFCGLPAL 405 (479)
Q Consensus 385 ~L~~N~l~~~~p~~~~~l~~L 405 (479)
.+..+ ++.+-..+|.++..+
T Consensus 339 ~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 339 SYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCTT-CCEECTTTTTTSSCC
T ss_pred EECCc-cCEEchhHhhCCCCC
Confidence 66543 554555566666443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=4e-09 Score=100.15 Aligned_cols=144 Identities=18% Similarity=0.279 Sum_probs=73.0
Q ss_pred cCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhh--ccCCCCEEEccCC--CCCCCCCcccccc
Q 047549 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL--ALVSVSYLSINNN--NLSNITGAIGILM 298 (479)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n--~l~~~~~~~~~l~ 298 (479)
+..+|+|+.|+++++.-. .++. + ..++|+.|++..+.+.......+. .+++|+.|+|+.+ ....... +..+.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~-~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD-MNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC-GGGTG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh-HHHHH
Confidence 455667777777665211 2222 2 256777777777666543333333 4666777766421 1100000 00000
Q ss_pred CCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhh---cCCCCCCEEeCCCCccccc----c
Q 047549 299 GCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWL---GKLKKLQVLDLGSNQITGP----I 371 (479)
Q Consensus 299 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~----~ 371 (479)
..+....+++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. +
T Consensus 244 ------------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L 299 (362)
T 2ra8_A 244 ------------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299 (362)
T ss_dssp ------------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH
T ss_pred ------------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH
Confidence 00011235667777777766654332222 2356677777777776643 2
Q ss_pred CcccCCCCCCcEEEccCCccccc
Q 047549 372 PGWLGNMPNLFYIDLSYNSISGE 394 (479)
Q Consensus 372 ~~~~~~l~~L~~L~L~~N~l~~~ 394 (479)
+..+..+++|+.|++++|.++..
T Consensus 300 ~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 300 LDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HTTHHHHTTCSEEECCSBBCCHH
T ss_pred HhhcccCCcceEEECCCCcCCHH
Confidence 22334456777777777766543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=2.6e-06 Score=81.86 Aligned_cols=267 Identities=10% Similarity=0.034 Sum_probs=157.5
Q ss_pred cCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccch
Q 047549 117 GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196 (479)
Q Consensus 117 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~ 196 (479)
+|.+|.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +. .+..-.|.. .+|+.+.+..+ ++.....
T Consensus 64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~--------~I~~~aF~~-~~L~~i~lp~~-~~~i~~~ 130 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK--------KFGDYVFQG-TDLDDFEFPGA-TTEIGNY 130 (379)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC--------EECTTTTTT-CCCSEEECCTT-CCEECTT
T ss_pred HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee--------Eeccceecc-CCcccccCCCc-ccccccc
Confidence 5667777777777543 443334455555 4665554322 11 111112333 35677766544 2222233
Q ss_pred hhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccc------------cCCccCcCCCCCCEEEccCCccc
Q 047549 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG------------SFPLTLTSCMFLTAIRLSGNKIE 264 (479)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~~L~~L~l~~n~l~ 264 (479)
.|.++ +++...+..+ ++ .+....+..+..++.+.+..+.... .....+.....+..+.+.... .
T Consensus 131 ~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 206 (379)
T 4h09_A 131 IFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-K 206 (379)
T ss_dssp TTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-C
T ss_pred ccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-e
Confidence 34333 4555544332 22 3333456666667666665433211 112233445556666655432 2
Q ss_pred ccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcce
Q 047549 265 EQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIK 344 (479)
Q Consensus 265 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 344 (479)
......+..+..++.+.+..+ +..+.. ..+..+..|+.+.+..+ +.......+ ..+.+|+.+.+..+ ++
T Consensus 207 ~i~~~~f~~~~~l~~i~~~~~-~~~i~~--~~f~~~~~L~~i~lp~~-v~~I~~~aF------~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 207 TVTAYGFSYGKNLKKITITSG-VTTLGD--GAFYGMKALDEIAIPKN-VTSIGSFLL------QNCTALKTLNFYAK-VK 275 (379)
T ss_dssp EECTTTTTTCSSCSEEECCTT-CCEECT--TTTTTCSSCCEEEECTT-CCEECTTTT------TTCTTCCEEEECCC-CS
T ss_pred EEeecccccccccceeeeccc-eeEEcc--ccccCCccceEEEcCCC-ccEeCcccc------ceeehhcccccccc-ce
Confidence 334556677788888888654 332322 45678888999888654 221111111 25678899888654 55
Q ss_pred ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccccc
Q 047549 345 GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKN 412 (479)
Q Consensus 345 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~ 412 (479)
......|.+|++|+.+.+.++.++.....+|.++.+|+.++|..+ ++.+...+|.+|++|+.+.+..
