Query 047550
Match_columns 395
No_of_seqs 299 out of 1915
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 21:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 7.6E-42 2.6E-46 305.9 11.5 153 66-219 6-158 (159)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 4.8E-39 1.7E-43 278.3 11.1 127 93-219 1-127 (128)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 5.5E-33 1.9E-37 232.3 11.1 104 117-220 2-105 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 9.3E-33 3.2E-37 232.3 12.0 104 119-222 1-104 (107)
5 3osg_A MYB21; transcription-DN 100.0 9.2E-32 3.1E-36 232.5 13.0 105 113-218 5-109 (126)
6 3zqc_A MYB3; transcription-DNA 100.0 6.6E-32 2.2E-36 234.8 7.4 105 119-223 2-106 (131)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 7.9E-29 2.7E-33 221.5 4.9 105 117-221 4-109 (159)
8 3zqc_A MYB3; transcription-DNA 99.9 3E-27 1E-31 205.4 1.1 125 71-200 6-130 (131)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 7.7E-25 2.6E-29 182.8 7.4 101 66-168 4-104 (105)
10 2k9n_A MYB24; R2R3 domain, DNA 99.9 6.5E-25 2.2E-29 184.4 6.6 98 70-168 4-101 (107)
11 1h8a_C AMV V-MYB, MYB transfor 99.9 1.3E-23 4.5E-28 181.4 8.7 102 65-168 26-127 (128)
12 3osg_A MYB21; transcription-DN 99.9 5.7E-24 2E-28 183.6 6.2 99 65-166 10-108 (126)
13 2dim_A Cell division cycle 5-l 99.8 4.4E-21 1.5E-25 149.6 5.4 66 114-179 4-69 (70)
14 1ign_A Protein (RAP1); RAP1,ye 99.8 7.4E-19 2.5E-23 165.9 9.7 105 115-219 4-200 (246)
15 2juh_A Telomere binding protei 99.7 8.9E-18 3E-22 144.4 6.4 84 112-195 10-103 (121)
16 2d9a_A B-MYB, MYB-related prot 99.7 5.3E-17 1.8E-21 122.7 6.9 57 114-170 3-59 (60)
17 2llk_A Cyclin-D-binding MYB-li 99.7 2.3E-17 7.8E-22 130.3 5.0 59 157-216 9-67 (73)
18 2roh_A RTBP1, telomere binding 99.7 1.4E-16 4.9E-21 137.1 8.2 80 113-192 25-114 (122)
19 1gvd_A MYB proto-oncogene prot 99.7 9.7E-17 3.3E-21 117.9 5.5 52 117-168 1-52 (52)
20 1ity_A TRF1; helix-turn-helix, 99.6 1.6E-16 5.4E-21 123.5 6.5 64 112-175 3-68 (69)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 1.2E-16 4.2E-21 117.3 5.3 52 117-168 1-52 (52)
22 2din_A Cell division cycle 5-l 99.6 2.5E-16 8.6E-21 121.3 6.3 59 164-223 2-60 (66)
23 2din_A Cell division cycle 5-l 99.6 3.8E-16 1.3E-20 120.2 4.8 60 112-173 2-61 (66)
24 2cu7_A KIAA1915 protein; nucle 99.6 5.8E-16 2E-20 121.4 5.7 58 165-222 3-60 (72)
25 3sjm_A Telomeric repeat-bindin 99.6 6.8E-16 2.3E-20 118.8 5.4 55 116-170 8-64 (64)
26 1x41_A Transcriptional adaptor 99.6 1.8E-15 6E-20 114.6 6.4 55 114-168 3-57 (60)
27 2llk_A Cyclin-D-binding MYB-li 99.6 1.7E-15 5.8E-20 119.5 6.4 60 104-165 8-67 (73)
28 2d9a_A B-MYB, MYB-related prot 99.6 1.4E-15 4.8E-20 114.9 4.5 53 166-218 3-56 (60)
29 1guu_A C-MYB, MYB proto-oncoge 99.6 2.7E-15 9.2E-20 110.1 5.8 49 169-217 1-50 (52)
30 1w0t_A Telomeric repeat bindin 99.6 3E-15 1E-19 110.5 5.5 49 118-166 1-51 (53)
31 1w0t_A Telomeric repeat bindin 99.6 3.4E-15 1.2E-19 110.2 5.4 49 170-218 1-52 (53)
32 1gvd_A MYB proto-oncogene prot 99.5 5.2E-15 1.8E-19 108.6 5.1 49 169-217 1-50 (52)
33 2elk_A SPCC24B10.08C protein; 99.5 8.7E-15 3E-19 110.2 6.4 52 114-165 4-56 (58)
34 2yum_A ZZZ3 protein, zinc fing 99.5 7.3E-15 2.5E-19 115.7 5.9 60 114-173 3-67 (75)
35 2cu7_A KIAA1915 protein; nucle 99.5 6.8E-15 2.3E-19 115.2 5.6 58 113-171 3-60 (72)
36 1ity_A TRF1; helix-turn-helix, 99.5 6.8E-15 2.3E-19 114.3 4.9 57 165-221 4-63 (69)
37 1x41_A Transcriptional adaptor 99.5 9.8E-15 3.3E-19 110.5 5.6 51 167-217 4-55 (60)
38 3sjm_A Telomeric repeat-bindin 99.5 1.4E-14 4.9E-19 111.4 5.2 52 168-219 8-62 (64)
39 2dim_A Cell division cycle 5-l 99.5 6.8E-15 2.3E-19 114.5 3.0 56 166-221 4-60 (70)
40 2elk_A SPCC24B10.08C protein; 99.5 5.4E-14 1.8E-18 105.9 5.8 49 168-216 6-56 (58)
41 2yum_A ZZZ3 protein, zinc fing 99.5 2.1E-14 7.2E-19 113.0 3.6 55 166-220 3-63 (75)
42 2ckx_A NGTRF1, telomere bindin 99.4 2.8E-13 9.5E-18 109.3 8.6 69 120-188 1-79 (83)
43 2ltp_A Nuclear receptor corepr 99.1 1.3E-14 4.5E-19 118.3 0.0 57 164-220 9-65 (89)
44 2aje_A Telomere repeat-binding 99.4 5.7E-13 1.9E-17 111.9 5.9 78 113-190 7-94 (105)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.3 8.2E-13 2.8E-17 104.2 5.8 51 167-217 14-68 (73)
46 2yus_A SWI/SNF-related matrix- 99.3 1E-12 3.5E-17 105.0 4.4 48 168-215 15-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.3 2.2E-12 7.6E-17 103.1 6.0 49 115-164 14-62 (79)
48 2ltp_A Nuclear receptor corepr 98.9 2.9E-13 9.9E-18 110.4 0.0 55 112-167 9-63 (89)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.4E-12 8.1E-17 101.5 4.1 53 114-166 13-68 (73)
50 1x58_A Hypothetical protein 49 99.3 6.8E-12 2.3E-16 95.6 6.0 50 169-218 6-58 (62)
51 2ckx_A NGTRF1, telomere bindin 99.3 7.2E-12 2.4E-16 101.1 6.4 49 172-220 1-54 (83)
52 1ign_A Protein (RAP1); RAP1,ye 99.2 5.6E-12 1.9E-16 119.1 6.2 97 70-166 11-198 (246)
53 2aje_A Telomere repeat-binding 99.2 1.9E-11 6.3E-16 102.7 6.7 52 167-218 9-65 (105)
54 2juh_A Telomere binding protei 99.2 1.6E-11 5.6E-16 105.4 5.4 55 165-219 11-70 (121)
55 2cjj_A Radialis; plant develop 99.2 3.7E-11 1.3E-15 98.9 7.0 50 170-219 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.1 5.6E-11 1.9E-15 102.2 6.6 53 167-219 27-84 (122)
57 2cjj_A Radialis; plant develop 99.0 1.4E-10 4.8E-15 95.4 5.1 49 117-165 6-57 (93)
58 1x58_A Hypothetical protein 49 98.9 8.7E-10 3E-14 84.0 4.7 50 116-166 5-57 (62)
59 3hm5_A DNA methyltransferase 1 98.9 2.7E-09 9.1E-14 87.7 7.5 65 155-223 18-87 (93)
60 2eqr_A N-COR1, N-COR, nuclear 98.9 2.4E-09 8.3E-14 81.2 5.6 47 169-215 10-56 (61)
61 2eqr_A N-COR1, N-COR, nuclear 98.8 8.3E-09 2.8E-13 78.2 6.3 49 116-165 9-57 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.8 7.1E-09 2.4E-13 81.4 5.7 50 168-218 5-58 (72)
63 2iw5_B Protein corest, REST co 98.7 9E-09 3.1E-13 96.6 6.2 86 129-217 94-179 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.7 2.5E-08 8.6E-13 78.3 5.4 50 116-166 5-57 (72)
65 2xag_B REST corepressor 1; ami 98.5 4.3E-08 1.5E-12 101.1 4.1 44 172-215 381-424 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.5 9.4E-08 3.2E-12 75.2 4.1 46 171-216 8-57 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.4 4E-07 1.4E-11 71.6 7.0 50 118-167 7-59 (73)
68 2iw5_B Protein corest, REST co 98.4 3.6E-07 1.2E-11 85.8 6.9 49 117-166 131-179 (235)
69 1fex_A TRF2-interacting telome 98.4 2.8E-07 9.7E-12 69.5 4.6 48 119-166 2-58 (59)
70 1fex_A TRF2-interacting telome 98.3 5.2E-07 1.8E-11 68.1 4.4 46 171-216 2-57 (59)
71 1ofc_X ISWI protein; nuclear p 98.2 4.9E-06 1.7E-10 81.5 10.4 104 120-223 111-280 (304)
72 3hm5_A DNA methyltransferase 1 98.2 9.1E-07 3.1E-11 72.6 3.5 59 104-167 19-82 (93)
73 1ug2_A 2610100B20RIK gene prod 98.2 2.3E-06 7.7E-11 69.6 5.5 47 173-219 35-84 (95)
74 2lr8_A CAsp8-associated protei 97.2 9E-07 3.1E-11 68.3 0.0 45 173-218 16-63 (70)
75 4eef_G F-HB80.4, designed hema 98.0 1.9E-06 6.5E-11 67.6 1.6 43 171-213 20-66 (74)
76 4iej_A DNA methyltransferase 1 97.9 2.1E-05 7.1E-10 64.5 7.5 52 172-223 31-87 (93)
77 2yqk_A Arginine-glutamic acid 97.9 2.3E-05 7.8E-10 59.6 6.2 47 167-213 5-52 (63)
78 2yqk_A Arginine-glutamic acid 97.8 3E-05 1E-09 59.0 5.6 49 114-163 4-53 (63)
79 4eef_G F-HB80.4, designed hema 97.7 5.5E-06 1.9E-10 65.0 -0.3 45 118-162 19-66 (74)
80 2xag_B REST corepressor 1; ami 97.4 0.00015 5E-09 75.0 6.6 47 118-165 379-425 (482)
81 4b4c_A Chromodomain-helicase-D 97.4 0.0012 4.1E-08 60.4 11.8 101 118-218 6-196 (211)
82 2crg_A Metastasis associated p 97.4 0.00024 8.2E-09 55.1 5.7 43 171-213 8-51 (70)
83 4a69_C Nuclear receptor corepr 97.4 0.00024 8.3E-09 58.1 5.8 43 171-213 43-85 (94)
84 4a69_C Nuclear receptor corepr 97.3 0.00023 8E-09 58.2 5.0 44 119-163 43-86 (94)
85 2crg_A Metastasis associated p 97.3 0.00027 9.1E-09 54.8 5.0 45 118-163 7-52 (70)
86 2y9y_A Imitation switch protei 97.2 0.0011 3.8E-08 66.4 9.9 103 120-223 124-296 (374)
87 2ebi_A DNA binding protein GT- 97.0 0.00041 1.4E-08 55.3 3.7 48 171-218 4-65 (86)
88 1ug2_A 2610100B20RIK gene prod 97.0 0.00058 2E-08 55.5 4.4 46 120-165 34-81 (95)
89 2ebi_A DNA binding protein GT- 97.0 0.00059 2E-08 54.4 4.1 49 118-166 3-64 (86)
90 2lr8_A CAsp8-associated protei 95.8 0.0002 6.8E-09 55.3 0.0 45 121-166 16-62 (70)
91 4iej_A DNA methyltransferase 1 95.9 0.0063 2.1E-07 49.8 4.1 46 120-166 31-81 (93)
92 1irz_A ARR10-B; helix-turn-hel 93.6 0.17 5.7E-06 38.6 6.3 48 169-216 5-57 (64)
93 1irz_A ARR10-B; helix-turn-hel 93.5 0.18 6.2E-06 38.4 6.3 49 116-164 4-56 (64)
94 1ofc_X ISWI protein; nuclear p 92.9 0.16 5.4E-06 49.7 6.6 48 171-218 110-158 (304)
95 4b4c_A Chromodomain-helicase-D 90.1 0.34 1.2E-05 43.9 5.3 50 169-218 5-59 (211)
96 2xb0_X Chromo domain-containin 86.0 0.51 1.8E-05 45.3 3.8 28 120-147 169-196 (270)
97 2xb0_X Chromo domain-containin 76.0 14 0.00049 35.2 9.9 51 171-221 3-58 (270)
98 2y9y_A Imitation switch protei 75.9 2.5 8.5E-05 42.4 4.7 44 118-161 227-285 (374)
99 2o8x_A Probable RNA polymerase 58.6 13 0.00046 26.4 4.6 40 177-217 18-57 (70)
100 2li6_A SWI/SNF chromatin-remod 56.8 8 0.00027 32.0 3.4 36 181-216 53-96 (116)
101 2rq5_A Protein jumonji; develo 54.9 18 0.00063 30.3 5.4 57 128-187 45-113 (121)
102 1ku3_A Sigma factor SIGA; heli 53.5 18 0.00062 26.5 4.6 41 177-218 13-57 (73)
