Query 047550
Match_columns 395
No_of_seqs 299 out of 1915
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 12:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03212 Transcription repress 100.0 2.5E-31 5.5E-36 252.3 10.9 127 97-230 10-137 (249)
2 KOG0048 Transcription factor, 100.0 5.8E-31 1.3E-35 251.6 11.9 109 116-224 6-115 (238)
3 PLN03091 hypothetical protein; 100.0 1.9E-30 4.2E-35 262.1 14.9 112 114-225 9-121 (459)
4 KOG0049 Transcription factor, 99.9 4.2E-24 9.2E-29 222.2 11.6 149 71-219 309-461 (939)
5 KOG0049 Transcription factor, 99.9 2.6E-23 5.7E-28 216.3 9.8 160 64-225 251-415 (939)
6 PLN03091 hypothetical protein; 99.9 4.3E-23 9.3E-28 209.0 7.9 116 48-170 1-117 (459)
7 PLN03212 Transcription repress 99.9 8.1E-23 1.7E-27 194.4 6.4 105 64-170 23-128 (249)
8 KOG0048 Transcription factor, 99.8 2.2E-21 4.8E-26 185.6 7.0 99 66-166 9-108 (238)
9 PF13921 Myb_DNA-bind_6: Myb-l 99.6 4.5E-16 9.7E-21 118.0 7.2 60 122-182 1-60 (60)
10 KOG0051 RNA polymerase I termi 99.6 4.1E-15 8.8E-20 156.6 11.1 151 68-220 309-511 (607)
11 KOG0050 mRNA splicing protein 99.5 2.3E-14 5E-19 147.2 6.7 104 117-221 5-108 (617)
12 COG5147 REB1 Myb superfamily p 99.5 3.4E-14 7.3E-19 148.3 7.8 107 114-220 15-121 (512)
13 KOG0051 RNA polymerase I termi 99.4 7.8E-13 1.7E-17 139.5 11.9 151 65-218 383-569 (607)
14 PF00249 Myb_DNA-binding: Myb- 99.4 3.4E-13 7.5E-18 98.3 5.1 47 119-165 1-48 (48)
15 COG5147 REB1 Myb superfamily p 99.4 4.1E-13 8.9E-18 140.3 6.5 148 69-218 22-169 (512)
16 PF00249 Myb_DNA-binding: Myb- 99.4 9E-13 2E-17 96.1 4.8 46 171-216 1-48 (48)
17 KOG0050 mRNA splicing protein 99.3 1E-12 2.2E-17 135.3 2.8 141 64-208 5-156 (617)
18 smart00717 SANT SANT SWI3, AD 99.1 5.4E-11 1.2E-15 84.2 4.9 47 171-217 1-48 (49)
19 PF13921 Myb_DNA-bind_6: Myb-l 99.1 2.9E-11 6.4E-16 91.6 3.6 59 71-130 2-60 (60)
20 smart00717 SANT SANT SWI3, AD 99.1 1.7E-10 3.8E-15 81.6 5.6 48 119-166 1-48 (49)
21 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 4.2E-10 9E-15 78.6 5.1 43 173-215 1-44 (45)
22 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 1.2E-09 2.6E-14 76.2 5.3 45 121-165 1-45 (45)
23 TIGR01557 myb_SHAQKYF myb-like 97.6 0.00012 2.6E-09 55.8 5.0 48 118-165 2-54 (57)
24 KOG0457 Histone acetyltransfer 97.6 8.8E-05 1.9E-09 76.3 5.1 48 169-216 70-118 (438)
25 TIGR01557 myb_SHAQKYF myb-like 97.5 0.00019 4.1E-09 54.8 5.6 46 171-216 3-54 (57)
26 KOG0457 Histone acetyltransfer 97.5 0.00011 2.3E-09 75.7 5.4 93 113-205 66-180 (438)
27 TIGR02894 DNA_bind_RsfA transc 97.3 0.00033 7.3E-09 63.7 5.5 54 170-224 3-63 (161)
28 PF13325 MCRS_N: N-terminal re 97.2 0.002 4.3E-08 60.8 8.9 99 121-221 1-131 (199)
29 PF13837 Myb_DNA-bind_4: Myb/S 96.8 0.0011 2.4E-08 53.4 3.3 50 171-221 1-68 (90)
30 PRK13923 putative spore coat p 96.8 0.0022 4.7E-08 59.2 5.4 57 169-226 3-66 (170)
31 COG5259 RSC8 RSC chromatin rem 96.8 0.0012 2.6E-08 68.7 4.0 46 170-215 278-323 (531)
32 KOG1279 Chromatin remodeling f 96.8 0.0016 3.4E-08 69.2 5.0 46 169-214 251-296 (506)
33 COG5259 RSC8 RSC chromatin rem 96.6 0.0023 5.1E-08 66.6 4.9 46 118-164 278-323 (531)
34 KOG1279 Chromatin remodeling f 96.6 0.0024 5.2E-08 67.8 4.8 47 117-164 251-297 (506)
35 PF08914 Myb_DNA-bind_2: Rap1 96.5 0.0034 7.4E-08 49.2 4.1 50 171-220 2-61 (65)
36 PF13837 Myb_DNA-bind_4: Myb/S 96.5 0.0037 8E-08 50.3 4.1 47 119-165 1-64 (90)
37 TIGR02894 DNA_bind_RsfA transc 96.4 0.003 6.5E-08 57.6 3.4 49 118-167 3-57 (161)
38 PF08914 Myb_DNA-bind_2: Rap1 96.0 0.0074 1.6E-07 47.3 3.7 51 119-169 2-61 (65)
39 PLN03142 Probable chromatin-re 95.9 0.05 1.1E-06 62.6 11.1 100 121-220 826-988 (1033)
40 COG5114 Histone acetyltransfer 95.7 0.0099 2.2E-07 59.5 4.0 46 172-217 64-110 (432)
41 PF13873 Myb_DNA-bind_5: Myb/S 95.5 0.044 9.4E-07 43.3 6.2 48 171-218 2-71 (78)
42 COG5114 Histone acetyltransfer 95.3 0.014 2.9E-07 58.6 3.4 50 117-166 61-110 (432)
43 PRK13923 putative spore coat p 94.9 0.022 4.7E-07 52.6 3.0 50 117-167 3-58 (170)
44 PF13873 Myb_DNA-bind_5: Myb/S 94.7 0.046 9.9E-07 43.2 4.1 47 119-165 2-69 (78)
45 KOG2656 DNA methyltransferase 92.9 0.15 3.2E-06 52.5 5.0 52 172-223 131-188 (445)
46 PF09111 SLIDE: SLIDE; InterP 92.7 0.18 3.9E-06 44.0 4.6 52 168-219 46-113 (118)
47 PF12776 Myb_DNA-bind_3: Myb/S 92.5 0.3 6.5E-06 39.6 5.5 45 173-217 1-63 (96)
48 KOG4282 Transcription factor G 90.5 0.44 9.5E-06 48.1 5.4 50 171-220 54-117 (345)
49 PF09111 SLIDE: SLIDE; InterP 88.0 0.77 1.7E-05 40.1 4.3 49 115-163 45-108 (118)
50 PF13325 MCRS_N: N-terminal re 86.7 1.6 3.4E-05 41.5 6.0 93 70-164 2-125 (199)
51 COG5118 BDP1 Transcription ini 85.4 1.1 2.5E-05 46.1 4.6 45 118-163 364-408 (507)
52 PF08281 Sigma70_r4_2: Sigma-7 83.9 2.6 5.6E-05 30.6 4.8 41 176-217 12-52 (54)
53 KOG1194 Predicted DNA-binding 83.8 1.7 3.6E-05 45.9 5.0 48 115-163 183-230 (534)
54 COG5118 BDP1 Transcription ini 83.6 2 4.3E-05 44.4 5.3 47 172-218 366-412 (507)
55 KOG1194 Predicted DNA-binding 82.5 9 0.0002 40.6 9.7 48 170-217 186-233 (534)
56 PF11626 Rap1_C: TRF2-interact 82.0 2 4.3E-05 35.2 3.9 30 115-147 43-80 (87)
57 KOG4282 Transcription factor G 81.6 2 4.2E-05 43.4 4.6 47 119-165 54-113 (345)
58 PF12776 Myb_DNA-bind_3: Myb/S 80.1 3.7 8.1E-05 33.2 4.9 44 121-164 1-61 (96)
59 PF13404 HTH_AsnC-type: AsnC-t 76.6 5.1 0.00011 28.5 4.1 38 125-163 3-40 (42)
60 PF13404 HTH_AsnC-type: AsnC-t 76.3 5.4 0.00012 28.4 4.2 38 177-215 3-41 (42)
61 KOG4167 Predicted DNA-binding 75.1 6 0.00013 44.1 6.1 43 172-214 620-662 (907)
62 smart00595 MADF subfamily of S 74.9 4.8 0.0001 32.1 4.1 25 193-218 30-54 (89)
63 KOG4167 Predicted DNA-binding 74.3 4.1 8.8E-05 45.4 4.6 43 120-163 620-662 (907)
64 PF11035 SnAPC_2_like: Small n 71.3 36 0.00079 34.7 10.0 87 118-217 20-127 (344)
65 PRK11179 DNA-binding transcrip 68.8 9.6 0.00021 34.0 5.0 45 176-221 8-53 (153)
66 PRK11179 DNA-binding transcrip 67.7 6.6 0.00014 35.0 3.7 45 124-169 8-52 (153)
67 PF04545 Sigma70_r4: Sigma-70, 66.4 15 0.00032 26.3 4.8 41 177-218 7-47 (50)
68 KOG4468 Polycomb-group transcr 65.8 10 0.00022 41.6 5.2 53 171-223 88-150 (782)
69 PRK11169 leucine-responsive tr 64.8 6.8 0.00015 35.4 3.3 45 124-169 13-57 (164)
70 PRK11169 leucine-responsive tr 63.0 12 0.00025 33.8 4.5 44 176-220 13-57 (164)
71 KOG4468 Polycomb-group transcr 61.6 14 0.00031 40.4 5.4 48 118-166 87-144 (782)
72 PF11035 SnAPC_2_like: Small n 60.2 32 0.0007 35.0 7.3 56 171-226 21-80 (344)
73 PF07750 GcrA: GcrA cell cycle 54.6 13 0.00029 34.0 3.3 41 173-214 2-42 (162)
74 PF11626 Rap1_C: TRF2-interact 54.4 4.9 0.00011 32.8 0.5 19 167-185 43-61 (87)
75 TIGR02985 Sig70_bacteroi1 RNA 53.6 27 0.0006 29.8 5.1 40 177-217 116-155 (161)
76 PF08281 Sigma70_r4_2: Sigma-7 51.8 23 0.00051 25.5 3.7 39 124-164 12-50 (54)
77 PF04504 DUF573: Protein of un 47.8 38 0.00082 28.4 4.8 47 172-218 5-64 (98)
78 KOG4329 DNA-binding protein [G 47.3 89 0.0019 32.7 8.1 43 172-214 278-321 (445)
79 PF10545 MADF_DNA_bdg: Alcohol 47.3 25 0.00054 27.1 3.4 26 193-218 29-55 (85)
80 PF01388 ARID: ARID/BRIGHT DNA 46.1 31 0.00068 27.8 4.0 37 181-217 40-89 (92)
81 PLN03142 Probable chromatin-re 45.5 29 0.00063 40.7 4.9 49 116-164 923-983 (1033)
82 smart00501 BRIGHT BRIGHT, ARID 44.2 46 0.00099 27.1 4.7 38 180-217 35-85 (93)
83 smart00595 MADF subfamily of S 44.1 17 0.00036 29.0 2.0 23 142-165 30-52 (89)
84 PF07638 Sigma70_ECF: ECF sigm 42.5 57 0.0012 29.8 5.5 41 177-218 138-178 (185)
85 smart00344 HTH_ASNC helix_turn 41.2 39 0.00085 27.7 3.9 44 177-221 3-47 (108)
86 PF07750 GcrA: GcrA cell cycle 41.1 39 0.00085 31.0 4.2 41 121-163 2-42 (162)
87 TIGR02937 sigma70-ECF RNA poly 40.4 52 0.0011 27.2 4.6 40 178-218 114-153 (158)
88 KOG3554 Histone deacetylase co 39.4 73 0.0016 34.2 6.3 63 89-162 265-328 (693)
89 smart00344 HTH_ASNC helix_turn 38.9 49 0.0011 27.1 4.2 43 125-168 3-45 (108)
90 KOG0384 Chromodomain-helicase 38.2 42 0.00091 39.9 4.7 73 120-198 1134-1207(1373)
91 KOG2656 DNA methyltransferase 38.0 20 0.00044 37.4 2.0 45 120-165 131-181 (445)
92 cd06171 Sigma70_r4 Sigma70, re 36.3 91 0.002 21.0 4.7 40 174-215 11-50 (55)
93 COG1522 Lrp Transcriptional re 35.2 54 0.0012 28.4 4.0 44 124-168 7-50 (154)
94 PRK09413 IS2 repressor TnpA; R 34.7 2E+02 0.0043 24.6 7.4 45 118-165 9-53 (121)
95 KOG2009 Transcription initiati 34.5 47 0.001 36.5 4.1 49 170-218 408-456 (584)
96 PRK09652 RNA polymerase sigma 34.2 75 0.0016 27.7 4.8 38 179-217 133-170 (182)
97 PF09197 Rap1-DNA-bind: Rap1, 34.0 1.6E+02 0.0034 25.4 6.5 57 173-229 1-88 (105)
98 PF02954 HTH_8: Bacterial regu 33.6 74 0.0016 22.2 3.8 35 177-212 5-39 (42)
99 PRK11924 RNA polymerase sigma 32.2 81 0.0018 27.4 4.7 36 181-217 132-167 (179)
100 PF04504 DUF573: Protein of un 31.6 1.7E+02 0.0036 24.6 6.2 69 119-188 4-94 (98)
101 PF09905 DUF2132: Uncharacteri 31.6 65 0.0014 25.3 3.4 48 127-182 12-62 (64)
102 cd08319 Death_RAIDD Death doma 31.4 56 0.0012 26.7 3.2 29 179-208 2-30 (83)
103 KOG2009 Transcription initiati 30.7 35 0.00076 37.4 2.4 49 114-163 404-452 (584)
104 PRK09643 RNA polymerase sigma 30.5 93 0.002 28.3 4.9 39 177-216 137-175 (192)
105 PRK04217 hypothetical protein; 30.5 1.1E+02 0.0023 26.5 4.9 44 172-217 41-84 (110)
106 cd08803 Death_ank3 Death domai 29.5 71 0.0015 26.1 3.5 29 179-208 4-32 (84)
107 KOG3841 TEF-1 and related tran 28.7 1.2E+02 0.0026 31.9 5.6 57 169-225 74-151 (455)
108 PF01466 Skp1: Skp1 family, di 28.0 93 0.002 24.7 3.9 35 142-183 36-70 (78)
109 TIGR02954 Sig70_famx3 RNA poly 27.8 1.1E+02 0.0023 26.9 4.7 40 178-218 123-162 (169)
110 COG1522 Lrp Transcriptional re 27.2 1.3E+02 0.0027 26.1 5.0 47 176-223 7-54 (154)
111 PRK09641 RNA polymerase sigma 26.8 1.1E+02 0.0024 27.1 4.7 39 178-217 140-178 (187)
112 PF02954 HTH_8: Bacterial regu 26.6 1.5E+02 0.0033 20.6 4.4 34 126-161 6-39 (42)
113 TIGR02939 RpoE_Sigma70 RNA pol 24.8 1E+02 0.0023 27.3 4.1 34 183-217 147-180 (190)
114 PRK09637 RNA polymerase sigma 24.5 1.4E+02 0.0029 27.0 4.8 40 177-217 109-148 (181)
115 PF09197 Rap1-DNA-bind: Rap1, 24.2 1.5E+02 0.0032 25.6 4.6 45 121-165 1-75 (105)
116 smart00351 PAX Paired Box doma 24.1 3.6E+02 0.0078 23.2 7.2 74 116-191 12-93 (125)
117 cd08317 Death_ank Death domain 23.9 74 0.0016 25.5 2.7 29 179-208 4-32 (84)
118 TIGR02948 SigW_bacill RNA poly 23.7 1.3E+02 0.0028 26.7 4.5 36 181-217 143-178 (187)
119 TIGR02943 Sig70_famx1 RNA poly 23.3 1.5E+02 0.0034 26.8 5.0 40 177-217 134-173 (188)
120 PRK09648 RNA polymerase sigma 23.2 1.6E+02 0.0034 26.4 5.0 30 187-217 152-181 (189)
121 PRK12529 RNA polymerase sigma 23.2 1.9E+02 0.0042 25.8 5.6 42 178-220 131-172 (178)
122 PRK09047 RNA polymerase factor 23.0 1.7E+02 0.0036 25.2 5.0 41 177-218 109-149 (161)
123 PRK12531 RNA polymerase sigma 22.9 1.6E+02 0.0035 26.7 5.0 35 182-217 149-183 (194)
124 PRK09645 RNA polymerase sigma 22.4 1.7E+02 0.0037 25.7 5.0 40 177-217 121-160 (173)