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 445567899999999999988888666788999999999999754 7666778899999998877654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=4.7e-09 Score=99.64 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=47.3
Q ss_pred CCCCCCEEeCCCCccccccCccc---CCCCCCcEEEccCCcccccC----CccccCCccccccccccccC
Q 047549 353 KLKKLQVLDLGSNQITGPIPGWL---GNMPNLFYIDLSYNSISGEF----PKEFCGLPALALQEAKNRAD 415 (479)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~l~~~~~~~ 415 (479)
.+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+++.- +..+..++.|+.++++.|..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 57899999999999875433222 35789999999999998643 33445678888888877653
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=4e-08 Score=84.11 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=44.5
Q ss_pred CCccEEEeeCCcceec----CchhhcCCCCCCEEeC--CCCccccc----cCcccCCCCCCcEEEccCCccc
Q 047549 331 QNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDL--GSNQITGP----IPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++|++|++++|.+++. +...+...++|++|+| ++|.+.+. +...+...++|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5677777777777643 4456677788888888 77888643 3345566788888888888876
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=2.1e-07 Score=79.63 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=26.7
Q ss_pred CCCcEEEccCCccccc----CCccCcCCCCCCEEEc--cCCcccccC----hhhhhccCCCCEEEccCCCC
Q 047549 227 HNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRL--SGNKIEEQI----SPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 227 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l 287 (479)
+.|++|++++|.+... +...+...+.|++|++ ++|.+.... ...+...++|++|++++|.+
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3444444444444321 2233344445555555 455554332 12233334555555555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=2.4e-06 Score=76.80 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=59.0
Q ss_pred ccCCccEEEeeCCccee--cCchhhcCCCCCCEEeCCCCccccc-cCcccCCCCCCcEEEccCCcccccCCc-------c
Q 047549 329 AFQNLVVLGIGNCEIKG--QIPTWLGKLKKLQVLDLGSNQITGP-IPGWLGNMPNLFYIDLSYNSISGEFPK-------E 398 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~-------~ 398 (479)
.+++|+.|++++|++++ .++..+..+++|+.|+|++|++.+. ....+..+ +|++|+|++|.+.+..|+ .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 56789999999999886 3456677899999999999999854 11223333 899999999999876653 2
Q ss_pred ccCCccccccc
Q 047549 399 FCGLPALALQE 409 (479)
Q Consensus 399 ~~~l~~L~~l~ 409 (479)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666553
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=8.4e-06 Score=73.30 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=15.4
Q ss_pred CCCEEEccCCcccccCh-------hhhhccCCCCEEE
Q 047549 252 FLTAIRLSGNKIEEQIS-------PTILALVSVSYLS 281 (479)
Q Consensus 252 ~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~ 281 (479)
+|++|++++|.+.+..| ..+..+++|+.||
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 45555555555543222 2345566666665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=1.2e-05 Score=66.96 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=13.4
Q ss_pred CCEEEccCC-cCccccchhhhcCCCCCeeeccCC
Q 047549 180 LKSLKLHTN-SLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 180 L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
|++|++++| ++|..--..+..+++|++|+++++
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 444444443 243332233334444444444443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=1.7e-05 Score=66.08 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=5.6
Q ss_pred CCCCCcEEEccCc
Q 047549 299 GCKNLRMLLLCKI 311 (479)
Q Consensus 299 ~~~~L~~L~l~~n 311 (479)
.+++|+.|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3444444444433
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.22 E-value=4.4e-05 Score=64.87 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=40.1
Q ss_pred CCCCCCCcEEEccccccccC----CCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCC---cC
Q 047549 118 LGNFSKLQTFRAGFSYLSGS----IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN---SL 190 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n---~l 190 (479)
+..-+.|+.|+|++|.+.+. +.+.+...+.|++|+|++|.++......+... +..-+.|++|+|+++ .+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a----L~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS----TLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH----TTTTCCCSEEECCCCSSCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH----HhhCCceeEEECCCCcCcCc
Confidence 33444555555555555431 12222334555555555555553322222211 223344555665543 22
Q ss_pred cc----ccchhhhcCCCCCeeeccCCc
Q 047549 191 SG----FLPQFLMNCTNLITLNLRINN 213 (479)
Q Consensus 191 ~~----~~~~~l~~l~~L~~L~l~~n~ 213 (479)
.. .+...+..-+.|+.|+++.|.
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 21 123334444555555555443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.15 E-value=0.00013 Score=61.88 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCccEEEeeCCcceec----CchhhcCCCCCCEEeCCCC---ccccc----cCcccCCCCCCcEEEccCCccc
Q 047549 331 QNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSN---QITGP----IPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n---~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
..|+.|+|++|.+++. +...+...+.|++|+|++| .+.+. +...+...+.|+.|+++.|.+.
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4577777777777643 3445666677888888765 33321 3345566677888888776544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.35 E-value=0.0077 Score=47.49 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=26.8
Q ss_pred eeecCCCcCC--CcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEcccccc
Q 047549 80 HLNLSHNHLS--FLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYL 134 (479)
Q Consensus 80 ~L~L~~n~l~--~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~ 134 (479)
.++.+++.++ .++..+ ++|++|+|++|.++ .+|. .+..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~---~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLT---ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCS---SCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCC---ccChhhhhhccccCEEEecCCCe
Confidence 4555555554 444333 34555555555555 3443 344555666666665544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.30 E-value=0.0052 Score=48.50 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=29.1
Q ss_pred EEEeeCCcce-ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 335 VLGIGNCEIK-GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 335 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
.++-++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4444555544 12332221 34566666666666444555566666666666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.68 E-value=60 Score=23.44 Aligned_cols=13 Identities=0% Similarity=0.097 Sum_probs=5.5
Q ss_pred CCCCCCCcEEEcc
Q 047549 118 LGNFSKLQTFRAG 130 (479)
Q Consensus 118 ~~~l~~L~~L~l~ 130 (479)
|..|..|+.+.+-
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 3344444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.61 E-value=73 Score=22.97 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=15.7
Q ss_pred hhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEcc
Q 047549 196 QFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235 (479)
Q Consensus 196 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 235 (479)
.+|.+|.+|+.+.+-.+ ++ .+....|..+.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEc
Confidence 33444444444444332 11 2333344444444444443
Done!