103 2lm1_A Lysine-specific demethy 51.1 19 0.00066 29.0 4.8 37 181-217 48-96 (107)
104 3cz6_A DNA-binding protein RAP 50.6 18 0.00062 32.2 4.8 40 104-146 98-146 (168)
105 1kkx_A Transcription regulator 50.4 11 0.00037 31.8 3.2 37 181-217 52-96 (123)
106 2jrz_A Histone demethylase jar 47.9 16 0.00056 30.2 3.9 37 181-217 44-92 (117)
107 2eqy_A RBP2 like, jumonji, at 45.9 22 0.00074 29.7 4.4 36 181-216 46-93 (122)
108 2p7v_B Sigma-70, RNA polymeras 44.6 20 0.00068 25.9 3.5 39 178-217 9-51 (68)
109 2cxy_A BAF250B subunit, HBAF25 43.6 22 0.00076 29.7 4.1 36 181-216 55-102 (125)
110 2p1m_A SKP1-like protein 1A; F 43.6 20 0.00069 31.0 4.0 36 142-184 118-153 (160)
111 1k78_A Paired box protein PAX5 43.4 1.3E+02 0.0046 24.5 9.9 67 120-190 31-107 (149)
112 3cz6_A DNA-binding protein RAP 42.1 84 0.0029 27.9 7.7 58 126-183 63-126 (168)
113 2rq5_A Protein jumonji; develo 41.9 56 0.0019 27.3 6.3 37 181-217 46-95 (121)
114 2li6_A SWI/SNF chromatin-remod 40.8 21 0.00073 29.4 3.5 39 129-167 53-98 (116)
115 3hug_A RNA polymerase sigma fa 39.6 37 0.0013 26.0 4.6 41 177-218 40-80 (92)
116 3i4p_A Transcriptional regulat 38.4 21 0.00071 30.5 3.2 43 125-168 3-45 (162)
117 3v7d_A Suppressor of kinetocho 38.0 26 0.00088 30.7 3.8 35 142-183 126-160 (169)
118 3i4p_A Transcriptional regulat 36.0 34 0.0012 29.1 4.2 43 177-220 3-46 (162)
119 2kk0_A AT-rich interactive dom 35.5 34 0.0011 29.4 4.0 36 181-216 68-116 (145)
120 2jxj_A Histone demethylase jar 34.5 16 0.00054 28.9 1.7 36 181-216 40-87 (96)
121 1c20_A DEAD ringer protein; DN 33.6 41 0.0014 28.1 4.2 38 180-217 55-105 (128)
122 1x3u_A Transcriptional regulat 32.8 76 0.0026 22.9 5.2 41 174-217 17-57 (79)
123 1u78_A TC3 transposase, transp 32.2 1.9E+02 0.0064 22.9 11.3 88 120-211 5-99 (141)
124 2ast_A S-phase kinase-associat 31.8 32 0.0011 29.5 3.3 56 122-184 94-154 (159)
125 2jrz_A Histone demethylase jar 30.9 45 0.0015 27.4 4.0 40 128-167 43-93 (117)
126 2k27_A Paired box protein PAX- 30.8 2.3E+02 0.0077 23.4 10.3 66 120-189 24-99 (159)
127 1tty_A Sigma-A, RNA polymerase 30.7 64 0.0022 24.4 4.6 39 178-217 22-64 (87)
128 2q1z_A RPOE, ECF SIGE; ECF sig 30.6 47 0.0016 27.8 4.2 33 185-218 146-178 (184)
129 1ig6_A MRF-2, modulator recogn 29.9 22 0.00074 28.8 1.8 36 181-216 37-85 (107)
130 1or7_A Sigma-24, RNA polymeras 29.2 69 0.0024 26.9 5.0 30 188-218 154-183 (194)
131 1fse_A GERE; helix-turn-helix 29.1 81 0.0028 22.3 4.8 43 172-217 10-52 (74)
132 3c57_A Two component transcrip 28.9 85 0.0029 24.2 5.1 42 173-217 27-68 (95)
133 2dbb_A Putative HTH-type trans 28.3 96 0.0033 25.6 5.7 45 177-222 9-54 (151)
134 1je8_A Nitrate/nitrite respons 27.6 84 0.0029 23.5 4.8 42 173-217 21-62 (82)
135 2jxj_A Histone demethylase jar 27.5 43 0.0015 26.3 3.2 39 129-167 40-89 (96)
136 1ntc_A Protein (nitrogen regul 27.3 89 0.003 24.1 5.0 34 177-211 51-84 (91)
137 3e7l_A Transcriptional regulat 27.1 78 0.0027 22.7 4.3 33 177-210 19-51 (63)
138 3ulq_B Transcriptional regulat 27.1 1.2E+02 0.004 23.4 5.6 45 171-218 27-71 (90)
139 2e1c_A Putative HTH-type trans 26.7 60 0.0021 28.0 4.2 42 125-167 27-68 (171)
140 2e1c_A Putative HTH-type trans 26.3 83 0.0028 27.1 5.1 43 177-220 27-70 (171)
141 1ig6_A MRF-2, modulator recogn 25.9 54 0.0019 26.3 3.5 40 128-167 36-87 (107)
142 1kkx_A Transcription regulator 25.7 31 0.0011 28.9 2.1 39 129-167 52-97 (123)
143 2cxy_A BAF250B subunit, HBAF25 25.0 58 0.002 27.0 3.7 40 128-167 54-104 (125)
144 2jpc_A SSRB; DNA binding prote 25.0 1.1E+02 0.0037 21.0 4.6 37 179-217 3-39 (61)
145 2lm1_A Lysine-specific demethy 24.8 56 0.0019 26.2 3.4 40 128-167 47-97 (107)
146 2eqy_A RBP2 like, jumonji, at 24.6 60 0.0021 26.9 3.6 40 128-167 45-95 (122)
147 2cyy_A Putative HTH-type trans 24.3 1.1E+02 0.0037 25.4 5.3 43 177-220 7-50 (151)
148 1xsv_A Hypothetical UPF0122 pr 24.2 1.1E+02 0.0037 24.6 5.1 40 178-218 29-68 (113)
149 2jvw_A Uncharacterized protein 23.4 70 0.0024 25.5 3.5 49 127-183 18-69 (88)
150 3mzy_A RNA polymerase sigma-H 22.4 1E+02 0.0034 24.8 4.6 36 181-218 116-151 (164)
151 1rp3_A RNA polymerase sigma fa 22.0 1.1E+02 0.0037 26.4 5.0 41 177-218 190-230 (239)
152 2rnj_A Response regulator prot 21.9 1E+02 0.0035 23.3 4.3 42 173-217 29-70 (91)
153 1c20_A DEAD ringer protein; DN 21.6 79 0.0027 26.3 3.8 40 128-167 55-106 (128)
154 2kk0_A AT-rich interactive dom 21.0 2.1E+02 0.0072 24.3 6.5 51 128-178 67-131 (145)
155 2dbb_A Putative HTH-type trans 20.8 84 0.0029 25.9 3.9 40 125-165 9-48 (151)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=7.6e-42 Score=305.89 Aligned_cols=153 Identities=36% Similarity=0.717 Sum_probs=113.1
Q ss_pred CCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHH
Q 047550 66 QNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLI 145 (395)
Q Consensus 66 k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kI 145 (395)
++-| +++||+.|..+|..++..+|..||..|++|++.||+.||.++++|.+++|+||+|||++|+++|.+||..+|..|
T Consensus 6 k~~W-t~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~I 84 (159)
T 1h89_C 6 KTRW-TREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVI 84 (159)
T ss_dssp --------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHH
Confidence 4444 499999999999999999999999999999999999999999999999999999999999999999998789999
Q ss_pred HHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550 146 AEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 146 Ak~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk 219 (395)
|+.|||||+.||++||.++|+|.+++++||+|||.+|++++.+||++|+.||+.|||||+++|++||+.+++++
T Consensus 85 a~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 85 AKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=4.8e-39 Score=278.33 Aligned_cols=127 Identities=42% Similarity=0.829 Sum_probs=103.3
Q ss_pred HHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccC
Q 047550 93 VDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKR 172 (395)
Q Consensus 93 IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg 172 (395)
||+.|+||++.||+.||.++|+|.+++|+||+|||++|+++|.+||.++|.+||+.||||++.||++||.++|+|.++++
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 78999999999999999999999999999999999999999999998789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk 219 (395)
+||+|||++|+++|.+||++|+.||+.|||||+++|++||+.+++++
T Consensus 81 ~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998765
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=5.5e-33 Score=232.26 Aligned_cols=104 Identities=48% Similarity=0.997 Sum_probs=99.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhh
Q 047550 117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMI 196 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~I 196 (395)
+++|+||+|||++|+++|.+||.++|..||+.||||++.||++||.++|+|.+++++||+|||++|+++|.+||.+|+.|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 81 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 81 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 57899999999999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 197 ARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 197 A~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
|+.|||||+++|++||+.++++++
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHcCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999997753
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=9.3e-33 Score=232.30 Aligned_cols=104 Identities=30% Similarity=0.646 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhh
Q 047550 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIAR 198 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~ 198 (395)
||+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHh
Q 047550 199 LFPGRTDNAVKNHWHVIMARKYRE 222 (395)
Q Consensus 199 ~l~gRT~~qcknRw~~ilkkk~~~ 222 (395)
.|||||+++|++||+.++++..+.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 999999999999999999876544
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=9.2e-32 Score=232.53 Aligned_cols=105 Identities=37% Similarity=0.751 Sum_probs=100.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCc
Q 047550 113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNK 192 (395)
Q Consensus 113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~k 192 (395)
..+..++|+||+|||++|+++|..||. +|..||+.|+||++.||++||.++|+|.+++++||+|||++|+++|.+||.+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 356778999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 193 WAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 193 Ws~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
|++||+.|+|||+++|++||+.++++
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998865
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=6.6e-32 Score=234.76 Aligned_cols=105 Identities=43% Similarity=0.830 Sum_probs=101.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhh
Q 047550 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIAR 198 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~ 198 (395)
||+||+|||++|+++|..||.++|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 79999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhh
Q 047550 199 LFPGRTDNAVKNHWHVIMARKYREQ 223 (395)
Q Consensus 199 ~l~gRT~~qcknRw~~ilkkk~~~~ 223 (395)
.|+|||+++|++||+.++++++...