125 PRK12512 RNA polymerase sigma 22.3 1.7E+02 0.0036 26.1 5.0 40 178-218 135-174 (184)
126 PRK12515 RNA polymerase sigma 22.3 2.1E+02 0.0046 25.6 5.7 36 181-217 138-173 (189)
127 PRK09642 RNA polymerase sigma 22.2 1.7E+02 0.0038 25.3 4.9 40 177-217 109-148 (160)
128 PRK11923 algU RNA polymerase s 21.9 1.5E+02 0.0033 26.6 4.7 29 188-217 152-180 (193)
129 PF13340 DUF4096: Putative tra 21.9 73 0.0016 24.9 2.2 59 141-217 5-66 (75)
130 PRK12523 RNA polymerase sigma 21.7 1.8E+02 0.0039 25.7 5.0 41 178-219 123-163 (172)
131 PF09420 Nop16: Ribosome bioge 21.4 1.6E+02 0.0034 26.8 4.6 46 170-215 113-162 (164)
132 PRK12530 RNA polymerase sigma 20.8 1.8E+02 0.0039 26.3 4.9 40 177-217 137-176 (189)
133 KOG4329 DNA-binding protein [G 20.7 1.3E+02 0.0029 31.5 4.2 43 120-163 278-321 (445)
134 PRK06759 RNA polymerase factor 20.7 2E+02 0.0043 24.6 5.0 37 180-217 112-148 (154)
135 KOG0385 Chromatin remodeling c 20.6 1.4E+02 0.0031 34.2 4.8 48 170-217 894-957 (971)
136 cd08318 Death_NMPP84 Death dom 20.5 1.1E+02 0.0024 24.8 3.1 26 182-208 10-35 (86)
137 PRK00118 putative DNA-binding 20.3 5.5E+02 0.012 21.9 8.0 41 176-217 19-59 (104)
No 1
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.97 E-value=2.5e-31 Score=252.25 Aligned_cols=127 Identities=33% Similarity=0.609 Sum_probs=113.4
Q ss_pred cCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc-cCCChhhhhhhhhhccccccccCCCC
Q 047550 97 VDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL-EGRSGKSCRLRWFNQLDPRINKRAFS 175 (395)
Q Consensus 97 lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l-pgRt~~QCr~RW~~~L~p~l~kg~WT 175 (395)
|+.|+...|. ++.+++++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||
T Consensus 10 ~~~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT 82 (249)
T PLN03212 10 VSKKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82 (249)
T ss_pred CCCCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCC
Confidence 4455554443 456789999999999999999999988999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 047550 176 EDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRR 230 (395)
Q Consensus 176 ~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~~~~~~~~~ 230 (395)
+|||++|++++.+||++|+.||+.|+|||+++|||||+.++++++.+........
T Consensus 83 ~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~ 137 (249)
T PLN03212 83 SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTH 137 (249)
T ss_pred hHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999999999887765444333
No 2
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=5.8e-31 Score=251.57 Aligned_cols=109 Identities=37% Similarity=0.726 Sum_probs=105.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-CCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchh
Q 047550 116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWA 194 (395)
Q Consensus 116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-gRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs 194 (395)
.+.||+||+|||++|+++|++||.++|..|++.++ +|++++||.||.|||+|++++|.||+|||++|++++..+|++|+
T Consensus 6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs 85 (238)
T KOG0048|consen 6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS 85 (238)
T ss_pred cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence 35579999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 047550 195 MIARLFPGRTDNAVKNHWHVIMARKYREQS 224 (395)
Q Consensus 195 ~IA~~l~gRT~~qcknRw~~ilkkk~~~~~ 224 (395)
.||++|||||++.|||+|+..+|||+....
T Consensus 86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999887665
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=262.09 Aligned_cols=112 Identities=39% Similarity=0.809 Sum_probs=106.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc-cCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCc
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL-EGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNK 192 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l-pgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~k 192 (395)
+..++||+||+|||++|+++|.+||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++++||++
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK 88 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence 367889999999999999999999999999999998 5999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHhhhh
Q 047550 193 WAMIARLFPGRTDNAVKNHWHVIMARKYREQSS 225 (395)
Q Consensus 193 Ws~IA~~l~gRT~~qcknRw~~ilkkk~~~~~~ 225 (395)
|++||+.|+|||+++|||||+.+++++++....
T Consensus 89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~~I 121 (459)
T PLN03091 89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI 121 (459)
T ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998876543
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.90 E-value=4.2e-24 Score=222.15 Aligned_cols=149 Identities=25% Similarity=0.423 Sum_probs=136.0
Q ss_pred CCCcchhHHHHHhcC---CCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHH
Q 047550 71 CDSSDHQKSDLAAGG---DSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAE 147 (395)
Q Consensus 71 ~~~eD~~L~~lv~~~---~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk 147 (395)
++++|-+|+.+|... .+.+|.+|-..||||+..|...||.+.|+|.+++|+||++||.+|+.+|.+||.+.|.+|-.
T Consensus 309 sEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~ 388 (939)
T KOG0049|consen 309 SEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQ 388 (939)
T ss_pred chhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHH
Confidence 488899999888754 55699999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550 148 KLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 148 ~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk 219 (395)
.+|||++.|||+||.+.|....+++.||-.||+.|+.+|++|| +.|.+||..||+||..|.+.|=..++.-+
T Consensus 389 ~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k 461 (939)
T KOG0049|consen 389 AVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAK 461 (939)
T ss_pred hcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 78999999999999966544433333333
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.89 E-value=2.6e-23 Score=216.30 Aligned_cols=160 Identities=19% Similarity=0.363 Sum_probs=144.5
Q ss_pred ccCCcccCCCcchhHHHHHhcCCCCChHHHHhhcC-CCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--
Q 047550 64 TSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVD-GYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQ-- 140 (395)
Q Consensus 64 ~~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lp-gRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~-- 140 (395)
+-+.-|. .+||++|..+...++..+|..||..++ +|+..||..++...++. +....||+|||.+|+.+|++...+
T Consensus 251 ~nk~~WS-~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~-L~ekeWsEEed~kL~alV~~~~~nSh 328 (939)
T KOG0049|consen 251 WNKEHWS-NEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQ-LSEKEWSEEEDTKLIALVKITSINSH 328 (939)
T ss_pred cchhccC-hHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHH-HHhhhcchhhhHHHHHHHHHhhccCc
Confidence 3345554 899999999999999999999999998 69999999998876554 455799999999999999998644
Q ss_pred -hHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCc-hhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 141 -NWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNK-WAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 141 -nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~k-Ws~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
+|.+|-.+||||+..|...||...|+|.+++|.||.+||.+|+.+|.+||++ |.+|-..+|||++.|||.||.+.|.+
T Consensus 329 I~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 329 IQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNR 408 (939)
T ss_pred cchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999976 99999999999999999999999988
Q ss_pred HHHhhhh
Q 047550 219 KYREQSS 225 (395)
Q Consensus 219 k~~~~~~ 225 (395)
..+...+
T Consensus 409 s~K~~rW 415 (939)
T KOG0049|consen 409 SAKVERW 415 (939)
T ss_pred hhccCce
Confidence 7766544
No 6
>PLN03091 hypothetical protein; Provisional
Probab=99.88 E-value=4.3e-23 Score=209.01 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=103.6
Q ss_pred ccccccCCCCCCCCccccCCcccCCCcchhHHHHHhcCCCCChHHHHhhcC-CCCchhHHHHhhcCCCCCCCCCCCCHHH
Q 047550 48 MGSLSASPRKNSGHIVTSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVD-GYEDMEDVKKMDGGLSKVCSRGHWRPAE 126 (395)
Q Consensus 48 ~~s~~~~~~~~~~h~~~~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lp-gRt~~qcr~Rw~~~l~p~~~kg~WT~EE 126 (395)
||+..+..... +.++.|+ ++||++|+.+|.++|..+|..||+.++ +|+++||+.||.++|+|.+++|+||+||
T Consensus 1 mgr~~Cc~Kqk-----lrKg~WT-pEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EE 74 (459)
T PLN03091 1 MGRHSCCYKQK-----LRKGLWS-PEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQE 74 (459)
T ss_pred CCCCccCcCCC-----CcCCCCC-HHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHH
Confidence 56666655544 5666665 999999999999999999999999985 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccc
Q 047550 127 DSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 170 (395)
Q Consensus 127 D~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~ 170 (395)
|++|++++.+|| .+|.+||+.|+||++.+|++||+.+|++.++
T Consensus 75 D~lLLeL~k~~G-nKWskIAk~LPGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 75 ENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred HHHHHHHHHHhC-cchHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 5699999999999999999999988765433
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.87 E-value=8.1e-23 Score=194.39 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=96.1
Q ss_pred ccCCcccCCCcchhHHHHHhcCCCCChHHHHhhc-CCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChH
Q 047550 64 TSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESV-DGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNW 142 (395)
Q Consensus 64 ~~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~l-pgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW 142 (395)
+++.-|+ ++||++|..+|.+++..+|.+||+.+ ++|+++||+.||.++|+|.+++++||+|||++|++++..|| .+|
T Consensus 23 lKRg~WT-~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~G-nKW 100 (249)
T PLN03212 23 MKRGPWT-VEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLG-NRW 100 (249)
T ss_pred CcCCCCC-HHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcc-ccH
Confidence 4455554 89999999999999999999999998 49999999999999999999999999999999999999999 569
Q ss_pred HHHHHHccCCChhhhhhhhhhccccccc
Q 047550 143 NLIAEKLEGRSGKSCRLRWFNQLDPRIN 170 (395)
Q Consensus 143 ~kIAk~lpgRt~~QCr~RW~~~L~p~l~ 170 (395)
..||+.|||||+.+|++||..+|++.+.