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999998766443
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=7.9e-29 Score=221.46 Aligned_cols=105 Identities=30% Similarity=0.706 Sum_probs=62.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCC-chhh
Q 047550 117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGN-KWAM 195 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~-kWs~ 195 (395)
+.+++||+|||++|+++|.+||..+|..||+.||||++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~ 83 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV 83 (159)
T ss_dssp ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence 578999999999999999999988999999999999999999999999999999999999999999999999996 6999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHH
Q 047550 196 IARLFPGRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 196 IA~~l~gRT~~qcknRw~~ilkkk~~ 221 (395)
||..|+|||+.||++||..+|.+.++
T Consensus 84 Ia~~l~~Rt~~qcr~Rw~~~l~p~~~ 109 (159)
T 1h89_C 84 IAKHLKGRIGKQCRERWHNHLNPEVK 109 (159)
T ss_dssp HHHTSTTCCHHHHHHHHHHTTCTTSC
T ss_pred HHHHcCCCCHHHHHHHHHHHhCcccc
Confidence 99999999999999999998865443
No 8
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.93 E-value=3e-27 Score=205.39 Aligned_cols=125 Identities=16% Similarity=0.297 Sum_probs=103.9
Q ss_pred CCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc
Q 047550 71 CDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE 150 (395)
Q Consensus 71 ~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp 150 (395)
+++||+.|..+|..++..+|..||..|++|++.||+.||.++|+|.+++|+||+|||++|+++|.+|| .+|..||+.||
T Consensus 6 t~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~ 84 (131)
T 3zqc_A 6 TEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP 84 (131)
T ss_dssp CHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 66999999999
Q ss_pred CCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcC
Q 047550 151 GRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLF 200 (395)
Q Consensus 151 gRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l 200 (395)
|||+.||++||.++|++.+..++|+.+- +......+.+|+.|++.|
T Consensus 85 gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 85 GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKAADVPKKL 130 (131)
T ss_dssp TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC------------
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhhhhcchhc
Confidence 9999999999999999999999988762 111122245688888765
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.91 E-value=7.7e-25 Score=182.82 Aligned_cols=101 Identities=15% Similarity=0.274 Sum_probs=93.6
Q ss_pred CCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHH
Q 047550 66 QNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLI 145 (395)
Q Consensus 66 k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kI 145 (395)
++-| +++||..|..+|..+|..+|..||..|++|+..||+.||.++++|.+++|+||+|||++|+++|.+|| .+|..|
T Consensus 4 k~~W-T~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~I 81 (105)
T 1gv2_A 4 KGPW-TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEI 81 (105)
T ss_dssp CSCC-CHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHH
Confidence 3444 48999999999999999999999999999999999999999999999999999999999999999999 579999
Q ss_pred HHHccCCChhhhhhhhhhccccc
Q 047550 146 AEKLEGRSGKSCRLRWFNQLDPR 168 (395)
Q Consensus 146 Ak~lpgRt~~QCr~RW~~~L~p~ 168 (395)
|+.|||||+.||++||..+++..
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999988653
No 10
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.91 E-value=6.5e-25 Score=184.40 Aligned_cols=98 Identities=20% Similarity=0.344 Sum_probs=93.0
Q ss_pred cCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc
Q 047550 70 YCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL 149 (395)
Q Consensus 70 ~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l 149 (395)
++++||+.|..+|..+|..+|..||..|++|++.||+.||.++|+|.+++|+||+|||++|+++|.+|| .+|..||+.|
T Consensus 4 Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l 82 (107)
T 2k9n_A 4 FTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFL 82 (107)
T ss_dssp SCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHC
Confidence 348899999999999999999999999999999999999999999999999999999999999999999 5799999999
Q ss_pred cCCChhhhhhhhhhccccc
Q 047550 150 EGRSGKSCRLRWFNQLDPR 168 (395)
Q Consensus 150 pgRt~~QCr~RW~~~L~p~ 168 (395)
||||+.||++||..+++..
T Consensus 83 ~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 83 KNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp SSSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhH
Confidence 9999999999999887653
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.89 E-value=1.3e-23 Score=181.45 Aligned_cols=102 Identities=14% Similarity=0.273 Sum_probs=94.9
Q ss_pred cCCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHH
Q 047550 65 SQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNL 144 (395)
Q Consensus 65 ~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~k 144 (395)
.++-| +++||+.|.++|..+|..+|.+||..|+||+..||+.||.++++|.+++|+||+|||++|+++|.+|| .+|..
T Consensus 26 ~k~~W-t~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G-~~W~~ 103 (128)
T 1h8a_C 26 NKGPW-TKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAE 103 (128)
T ss_dssp CCSCC-CHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC-SCHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC-cCHHH
Confidence 34444 48999999999999999999999999999999999999999999999999999999999999999999 57999
Q ss_pred HHHHccCCChhhhhhhhhhccccc
Q 047550 145 IAEKLEGRSGKSCRLRWFNQLDPR 168 (395)
Q Consensus 145 IAk~lpgRt~~QCr~RW~~~L~p~ 168 (395)
||+.|||||+.+|++||..+++..
T Consensus 104 Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 104 IAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999988653
No 12
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.89 E-value=5.7e-24 Score=183.65 Aligned_cols=99 Identities=18% Similarity=0.301 Sum_probs=92.7
Q ss_pred cCCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHH
Q 047550 65 SQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNL 144 (395)
Q Consensus 65 ~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~k 144 (395)
.++-| +++||+.|..+|..+|. +|.+||+.|++|+..||+.||.++|+|.+++|+||+|||++|+++|.+|| .+|.+
T Consensus 10 kk~~W-T~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~ 86 (126)
T 3osg_A 10 KKQKF-TPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG-RQWAI 86 (126)
T ss_dssp SSCCC-CHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC-cCHHH
Confidence 34444 48999999999999997 99999999999999999999999999999999999999999999999999 67999
Q ss_pred HHHHccCCChhhhhhhhhhccc
Q 047550 145 IAEKLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 145 IAk~lpgRt~~QCr~RW~~~L~ 166 (395)
||+.|||||+.+|++||..+++
T Consensus 87 Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 87 IAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.4e-21 Score=149.64 Aligned_cols=66 Identities=38% Similarity=0.714 Sum_probs=63.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHH
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEE 179 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED 179 (395)
.+.+++|+||+|||++|+++|.+||..+|..||..|+|||+.||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 567899999999999999999999988999999999999999999999999999999999999998
No 14
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.77 E-value=7.4e-19 Score=165.86 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=92.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC-----hHHHHHHHccCCChhhhhhhhhhccccccc-------------------
Q 047550 115 KVCSRGHWRPAEDSKLKELVALYGPQ-----NWNLIAEKLEGRSGKSCRLRWFNQLDPRIN------------------- 170 (395)
Q Consensus 115 p~~~kg~WT~EED~~L~~lV~~yG~~-----nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~------------------- 170 (395)
+..++++||+|||++|+++|.++|.. .|.+||+.|||||+.|||+||+.+|.+.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 45678999999999999999999854 399999999999999999999999999987
Q ss_pred ----------cCCCCHHHHHHHHHHHHH-c--------------------------------CC----------------
Q 047550 171 ----------KRAFSEDEEERLMAAHRV-Y--------------------------------GN---------------- 191 (395)
Q Consensus 171 ----------kg~WT~EED~~Ll~lv~~-~--------------------------------G~---------------- 191 (395)
+..||.|||..|+..+++ + |.
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 789999999999999887 1 11
Q ss_pred ---------chhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550 192 ---------KWAMIARLFPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 192 ---------kWs~IA~~l~gRT~~qcknRw~~ilkkk 219 (395)
.|.+||+.+|+||.++.|+||+.+++..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999999765
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.70 E-value=8.9e-18 Score=144.39 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc----cCCChhhhhhhhhhccc-----cccccC-CCCHHHHHH
Q 047550 112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL----EGRSGKSCRLRWFNQLD-----PRINKR-AFSEDEEER 181 (395)
Q Consensus 112 ~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l----pgRt~~QCr~RW~~~L~-----p~l~kg-~WT~EED~~ 181 (395)
.+.+..++++||+|||+.|+++|++||.++|..|++.+ +|||+.+|++||+++++ |.++++ +|++||+.+
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 35677899999999999999999999988999999995 89999999999999998 899999 999999999
Q ss_pred HHHHHHHcCCchhh
Q 047550 182 LMAAHRVYGNKWAM 195 (395)
Q Consensus 182 Ll~lv~~~G~kWs~ 195 (395)
|++++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=5.3e-17 Score=122.74 Aligned_cols=57 Identities=28% Similarity=0.693 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccc
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 170 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~ 170 (395)
+|.+++++||+|||++|+++|.+||..+|.+||+.|+|||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 578899999999999999999999987899999999999999999999999999875
No 17
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=130.25 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=47.4
Q ss_pred hhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHH
Q 047550 157 CRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIM 216 (395)
Q Consensus 157 Cr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~il 216 (395)
..-||.++|+|.+++++||+|||++|+++|.+||++|++||+.| |||++|||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 999999999998654
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.66 E-value=1.4e-16 Score=137.08 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc----cCCChhhhhhhhhhcc-----ccccccCCCCHHH-HHHH
Q 047550 113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL----EGRSGKSCRLRWFNQL-----DPRINKRAFSEDE-EERL 182 (395)
Q Consensus 113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l----pgRt~~QCr~RW~~~L-----~p~l~kg~WT~EE-D~~L 182 (395)
.....++++||+|||+.|+++|++||.++|..|++.+ ++||+.+|++||++++ +|.++++.|+++| +.+|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 3445678999999999999999999988999999975 8999999999999999 7999999999999 8999
Q ss_pred HHHHHHcCCc
Q 047550 183 MAAHRVYGNK 192 (395)
Q Consensus 183 l~lv~~~G~k 192 (395)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 19
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.65 E-value=9.7e-17 Score=117.92 Aligned_cols=52 Identities=48% Similarity=1.042 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550 117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 168 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~ 168 (395)
+++|+||+|||++|+++|.+||.++|.+||+.|+|||+.||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999878999999999999999999999999984
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=1.6e-16 Score=123.49 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc--CCChhhhhhhhhhccccccccCCCC
Q 047550 112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE--GRSGKSCRLRWFNQLDPRINKRAFS 175 (395)
Q Consensus 112 ~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp--gRt~~QCr~RW~~~L~p~l~kg~WT 175 (395)
...+..++++||+|||++|+++|.+||.++|..||..|+ |||+.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 456778899999999999999999999889999999999 9999999999999999999988764
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=1.2e-16 Score=117.28 Aligned_cols=52 Identities=37% Similarity=0.770 Sum_probs=48.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550 117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 168 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~ 168 (395)
+++|+||+|||++|+++|.+||.++|..||+.|+|||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4689999999999999999999778999999999999999999999999874
No 22
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.5e-16 Score=121.26 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=55.9
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 047550 164 QLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223 (395)
Q Consensus 164 ~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~~ 223 (395)
+|+|.+++++||+|||++|+++|++||.+|.+||+ ++|||+.|||+||+.++++.++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 68999999999999999999999999999999999 889999999999999998877654
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-16 Score=120.24 Aligned_cols=60 Identities=23% Similarity=0.421 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCC
Q 047550 112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRA 173 (395)
Q Consensus 112 ~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~ 173 (395)
+|+|.+++++||+|||++|+++|..||. +|.+||+ ++|||+.||++||.++|++.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 6899999999999999999999999995 8999999 8899999999999999999887653
No 24
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.60 E-value=5.8e-16 Score=121.36 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=54.4
Q ss_pred cccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 047550 165 LDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYRE 222 (395)
Q Consensus 165 L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~ 222 (395)
++|.+++++||+|||++|+++|.+||.+|..||+.|+|||++|||+||+.+++++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999999876544
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=6.8e-16 Score=118.77 Aligned_cols=55 Identities=24% Similarity=0.444 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc--CCChhhhhhhhhhccccccc
Q 047550 116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE--GRSGKSCRLRWFNQLDPRIN 170 (395)
Q Consensus 116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp--gRt~~QCr~RW~~~L~p~l~ 170 (395)
..++++||+|||++|+++|.+||.++|.+||+.++ |||+.||++||++++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999889999999976 99999999999999988764
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.8e-15 Score=114.65 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 168 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~ 168 (395)
++.+.+++||+|||++|+++|.+||.++|.+||+.|+|||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 5678999999999999999999999888999999999999999999999998754
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=119.54 Aligned_cols=60 Identities=28% Similarity=0.262 Sum_probs=46.1
Q ss_pred hHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550 104 EDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 104 qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
...-||.++|+|.+++|+||+|||++|+++|.+||. +|.+||+.| |||+.||++||..+.