T Consensus 101 s~IAk~LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 101 SLIAGRIPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999988765433
No 8
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.84 E-value=2.2e-21 Score=185.62 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=93.5
Q ss_pred CCcccCCCcchhHHHHHhcCCCCChHHHHhhcC-CCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHH
Q 047550 66 QNICYCDSSDHQKSDLAAGGDSDNNNKVDESVD-GYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNL 144 (395)
Q Consensus 66 k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lp-gRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~k 144 (395)
++-|+ ++||++|.++|.++|..+|..|++.++ +|++++||.||.++|+|.++||.||+|||++|++++.++| ..|..
T Consensus 9 kGpWt-~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~ 86 (238)
T KOG0048|consen 9 KGPWT-QEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSL 86 (238)
T ss_pred CCCCC-hHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHH
Confidence 46565 999999999999999999999999999 9999999999999999999999999999999999999999 56999
Q ss_pred HHHHccCCChhhhhhhhhhccc
Q 047550 145 IAEKLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 145 IAk~lpgRt~~QCr~RW~~~L~ 166 (395)
||++|||||++.++++|...|+
T Consensus 87 IA~~LPGRTDNeIKN~Wnt~lk 108 (238)
T KOG0048|consen 87 IAGRLPGRTDNEVKNHWNTHLK 108 (238)
T ss_pred HHhhCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999976653
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.64 E-value=4.5e-16 Score=118.04 Aligned_cols=60 Identities=45% Similarity=0.906 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHH
Q 047550 122 WRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERL 182 (395)
Q Consensus 122 WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~L 182 (395)
||+|||++|+++|..|| .+|.+||+.|+.|++.+|+.||.+.|++.+++++||++||++|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 6899999999669999999999999999999999999999987
No 10
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.59 E-value=4.1e-15 Score=156.59 Aligned_cols=151 Identities=21% Similarity=0.380 Sum_probs=124.3
Q ss_pred cccCCCcchhHHHHHhcCC---------------CC--------ChHHHHhhcCCCCchhHHHHhhcCCCCCC-CCCCCC
Q 047550 68 ICYCDSSDHQKSDLAAGGD---------------SD--------NNNKVDESVDGYEDMEDVKKMDGGLSKVC-SRGHWR 123 (395)
Q Consensus 68 i~~~~~eD~~L~~lv~~~~---------------~~--------dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~-~kg~WT 123 (395)
..|..++|..+...|..+- +. .|+.|...||-|+....+..-++...+-- .+|.||
T Consensus 309 ~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~wt 388 (607)
T KOG0051|consen 309 KKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKWT 388 (607)
T ss_pred hhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCCCC
Confidence 4455677777776555441 11 47889999999999888875444434433 999999
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccccc--ccCCCCHHHHHHHHHHHH-------Hc-----
Q 047550 124 PAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI--NKRAFSEDEEERLMAAHR-------VY----- 189 (395)
Q Consensus 124 ~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l--~kg~WT~EED~~Ll~lv~-------~~----- 189 (395)
+||++.|..+|.++| +.|..|++.| ||.+..|++||+++....- +++.||.||++.|+++|. .+
T Consensus 389 ~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~ 466 (607)
T KOG0051|consen 389 PEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNT 466 (607)
T ss_pred cchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999 6799999999 9999999999999998874 899999999999999995 23
Q ss_pred --------------CCchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 190 --------------GNKWAMIARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 190 --------------G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
+-.|..|++.+++|+..|||.+|++++....
T Consensus 467 ~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s 511 (607)
T KOG0051|consen 467 DTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPS 511 (607)
T ss_pred chhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHH
Confidence 1249999999999999999999999997654
No 11
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.3e-14 Score=147.24 Aligned_cols=104 Identities=32% Similarity=0.638 Sum_probs=99.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhh
Q 047550 117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMI 196 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~I 196 (395)
++.|.|+.-||+.|...|.+||...|.+|++.++-.++.||+.||..+|+|.+++..|+.|||++||.+.+.+...|..|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI 84 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI 84 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence 46789999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Q 047550 197 ARLFPGRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 197 A~~l~gRT~~qcknRw~~ilkkk~~ 221 (395)
+..| ||+.+||-.||+.++-....
T Consensus 85 a~i~-gr~~~qc~eRy~~ll~~~~s 108 (617)
T KOG0050|consen 85 ADIM-GRTSQQCLERYNNLLDVYVS 108 (617)
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHh
Confidence 9999 99999999999999965443
No 12
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.49 E-value=3.4e-14 Score=148.33 Aligned_cols=107 Identities=31% Similarity=0.590 Sum_probs=100.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCch
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKW 193 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW 193 (395)
....+.|.|+..||+.|..+|++||+.+|..||..|.-|+++||+.||.++++|.++++.|+.|||+.|+.+..++|..|
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w 94 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence 34567889999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 194 AMIARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 194 s~IA~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
+.||..+++||..+|.+||...+....
T Consensus 95 stia~~~d~rt~~~~~ery~~~~~~~~ 121 (512)
T COG5147 95 STIADYKDRRTAQQCVERYVNTLEDLS 121 (512)
T ss_pred hhhccccCccchHHHHHHHHHHhhhhh
Confidence 999999999999999999997775433
No 13
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.42 E-value=7.8e-13 Score=139.53 Aligned_cols=151 Identities=20% Similarity=0.372 Sum_probs=127.9
Q ss_pred cCCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCC--CCCCCCHHHHHHHHHHHH-------
Q 047550 65 SQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVC--SRGHWRPAEDSKLKELVA------- 135 (395)
Q Consensus 65 ~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~--~kg~WT~EED~~L~~lV~------- 135 (395)
.++.|+ +++++.|..+|.++| .+|.+|+..| ||.+..|+.||+++....- ++|.||.||+++|+++|+
T Consensus 383 ~rg~wt-~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWT-PEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCC-cchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 356664 899999999999998 7999999999 8899999999999988874 999999999999999996
Q ss_pred Hh------------------CCChHHHHHHHccCCChhhhhhhhhhcc-ccccccCCCCH-HHHHHHHHHHHHcCC----
Q 047550 136 LY------------------GPQNWNLIAEKLEGRSGKSCRLRWFNQL-DPRINKRAFSE-DEEERLMAAHRVYGN---- 191 (395)
Q Consensus 136 ~y------------------G~~nW~kIAk~lpgRt~~QCr~RW~~~L-~p~l~kg~WT~-EED~~Ll~lv~~~G~---- 191 (395)
.+ ..-+|..|++.+.+|+..|||.+|..++ .+..+.+.|.. .+.-.|++-+..++.
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~ 539 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEES 539 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCC
Confidence 22 1125999999999999999999999876 45667777876 466677777777662
Q ss_pred --chhhhhhcCCCCC-HHHHHHHHHHHHHH
Q 047550 192 --KWAMIARLFPGRT-DNAVKNHWHVIMAR 218 (395)
Q Consensus 192 --kWs~IA~~l~gRT-~~qcknRw~~ilkk 218 (395)
.|..|+...||.. +.+|+.+|..+.+.
T Consensus 540 ~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~ 569 (607)
T KOG0051|consen 540 PIDWKSLAEYAPGESTGEELRLQFERLKKK 569 (607)
T ss_pred ccCHHHHHHhCCCCCcHHHHHHHHHhHhhc
Confidence 4999999999988 99999999888765
No 14
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.40 E-value=3.4e-13 Score=98.34 Aligned_cols=47 Identities=49% Similarity=0.906 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-CCChhhhhhhhhhcc
Q 047550 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQL 165 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-gRt~~QCr~RW~~~L 165 (395)
|++||+|||++|+++|.+||..+|..||..|+ +||..||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999777999999999 999999999999875
No 15
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.38 E-value=4.1e-13 Score=140.27 Aligned_cols=148 Identities=17% Similarity=0.216 Sum_probs=133.0
Q ss_pred ccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHH
Q 047550 69 CYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEK 148 (395)
Q Consensus 69 ~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~ 148 (395)
.+...||+.|..+|.+.+..+|..||..+..+++++|+.||..+++|.++++.|+.|||+.|+.+..++|+. |..||..
T Consensus 22 sw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~ 100 (512)
T COG5147 22 SWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADY 100 (512)
T ss_pred CCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccc
Confidence 345899999999999999999999999999999999999999999999999999999999999999999965 9999999
Q ss_pred ccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 149 LEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 149 lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
+++|+..+|.+||.+.+.+... .+|+..++...+..+..|+..|.++......+-...|.+++..+...
T Consensus 101 ~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~ 169 (512)
T COG5147 101 KDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLR 169 (512)
T ss_pred cCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHH
Confidence 9999999999999999987655 88999888888888888888888888777777788888888666544
No 16
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.35 E-value=9e-13 Score=96.12 Aligned_cols=46 Identities=30% Similarity=0.764 Sum_probs=41.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCc-hhhhhhcCC-CCCHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHVIM 216 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~k-Ws~IA~~l~-gRT~~qcknRw~~il 216 (395)
+++||+|||++|+++|.+||.. |..||..|+ |||..||++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999998764
No 17
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1e-12 Score=135.29 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=111.6
Q ss_pred ccCCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHH
Q 047550 64 TSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWN 143 (395)
Q Consensus 64 ~~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~ 143 (395)
+..+.| +..||+.|...|+++|...|.+|++.++..+++||+.||..+++|.+++..|+.|||++|+-+.....+. |.
T Consensus 5 ~kggvw-rntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~q-wr 82 (617)
T KOG0050|consen 5 IKGGVW-RNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQ-WR 82 (617)
T ss_pred Eeccee-cccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCc-cc
Confidence 445555 4889999999999999999999999999999999999999999999999999999999999999999855 99
Q ss_pred HHHHHccCCChhhhhhhhhhccccccccC----------CCCHHHH-HHHHHHHHHcCCchhhhhhcCCCCCHHHH
Q 047550 144 LIAEKLEGRSGKSCRLRWFNQLDPRINKR----------AFSEDEE-ERLMAAHRVYGNKWAMIARLFPGRTDNAV 208 (395)
Q Consensus 144 kIAk~lpgRt~~QCr~RW~~~L~p~l~kg----------~WT~EED-~~Ll~lv~~~G~kWs~IA~~l~gRT~~qc 208 (395)
.|+..| ||+..||.+||.++|....... -|-.|=| ..+...++-.|.+|..+-..| .++...|
T Consensus 83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ePn~e~~~aRpd~~dmdEde~eM-l~eaRar 156 (617)
T KOG0050|consen 83 TIADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEIEPNQETNPARPDGFDMDEDEGEM-LSEARAR 156 (617)
T ss_pred hHHHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcCCCccccccccCCcccchHHHHHH-HHHHHHH
Confidence 999999 9999999999999875433222 1333333 334444555566676666655 3444444
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.14 E-value=5.4e-11 Score=84.25 Aligned_cols=47 Identities=34% Similarity=0.781 Sum_probs=44.2
Q ss_pred cCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+++||++||.+|+.++.+|| .+|..||..|++||+.+|++||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998763
No 19
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.14 E-value=2.9e-11 Score=91.56 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=52.7
Q ss_pred CCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHH
Q 047550 71 CDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKL 130 (395)
Q Consensus 71 ~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L 130 (395)
+.+||..|..+|..++ .+|.+||+.|+.|+..+|+.||...|.+...+++||++||++|
T Consensus 2 T~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 2 TKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp -HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 3678999999999888 5899999999779999999999999999999999999999987
No 20
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.09 E-value=1.7e-10 Score=81.63 Aligned_cols=48 Identities=48% Similarity=0.931 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccc
Q 047550 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~ 166 (395)
++.||++||.+|+.++..||..+|..||..|++|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 468999999999999999997779999999999999999999998764
No 21
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.02 E-value=4.2e-10 Score=78.57 Aligned_cols=43 Identities=37% Similarity=0.842 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVI 215 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~i 215 (395)
+||+|||..|+.++.++| .+|..||..|++||..+|++||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 8999999999999999999999875
No 22
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.96 E-value=1.2e-09 Score=76.22 Aligned_cols=45 Identities=49% Similarity=0.870 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550 121 HWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
+||++||+.|+.++..+|..+|..||+.|++|+..+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999778999999999999999999998753
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.59 E-value=0.00012 Score=55.83 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChH---HHHHHHcc-CC-Chhhhhhhhhhcc
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQNW---NLIAEKLE-GR-SGKSCRLRWFNQL 165 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~nW---~kIAk~lp-gR-t~~QCr~RW~~~L 165 (395)
.+-.||+||..+++++++.+|.++| ..|++.|. .| |..||+.+.+.+.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999997799 99999984 45 9999999988764
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.56 E-value=8.8e-05 Score=76.32 Aligned_cols=48 Identities=29% Similarity=0.475 Sum_probs=44.4
Q ss_pred cccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHH
Q 047550 169 INKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIM 216 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~il 216 (395)
+-...||.+||.+||+++..|| ++|..||.+++.||..+|+.+|.++.
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 4456899999999999999999 99999999999999999999998776
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.55 E-value=0.00019 Score=54.77 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCC-ch---hhhhhcCC-CC-CHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYGN-KW---AMIARLFP-GR-TDNAVKNHWHVIM 216 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~-kW---s~IA~~l~-gR-T~~qcknRw~~il 216 (395)
+-.||+||..++++++..+|. +| ..|++.|. .| |..||+.+.+++.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 457999999999999999996 99 99999874 45 9999999997765
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.54 E-value=0.00011 Score=75.74 Aligned_cols=93 Identities=22% Similarity=0.346 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccc-ccccCCC-------CHHHHHHHHH
Q 047550 113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP-RINKRAF-------SEDEEERLMA 184 (395)
Q Consensus 113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p-~l~kg~W-------T~EED~~Ll~ 184 (395)
++-.+-...||.+|+-+|+++++.||-+||..||.+++.|+..+|+++|.+++-. .+-.-+| ...||..+-.
T Consensus 66 ~s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k 145 (438)
T KOG0457|consen 66 NSFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAK 145 (438)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhcc
Confidence 3445667799999999999999999999999999999999999999999986532 1211122 3444444433
Q ss_pred H-HHHcCC-------------chhhhhhcCCCCCH
Q 047550 185 A-HRVYGN-------------KWAMIARLFPGRTD 205 (395)
Q Consensus 185 l-v~~~G~-------------kWs~IA~~l~gRT~ 205 (395)
. +..++. .=.+|+.+||+|.+
T Consensus 146 ~~~~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~d 180 (438)
T KOG0457|consen 146 NRAEPFQPTDLVPRKPGVSNPLRREISGYMPGRLD 180 (438)
T ss_pred cccccCCCCCCCCCCCCCCCchHHHHhhhCccchh
Confidence 3 222222 13578888888865
No 27
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.34 E-value=0.00033 Score=63.71 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=47.3
Q ss_pred ccCCCCHHHHHHHHHHHHHc---CC----chhhhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 047550 170 NKRAFSEDEEERLMAAHRVY---GN----KWAMIARLFPGRTDNAVKNHWHVIMARKYREQS 224 (395)
Q Consensus 170 ~kg~WT~EED~~Ll~lv~~~---G~----kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~~~ 224 (395)
....||.|||.+|-+.|..| |+ -+..++..| +||.-.|.=||+..+|+.|...-
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~i 63 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEAI 63 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHHH
Confidence 45689999999999999887 43 289999999 99999999999999999997653
No 28
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.17 E-value=0.002 Score=60.84 Aligned_cols=99 Identities=21% Similarity=0.396 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHc---cCCChhhhhhhhhhccc-cc--------------------cccCCCCH
Q 047550 121 HWRPAEDSKLKELVALYGPQNWNLIAEKL---EGRSGKSCRLRWFNQLD-PR--------------------INKRAFSE 176 (395)
Q Consensus 121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~l---pgRt~~QCr~RW~~~L~-p~--------------------l~kg~WT~ 176 (395)
+|++++|-+|+..|..-. +-..|+.-+ ..-|...+.+||+.+|- |. ..+..||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998764 577777666 34678889999998762 21 24568999
Q ss_pred HHHHHHHHHHHHcCC---chhhhhh----cC-CCCCHHHHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGN---KWAMIAR----LF-PGRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 177 EED~~Ll~lv~~~G~---kWs~IA~----~l-~gRT~~qcknRw~~ilkkk~~ 221 (395)
+||+.|......... .+.+|-. .| ++||+.++.++|+.+.+..+.
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL 131 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL 131 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence 999999997766543 3777643 23 789999999999976655543
No 29
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.80 E-value=0.0011 Score=53.36 Aligned_cols=50 Identities=24% Similarity=0.574 Sum_probs=34.7
Q ss_pred cCCCCHHHHHHHHHHHHH------cC--C------chhhhhhcC----CCCCHHHHHHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRV------YG--N------KWAMIARLF----PGRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~------~G--~------kWs~IA~~l----~gRT~~qcknRw~~ilkkk~~ 221 (395)
+..||.+|...||+++.+ ++ + -|..||..| ..||+.||++||.+|.+ .++
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~-~Yk 68 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK-KYK 68 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHH
Confidence 357999999999999877 21 1 299999876 35999999999998764 443
No 30
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=96.79 E-value=0.0022 Score=59.15 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=47.6
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCc-------hhhhhhcCCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 047550 169 INKRAFSEDEEERLMAAHRVYGNK-------WAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA 226 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G~k-------Ws~IA~~l~gRT~~qcknRw~~ilkkk~~~~~~~ 226 (395)
.+...||.|||.+|-+.|..|+.. ...++..| +||.-+|..||+.+++++|...-..
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee~I~~ 66 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQEQIKL 66 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 346789999999999999888732 67777888 8999999999999999998765443
No 31
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.78 E-value=0.0012 Score=68.75 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=42.5
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550 170 NKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI 215 (395)
Q Consensus 170 ~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i 215 (395)
....||.+|..+|++++..||..|.+||.++++||..||--||.++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 3458999999999999999999999999999999999999999664
No 32
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.78 E-value=0.0016 Score=69.23 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=42.0
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHH
Q 047550 169 INKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHV 214 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ 214 (395)
..+..||++|..+|++++..||..|.+||.++++||..||--+|..
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR 296 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence 3467899999999999999999999999999999999999888743
No 33
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.63 E-value=0.0023 Score=66.60 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhc
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ 164 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~ 164 (395)
....||.+|..+|++.++.|| .+|.+||.++++|+..||..|+.++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 345899999999999999999 6799999999999999999999874
No 34
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.58 E-value=0.0024 Score=67.82 Aligned_cols=47 Identities=28% Similarity=0.680 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhc
Q 047550 117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ 164 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~ 164 (395)
..++.||.+|..+|++.|+.|| .+|.+||.++.+||..||-.++.++
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence 3567899999999999999999 6799999999999999999999864
No 35
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.52 E-value=0.0034 Score=49.16 Aligned_cols=50 Identities=12% Similarity=0.306 Sum_probs=32.4
Q ss_pred cCCCCHHHHHHHHHHHHHcC-------Cc--hhhhhhcCC-CCCHHHHHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYG-------NK--WAMIARLFP-GRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G-------~k--Ws~IA~~l~-gRT~~qcknRw~~ilkkk~ 220 (395)
+.+||.|||..|++.|+++. ++ |.++++.-+ .+|-...|+||.+.|+.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 45899999999999997652 12 999998877 8999999999988776544
No 36
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.46 E-value=0.0037 Score=50.32 Aligned_cols=47 Identities=34% Similarity=0.581 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHH--h----C--CC-----hHHHHHHHcc----CCChhhhhhhhhhcc
Q 047550 119 RGHWRPAEDSKLKELVAL--Y----G--PQ-----NWNLIAEKLE----GRSGKSCRLRWFNQL 165 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~--y----G--~~-----nW~kIAk~lp----gRt~~QCr~RW~~~L 165 (395)
|..||.+|...|+.++.. + + .. -|..||..|. .||+.||+.+|.++.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 357999999999999988 2 1 11 3999999993 599999999998764
No 37
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.37 E-value=0.003 Score=57.60 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC------hHHHHHHHccCCChhhhhhhhhhcccc
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQ------NWNLIAEKLEGRSGKSCRLRWFNQLDP 167 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~------nW~kIAk~lpgRt~~QCr~RW~~~L~p 167 (395)
+...||.|||.+|.+.|-.|-.. -+.+|++.| +||...|.-||+.+++.
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRK 57 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHH
Confidence 56789999999999999998321 389999999 99999999999998864
No 38
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.04 E-value=0.0074 Score=47.27 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC------C--hHHHHHHHcc-CCChhhhhhhhhhcccccc
Q 047550 119 RGHWRPAEDSKLKELVALYGP------Q--NWNLIAEKLE-GRSGKSCRLRWFNQLDPRI 169 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~yG~------~--nW~kIAk~lp-gRt~~QCr~RW~~~L~p~l 169 (395)
+.+||.|||+.|++.|..+.. + =|.++++.-+ .+|-.+-|+||.+.|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 458999999999999976521 1 2999999987 8999999999999887643
No 39
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.92 E-value=0.05 Score=62.65 Aligned_cols=100 Identities=13% Similarity=0.317 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhh-------hhhhc------c----------------------
Q 047550 121 HWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRL-------RWFNQ------L---------------------- 165 (395)
Q Consensus 121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~-------RW~~~------L---------------------- 165 (395)
.|+.-+=..++.+..+||..+-..||..|.|++...++. ||..+ +
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~ 905 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK 905 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999889999999999999988874 21111 0
Q ss_pred ------c---------cccccCCCCHHHHHHHHHHHHHcC-Cchhhhhh------------cCCCCCHHHHHHHHHHHHH
Q 047550 166 ------D---------PRINKRAFSEDEEERLMAAHRVYG-NKWAMIAR------------LFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 166 ------~---------p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~------------~l~gRT~~qcknRw~~ilk 217 (395)
+ +..++..||+|||..|+-.+.+|| ++|.+|-. .|..||+..+..|..++++
T Consensus 906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 0 112344699999999999999999 78999843 2468999999999999997
Q ss_pred HHH
Q 047550 218 RKY 220 (395)
Q Consensus 218 kk~ 220 (395)
-.-
T Consensus 986 ~~~ 988 (1033)
T PLN03142 986 LIE 988 (1033)
T ss_pred HHH
Confidence 653
No 40
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.73 E-value=0.0099 Score=59.52 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 172 RAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
..|+.+|+.+|++.+.-.| ++|..||.+++.|+...||.+|.++..