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 345689999999999999999999999999999995 499999999 999999999998543
No 28
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.4e-15 Score=114.88 Aligned_cols=53 Identities=28% Similarity=0.618 Sum_probs=49.6
Q ss_pred ccccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 166 DPRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 166 ~p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+.+|++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence 4678999999999999999999999 6999999999999999999999988754
No 29
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.56 E-value=2.7e-15 Score=110.10 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=45.4
Q ss_pred cccCCCCHHHHHHHHHHHHHcCC-chhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 169 INKRAFSEDEEERLMAAHRVYGN-KWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+.+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999997 89999999999999999999999885
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=3e-15 Score=110.50 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc--CCChhhhhhhhhhccc
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE--GRSGKSCRLRWFNQLD 166 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp--gRt~~QCr~RW~~~L~ 166 (395)
++|+||+|||++|+++|.+||.++|..||..|+ |||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999999889999999999 9999999999999875
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=3.4e-15 Score=110.20 Aligned_cols=49 Identities=24% Similarity=0.538 Sum_probs=46.3
Q ss_pred ccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCC--CCCHHHHHHHHHHHHHH
Q 047550 170 NKRAFSEDEEERLMAAHRVYG-NKWAMIARLFP--GRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 170 ~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~--gRT~~qcknRw~~ilkk 218 (395)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999864
No 32
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.53 E-value=5.2e-15 Score=108.63 Aligned_cols=49 Identities=27% Similarity=0.698 Sum_probs=46.0
Q ss_pred cccCCCCHHHHHHHHHHHHHcCC-chhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 169 INKRAFSEDEEERLMAAHRVYGN-KWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+++++||+|||++|+++|.+||. +|..||..|+|||+.|||+||..+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999996 69999999999999999999998874
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.53 E-value=8.7e-15 Score=110.22 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-CCChhhhhhhhhhcc
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQL 165 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-gRt~~QCr~RW~~~L 165 (395)
+..+.+++||+|||++|+++|.+||.++|.+||+.|+ |||+.||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4456789999999999999999999889999999999 999999999999865
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.3e-15 Score=115.66 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=55.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----ChHHHHHHHccCCChhhhhhhhhhccccccccCC
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYGP-----QNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRA 173 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG~-----~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~ 173 (395)
+|.+.+++||+|||++|+++|.+||. .+|.+||+.|+|||+.||++||.++|.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999996 7899999999999999999999999988777664
No 35
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.53 E-value=6.8e-15 Score=115.21 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccccccc
Q 047550 113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINK 171 (395)
Q Consensus 113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~k 171 (395)
.+|.+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||.++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999995 8999999999999999999999999877665
No 36
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.52 E-value=6.8e-15 Score=114.26 Aligned_cols=57 Identities=23% Similarity=0.435 Sum_probs=52.1
Q ss_pred cccccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCC--CCCHHHHHHHHHHHHHHHHH
Q 047550 165 LDPRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFP--GRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 165 L~p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~--gRT~~qcknRw~~ilkkk~~ 221 (395)
..+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||+.+|++.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence 45677899999999999999999999 69999999999 99999999999999986553
No 37
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=9.8e-15 Score=110.54 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=48.0
Q ss_pred cccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 167 PRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 167 p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+.+.+++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||..++.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 568899999999999999999999 799999999999999999999998763
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=1.4e-14 Score=111.37 Aligned_cols=52 Identities=27% Similarity=0.574 Sum_probs=46.2
Q ss_pred ccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCC--CCCHHHHHHHHHHHHHHH
Q 047550 168 RINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFP--GRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 168 ~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~--gRT~~qcknRw~~ilkkk 219 (395)
..++++||+|||++|+++|.+|| ++|..||+.++ |||+.|||+||++++|..
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 35789999999999999999999 58999999865 999999999999998754
No 39
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.8e-15 Score=114.47 Aligned_cols=56 Identities=25% Similarity=0.429 Sum_probs=51.3
Q ss_pred ccccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 047550 166 DPRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 166 ~p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~ 221 (395)
.+.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+.+|++.++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence 4678999999999999999999999 7999999999999999999999998865443
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=5.4e-14 Score=105.87 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=45.6
Q ss_pred ccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCC-CCCHHHHHHHHHHHH
Q 047550 168 RINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFP-GRTDNAVKNHWHVIM 216 (395)
Q Consensus 168 ~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~-gRT~~qcknRw~~il 216 (395)
.+.+++||+|||++|+++|.+|| ++|.+||+.|+ |||+.|||+||..++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 46688999999999999999999 89999999999 999999999998753
No 41
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.1e-14 Score=113.03 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=50.4
Q ss_pred ccccccCCCCHHHHHHHHHHHHHcC------CchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 166 DPRINKRAFSEDEEERLMAAHRVYG------NKWAMIARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 166 ~p~l~kg~WT~EED~~Ll~lv~~~G------~kWs~IA~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
+|.+++++||+|||++|+++|.+|| .+|.+||..|+|||+.||++||+++|++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999 689999999999999999999988886533
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.43 E-value=2.8e-13 Score=109.35 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHH----ccCCChhhhhhhhhhcc-----ccccccC-CCCHHHHHHHHHHHHH
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEK----LEGRSGKSCRLRWFNQL-----DPRINKR-AFSEDEEERLMAAHRV 188 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~----lpgRt~~QCr~RW~~~L-----~p~l~kg-~WT~EED~~Ll~lv~~ 188 (395)
++||+|||+.|+++|++||.++|.+|++. |+|||+.+|++||++++ +|.++++ +..++...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999998899999996 89999999999999987 5766665 6777777888888754
No 43
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-14 Score=118.32 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=53.2
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 164 QLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 164 ~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
.+.|.+++++||+|||++|+++|.+||.+|..||..|+|||++||++||+.++++.-
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 467889999999999999999999999999999999999999999999999987643
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.36 E-value=5.7e-13 Score=111.95 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc----cCCChhhhhhhhhhcc-----ccccccCCCCHHHHHH-H
Q 047550 113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL----EGRSGKSCRLRWFNQL-----DPRINKRAFSEDEEER-L 182 (395)
Q Consensus 113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l----pgRt~~QCr~RW~~~L-----~p~l~kg~WT~EED~~-L 182 (395)
..+..++++||+|||+.|+++|++||.++|..|++.+ ++||+.+|++||++++ +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 3456788999999999999999999988999999965 8999999999999988 6889999888776554 6
Q ss_pred HHHHHHcC
Q 047550 183 MAAHRVYG 190 (395)
Q Consensus 183 l~lv~~~G 190 (395)
+++...+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.35 E-value=8.2e-13 Score=104.16 Aligned_cols=51 Identities=18% Similarity=0.451 Sum_probs=47.0
Q ss_pred cccccCCCCHHHHHHHHHHHHHcC----CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 167 PRINKRAFSEDEEERLMAAHRVYG----NKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 167 p~l~kg~WT~EED~~Ll~lv~~~G----~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+...+++||+|||++|++++.+|| .+|.+||.+|||||..||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999999 689999999999999999999998873
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=105.02 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=44.7
Q ss_pred ccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550 168 RINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI 215 (395)
Q Consensus 168 ~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i 215 (395)
...+++||+|||++|+++|.+||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999654
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=103.09 Aligned_cols=49 Identities=22% Similarity=0.542 Sum_probs=46.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhc
Q 047550 115 KVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ 164 (395)
Q Consensus 115 p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~ 164 (395)
....+++||+|||++|+++|.+|| .+|.+||++|++||+.||++||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 345678999999999999999999 8899999999999999999999988
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.95 E-value=2.9e-13 Score=110.37 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccc
Q 047550 112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167 (395)
Q Consensus 112 ~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p 167 (395)
...|.+.+|+||+|||++|+++|..||. +|..||..|+|||+.||++||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 4678899999999999999999999995 799999999999999999999998864
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.26 E-value=2.4e-12 Score=101.52 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---CChHHHHHHHccCCChhhhhhhhhhccc
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYG---PQNWNLIAEKLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG---~~nW~kIAk~lpgRt~~QCr~RW~~~L~ 166 (395)
.+...+++||+|||.+|++++..|| ..+|.+||+.|||||..||++||.+++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4566889999999999999999999 3579999999999999999999998764
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.25 E-value=6.8e-12 Score=95.63 Aligned_cols=50 Identities=20% Similarity=0.480 Sum_probs=46.2
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCchhhhh---hcCCCCCHHHHHHHHHHHHHH
Q 047550 169 INKRAFSEDEEERLMAAHRVYGNKWAMIA---RLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G~kWs~IA---~~l~gRT~~qcknRw~~ilkk 218 (395)
.++.+||+|||+.|+++|++||.+|..|+ ..+++||..++++||+.|+|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46889999999999999999999999999 577999999999999999863
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.25 E-value=7.2e-12 Score=101.08 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC-chhhhhhc----CCCCCHHHHHHHHHHHHHHHH
Q 047550 172 RAFSEDEEERLMAAHRVYGN-KWAMIARL----FPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----l~gRT~~qcknRw~~ilkkk~ 220 (395)
++||+|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999996 99999996 899999999999999997543
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.24 E-value=5.6e-12 Score=119.13 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=86.6
Q ss_pred cCCCcchhHHHHHhcCCCC-----ChHHHHhhcCCCCchhHHHHhhcCCCCCCC--------------------------
Q 047550 70 YCDSSDHQKSDLAAGGDSD-----NNNKVDESVDGYEDMEDVKKMDGGLSKVCS-------------------------- 118 (395)
Q Consensus 70 ~~~~eD~~L~~lv~~~~~~-----dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~-------------------------- 118 (395)
|+++||+.|.++|.+++.. .|.+||..|+||+..+|+.||..+|.+.+.