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 4699999999999999999 899999999999999999999987663
No 41
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.51 E-value=0.044 Score=43.33 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHHHHHcC----C-------------chhhhhhcC-----CCCCHHHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYG----N-------------KWAMIARLF-----PGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G----~-------------kWs~IA~~l-----~gRT~~qcknRw~~ilkk 218 (395)
+..||.+|.+.|+++|.+|. + -|..|+..| +.||..+|+.+|..+...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 45799999999999998862 1 299999865 349999999999988754
No 42
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.34 E-value=0.014 Score=58.58 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccc
Q 047550 117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~ 166 (395)
+--..|+.+|+-+|++.....|-+||..||.+++.|+...|+++|.+++.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 34458999999999999999999999999999999999999999998765
No 43
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.87 E-value=0.022 Score=52.64 Aligned_cols=50 Identities=20% Similarity=0.445 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC------hHHHHHHHccCCChhhhhhhhhhcccc
Q 047550 117 CSRGHWRPAEDSKLKELVALYGPQ------NWNLIAEKLEGRSGKSCRLRWFNQLDP 167 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG~~------nW~kIAk~lpgRt~~QCr~RW~~~L~p 167 (395)
.++..||.|||.+|.+.|-.|+.. -...++..| +|+..+|..||+.+++.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk 58 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRK 58 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHH
Confidence 356799999999999999998633 266777777 89999999999877764
No 44
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.69 E-value=0.046 Score=43.21 Aligned_cols=47 Identities=32% Similarity=0.413 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-----C-----------hHHHHHHHcc-----CCChhhhhhhhhhcc
Q 047550 119 RGHWRPAEDSKLKELVALYGP-----Q-----------NWNLIAEKLE-----GRSGKSCRLRWFNQL 165 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~yG~-----~-----------nW~kIAk~lp-----gRt~~QCr~RW~~~L 165 (395)
+..||.+|...|+++|.+|.. . -|..|+..|. .|+..+++.+|.++.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 458999999999999999821 0 2999999992 499999999998765
No 45
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=92.91 E-value=0.15 Score=52.51 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhhhhhc-----CCC-CCHHHHHHHHHHHHHHHHHhh
Q 047550 172 RAFSEDEEERLMAAHRVYGNKWAMIARL-----FPG-RTDNAVKNHWHVIMARKYREQ 223 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~-----l~g-RT~~qcknRw~~ilkkk~~~~ 223 (395)
..||.||-+-|+++++.|.-+|-.||.. ++. ||-..+|+||+.+.++-++..
T Consensus 131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 6899999999999999999999999976 666 999999999999997766443
No 46
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=92.65 E-value=0.18 Score=43.96 Aligned_cols=52 Identities=23% Similarity=0.453 Sum_probs=41.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHcCC----chhhhhhc------------CCCCCHHHHHHHHHHHHHHH
Q 047550 168 RINKRAFSEDEEERLMAAHRVYGN----KWAMIARL------------FPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 168 ~l~kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~------------l~gRT~~qcknRw~~ilkkk 219 (395)
..++..||+|||.-|+-.+.+||- .|..|-.. |..||+..+..|-..+++-.
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 455678999999999999999995 69888642 46799999999999999643
No 47
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=92.49 E-value=0.3 Score=39.65 Aligned_cols=45 Identities=27% Similarity=0.494 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHc---CC----------chhhhhhcC---CC--CCHHHHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVY---GN----------KWAMIARLF---PG--RTDNAVKNHWHVIMA 217 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~---G~----------kWs~IA~~l---~g--RT~~qcknRw~~ilk 217 (395)
.||+++++.|++++.+. |+ .|..|+..| .| .|..||++||..+.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 49999999999998653 21 199998876 23 578999999866653
No 48
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=90.48 E-value=0.44 Score=48.11 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHHHHHcC----------CchhhhhhcC----CCCCHHHHHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYG----------NKWAMIARLF----PGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G----------~kWs~IA~~l----~gRT~~qcknRw~~ilkkk~ 220 (395)
...|+.+|-..||++..+.. .-|..||..+ .-||+.+||++|.++.++-.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk 117 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYK 117 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 36899999999999976532 2399999854 23999999999999885533
No 49
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=87.96 E-value=0.77 Score=40.07 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=37.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---ChHHHHHHHc---c---------CCChhhhhhhhhh
Q 047550 115 KVCSRGHWRPAEDSKLKELVALYGP---QNWNLIAEKL---E---------GRSGKSCRLRWFN 163 (395)
Q Consensus 115 p~~~kg~WT~EED~~L~~lV~~yG~---~nW~kIAk~l---p---------gRt~~QCr~RW~~ 163 (395)
+..++..||.+||.-|+-.+.+||- +.|.+|-..+ | .||+..+..|-..
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t 108 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT 108 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence 3667889999999999999999998 7899998766 2 4777777777544
No 50
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=86.71 E-value=1.6 Score=41.50 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=65.8
Q ss_pred cCCCcchhHHHHHhcCCCCChHHHHhhcC---CCCchhHHHHhhcCC-CC--------------------CCCCCCCCHH
Q 047550 70 YCDSSDHQKSDLAAGGDSDNNNKVDESVD---GYEDMEDVKKMDGGL-SK--------------------VCSRGHWRPA 125 (395)
Q Consensus 70 ~~~~eD~~L~~lv~~~~~~dW~~IA~~lp---gRt~~qcr~Rw~~~l-~p--------------------~~~kg~WT~E 125 (395)
+++..|..|+..|.+.. +-..|+..+. ..+-.....||+..+ +| .-.+-+||.+
T Consensus 2 W~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~~ 79 (199)
T PF13325_consen 2 WKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSKE 79 (199)
T ss_pred CCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCHH
Confidence 34777888998888876 6777777765 456666777885431 11 2245789999
Q ss_pred HHHHHHHHHHHhCC--ChHHHHHHH----c-cCCChhhhhhhhhhc
Q 047550 126 EDSKLKELVALYGP--QNWNLIAEK----L-EGRSGKSCRLRWFNQ 164 (395)
Q Consensus 126 ED~~L~~lV~~yG~--~nW~kIAk~----l-pgRt~~QCr~RW~~~ 164 (395)
|++.|........+ ..+.+|-.. | ++||+++...+|+..
T Consensus 80 EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lm 125 (199)
T PF13325_consen 80 EEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLM 125 (199)
T ss_pred HHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHH
Confidence 99999997765532 246666432 3 579999999999864
No 51
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=85.42 E-value=1.1 Score=46.12 Aligned_cols=45 Identities=18% Similarity=0.446 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~ 163 (395)
.--+||.+|-++..++...+| -++..|+..+|.|..+|++.+|.+
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHH
Confidence 345899999999999999999 569999999999999999999865
No 52
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=83.95 E-value=2.6 Score=30.62 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 176 EDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 176 ~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
++++..++.++...|-.|.+||..+ |.+...|+.+....++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4677788888888999999999999 8999999998877664
No 53
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=83.77 E-value=1.7 Score=45.85 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=42.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550 115 KVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163 (395)
Q Consensus 115 p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~ 163 (395)
.......||.||--++.++...|| +++.+|-+.||.|+-..+...|..
T Consensus 183 r~~~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~LP~rsLaSlvqyYy~ 230 (534)
T KOG1194|consen 183 RTEFPDEWTAEDIVLFEQAFQFFG-KDFHKIRQALPHRSLASLVQYYYS 230 (534)
T ss_pred cCCCcccchHHHHHHHHHHHHHhc-ccHHHHHHHccCccHHHHHHHHHH
Confidence 344567899999999999999999 789999999999999999887764
No 54
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=83.56 E-value=2 Score=44.44 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 172 RAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
.+|+.+|-++..+++...|..++.|+.+||.|...|||-+|.+--|+
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence 37999999999999999999999999999999999999999765444
No 55
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=82.47 E-value=9 Score=40.62 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=42.5
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 170 NKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 170 ~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
-...||.||--++-++...||..+.+|-+.||.|+-..+...|....|
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK 233 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK 233 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999988876654
No 56
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=81.99 E-value=2 Score=35.16 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=17.5
Q ss_pred CCCCCCCCCHHHHHHH--------HHHHHHhCCChHHHHHH
Q 047550 115 KVCSRGHWRPAEDSKL--------KELVALYGPQNWNLIAE 147 (395)
Q Consensus 115 p~~~kg~WT~EED~~L--------~~lV~~yG~~nW~kIAk 147 (395)
|....|-||+|+|+.| .+|+++|| +..|+.
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~ 80 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER 80 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 6677899999999998 45566676 555554
No 57
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=81.62 E-value=2 Score=43.44 Aligned_cols=47 Identities=26% Similarity=0.389 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHh----CC-----ChHHHHHHHcc----CCChhhhhhhhhhcc
Q 047550 119 RGHWRPAEDSKLKELVALY----GP-----QNWNLIAEKLE----GRSGKSCRLRWFNQL 165 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~y----G~-----~nW~kIAk~lp----gRt~~QCr~RW~~~L 165 (395)
...|+.+|-..|+++..+. .. .-|..||..+. -|++.||+.+|.++.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3689999999999988754 11 23999999772 399999999998754
No 58
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=80.10 E-value=3.7 Score=33.15 Aligned_cols=44 Identities=30% Similarity=0.584 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------hHHHHHHHcc---C--CChhhhhhhhhhc
Q 047550 121 HWRPAEDSKLKELVALY---GPQ---------NWNLIAEKLE---G--RSGKSCRLRWFNQ 164 (395)
Q Consensus 121 ~WT~EED~~L~~lV~~y---G~~---------nW~kIAk~lp---g--Rt~~QCr~RW~~~ 164 (395)
.||+++++.|++++.+. |.. .|..|+..|. | .+..||++||..+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 59999999999988655 212 3999999983 2 5678999998654
No 59
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=76.58 E-value=5.1 Score=28.51 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550 125 AEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163 (395)
Q Consensus 125 EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~ 163 (395)
+=|.+|+.+...-|...|.+||+.+ |=+...|..|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHH
Confidence 4588999999999988999999999 9999999999864
No 60
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=76.27 E-value=5.4 Score=28.37 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCC-chhhhhhcCCCCCHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGN-KWAMIARLFPGRTDNAVKNHWHVI 215 (395)
Q Consensus 177 EED~~Ll~lv~~~G~-kWs~IA~~l~gRT~~qcknRw~~i 215 (395)
+=|.+|+.++.+-|. .|.+||+.+ |=|...|..|++.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 458889999998884 599999999 99999999999765
No 61
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=75.14 E-value=6 Score=44.12 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHH
Q 047550 172 RAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHV 214 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ 214 (395)
..||+.|-.+.-+++..|...+-.|++.++++|-.||-..|+.
T Consensus 620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHH
Confidence 4699999999999999999999999999999999999766543
No 62
>smart00595 MADF subfamily of SANT domain.
Probab=74.89 E-value=4.8 Score=32.13 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=21.8
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 193 WAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 193 Ws~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
|..||..| |-|..+|+.+|+.+...
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR~~ 54 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLRDR 54 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 99999999 44999999999888744
No 63
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=74.34 E-value=4.1 Score=45.38 Aligned_cols=43 Identities=12% Similarity=0.463 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~ 163 (395)
..||+.|..+..+++-.|. +++..|++.++++|..||-+.|..
T Consensus 620 d~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred ccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHHH
Confidence 5899999999999999998 889999999999999999988753
No 64
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=71.32 E-value=36 Score=34.69 Aligned_cols=87 Identities=22% Similarity=0.281 Sum_probs=65.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---hHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHH-c----
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQ---NWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRV-Y---- 189 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~---nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~-~---- 189 (395)
.-..||.-|...|+++....... +-.+|++.++||+..+|++.-. .|+ +..+.+++++ |
T Consensus 20 gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~-~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 20 GPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQ-QLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHH-HHH------------HHHHHHHHHHhccccc
Confidence 34589999999999998876323 4678999999999999998543 332 3355566655 2
Q ss_pred -CC------------chhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 190 -GN------------KWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 190 -G~------------kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
|. -|..+|+.+.|.-...+-.-|-++|-
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 21 19999999999999988888877773
No 65
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=68.76 E-value=9.6 Score=33.95 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 047550 176 EDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 176 ~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~ 221 (395)
.+-|.+|+++.++-| ..|++||+.+ |-+...|+.|++.+....+-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 357889999999988 4699999999 99999999999888865543
No 66
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=67.68 E-value=6.6 Score=35.03 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccccc
Q 047550 124 PAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 169 (395)
Q Consensus 124 ~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l 169 (395)
.+-|.+|+.+..+.|...|.+||+.+ |-+...|+.|+.++.+..+
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~Gv 52 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGI 52 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 36789999999999988999999999 9999999999998765543
No 67
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=66.42 E-value=15 Score=26.29 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
+++..++.+.--.|..+.+||..+ |-+...|+.+....+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 456666777666667899999999 88999999988887754
No 68
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=65.79 E-value=10 Score=41.57 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCchhhhh----------hcCCCCCHHHHHHHHHHHHHHHHHhh
Q 047550 171 KRAFSEDEEERLMAAHRVYGNKWAMIA----------RLFPGRTDNAVKNHWHVIMARKYREQ 223 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~kWs~IA----------~~l~gRT~~qcknRw~~ilkkk~~~~ 223 (395)
+..||-+|++-...+++++|..+.+|- ....-+|-.|+|.+|++++++..+..
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 678999999999999999999999882 22344788999999999887755443
No 69
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=64.81 E-value=6.8 Score=35.39 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccccc
Q 047550 124 PAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 169 (395)
Q Consensus 124 ~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l 169 (395)
.+-|.+|+.+..+.|.-.|.+||+.+ |-+...|+.|+.++.+..+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 56788999999999988999999999 9999999999998765543
No 70
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=62.95 E-value=12 Score=33.84 Aligned_cols=44 Identities=5% Similarity=0.128 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCC-chhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 176 EDEEERLMAAHRVYGN-KWAMIARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 176 ~EED~~Ll~lv~~~G~-kWs~IA~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
.+-|.+|+.+.++-|. .|++||+.+ |-+...|+.|++.+.+..+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4568899999988884 699999999 9999999999988886655
No 71
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=61.62 E-value=14 Score=40.39 Aligned_cols=48 Identities=8% Similarity=0.342 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc-c---------CCChhhhhhhhhhccc
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKL-E---------GRSGKSCRLRWFNQLD 166 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l-p---------gRt~~QCr~RW~~~L~ 166 (395)
.|..||-.|++-...+++++| +++.+|-..+ . -+|-.|+|.+|++.+.
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVR 144 (782)
T ss_pred cccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Confidence 377999999999999999999 8899884333 2 2556788888876553
No 72
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=60.22 E-value=32 Score=35.04 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=43.8
Q ss_pred cCCCCHHHHHHHHHHHHHc-CCc---hhhhhhcCCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 047550 171 KRAFSEDEEERLMAAHRVY-GNK---WAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA 226 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~-G~k---Ws~IA~~l~gRT~~qcknRw~~ilkkk~~~~~~~ 226 (395)
-..||.-|...|+.+.+.. |.. -..|++.++||+..+|++.-+.+..+..++....
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rvareaiqk 80 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVAREAIQK 80 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999998765 433 5688899999999999998877776666555433
No 73
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=54.59 E-value=13 Score=34.02 Aligned_cols=41 Identities=29% Similarity=0.325 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHV 214 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ 214 (395)
.||+|+.++|.++.. -|..=++||..|+|.|.|.|.-+-+.
T Consensus 2 ~Wtde~~~~L~~lw~-~G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLWA-EGLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHHH-cCCCHHHHHHHhCCcchhhhhhhhhc
Confidence 599999999998884 48888999999988999998765543
No 74
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=54.41 E-value=4.9 Score=32.81 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=10.2
Q ss_pred cccccCCCCHHHHHHHHHH
Q 047550 167 PRINKRAFSEDEEERLMAA 185 (395)
Q Consensus 167 p~l~kg~WT~EED~~Ll~l 185 (395)
|.-..|-||+|+|+.|...
T Consensus 43 P~n~~GiWT~eDD~~L~~~ 61 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSG 61 (87)
T ss_dssp -TT-TT---HHHHHHHTS-
T ss_pred CCCCCCCcCHHHHHHHHcC
Confidence 4455788999999998543
No 75
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=53.56 E-value=27 Score=29.81 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+++..++.+.-..|-.+.+||+.+ |.+...|+.+....++
T Consensus 116 ~~~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~ 155 (161)
T TIGR02985 116 EQCRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALK 155 (161)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 456667777666788999999999 8999999999988654
No 76
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=51.80 E-value=23 Score=25.47 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhc
Q 047550 124 PAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ 164 (395)
Q Consensus 124 ~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~ 164 (395)
++++..++.+.-..| ..|.+||+.+ |.+...++.+..+.
T Consensus 12 ~~~~r~i~~l~~~~g-~s~~eIa~~l-~~s~~~v~~~l~ra 50 (54)
T PF08281_consen 12 PERQREIFLLRYFQG-MSYAEIAEIL-GISESTVKRRLRRA 50 (54)
T ss_dssp -HHHHHHHHHHHTS----HHHHHHHC-TS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 466677777777777 6799999999 89999999877654
No 77
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=47.78 E-value=38 Score=28.42 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHc----CC----chhhhhhcCCC-----CCHHHHHHHHHHHHHH
Q 047550 172 RAFSEDEEERLMAAHRVY----GN----KWAMIARLFPG-----RTDNAVKNHWHVIMAR 218 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~----G~----kWs~IA~~l~g-----RT~~qcknRw~~ilkk 218 (395)
..||+|+|-.||+++..| |. .|......+.+ =+..|+.++-+.+.++
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 469999999999998776 52 35444433322 3667777777655543
No 78
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=47.30 E-value=89 Score=32.66 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhhhh-hcCCCCCHHHHHHHHHH
Q 047550 172 RAFSEDEEERLMAAHRVYGNKWAMIA-RLFPGRTDNAVKNHWHV 214 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G~kWs~IA-~~l~gRT~~qcknRw~~ 214 (395)
..|+++|-...-+.++.||..+..|. ..++.|+--.|-..|+.
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHH
Confidence 47999999999999999999999995 57899999999887743
No 79
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=47.26 E-value=25 Score=27.12 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=21.4
Q ss_pred hhhhhhcCCC-CCHHHHHHHHHHHHHH
Q 047550 193 WAMIARLFPG-RTDNAVKNHWHVIMAR 218 (395)
Q Consensus 193 Ws~IA~~l~g-RT~~qcknRw~~ilkk 218 (395)
|..||..|+. -+..+|+.||..+...
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 9999999954 5788999999887643
No 80
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=46.11 E-value=31 Score=27.77 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=26.7
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCCC---C--HHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPGR---T--DNAVKNHWHVIMA 217 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~gR---T--~~qcknRw~~ilk 217 (395)
.|..+|.+.|+ +|..||+.|+-- + ..++|..|..+|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 67888888885 499999988331 2 3678888877663
No 81
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=45.52 E-value=29 Score=40.68 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc---c---------CCChhhhhhhhhhc
Q 047550 116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL---E---------GRSGKSCRLRWFNQ 164 (395)
Q Consensus 116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l---p---------gRt~~QCr~RW~~~ 164 (395)
..++..||.|||..|+-.+.+||-++|.+|-..+ | .||+..+..|-..+
T Consensus 923 ~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l 983 (1033)
T PLN03142 923 QNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL 983 (1033)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence 3445679999999999999999988999997655 1 47777777775443
No 82
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=44.20 E-value=46 Score=27.09 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCC--------chhhhhhcCCCC-----CHHHHHHHHHHHHH
Q 047550 180 ERLMAAHRVYGN--------KWAMIARLFPGR-----TDNAVKNHWHVIMA 217 (395)
Q Consensus 180 ~~Ll~lv~~~G~--------kWs~IA~~l~gR-----T~~qcknRw~~ilk 217 (395)
.+|..+|.+.|+ .|..|+..|.-. ...+++..|.++|.
T Consensus 35 ~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 35 YRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred HHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 367888888885 599999988332 35677888877763
No 83
>smart00595 MADF subfamily of SANT domain.
Probab=44.11 E-value=17 Score=28.95 Aligned_cols=23 Identities=48% Similarity=0.868 Sum_probs=20.2
Q ss_pred HHHHHHHccCCChhhhhhhhhhcc
Q 047550 142 WNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 142 W~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
|..||..| |-+...|+.+|.++-
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR 52 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLR 52 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHH
Confidence 99999999 559999999998753
No 84
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=42.45 E-value=57 Score=29.78 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
++..+++++..-.|-.+.+||+.+ |-+...|+.+|..+..+
T Consensus 138 ~~~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~~ 178 (185)
T PF07638_consen 138 PRQRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARAW 178 (185)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344555566555678899999999 99999999999887643
No 85
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=41.21 E-value=39 Score=27.71 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 177 EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~ 221 (395)
+.|.+|+.++.+.| ..+.+||+.+ |-+...|+.|.+.+.+..+-
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i 47 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVI 47 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 56888999998887 4699999999 99999999999998876553
No 86
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=41.05 E-value=39 Score=30.95 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550 121 HWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163 (395)
Q Consensus 121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~ 163 (395)
.||+|+.++|.+|..+- ..=.+||..|.+.|.+.+.-+-++
T Consensus 2 ~Wtde~~~~L~~lw~~G--~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLWAEG--LSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHHHcC--CCHHHHHHHhCCcchhhhhhhhhc
Confidence 59999999999999663 347999999977888877766543
No 87
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=40.45 E-value=52 Score=27.18 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 178 EEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 178 ED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
.+..++.+....|..+.+||+.+ |-+...|+++....+++
T Consensus 114 ~~~~ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 114 REREVLVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33444555545688899999999 77999999988876643
No 88
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=39.39 E-value=73 Score=34.24 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=47.9
Q ss_pred ChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc-cCCChhhhhhhhh
Q 047550 89 NNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL-EGRSGKSCRLRWF 162 (395)
Q Consensus 89 dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l-pgRt~~QCr~RW~ 162 (395)
-=..|...+|.-.+.-|+.... .|+.-|-.+..++.++|| ++++.|-..+ |-++-..+-+.|.
T Consensus 265 l~~Ais~LVPlGGPvLCRDemE----------EWSasEanLFEeALeKyG-KDFndIrqdfLPWKSl~sIveyYY 328 (693)
T KOG3554|consen 265 LSKAISYLVPLGGPVLCRDEME----------EWSASEANLFEEALEKYG-KDFNDIRQDFLPWKSLTSIVEYYY 328 (693)
T ss_pred HHHHHHHhhcCCCceeehhhhh----------hccchhhHHHHHHHHHhc-ccHHHHHHhhcchHHHHHHHHHHH
Confidence 3346667777555667887755 799999999999999999 7899987555 8777777766543
No 89
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=38.89 E-value=49 Score=27.10 Aligned_cols=43 Identities=19% Similarity=0.076 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550 125 AEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 168 (395)
Q Consensus 125 EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~ 168 (395)
+.|.+|+.+....+...+.+||+.+ |-+...|+.|...+.+..
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g 45 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEG 45 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 5788999999998877899999999 999999999988766544
No 90
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=38.19 E-value=42 Score=39.90 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHc-CCchhhhhh
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVY-GNKWAMIAR 198 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~-G~kWs~IA~ 198 (395)
--|..+||..|+-.|-+||-++|..|- .+....--=...+...+..+.|-...-..|+.++.++ +.+|....+
T Consensus 1134 ~~W~~e~Ds~LLiGI~khGygswe~Ir------~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~~~~~ 1207 (1373)
T KOG0384|consen 1134 CDWGSEDDSMLLIGIFKHGYGSWEAIR------LDPDLGLTDKIFLVETVPQAKHLQRRADYLLSLLRKHDKGNTPKKLK 1207 (1373)
T ss_pred cCCCchhhhhHhhhhhhcccccHHHhc------cCccccchhhhcccccCCchHHHHHHHHHHHHHHhhcccCCCchhhh
Confidence 469999999999999999999999993 2211111111122222445556666666777777666 455655443
No 91
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=37.98 E-value=20 Score=37.37 Aligned_cols=45 Identities=18% Similarity=0.396 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHH-----ccC-CChhhhhhhhhhcc
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEK-----LEG-RSGKSCRLRWFNQL 165 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~-----lpg-Rt~~QCr~RW~~~L 165 (395)
..||.+|-+-|.++...|. -.|--||.. ++. ||....++||..+.
T Consensus 131 n~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred ccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 5799999999999999998 569888877 555 99999999998654
No 92
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=36.30 E-value=91 Score=20.98 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550 174 FSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI 215 (395)
Q Consensus 174 WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i 215 (395)
++++ +..++.++...|..+..||+.+ |-+...|+.+....
T Consensus 11 l~~~-~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~ 50 (55)
T cd06171 11 LPER-EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRA 50 (55)
T ss_pred CCHH-HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 3444 4455555555677899999998 77887777665544
No 93
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=35.16 E-value=54 Score=28.44 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550 124 PAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 168 (395)
Q Consensus 124 ~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~ 168 (395)
.+-|.+++++.+..+...+.+||+.+ |-+...|+.|-.++.+..