T Consensus 11 FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ikis~lp 90 (246)
T 1ign_A 11 FTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKVLP 90 (246)
T ss_dssp CCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCEESSCC
T ss_pred CCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCceeeeccC
Confidence 4589999999999999764 499999999999999999999999999986
Q ss_pred ---CCCCCHHHHHHHHHHHHH-h--------------------------------CC-----------------------
Q 047550 119 ---RGHWRPAEDSKLKELVAL-Y--------------------------------GP----------------------- 139 (395)
Q Consensus 119 ---kg~WT~EED~~L~~lV~~-y--------------------------------G~----------------------- 139 (395)
+.+||.|||-.|...+.+ + ++
T Consensus 91 ~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~ 170 (246)
T 1ign_A 91 PSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIA 170 (246)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCCC
T ss_pred ccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcch
Confidence 899999999999999987 1 11
Q ss_pred -ChHHHHHHHccCCChhhhhhhhhhccc
Q 047550 140 -QNWNLIAEKLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 140 -~nW~kIAk~lpgRt~~QCr~RW~~~L~ 166 (395)
..|.+||+.+|+||..+.|+||...|.
T Consensus 171 ~~~fk~ia~~~P~HT~~SWRdRyrKfl~ 198 (246)
T 1ign_A 171 REFFKHFAEEHAAHTENAWRDRFRKFLL 198 (246)
T ss_dssp TTHHHHHHHHTTTSCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCCCCChhhHHHHHHHHHh
Confidence 159999999999999999999998774
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.20 E-value=1.9e-11 Score=102.72 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=47.6
Q ss_pred cccccCCCCHHHHHHHHHHHHHcCC-chhhhhhcC----CCCCHHHHHHHHHHHHHH
Q 047550 167 PRINKRAFSEDEEERLMAAHRVYGN-KWAMIARLF----PGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 167 p~l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l----~gRT~~qcknRw~~ilkk 218 (395)
...++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4578899999999999999999996 999999965 899999999999999964
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.18 E-value=1.6e-11 Score=105.45 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=49.9
Q ss_pred cccccccCCCCHHHHHHHHHHHHHcCC-chhhhhhc----CCCCCHHHHHHHHHHHHHHH
Q 047550 165 LDPRINKRAFSEDEEERLMAAHRVYGN-KWAMIARL----FPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 165 L~p~l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----l~gRT~~qcknRw~~ilkkk 219 (395)
+.+..++++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456778999999999999999999996 99999997 48999999999999999753
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.17 E-value=3.7e-11 Score=98.85 Aligned_cols=50 Identities=32% Similarity=0.612 Sum_probs=45.5
Q ss_pred ccCCCCHHHHHHHHHHHHHcC----CchhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550 170 NKRAFSEDEEERLMAAHRVYG----NKWAMIARLFPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 170 ~kg~WT~EED~~Ll~lv~~~G----~kWs~IA~~l~gRT~~qcknRw~~ilkkk 219 (395)
.+++||+|||++|++++.+|| .+|.+||..|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999988654
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.13 E-value=5.6e-11 Score=102.24 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=47.6
Q ss_pred cccccCCCCHHHHHHHHHHHHHcCC-chhhhhhc----CCCCCHHHHHHHHHHHHHHH
Q 047550 167 PRINKRAFSEDEEERLMAAHRVYGN-KWAMIARL----FPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 167 p~l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----l~gRT~~qcknRw~~ilkkk 219 (395)
...++++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457889999999999999999995 99999986 48999999999999999754
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.04 E-value=1.4e-10 Score=95.39 Aligned_cols=49 Identities=22% Similarity=0.510 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CChHHHHHHHccCCChhhhhhhhhhcc
Q 047550 117 CSRGHWRPAEDSKLKELVALYG---PQNWNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG---~~nW~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
..+++||+|||++|++++..|| ..+|.+||+.|||||..+|++||..++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3568999999999999999997 467999999999999999999998875
No 58
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.92 E-value=8.7e-10 Score=84.02 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHH---HccCCChhhhhhhhhhccc
Q 047550 116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAE---KLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk---~lpgRt~~QCr~RW~~~L~ 166 (395)
..++.+||+|||+.|+++|++||. +|..|+. ++++||...+++||+++.+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 347889999999999999999995 8999995 6689999999999998764
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.90 E-value=2.7e-09 Score=87.68 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=58.4
Q ss_pred hhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcC-----CCCCHHHHHHHHHHHHHHHHHhh
Q 047550 155 KSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLF-----PGRTDNAVKNHWHVIMARKYREQ 223 (395)
Q Consensus 155 ~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l-----~gRT~~qcknRw~~ilkkk~~~~ 223 (395)
.=+.++|.++|.+ .+||.||+..|++++++||.+|..|+..+ ++||..++|+||..+.++.+...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4577899999875 89999999999999999999999999998 58999999999999998766554
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.4e-09 Score=81.15 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=43.2
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550 169 INKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI 215 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i 215 (395)
...++||+||++++++++.+||.+|..||..||+||..+|..+|...
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 34579999999999999999999999999999999999999999654
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=8.3e-09 Score=78.19 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=44.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550 116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
....++||+||++++++++..|| ++|..||..||+||..||..+|....
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 34568999999999999999999 78999999999999999999997543
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=7.1e-09 Score=81.37 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=44.6
Q ss_pred ccccCCCCHHHHHHHHHHHHHcC----CchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 168 RINKRAFSEDEEERLMAAHRVYG----NKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 168 ~l~kg~WT~EED~~Ll~lv~~~G----~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
..+.+.||.|||++|.+++.+|+ .+|.+||..+ |||..+|++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34577999999999999999997 5799999998 99999999999888643
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.74 E-value=9e-09 Score=96.56 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHH
Q 047550 129 KLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAV 208 (395)
Q Consensus 129 ~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qc 208 (395)
.|..|-.+. .+|+++-..|..+....+. +++..-........||+||++++++++.+||.+|..||+.|++||..||
T Consensus 94 ei~sLkrqI--q~~kQ~~~~L~~~~~~~Ie-~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~Qc 170 (235)
T 2iw5_B 94 ELVSVKRQI--QNIKQTNSALKEKLDGGIE-PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQV 170 (235)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHSTTTTG-GGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhhcc-cccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHH
Confidence 344444432 3577777666444433322 3333212223457899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 047550 209 KNHWHVIMA 217 (395)
Q Consensus 209 knRw~~ilk 217 (395)
|++|+...+
T Consensus 171 KnfY~~~kK 179 (235)
T 2iw5_B 171 KNFFVNYRR 179 (235)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHH
Confidence 999986664
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.65 E-value=2.5e-08 Score=78.25 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC---CChHHHHHHHccCCChhhhhhhhhhccc
Q 047550 116 VCSRGHWRPAEDSKLKELVALYG---PQNWNLIAEKLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 116 ~~~kg~WT~EED~~L~~lV~~yG---~~nW~kIAk~lpgRt~~QCr~RW~~~L~ 166 (395)
....+.||.|||++|.+++.+|+ ...|.+||..| |||..+|+.||..+.+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45678999999999999999997 35799999998 9999999999987654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.51 E-value=4.3e-08 Score=101.13 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550 172 RAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI 215 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i 215 (395)
..||+||-+++++++.+||.+|..||+.+++||..|||++|...
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999643
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=9.4e-08 Score=75.20 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=42.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCC----chhhhhhcCCCCCHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYGN----KWAMIARLFPGRTDNAVKNHWHVIM 216 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~l~gRT~~qcknRw~~il 216 (395)
...||.||+++|.+++..|+. +|.+||..++|||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 468999999999999999983 6999999999999999999998774
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.44 E-value=4e-07 Score=71.63 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---ChHHHHHHHccCCChhhhhhhhhhcccc
Q 047550 118 SRGHWRPAEDSKLKELVALYGP---QNWNLIAEKLEGRSGKSCRLRWFNQLDP 167 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~---~nW~kIAk~lpgRt~~QCr~RW~~~L~p 167 (395)
....||.+|+.+|.+++..|+. .+|.+||..|||||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999974 4799999999999999999999987653
No 68
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.40 E-value=3.6e-07 Score=85.80 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccc
Q 047550 117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~ 166 (395)
...++||+||++++++++.+|| ++|..||+.|++||..||+++|.++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999 789999999999999999999987764
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.38 E-value=2.8e-07 Score=69.52 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCChHHHHHH-HccCCChhhhhhhhhhccc
Q 047550 119 RGHWRPAEDSKLKELVALY--------GPQNWNLIAE-KLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~y--------G~~nW~kIAk-~lpgRt~~QCr~RW~~~L~ 166 (395)
|.+||+|||+.|+++|.+| |..-|.++++ .+|++|-.+||+||.+.|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5556999999 7999999999999998774
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.30 E-value=5.2e-07 Score=68.07 Aligned_cols=46 Identities=13% Similarity=0.384 Sum_probs=41.4
Q ss_pred cCCCCHHHHHHHHHHHHHc--------CCc-hhhhhh-cCCCCCHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVY--------GNK-WAMIAR-LFPGRTDNAVKNHWHVIM 216 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~--------G~k-Ws~IA~-~l~gRT~~qcknRw~~il 216 (395)
+.+||+|||..|++.|.+| |++ |.++++ .++++|-.+||+||.+.|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 443 999999 899999999999998765
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.21 E-value=4.9e-06 Score=81.54 Aligned_cols=104 Identities=15% Similarity=0.222 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhh----hc--c----------------------------
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWF----NQ--L---------------------------- 165 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~----~~--L---------------------------- 165 (395)
+.||..+...++.++.+||..+|..||..|+|+|...++..+. ++ +
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999889999999999999988865221 11 0
Q ss_pred -------c---------cccccCCCCHHHHHHHHHHHHHcCC----chhhhhh------------cCCCCCHHHHHHHHH
Q 047550 166 -------D---------PRINKRAFSEDEEERLMAAHRVYGN----KWAMIAR------------LFPGRTDNAVKNHWH 213 (395)
Q Consensus 166 -------~---------p~l~kg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~l~gRT~~qcknRw~ 213 (395)
+ +..+...||+|||..||-++.+||- .|..|-. .+..||+.+|..|..
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 0 1123457999999999999999994 5999962 457799999999999
Q ss_pred HHHHHHHHhh
Q 047550 214 VIMARKYREQ 223 (395)
Q Consensus 214 ~ilkkk~~~~ 223 (395)
.|++-..+..
T Consensus 271 tLi~~iekE~ 280 (304)
T 1ofc_X 271 TLITLIEREN 280 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9997654443
No 72
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.17 E-value=9.1e-07 Score=72.62 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=51.9
Q ss_pred hHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc-----cCCChhhhhhhhhhcccc
Q 047550 104 EDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL-----EGRSGKSCRLRWFNQLDP 167 (395)
Q Consensus 104 qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l-----pgRt~~QCr~RW~~~L~p 167 (395)
-+..+|..+|.+ +.||.||+..|++|+++|+ .+|..|+..+ ++||..++++||..+.+.
T Consensus 19 yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 19 YSEQEYQLYLHD----DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp CCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 467888888876 8999999999999999999 5699999999 489999999999876543
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.16 E-value=2.3e-06 Score=69.62 Aligned_cols=47 Identities=11% Similarity=0.285 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---chhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVYGN---KWAMIARLFPGRTDNAVKNHWHVIMARK 219 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~l~gRT~~qcknRw~~ilkkk 219 (395)
.||.|||..||..+++-|. .|..||+.|.+|+++||++||+.|++-.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6999999999999999996 6999999999999999999999999643
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.23 E-value=9e-07 Score=68.33 Aligned_cols=45 Identities=13% Similarity=0.346 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---chhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVYGN---KWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
.||.|||..||..+++-|. .|..||+.| +|+++||.+||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 699999999 99999999999999853
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.97 E-value=1.9e-06 Score=67.59 Aligned_cols=43 Identities=26% Similarity=0.449 Sum_probs=38.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCC----chhhhhhcCCCCCHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYGN----KWAMIARLFPGRTDNAVKNHWH 213 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~l~gRT~~qcknRw~ 213 (395)
...||.||+++|.+++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 6999999999999999999884
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.95 E-value=2.1e-05 Score=64.45 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhhhhhcCC-----CCCHHHHHHHHHHHHHHHHHhh
Q 047550 172 RAFSEDEEERLMAAHRVYGNKWAMIARLFP-----GRTDNAVKNHWHVIMARKYREQ 223 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l~-----gRT~~qcknRw~~ilkkk~~~~ 223 (395)
..||.||...|++++++|+.+|..|+..+. +||-.++|.||..+.++.++..
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999998763 7999999999999998766554
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=2.3e-05 Score=59.61 Aligned_cols=47 Identities=21% Similarity=0.455 Sum_probs=43.2
Q ss_pred cccccCCCCHHHHHHHHHHHHHcCCchhhhhh-cCCCCCHHHHHHHHH
Q 047550 167 PRINKRAFSEDEEERLMAAHRVYGNKWAMIAR-LFPGRTDNAVKNHWH 213 (395)
Q Consensus 167 p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~-~l~gRT~~qcknRw~ 213 (395)
|.+....||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 56777899999999999999999999999999 599999999988775
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=3e-05 Score=58.98 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=43.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHH-ccCCChhhhhhhhhh
Q 047550 114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEK-LEGRSGKSCRLRWFN 163 (395)
Q Consensus 114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~-lpgRt~~QCr~RW~~ 163 (395)
.|.+....||+||-++..+.+.+|| ++|..|++. |++|+..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 4566778999999999999999999 789999995 899999999988754
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.66 E-value=5.5e-06 Score=64.97 Aligned_cols=45 Identities=16% Similarity=0.410 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---hHHHHHHHccCCChhhhhhhhh
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQ---NWNLIAEKLEGRSGKSCRLRWF 162 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~---nW~kIAk~lpgRt~~QCr~RW~ 162 (395)
..+.||.||+++|..++..|+.. .|.+||..|||||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 34689999999999999999743 6999999999999999999984
No 80
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.44 E-value=0.00015 Score=75.03 Aligned_cols=47 Identities=15% Similarity=0.312 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
...+||.||-+++++++.+|| ++|..||+.|++||..||+.+|.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 357999999999999999999 78999999999999999999997643
No 81
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.42 E-value=0.0012 Score=60.44 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=72.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--CChHHHHHHH--ccCCChhhhhhhhhhc-------cc--------------------
Q 047550 118 SRGHWRPAEDSKLKELVALYG--PQNWNLIAEK--LEGRSGKSCRLRWFNQ-------LD-------------------- 166 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG--~~nW~kIAk~--lpgRt~~QCr~RW~~~-------L~-------------------- 166 (395)
....||..|-..|++++.+|| ...|..|+.. |.+++...++.-+... ++
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPT 85 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCE
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchh
Confidence 456899999999999999999 4679999976 5788887665422111 00
Q ss_pred --------------------------------------------cccccCCCCHHHHHHHHHHHHHcC-Cchhhhhh--c
Q 047550 167 --------------------------------------------PRINKRAFSEDEEERLMAAHRVYG-NKWAMIAR--L 199 (395)
Q Consensus 167 --------------------------------------------p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~--~ 199 (395)
+..-...||++||..||.++.+|| ++|..|-. .
T Consensus 86 ~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~ 165 (211)
T 4b4c_A 86 FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPD 165 (211)
T ss_dssp EEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSS
T ss_pred hhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChh
Confidence 000012599999999999999999 89999964 2
Q ss_pred --C----------CCCCHHHHHHHHHHHHHH
Q 047550 200 --F----------PGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 200 --l----------~gRT~~qcknRw~~ilkk 218 (395)
| ..++...+..|-..||+-
T Consensus 166 l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 166 LSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred cCccccccccccccCCChHHHHHHHHHHHHH
Confidence 1 124566799998888853
No 82
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.39 E-value=0.00024 Score=55.09 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCchhhhhh-cCCCCCHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYGNKWAMIAR-LFPGRTDNAVKNHWH 213 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~kWs~IA~-~l~gRT~~qcknRw~ 213 (395)
...||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999 599999999998886
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.37 E-value=0.00024 Score=58.13 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWH 213 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~ 213 (395)
...||+||.++..+++..||.+|..|+..|++||..+|-..|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHh
Confidence 4689999999999999999999999999999999999998775
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.30 E-value=0.00023 Score=58.25 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163 (395)
Q Consensus 119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~ 163 (395)
...||+||.++..+....|| ++|..|+..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45899999999999999999 789999999999999999988753
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.30 E-value=0.00027 Score=54.82 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHH-HccCCChhhhhhhhhh
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAE-KLEGRSGKSCRLRWFN 163 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk-~lpgRt~~QCr~RW~~ 163 (395)
....||+||-++..+.+.+|| ++|..|++ .|++|+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 346899999999999999999 78999999 5899999999988763
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.22 E-value=0.0011 Score=66.44 Aligned_cols=103 Identities=22% Similarity=0.393 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-CCChhhhhhhhhhcc---------------------------------
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQL--------------------------------- 165 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-gRt~~QCr~RW~~~L--------------------------------- 165 (395)
+.||.-|=..++.+..+||..+-..||..|. |.|...++. |...+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999888999999997 899988874 22211
Q ss_pred ---------cc----------c-cccCCCCHHHHHHHHHHHHHcC----Cchhhhhhc------------CCCCCHHHHH
Q 047550 166 ---------DP----------R-INKRAFSEDEEERLMAAHRVYG----NKWAMIARL------------FPGRTDNAVK 209 (395)
Q Consensus 166 ---------~p----------~-l~kg~WT~EED~~Ll~lv~~~G----~kWs~IA~~------------l~gRT~~qck 209 (395)
+| . .+...||++||..||-++.+|| +.|.+|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 01 0 1345799999999999999999 459999332 5779999999
Q ss_pred HHHHHHHHHHHHhh
Q 047550 210 NHWHVIMARKYREQ 223 (395)
Q Consensus 210 nRw~~ilkkk~~~~ 223 (395)
.|...|++-..+..
T Consensus 283 rRc~tLi~~IeKE~ 296 (374)
T 2y9y_A 283 RRGNTLLQCLEKEF 296 (374)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999997655443
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.03 E-value=0.00041 Score=55.29 Aligned_cols=48 Identities=17% Similarity=0.431 Sum_probs=39.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCC----------chhhhhhcCC----CCCHHHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYGN----------KWAMIARLFP----GRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~----------kWs~IA~~l~----gRT~~qcknRw~~ilkk 218 (395)
...||.+|-..||++..++.. .|..||..|. .||+.||+++|.+|.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999976321 3999998763 69999999999988753
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.01 E-value=0.00058 Score=55.54 Aligned_cols=46 Identities=13% Similarity=0.309 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC--ChHHHHHHHccCCChhhhhhhhhhcc
Q 047550 120 GHWRPAEDSKLKELVALYGP--QNWNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~--~nW~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
-.||.|||..|+...++-|. ..|..||+.|.+|++.|+++|++.++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 36999999999999999985 36999999999999999999997643
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.97 E-value=0.00059 Score=54.35 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---------hHHHHHHHcc----CCChhhhhhhhhhccc
Q 047550 118 SRGHWRPAEDSKLKELVALYGPQ---------NWNLIAEKLE----GRSGKSCRLRWFNQLD 166 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~~---------nW~kIAk~lp----gRt~~QCr~RW~~~L~ 166 (395)
+...||.+|-..|+.+....... .|..||..|. .||+.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999864211 4999999983 6999999999988653
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.83 E-value=0.0002 Score=55.31 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHhCC--ChHHHHHHHccCCChhhhhhhhhhccc
Q 047550 121 HWRPAEDSKLKELVALYGP--QNWNLIAEKLEGRSGKSCRLRWFNQLD 166 (395)
Q Consensus 121 ~WT~EED~~L~~lV~~yG~--~nW~kIAk~lpgRt~~QCr~RW~~~L~ 166 (395)
.||.|||..|+...++-|. ..|..||+.| +|++.|+.+|+..++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999985 3699999999 9999999999987653
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.92 E-value=0.0063 Score=49.77 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-----CCChhhhhhhhhhccc
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLE-----GRSGKSCRLRWFNQLD 166 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-----gRt~~QCr~RW~~~L~ 166 (395)
..||.||...|++|+.+|. ..|..|+.... .||..+.++||..+..