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~G 50 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEG 50 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCC
Confidence 35688999999999988899999999 899999999988776544
No 94
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.72 E-value=2e+02 Score=24.61 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
++..||.|+-..++..+...| ..=..||+.+ |=+...++ +|.+.+
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g-~sv~evA~e~-gIs~~tl~-~W~r~y 53 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPG-MTVSLVARQH-GVAASQLF-LWRKQY 53 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHH-CcCHHHHH-HHHHHH
Confidence 457899999888888777777 4578999988 44555554 577654
No 95
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=34.48 E-value=47 Score=36.46 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=43.1
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 170 NKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 170 ~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
..+.|+.+|-++...+....|...+.|+..+++|+..|+|..|..--++
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r 456 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKR 456 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhc
Confidence 4468999999999999999999999999999999999999988554433
No 96
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=34.17 E-value=75 Score=27.73 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 179 D~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+..++.+....|-.+.+||+.+ |.+...|+.+....++
T Consensus 133 ~r~vl~l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~ 170 (182)
T PRK09652 133 LRTAITLREIEGLSYEEIAEIM-GCPIGTVRSRIFRARE 170 (182)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3445555556688899999999 8999999988876553
No 97
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=34.03 E-value=1.6e+02 Score=25.39 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHc------------CC-----------------c--hhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVY------------GN-----------------K--WAMIARLFPGRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~------------G~-----------------k--Ws~IA~~l~gRT~~qcknRw~~ilkkk~~ 221 (395)
.+|.+||..|-..|.++ |. . ....+...|..|.+.=|+||++.+...-.
T Consensus 1 kfTA~dDY~Lc~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fF~~~~~~~p~HT~~sWRDR~RKfv~~~gi 80 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQFYRDIYQKDPDTGSSLISDGDSKEFIPKRDMRSFFKDLARKNPRHTENSWRDRYRKFVSEYGI 80 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSB-TTSS-B----------------TTHHHHHHHHTTTS-HHHHHHHHHHTHHHH-H
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhCcccccccccCCCccccccchhhHHHHHHHHHcCCccchhHHHHHHHHHHHHcCh
Confidence 37999999999998764 11 0 45567778999999999999888866554
Q ss_pred hhhhhHHh
Q 047550 222 EQSSAYYR 229 (395)
Q Consensus 222 ~~~~~~~~ 229 (395)
.....+++
T Consensus 81 ~~Yi~Yye 88 (105)
T PF09197_consen 81 QSYIEYYE 88 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 98
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=33.58 E-value=74 Score=22.17 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHW 212 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw 212 (395)
-|...|.+++..+|++..+.|+.| |=+...+..+-
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~kl 39 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL-GISRRTLYRKL 39 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHHH
Confidence 367788999999999999999998 66666665543
No 99
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=32.19 E-value=81 Score=27.43 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 181 ~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
.++.+....|..+..||+.| |-+...|+++....++
T Consensus 132 ~i~~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~ 167 (179)
T PRK11924 132 EVFLLRYVEGLSYREIAEIL-GVPVGTVKSRLRRARQ 167 (179)
T ss_pred HHhhHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 34444445677899999999 8999999998877553
No 100
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=31.62 E-value=1.7e+02 Score=24.56 Aligned_cols=69 Identities=14% Similarity=0.273 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHh----CC---ChHHHHHHHccC-----CChhhhhhh-------hhhccccccccC---CCCH
Q 047550 119 RGHWRPAEDSKLKELVALY----GP---QNWNLIAEKLEG-----RSGKSCRLR-------WFNQLDPRINKR---AFSE 176 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~y----G~---~nW~kIAk~lpg-----Rt~~QCr~R-------W~~~L~p~l~kg---~WT~ 176 (395)
...||+|++-.|++.+..| |. .+|..+...+.+ =+..|..++ |.+.+.. .+.| .++.
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k-~~~g~~~~~~~ 82 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK-SKNGKDPSFSK 82 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCCC
Confidence 4579999999999999888 42 246555555432 244444443 3333322 2223 5777
Q ss_pred HHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRV 188 (395)
Q Consensus 177 EED~~Ll~lv~~ 188 (395)
.-|.++.++.++
T Consensus 83 ~hd~~~f~Lsk~ 94 (98)
T PF04504_consen 83 PHDRRLFELSKK 94 (98)
T ss_pred HhHHHHHHHHHH
Confidence 788888777654
No 101
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=31.61 E-value=65 Score=25.34 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHccCCCh---hhhhhhhhhccccccccCCCCHHHHHHH
Q 047550 127 DSKLKELVALYGPQNWNLIAEKLEGRSG---KSCRLRWFNQLDPRINKRAFSEDEEERL 182 (395)
Q Consensus 127 D~~L~~lV~~yG~~nW~kIAk~lpgRt~---~QCr~RW~~~L~p~l~kg~WT~EED~~L 182 (395)
+..|.++|+.|| |...++.+.-|+- -.++.- | .-+++.+|-.+.-+.|
T Consensus 12 e~il~~Lv~~yG---W~~L~~~i~i~CF~~~PsikSS----L-kFLRkTpWAR~KVE~l 62 (64)
T PF09905_consen 12 ETILTELVEHYG---WEELGERININCFKNNPSIKSS----L-KFLRKTPWAREKVENL 62 (64)
T ss_dssp HHHHHHHHHHT----HHHHHHHTTSSSTTSS--HHHH----H-HHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccCCCCCchHHH----H-HHHhcCHhHHHHHHHh
Confidence 578999999999 9999998854322 111110 0 0245677877655544
No 102
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=31.42 E-value=56 Score=26.71 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCchhhhhhcCCCCCHHHH
Q 047550 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAV 208 (395)
Q Consensus 179 D~~Ll~lv~~~G~kWs~IA~~l~gRT~~qc 208 (395)
|+.|..+....|..|..+|.+| |=|..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678899999999999999998 5555443
No 103
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=30.70 E-value=35 Score=37.40 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=42.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~ 163 (395)
.+....++|+.+|-++..+.....| .+...|+..+|+|...|++.++..
T Consensus 404 sk~~~~~~w~~se~e~fyka~~~~g-s~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 404 SKKLETDKWDASETELFYKALSERG-SDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred cCccccCcccchhhHHhhhHHhhhc-ccccccccccccccHHHHHHHHhh
Confidence 3445668999999999999999999 569999999999999999998754
No 104
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=30.46 E-value=93 Score=28.30 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIM 216 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~il 216 (395)
+++..++.+....|-...+||..+ |-+...|++|+...+
T Consensus 137 ~~~r~i~~l~~~~g~s~~EIA~~l-g~s~~tV~~rl~rar 175 (192)
T PRK09643 137 VEQRAALVAVDMQGYSVADAARML-GVAEGTVKSRCARGR 175 (192)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 334445555555677899999999 899999999986555
No 105
>PRK04217 hypothetical protein; Provisional
Probab=30.46 E-value=1.1e+02 Score=26.50 Aligned_cols=44 Identities=9% Similarity=-0.040 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 172 RAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
..-|++| ..++.++...|-...+||+.+ |-+...|+.++....+
T Consensus 41 ~~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArk 84 (110)
T PRK04217 41 IFMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARK 84 (110)
T ss_pred ccCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3456666 577777777888999999999 9999999999987553
No 106
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=29.48 E-value=71 Score=26.10 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCchhhhhhcCCCCCHHHH
Q 047550 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAV 208 (395)
Q Consensus 179 D~~Ll~lv~~~G~kWs~IA~~l~gRT~~qc 208 (395)
|.+|..+....|..|.++|..| |=+...+
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI 32 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEI 32 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHH
Confidence 6678888999999999999998 6555444
No 107
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=28.66 E-value=1.2e+02 Score=31.85 Aligned_cols=57 Identities=30% Similarity=0.399 Sum_probs=44.5
Q ss_pred cccCCCCHHHHHHHHHHHHHcCC----------------chhhhhhcC-----CCCCHHHHHHHHHHHHHHHHHhhhh
Q 047550 169 INKRAFSEDEEERLMAAHRVYGN----------------KWAMIARLF-----PGRTDNAVKNHWHVIMARKYREQSS 225 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G~----------------kWs~IA~~l-----~gRT~~qcknRw~~ilkkk~~~~~~ 225 (395)
.--|.|+++=|+...+++..|.. +=..||.++ ..||..||-.+-+.+-|+|.++...
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq~ 151 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQA 151 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34578999999999999998742 246788764 3488999999999888888877643
No 108
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=28.04 E-value=93 Score=24.66 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=25.9
Q ss_pred HHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHH
Q 047550 142 WNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLM 183 (395)
Q Consensus 142 W~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll 183 (395)
-..||..+.|+|+.++|..+ ++ ...+|+||++.|.
T Consensus 36 ~~~iA~~i~gks~eeir~~f------gi-~~d~t~eee~~i~ 70 (78)
T PF01466_consen 36 CKYIANMIKGKSPEEIRKYF------GI-ENDLTPEEEEEIR 70 (78)
T ss_dssp HHHHHHHHTTS-HHHHHHHH------T----TSSHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHc------CC-CCCCCHHHHHHHH
Confidence 67889999999999999977 23 3369998887754
No 109
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=27.80 E-value=1.1e+02 Score=26.93 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 178 EEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 178 ED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
++..++.+....|-...+||..+ |-|...|++|....+++
T Consensus 123 ~~r~i~~l~~~~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~ 162 (169)
T TIGR02954 123 KYQTAIILRYYHDLTIKEIAEVM-NKPEGTVKTYLHRALKK 162 (169)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34444555555677889999999 78999999988777643
No 110
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=27.16 E-value=1.3e+02 Score=26.10 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCC-chhhhhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 047550 176 EDEEERLMAAHRVYGN-KWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223 (395)
Q Consensus 176 ~EED~~Ll~lv~~~G~-kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~~ 223 (395)
.+-|.+|+++.++-|. .+..||+.+ |-+...|++|-+.+.+..+-+.
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCceee
Confidence 3568889999888874 599999999 8999999999988887765433
No 111
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=26.78 E-value=1.1e+02 Score=27.07 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 178 EEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 178 ED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
++..++.+..-.|..+.+||..+ |-+...|+++.....+
T Consensus 140 ~~r~il~l~~~~~~s~~eIA~~l-gis~~~v~~~l~Rar~ 178 (187)
T PRK09641 140 KYRTVIVLKYIEDLSLKEISEIL-DLPVGTVKTRIHRGRE 178 (187)
T ss_pred HHHHHhhhHHhhCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 34444555555677899999999 9999999998866654
No 112
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=26.58 E-value=1.5e+02 Score=20.58 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhh
Q 047550 126 EDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRW 161 (395)
Q Consensus 126 ED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW 161 (395)
|.+.|.++...++ +|..+.|+.| |=+....+.+.
T Consensus 6 E~~~i~~aL~~~~-gn~~~aA~~L-gisr~tL~~kl 39 (42)
T PF02954_consen 6 EKQLIRQALERCG-GNVSKAARLL-GISRRTLYRKL 39 (42)
T ss_dssp HHHHHHHHHHHTT-T-HHHHHHHH-TS-HHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHH-CCCHHHHHHHH
Confidence 6778888999998 7899999998 66666665554
No 113
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=24.79 E-value=1e+02 Score=27.34 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 183 MAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 183 l~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+.+....|....+||..+ |-|...|+++....++
T Consensus 147 ~~l~~~~~~s~~EIA~~l-gis~~tv~~~l~rar~ 180 (190)
T TIGR02939 147 ITLRELEGLSYEDIARIM-DCPVGTVRSRIFRARE 180 (190)
T ss_pred hhhhhhcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 333334566799999999 8889999998876664
No 114
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=24.45 E-value=1.4e+02 Score=27.04 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+++..++.+..-.|-...+||..| |-+...|++|....++
T Consensus 109 ~~~r~i~~l~~~~g~~~~EIA~~l-gis~~tV~~~l~Rar~ 148 (181)
T PRK09637 109 EKYAEALRLTELEGLSQKEIAEKL-GLSLSGAKSRVQRGRV 148 (181)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 356667777777888999999999 8999999999876653
No 115
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=24.22 E-value=1.5e+02 Score=25.57 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHhC------------CC------------------hHHHHHHHccCCChhhhhhhhhhcc
Q 047550 121 HWRPAEDSKLKELVALYG------------PQ------------------NWNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 121 ~WT~EED~~L~~lV~~yG------------~~------------------nW~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
++|++||-.|...|.++- .. =....+...|..|..+=|+||++.+
T Consensus 1 kfTA~dDY~Lc~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fF~~~~~~~p~HT~~sWRDR~RKfv 75 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQFYRDIYQKDPDTGSSLISDGDSKEFIPKRDMRSFFKDLARKNPRHTENSWRDRYRKFV 75 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSB-TTSS-B----------------TTHHHHHHHHTTTS-HHHHHHHHHHTH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhCcccccccccCCCccccccchhhHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 489999999999998771 00 0556667777888888888887765
No 116
>smart00351 PAX Paired Box domain.
Probab=24.11 E-value=3.6e+02 Score=23.24 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc--CCChhhhhhhhhh--ccccccc----cCCCCHHHHHHHHHHHH
Q 047550 116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE--GRSGKSCRLRWFN--QLDPRIN----KRAFSEDEEERLMAAHR 187 (395)
Q Consensus 116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp--gRt~~QCr~RW~~--~L~p~l~----kg~WT~EED~~Ll~lv~ 187 (395)
-....+++.++-++++.++. -| ..-.+||+.|. -.|...+..||.. .+.|... ...=+++++..|++++.
T Consensus 12 ~~~~~~~s~~~R~riv~~~~-~G-~s~~~iA~~~gvs~~tV~kwi~r~~~~G~~~pk~~gg~rp~~~~~~~~~~I~~~~~ 89 (125)
T smart00351 12 FVNGRPLPDEERQRIVELAQ-NG-VRPCDISRQLCVSHGCVSKILGRYYETGSIRPGAIGGSKPKVATPKVVKKIADYKQ 89 (125)
T ss_pred ecCCCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCcCCCCCCCCccCHHHHHHHHHHHH
Confidence 34456799999999998886 35 46899999992 2445555666653 3444222 12345666666777776
Q ss_pred HcCC
Q 047550 188 VYGN 191 (395)
Q Consensus 188 ~~G~ 191 (395)
+.+.
T Consensus 90 ~~p~ 93 (125)
T smart00351 90 ENPG 93 (125)
T ss_pred HCCC
Confidence 6553
No 117
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=23.87 E-value=74 Score=25.52 Aligned_cols=29 Identities=24% Similarity=0.593 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCchhhhhhcCCCCCHHHH
Q 047550 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAV 208 (395)
Q Consensus 179 D~~Ll~lv~~~G~kWs~IA~~l~gRT~~qc 208 (395)
|..|..+....|..|.++|..| |=+..++
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI 32 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDI 32 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 4567888889999999999998 5554433
No 118
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=23.72 E-value=1.3e+02 Score=26.68 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 181 ~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
.++.+..-.|....+||..+ |-+...|+++....++
T Consensus 143 ~v~~l~~~~g~s~~eIA~~l-gis~~~v~~~l~Rar~ 178 (187)
T TIGR02948 143 MVIVLKYMEDLSLKEISEIL-DLPVGTVKTRIHRGRE 178 (187)
T ss_pred HHhhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 33334334567789999999 8899999998866654
No 119
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=23.35 E-value=1.5e+02 Score=26.78 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+.+..++.+....|....+||..| |-+...|+.|....++
T Consensus 134 ~~~r~v~~l~~~~g~s~~EIA~~l-gis~~tvk~rl~Rar~ 173 (188)
T TIGR02943 134 EQTARVFMMREVLGFESDEICQEL-EISTSNCHVLLYRARL 173 (188)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 345567777777788899999999 9999999998876664
No 120
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=23.24 E-value=1.6e+02 Score=26.44 Aligned_cols=30 Identities=30% Similarity=0.216 Sum_probs=23.7
Q ss_pred HHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 187 RVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 187 ~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
...|....+||..+ |-+...|+.|....++
T Consensus 152 ~~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~ 181 (189)
T PRK09648 152 VVVGLSAEETAEAV-GSTPGAVRVAQHRALA 181 (189)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 33466799999999 8889999988876654
No 121
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=23.20 E-value=1.9e+02 Score=25.78 Aligned_cols=42 Identities=17% Similarity=0.049 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 178 EEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 178 ED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
+...++.+....|-...+||..| |-+...|+.|...-+++-+
T Consensus 131 ~~R~v~~L~~~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~~ 172 (178)
T PRK12529 131 RVKQAFLMATLDGMKQKDIAQAL-DIALPTVKKYIHQAYVTCL 172 (178)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 44555666666778899999999 9999999999987775544
No 122
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=23.04 E-value=1.7e+02 Score=25.22 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
++...++.+....|-.-.+||..| |-+...|+.|....+++
T Consensus 109 ~~~r~v~~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 149 (161)
T PRK09047 109 ARQREAFLLRYWEDMDVAETAAAM-GCSEGSVKTHCSRATHA 149 (161)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 345667777777788899999999 89999999998776643
No 123
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=22.89 E-value=1.6e+02 Score=26.68 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 182 LMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 182 Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
++.+....|-...+||..| |-+...|+.|....++
T Consensus 149 v~~l~~~eg~s~~EIA~~l-gis~~tVk~rl~ra~~ 183 (194)
T PRK12531 149 VLQAVYLEELPHQQVAEMF-DIPLGTVKSRLRLAVE 183 (194)
T ss_pred HHHHHHHcCCCHHHHHHHh-CcCHHHHHHHHHHHHH
Confidence 3444444566789999999 8999999988766654
No 124
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=22.38 E-value=1.7e+02 Score=25.72 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+++..++.+..-.|-.-.+||+.| |.+...|+.|....++
T Consensus 121 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~ 160 (173)
T PRK09645 121 PEHRAVLVRSYYRGWSTAQIAADL-GIPEGTVKSRLHYALR 160 (173)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 345556666666688889999999 9999999999877664
No 125
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=22.29 E-value=1.7e+02 Score=26.09 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 178 EEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 178 ED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
++..++.+....|....+||..| |-+...|+.+....+++
T Consensus 135 ~~r~v~~l~~~~g~s~~eIA~~l-~is~~tV~~~l~ra~~~ 174 (184)
T PRK12512 135 RQRDVVQSISVEGASIKETAAKL-SMSEGAVRVALHRGLAA 174 (184)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34455555555677899999999 89999999988776643
No 126
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=22.26 E-value=2.1e+02 Score=25.62 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 181 ~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
.++.+....|....+||..| |-+...|++|+...++
T Consensus 138 ~vl~l~~~~~~s~~eIA~~l-gis~~tV~~~l~Rar~ 173 (189)
T PRK12515 138 EIIDLVYYHEKSVEEVGEIV-GIPESTVKTRMFYARK 173 (189)
T ss_pred HHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 33333444567799999999 8899999999877653
No 127
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=22.21 E-value=1.7e+02 Score=25.27 Aligned_cols=40 Identities=13% Similarity=0.000 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+++..++.+....|-.-.+||+.+ |-+...|++|....++
T Consensus 109 ~~~r~v~~l~~~~g~s~~EIA~~l-gis~~tV~~~l~Rar~ 148 (160)
T PRK09642 109 ENYRDVVLAHYLEEKSYQEIALQE-KIEVKTVEMKLYRARK 148 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 355667777777788899999999 9999999998876654
No 128
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=21.86 E-value=1.5e+02 Score=26.56 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=22.8
Q ss_pred HcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 188 VYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 188 ~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
-.|-...+||..+ |-+...|++|....++
T Consensus 152 ~~g~s~~eIA~~l-gis~~tv~~~l~Rar~ 180 (193)
T PRK11923 152 FDGLSYEDIASVM-QCPVGTVRSRIFRARE 180 (193)
T ss_pred hcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3456688999999 8889999998877664
No 129
>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096)
Probab=21.85 E-value=73 Score=24.93 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=37.2
Q ss_pred hHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHH---HHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 141 NWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAH---RVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 141 nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv---~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
.|..|+..||.+...--+. .-++..+++++ ..-|..|..+...|+ ....|.+||+.-.+
T Consensus 5 ~W~~i~p~lp~~~~~~~~~----------------~~~~R~v~~ail~~lrtG~~Wr~LP~~fg--~~~tv~~~f~rW~~ 66 (75)
T PF13340_consen 5 EWALIEPLLPPRKPRGGRP----------------RIDLREVLNAILYVLRTGCPWRDLPEDFG--PWSTVYRRFRRWSR 66 (75)
T ss_pred HHHHHHhhCCCCCCCCCCC----------------ccchHHHHhcccccceecceecccchhcc--CcCcHHHHHHHHHH
Confidence 4999999997644321111 11344555554 456889999999996 44567777765554
No 130
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=21.70 E-value=1.8e+02 Score=25.66 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550 178 EEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 178 ED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk 219 (395)
++..++.+....|-...+||+.+ |-+...|+.|...-+++-
T Consensus 123 ~~r~v~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~~ 163 (172)
T PRK12523 123 KARAAFLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQC 163 (172)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 45556666666778899999999 999999999887766543
No 131
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=21.36 E-value=1.6e+02 Score=26.75 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=36.7
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCchhhhhhcCC----CCCHHHHHHHHHHH
Q 047550 170 NKRAFSEDEEERLMAAHRVYGNKWAMIARLFP----GRTDNAVKNHWHVI 215 (395)
Q Consensus 170 ~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~----gRT~~qcknRw~~i 215 (395)
....-|+.|..-|..++.+||.++...+.-.. -.|..||+.+....
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 34567888999999999999999999886432 38999998887654
No 132
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=20.83 E-value=1.8e+02 Score=26.30 Aligned_cols=40 Identities=5% Similarity=-0.051 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+++..++.+..-.|-...+||..| |-+...|+.|....++
T Consensus 137 ~~~R~v~~L~~~~g~s~~EIA~~l-gis~~tVk~~l~RAr~ 176 (189)
T PRK12530 137 AQQARVFMMREYLELSSEQICQEC-DISTSNLHVLLYRARL 176 (189)
T ss_pred HHHHHHHhHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 345556666666688899999999 9999999998766553
No 133
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=20.75 E-value=1.3e+02 Score=31.45 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHH-HHccCCChhhhhhhhhh
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIA-EKLEGRSGKSCRLRWFN 163 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIA-k~lpgRt~~QCr~RW~~ 163 (395)
-.|+.+|-...-+.++.|| +++-.|. ..++.|+...|-..|..
T Consensus 278 ~~wsEeEcr~FEegl~~yG-KDF~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYG-KDFHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred ccCCHHHHHHHHHHHHHhc-ccHHHHHhcccccchHHHHHHHHHH
Confidence 4799999999999999999 8899996 45688999999887743
No 134
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=20.71 E-value=2e+02 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 180 ERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 180 ~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
..++.+....|....+||+.+ |-+...|+.+-...++
T Consensus 112 r~ii~l~~~~~~s~~EIA~~l-~is~~tV~~~~~ra~~ 148 (154)
T PRK06759 112 KYIIFERFFVGKTMGEIALET-EMTYYQVRWIYRQALE 148 (154)
T ss_pred HHHHHHHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 334444444566789999999 8999999988766553
No 135
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=20.57 E-value=1.4e+02 Score=34.21 Aligned_cols=48 Identities=15% Similarity=0.303 Sum_probs=33.5
Q ss_pred ccCCCCHHHHHHHHHHHHHcCC----chhhhhh------------cCCCCCHHHHHHHHHHHHH
Q 047550 170 NKRAFSEDEEERLMAAHRVYGN----KWAMIAR------------LFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 170 ~kg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~l~gRT~~qcknRw~~ilk 217 (395)
++...|++||.-|+-.+.++|- .|..+-. ++..||...+..|+++++.
T Consensus 894 k~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frfdw~~~sRt~~el~Rr~ntli~ 957 (971)
T KOG0385|consen 894 KGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRFDWFIKSRTAMELQRRCNTLIT 957 (971)
T ss_pred cCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCcccccceeeehhhHHHHHhcCCeeEE
Confidence 4567999999999999999983 2555432 1345777777777766653
No 136
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.52 E-value=1.1e+02 Score=24.76 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=20.0
Q ss_pred HHHHHHHcCCchhhhhhcCCCCCHHHH
Q 047550 182 LMAAHRVYGNKWAMIARLFPGRTDNAV 208 (395)
Q Consensus 182 Ll~lv~~~G~kWs~IA~~l~gRT~~qc 208 (395)
|..+....|..|.++|..| |=+..++
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI 35 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEI 35 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 4446677899999999998 6666655
No 137
>PRK00118 putative DNA-binding protein; Validated
Probab=20.33 E-value=5.5e+02 Score=21.91 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 176 EDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 176 ~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
++.+..++.+....|-...+||+.+ |-+...|+.+.....+
T Consensus 19 ~ekqRevl~L~y~eg~S~~EIAe~l-GIS~~TV~r~L~RArk 59 (104)
T PRK00118 19 TEKQRNYMELYYLDDYSLGEIAEEF-NVSRQAVYDNIKRTEK 59 (104)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3456667777777788899999999 9999999887766543
Done!