T Consensus 31 ~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999 66999999983 6999999999987654
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.64 E-value=0.17 Score=38.57 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=40.9
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCc---hhhhhhcC--CCCCHHHHHHHHHHHH
Q 047550 169 INKRAFSEDEEERLMAAHRVYGNK---WAMIARLF--PGRTDNAVKNHWHVIM 216 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~l--~gRT~~qcknRw~~il 216 (395)
..+-.||+|..+..+++|.++|.. +..|.+.| +|.|..+|+.+.+++.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999954 78998875 6899999999987654
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.48 E-value=0.18 Score=38.41 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=41.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCh--HHHHHHHc--cCCChhhhhhhhhhc
Q 047550 116 VCSRGHWRPAEDSKLKELVALYGPQN--WNLIAEKL--EGRSGKSCRLRWFNQ 164 (395)
Q Consensus 116 ~~~kg~WT~EED~~L~~lV~~yG~~n--W~kIAk~l--pgRt~~QCr~RW~~~ 164 (395)
...+-.||+|.-++.+++|+..|..+ ++.|.+.| +|.|..+++.+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34677999999999999999999432 89999998 689999999887654
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.91 E-value=0.16 Score=49.68 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=42.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCC-chhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYGN-KWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
.+.||..|...++.++.+||. .|..||..|+|+|...|+..+.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 457999999999999999994 799999999999999998777666654
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.08 E-value=0.34 Score=43.89 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=41.6
Q ss_pred cccCCCCHHHHHHHHHHHHHcC---Cchhhhhhc--CCCCCHHHHHHHHHHHHHH
Q 047550 169 INKRAFSEDEEERLMAAHRVYG---NKWAMIARL--FPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 169 l~kg~WT~EED~~Ll~lv~~~G---~kWs~IA~~--l~gRT~~qcknRw~~ilkk 218 (395)
-....||+.|=..|+.++.+|| .+|..|+.. |.+||...++..+..++..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999 579999864 7899999999888777754
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.96 E-value=0.51 Score=45.32 Aligned_cols=28 Identities=36% Similarity=0.606 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHH
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAE 147 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk 147 (395)
..|+.+||..|+..|.+||-++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999964
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=75.99 E-value=14 Score=35.21 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=44.5
Q ss_pred cCCCCHHHHHHHHHHHHHcC---Cchhhhhh--cCCCCCHHHHHHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYG---NKWAMIAR--LFPGRTDNAVKNHWHVIMARKYR 221 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G---~kWs~IA~--~l~gRT~~qcknRw~~ilkkk~~ 221 (395)
+++||+-|=..|+.++.+|| .+|..|+. .|+.++...++.-+..++..-..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~ 58 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKD 58 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999976 58899999999999988865443
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=75.94 E-value=2.5 Score=42.36 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---ChHHHHHHHc------------cCCChhhhhhhh
Q 047550 118 SRGHWRPAEDSKLKELVALYGP---QNWNLIAEKL------------EGRSGKSCRLRW 161 (395)
Q Consensus 118 ~kg~WT~EED~~L~~lV~~yG~---~nW~kIAk~l------------pgRt~~QCr~RW 161 (395)
++..||.+||..|+-++.+||- ++|.+|-..+ ..||+..+..|-
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc 285 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG 285 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 4568999999999999999998 8899996654 247777776664
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.58 E-value=13 Score=26.42 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+.+..++.++...|-.+.+||..+ |-+...|+.+....++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARD 57 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 445556666667788999999999 8899999988877664
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.82 E-value=8 Score=32.03 Aligned_cols=36 Identities=17% Similarity=0.383 Sum_probs=29.2
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCCCCHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPGRTDNAVKNHWHVIM 216 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~gRT~~qcknRw~~il 216 (395)
+|..+|.+.|+ .|.+||..|.--....+|..|.++|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L 96 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRIL 96 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHH
Confidence 68888888885 5999999875444788999998877
No 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=54.93 E-value=18 Score=30.34 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCC-------hHHHHHHHccC-C----ChhhhhhhhhhccccccccCCCCHHHHHHHHHHHH
Q 047550 128 SKLKELVALYGPQ-------NWNLIAEKLEG-R----SGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHR 187 (395)
Q Consensus 128 ~~L~~lV~~yG~~-------nW~kIAk~lpg-R----t~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~ 187 (395)
-+|..+|.+.|.- .|.+|+..|.- . .....+..|.++|.+-- ..+++|-..|.+-|.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 3677788888732 49999999921 2 23567888998887643 378899888887764
No 102
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=53.48 E-value=18 Score=26.50 Aligned_cols=41 Identities=10% Similarity=0.207 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHH----cCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRV----YGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 177 EED~~Ll~lv~~----~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
+.+..++.+..- .|..|.+||..+ |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344455555554 577899999999 89999999988777643
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=51.09 E-value=19 Score=29.01 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=27.3
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCCCC----HHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPGRT----DNAVKNHWHVIMA 217 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~gRT----~~qcknRw~~ilk 217 (395)
.|..+|.+.|+ .|.+|+..|.--. ..++|..|.++|-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 57788888885 5999999984322 4677888877763
No 104
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=50.59 E-value=18 Score=32.19 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=28.2
Q ss_pred hHHHHhhcCCC-CCCCCCCCCHHHHHHHH--------HHHHHhCCChHHHHH
Q 047550 104 EDVKKMDGGLS-KVCSRGHWRPAEDSKLK--------ELVALYGPQNWNLIA 146 (395)
Q Consensus 104 qcr~Rw~~~l~-p~~~kg~WT~EED~~L~--------~lV~~yG~~nW~kIA 146 (395)
.....|..... |....|-||+|+|+.|. +|++++| |..|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 44555666555 56889999999998775 5677776 55554
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=50.44 E-value=11 Score=31.78 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=29.0
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+|..+|.+.|+ .|.+|+..|.--....+|..|.++|-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILL 96 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 57778888885 49999998744448889999988874
No 106
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.94 E-value=16 Score=30.19 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=27.6
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCCCC----HHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPGRT----DNAVKNHWHVIMA 217 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~gRT----~~qcknRw~~ilk 217 (395)
+|..+|.+.|+ .|.+|+..|.--. ...+|..|.++|-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 68888888885 5999999883322 4578888877763
No 107
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.93 E-value=22 Score=29.68 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=25.9
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCCCC----HHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPGRT----DNAVKNHWHVIM 216 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~gRT----~~qcknRw~~il 216 (395)
+|..+|.+.|+ .|.+|+..|.--. ...+|..|.++|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 67788888885 5999999883322 346777776666
No 108
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=44.62 E-value=20 Score=25.88 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=29.1
Q ss_pred HHHHHHHHHH----HcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 178 EEERLMAAHR----VYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 178 ED~~Ll~lv~----~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
.+..++.+.. ..|..+.+||..+ |-+...|+.+....++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALR 51 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3444555544 3467899999999 8999999998877663
No 109
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=43.56 E-value=22 Score=29.67 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=25.9
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCCCC----HHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPGRT----DNAVKNHWHVIM 216 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~gRT----~~qcknRw~~il 216 (395)
+|..+|.+.|+ .|.+|+..|.--+ ...+|..|.++|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L 102 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYL 102 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 67888888885 5999999883322 346777776666
No 110
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=43.56 E-value=20 Score=30.96 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=28.3
Q ss_pred HHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHH
Q 047550 142 WNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMA 184 (395)
Q Consensus 142 W~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~ 184 (395)
=..||..+.|+|+.+||..+ ++ ...+|+||++.+.+
T Consensus 118 c~~vA~~ikgkt~eeir~~f------~I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIKGKTPEEIRTTF------NI-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTTTCCHHHHHHHT------TC-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHc------CC-CCCCCHHHHHHHHH
Confidence 36788999999999999976 23 33599999987654
No 111
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=43.44 E-value=1.3e+02 Score=24.47 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhc------cccccc----cCCCCHHHHHHHHHHHHHc
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ------LDPRIN----KRAFSEDEEERLMAAHRVY 189 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~------L~p~l~----kg~WT~EED~~Ll~lv~~~ 189 (395)
...|.++-..++.++. -| ....+||+.+ |.+...++. |.+. +.+... ....++++.+.|++++.+.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~l-gis~~TV~r-w~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQL-RVSHGCVSK-ILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHH-HHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHH-HHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 4789999888888884 45 5689999999 666655543 3322 222211 2347888888888888765
Q ss_pred C
Q 047550 190 G 190 (395)
Q Consensus 190 G 190 (395)
+
T Consensus 107 ~ 107 (149)
T 1k78_A 107 P 107 (149)
T ss_dssp T
T ss_pred c
Confidence 3
No 112
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=42.10 E-value=84 Score=27.94 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCh--HHHHHHHccCCChh---hhhhhhhhccc-cccccCCCCHHHHHHHH
Q 047550 126 EDSKLKELVALYGPQN--WNLIAEKLEGRSGK---SCRLRWFNQLD-PRINKRAFSEDEEERLM 183 (395)
Q Consensus 126 ED~~L~~lV~~yG~~n--W~kIAk~lpgRt~~---QCr~RW~~~L~-p~l~kg~WT~EED~~Ll 183 (395)
-+.++..|..+.|..+ =..|-..+.+.+-. .+-+.|..-.. |.-..|-||.|+|+.|.
T Consensus 63 ~~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 63 AEKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 3455566667777553 23444445444433 44445544333 34567899999999876
No 113
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.94 E-value=56 Score=27.31 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=28.2
Q ss_pred HHHHHHHHcCC--------chhhhhhcC--CCC---CHHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLF--PGR---TDNAVKNHWHVIMA 217 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l--~gR---T~~qcknRw~~ilk 217 (395)
+|..+|.+.|+ .|.+||..| +.- ....+|..|.++|-
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 68888999986 599999987 321 24678999988874
No 114
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=40.76 E-value=21 Score=29.39 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC-------ChHHHHHHHccCCChhhhhhhhhhcccc
Q 047550 129 KLKELVALYGP-------QNWNLIAEKLEGRSGKSCRLRWFNQLDP 167 (395)
Q Consensus 129 ~L~~lV~~yG~-------~nW~kIAk~lpgRt~~QCr~RW~~~L~p 167 (395)
+|..+|.+.|. +.|.+|+..|.--....++..|.++|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 68888888873 2599999999443478888888888764
No 115
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=39.62 E-value=37 Score=25.97 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
+.+..++.++...|-.-.+||..+ |-+...|+.|....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345556666666788899999999 89999999988776643
No 116
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=38.37 E-value=21 Score=30.53 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550 125 AEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 168 (395)
Q Consensus 125 EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~ 168 (395)
+-|.+|+.+..+.|.-.|.+||+.+ |-+...|+.|+.++.+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 5688899999988878899999999 899999999998765443
No 117
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=37.97 E-value=26 Score=30.73 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=28.0
Q ss_pred HHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHH
Q 047550 142 WNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLM 183 (395)
Q Consensus 142 W~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll 183 (395)
=..||..+.|+|+.++|..+. + ...||+||++.+.
T Consensus 126 c~~vA~~ikgktpeeiR~~f~------I-~nd~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFN------I-VNDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT------C-CCCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHH
Confidence 578899999999999999762 2 2359999998754
No 118
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.97 E-value=34 Score=29.13 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 177 EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
+-|.+|+.++++-| -.|.+||+.+ |-+...|+.|++.+.+..+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45788999988877 4699999999 9999999999988886655
No 119
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=35.48 E-value=34 Score=29.40 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=27.0
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCC--C---CHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPG--R---TDNAVKNHWHVIM 216 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~g--R---T~~qcknRw~~il 216 (395)
+|..+|.+.|+ .|.+|+..|.- . ....+|..|.++|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L 116 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYL 116 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHH
Confidence 57788888885 59999998732 2 2467888887777
No 120
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=34.45 E-value=16 Score=28.95 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=24.9
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCCC----CHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPGR----TDNAVKNHWHVIM 216 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~gR----T~~qcknRw~~il 216 (395)
+|..+|.+.|+ .|.+|+..|.-- ...++|..|.++|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L 87 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERIL 87 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTT
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHH
Confidence 57777887774 599999987321 1456777776655
No 121
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.56 E-value=41 Score=28.06 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCC--------chhhhhhcCC--CC---CHHHHHHHHHHHHH
Q 047550 180 ERLMAAHRVYGN--------KWAMIARLFP--GR---TDNAVKNHWHVIMA 217 (395)
Q Consensus 180 ~~Ll~lv~~~G~--------kWs~IA~~l~--gR---T~~qcknRw~~ilk 217 (395)
-+|..+|.+.|+ .|.+|+..|. .. ....+|..|.++|-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 368888888885 5999999873 22 24678888888774
No 122
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.75 E-value=76 Score=22.95 Aligned_cols=41 Identities=29% Similarity=0.276 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 174 FSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 174 WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
.|+.|-+ ++.++ ..|..-.+||..+ |-+...|+.+...+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4455544 44454 5677899999999 8899999988877664
No 123
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.16 E-value=1.9e+02 Score=22.87 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccc------ccccCCCCHHHHHHHHHHHHHcCCch
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP------RINKRAFSEDEEERLMAAHRVYGNKW 193 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p------~l~kg~WT~EED~~Ll~lv~~~G~kW 193 (395)
...|.++-..++.++. -| ..-.+||+.+ |.+...++. |...... .......+++++..|+.+...-+-.=
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~l-gis~~Tv~r-~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKI-SRSRHCIRV-YLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHH-HHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHH-HHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 4678888888888774 45 4689999999 777777654 4332221 11123578888888887733322334
Q ss_pred hhhhhcCCC-CCHHHHHHH
Q 047550 194 AMIARLFPG-RTDNAVKNH 211 (395)
Q Consensus 194 s~IA~~l~g-RT~~qcknR 211 (395)
.+|+..|+- -+...|...
T Consensus 81 ~~i~~~lg~~~s~~tV~r~ 99 (141)
T 1u78_A 81 RDIRNELQLSASKRTILNV 99 (141)
T ss_dssp HHHHHHTTCCSCHHHHHHH
T ss_pred HHHHHHHCCCccHHHHHHH
Confidence 678887721 456666543
No 124
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=31.76 E-value=32 Score=29.52 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHhCCCh-----HHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHH
Q 047550 122 WRPAEDSKLKELVALYGPQN-----WNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMA 184 (395)
Q Consensus 122 WT~EED~~L~~lV~~yG~~n-----W~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~ 184 (395)
.+.+.-..|+.+..-++... =..||..+.|+|+.+||..+. + ...+|+||++.+.+
T Consensus 94 id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~------I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 94 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN------I-KNDFTEEEEAQVRK 154 (159)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTT------C-CCCSCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 45555556666666665432 356888899999999999872 2 23599999987543
No 125
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=30.94 E-value=45 Score=27.43 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCC-------ChHHHHHHHccCCC----hhhhhhhhhhcccc
Q 047550 128 SKLKELVALYGP-------QNWNLIAEKLEGRS----GKSCRLRWFNQLDP 167 (395)
Q Consensus 128 ~~L~~lV~~yG~-------~nW~kIAk~lpgRt----~~QCr~RW~~~L~p 167 (395)
-+|..+|.+.|. +.|.+|+..|.--. ..+.+..|.++|.+
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 368888888873 25999999993221 45678888887754
No 126
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.84 E-value=2.3e+02 Score=23.40 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc------ccccc----cCCCCHHHHHHHHHHHHHc
Q 047550 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL------DPRIN----KRAFSEDEEERLMAAHRVY 189 (395)
Q Consensus 120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L------~p~l~----kg~WT~EED~~Ll~lv~~~ 189 (395)
...|.++-..++.++. -| ....+||+.+ |.+...++ ||.+.. .+... ....++++.+.|++++.+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~l-gis~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQL-RVSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHH-TCCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 3688888888888884 46 5689999999 66666554 454432 22111 2347888888888887654
No 127
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.72 E-value=64 Score=24.41 Aligned_cols=39 Identities=8% Similarity=0.056 Sum_probs=29.0
Q ss_pred HHHHHHHHHHH----cCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 178 EEERLMAAHRV----YGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 178 ED~~Ll~lv~~----~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
.+..++.+..- .|-.+.+||..+ |-+...|+.+....++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALR 64 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 34455555544 567899999999 8999999988776663
No 128
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.64 E-value=47 Score=27.83 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=26.0
Q ss_pred HHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 185 AHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 185 lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
+....|-...+||..+ |-+...|+++....+++
T Consensus 146 l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 146 RAFFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3334577899999999 88999999988777643
No 129
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=29.93 E-value=22 Score=28.80 Aligned_cols=36 Identities=17% Similarity=0.457 Sum_probs=26.3
Q ss_pred HHHHHHHHcCC--------chhhhhhcCCC--C---CHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGN--------KWAMIARLFPG--R---TDNAVKNHWHVIM 216 (395)
Q Consensus 181 ~Ll~lv~~~G~--------kWs~IA~~l~g--R---T~~qcknRw~~il 216 (395)
.|..+|.+.|+ .|.+|+..|.- . ...++|..|.++|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L 85 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLI 85 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 67788888884 59999998732 1 2357888887766
No 130
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=29.22 E-value=69 Score=26.94 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=24.4
Q ss_pred HcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 188 VYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 188 ~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
..|-...+||..+ |-+...|+.+....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467799999999 89999999988777643
No 131
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=29.11 E-value=81 Score=22.32 Aligned_cols=43 Identities=21% Similarity=0.157 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 172 RAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
..+|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+...+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 4577777665544 4 5677899999999 8899999988877663
No 132
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.92 E-value=85 Score=24.21 Aligned_cols=42 Identities=21% Similarity=0.128 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
..|+.|-+.|. ++ ..|..-.+||..+ |-+...|+.+...+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 46666665544 45 6788889999999 8899999998877664
No 133
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.29 E-value=96 Score=25.56 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 047550 177 DEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARKYRE 222 (395)
Q Consensus 177 EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~ 222 (395)
+-|..|+.++.+.| -.+.+||+.+ |-+...|+.|.+.+.+..+-.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44667888888776 4699999999 789999999998888765543
No 134
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.62 E-value=84 Score=23.53 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
..|+.|-+.|.- + ..|..-.+||+.+ |-+...|+.+...+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLK 62 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 466666655444 4 5677899999999 8999999988876664
No 135
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=27.50 E-value=43 Score=26.30 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=26.5
Q ss_pred HHHHHHHHhCC-------ChHHHHHHHccC-C---Chhhhhhhhhhcccc
Q 047550 129 KLKELVALYGP-------QNWNLIAEKLEG-R---SGKSCRLRWFNQLDP 167 (395)
Q Consensus 129 ~L~~lV~~yG~-------~nW~kIAk~lpg-R---t~~QCr~RW~~~L~p 167 (395)
+|..+|.+.|. +.|.+|+..|.- . ...+++..|.++|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 56777777652 259999999932 1 245778888877754
No 136
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=27.33 E-value=89 Score=24.09 Aligned_cols=34 Identities=24% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNH 211 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknR 211 (395)
-|...|.+++..+|++.++.|+.| |=+...+..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 477788899999999999999998 7666666443
No 137
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=27.08 E-value=78 Score=22.66 Aligned_cols=33 Identities=15% Similarity=0.014 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKN 210 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qckn 210 (395)
-|.+.|.+++..+|+++++.|+.+ |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477788899999999999999988 555554433
No 138
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.05 E-value=1.2e+02 Score=23.44 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=34.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 171 KRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 171 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3457877776655444 788889999999 89999999998887643
No 139
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.69 E-value=60 Score=28.02 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccc
Q 047550 125 AEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167 (395)
Q Consensus 125 EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p 167 (395)
+-|.+|+.++...+...+.+||+.+ |-+...|+.|...+.+.
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 5677888888888878899999999 78999999998776443
No 140
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.33 E-value=83 Score=27.12 Aligned_cols=43 Identities=7% Similarity=0.206 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 177 EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
+-|.+|+.++++.| ..+.+||+.+ |-+...|+.|.+.+.+..+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45678888888877 4699999999 7899999999988876544
No 141
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=25.93 E-value=54 Score=26.35 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCC-------ChHHHHHHHccC-----CChhhhhhhhhhcccc
Q 047550 128 SKLKELVALYGP-------QNWNLIAEKLEG-----RSGKSCRLRWFNQLDP 167 (395)
Q Consensus 128 ~~L~~lV~~yG~-------~nW~kIAk~lpg-----Rt~~QCr~RW~~~L~p 167 (395)
-+|..+|.+.|. +.|.+|+..|.. -...+++..|.++|-+
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 367777777762 259999999932 1235778888887765
No 142
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=25.71 E-value=31 Score=28.87 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=27.1
Q ss_pred HHHHHHHHhCC-------ChHHHHHHHccCCChhhhhhhhhhcccc
Q 047550 129 KLKELVALYGP-------QNWNLIAEKLEGRSGKSCRLRWFNQLDP 167 (395)
Q Consensus 129 ~L~~lV~~yG~-------~nW~kIAk~lpgRt~~QCr~RW~~~L~p 167 (395)
+|..+|.+.|. +.|.+|+..|.--.....+..|.++|-+
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 56666666652 2599999999433377888888777654
No 143
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=25.02 E-value=58 Score=27.02 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCC-------hHHHHHHHccC-C---Chhhhhhhhhhcccc
Q 047550 128 SKLKELVALYGPQ-------NWNLIAEKLEG-R---SGKSCRLRWFNQLDP 167 (395)
Q Consensus 128 ~~L~~lV~~yG~~-------nW~kIAk~lpg-R---t~~QCr~RW~~~L~p 167 (395)
-+|..+|.+.|.- .|.+|+..|.- . ....++..|.++|.+
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 3678888887732 59999999932 2 235677777777754
No 144
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.97 E-value=1.1e+02 Score=20.96 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 179 D~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
+..++.+ ...|..-.+||..+ |-+...|+.+...+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3445555 35677789999999 8899999998877664
No 145
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.76 E-value=56 Score=26.18 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCC-------ChHHHHHHHccCCC----hhhhhhhhhhcccc
Q 047550 128 SKLKELVALYGP-------QNWNLIAEKLEGRS----GKSCRLRWFNQLDP 167 (395)
Q Consensus 128 ~~L~~lV~~yG~-------~nW~kIAk~lpgRt----~~QCr~RW~~~L~p 167 (395)
-+|..+|.+.|. +.|.+|+..|.--. ..+.+..|.++|-+
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 367777887773 25999999993222 35667777766643
No 146
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.61 E-value=60 Score=26.91 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCC-------ChHHHHHHHccCCC----hhhhhhhhhhcccc
Q 047550 128 SKLKELVALYGP-------QNWNLIAEKLEGRS----GKSCRLRWFNQLDP 167 (395)
Q Consensus 128 ~~L~~lV~~yG~-------~nW~kIAk~lpgRt----~~QCr~RW~~~L~p 167 (395)
-+|..+|.+.|. +.|.+|+..|.--. ....+..|.++|-+
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 367788888873 25999999993221 24667777777643
No 147
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.29 E-value=1.1e+02 Score=25.36 Aligned_cols=43 Identities=7% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARKY 220 (395)
Q Consensus 177 EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk~ 220 (395)
+-|..|+.++.+.| ..+.+||+.+ |-+...|..|.+.+.+..+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34667888888777 4699999999 8899999999988876654
No 148
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.15 E-value=1.1e+02 Score=24.64 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 178 EEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 178 ED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
.+..++.++...|-...+||..+ |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556666667788899999999 88999999888776643
No 149
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=23.43 E-value=70 Score=25.48 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHccCCCh---hhhhhhhhhccccccccCCCCHHHHHHHH
Q 047550 127 DSKLKELVALYGPQNWNLIAEKLEGRSG---KSCRLRWFNQLDPRINKRAFSEDEEERLM 183 (395)
Q Consensus 127 D~~L~~lV~~yG~~nW~kIAk~lpgRt~---~QCr~RW~~~L~p~l~kg~WT~EED~~Ll 183 (395)
+..|.+||+.|| |...+..+.-|+- -.++.- | .-+++.+|-.+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~CF~~~PSikSS----L-KFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNINCFKKDPSIKSS----L-KFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSSSTTSSCCHHHH----H-HHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccCCCCCchHHH----H-HHHhcCHhHHHHHHHHH
Confidence 578999999999 9999998853321 111110 0 02467888887766554
No 150
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.39 E-value=1e+02 Score=24.82 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 181 RLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 181 ~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
.++. ....|-...+||+.+ |-+...|+.+....+++
T Consensus 116 ~v~~-~~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 116 EVLT-YLIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HHHH-HHTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHH-HHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3444 455677899999999 89999999988776643
No 151
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=21.95 E-value=1.1e+02 Score=26.44 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR 218 (395)
Q Consensus 177 EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk 218 (395)
+.+..++.+....|-...+||+.+ |-+...|+.+....+++
T Consensus 190 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 190 EREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 344455555555677899999999 89999998888766643
No 152
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.89 E-value=1e+02 Score=23.29 Aligned_cols=42 Identities=29% Similarity=0.195 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550 173 AFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217 (395)
Q Consensus 173 ~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk 217 (395)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+...+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILS 70 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 35666655554 44 5688889999999 8899999998877664
No 153
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=21.56 E-value=79 Score=26.27 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCC-------ChHHHHHHHcc--CC---Chhhhhhhhhhcccc
Q 047550 128 SKLKELVALYGP-------QNWNLIAEKLE--GR---SGKSCRLRWFNQLDP 167 (395)
Q Consensus 128 ~~L~~lV~~yG~-------~nW~kIAk~lp--gR---t~~QCr~RW~~~L~p 167 (395)
-+|..+|.+.|. +.|.+|+..|. .. ....++..|.++|.+
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 368888888873 25999999993 22 245778888888765
No 154
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.02 E-value=2.1e+02 Score=24.28 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCC-------hHHHHHHHcc--CC---Chhhhhhhhhhcccc--ccccCCCCHHH
Q 047550 128 SKLKELVALYGPQ-------NWNLIAEKLE--GR---SGKSCRLRWFNQLDP--RINKRAFSEDE 178 (395)
Q Consensus 128 ~~L~~lV~~yG~~-------nW~kIAk~lp--gR---t~~QCr~RW~~~L~p--~l~kg~WT~EE 178 (395)
-+|..+|.+.|.- .|.+|+..|. .. ....++..|.++|-+ ...+|.=.++|
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~ 131 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNE 131 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4788888888732 4999999993 21 245778888888876 22344434443
No 155
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.83 E-value=84 Score=25.94 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550 125 AEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL 165 (395)
Q Consensus 125 EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L 165 (395)
+-|.+|+.++...+.-.+.+||+.+ |-+...|+.|...+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLK 48 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4566788888888877899999999 789999998887654
Done!