BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047551
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 48/67 (71%)
Query: 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSR 165
+ DYY ILGV R S E+++KAYR+L+LK HPDKN APG+ EAFK + A+ LS+ + R
Sbjct: 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 166 RHYDHVG 172
+ YD G
Sbjct: 66 KQYDQFG 72
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSR 165
KDYY LG+ R S EEI++AYR+ +L+ HPDKNK PG+EE FK++ +A+ LSD R
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 166 RHYDHVG 172
+D G
Sbjct: 62 EIFDRYG 68
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 49/65 (75%)
Query: 108 DYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRH 167
D Y +LGV R+ S +I+KAY+KL+ + HPDKNK PG+E+ F ++ KA++ LS+++ R +
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 168 YDHVG 172
YDH G
Sbjct: 78 YDHYG 82
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%)
Query: 109 YYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHY 168
YY ILGV +S S +I+KA+ KL++K HPDKNK+P +E F+++ +A++ LSD + R+ Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 169 DHVG 172
D +G
Sbjct: 69 DTLG 72
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 92 YTEEHVELIRQIKRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKK 151
+T+E + IR+I+ +KD + +LGV+ S +E+ KAYRKL++ +HPDK APGSE+AFK
Sbjct: 12 FTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKA 71
Query: 152 VCKAFKCL 159
V A L
Sbjct: 72 VVNARTAL 79
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRR 166
KDYYAILGV+ + ++ I+ AYR+L+ K HPD +K +E FK + +A++ L D+ R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 167 HYDHVGLVDEFEHNQRHNVXXXXXXAQHDFFDDELDPDEIFRSFFGQQ 214
YD + ++H R++ H+ + D D+IF S FGQQ
Sbjct: 88 EYDQL-----WQH--RNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQ 128
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 109 YYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHY 168
YY +LGV+ S E++KAYRK++LK HPDKN P E FK++ +A++ LSD+ R+ Y
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 169 DHVG 172
D G
Sbjct: 68 DQGG 71
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 46/65 (70%)
Query: 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRR 166
KDYYAI+GV+ + ++ I+ AYR+L+ K HPD +K P +E FK+V +A++ LSD+ R
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 167 HYDHV 171
YD +
Sbjct: 65 EYDQM 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEA-FKKVCKAFKCLSDDDS 164
+DYY ILGV ++ EIRKAY++L++K HPD+N+ EA FK++ +A++ L+D
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 165 RRHYDHVG 172
R YD G
Sbjct: 62 RAAYDQYG 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 104 KRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKN-KAPGSEEAFKKVCKAFKCLSDD 162
+ ++++Y++LGV ++ S EIR+A++KL+LK+HPDKN P + F K+ +A++ L D+
Sbjct: 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDE 77
Query: 163 DSRRHYDHVG 172
D R+ YD G
Sbjct: 78 DLRKKYDKYG 87
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 108 DYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRR 166
DYY ILGV R+ S +EI+KAY +L+ K HPD NK P ++E F ++ +A++ LSD+ R+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 167 HYDHVG 172
YD G
Sbjct: 68 QYDAYG 73
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEA-FKKVCKAFKCLSDDDSR 165
+DYY ILGV ++ EIRKAY++L++K HPD+N+ EA FK++ +A++ L+D R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 166 RHYDHVG 172
YD G
Sbjct: 63 AAYDQYG 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEA-FKKVCKAFKCLSDDDSR 165
+DYY ILGV ++ EIRKAY++L++K HPD+N+ EA FK++ +A++ L+D R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 166 RHYDHVG 172
YD G
Sbjct: 63 AAYDQYG 69
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKN-KAPGSEEAFKKVCKAFKCLSDDDSR 165
+++Y++LGV ++ S EIR+A++KL+LK+HPDKN P + F K+ +A++ L D+D R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 166 RHYDHVG 172
+ YD G
Sbjct: 62 KKYDKYG 68
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 108 DYYAILGVERSCSVEEIRKAYRKLSLKVHPDKN--KAPGSEEAFKKVCKAFKCLSDDDSR 165
+YY +LGV+ S S E+I+KAYRKL+L+ HPDKN +E+ FK V +A++ LSD R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 166 RHYDHVG 172
YD G
Sbjct: 70 SLYDRAG 76
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 108 DYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEA---FKKVCKAFKCLSDDDS 164
DYY +L V R S E I+KAYRKL+LK HPDKN EEA FK+V +A++ LSD
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE-NKEEAERRFKQVAEAYEVLSDAKK 68
Query: 165 RRHYDHVG 172
R YD G
Sbjct: 69 RDIYDRYG 76
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 105 RNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDS 164
+ YY +LGV+ + + EE++KAYRKL+LK HPDKN P E FK++ +A++ LSD
Sbjct: 4 KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKK 61
Query: 165 RRHYDHVG 172
R YD G
Sbjct: 62 RELYDKGG 69
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 110 YAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYD 169
Y +LGV S + +E++K YRK +LK HPD K G E FK++ +AF+ L+D R YD
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKREIYD 68
Query: 170 HVGL 173
GL
Sbjct: 69 QYGL 72
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 109 YYAILGVERSCSVEEIRKAYRKLSLKVHPDKN--KAPGSEEAFKKVCKAFKCLSDDDSRR 166
YY IL V RS S ++I+KAYR+ +L+ HPDKN +E+ FK+V +A++ LSD R
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 167 HYDHVG 172
YD G
Sbjct: 64 IYDRYG 69
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 110 YAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHY 168
Y +LG++++ + ++I+K+YRKL+LK HPDKN P + + FK++ A L+D R Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 169 DHVG 172
D G
Sbjct: 80 DKYG 83
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKN-KAPGSEEAFKKVCKAFKCLSDDDS 164
+DYY +LG + SVE+I ++ +L+ HPDK+ + P + E F+K+ KA + L++++S
Sbjct: 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEES 78
Query: 165 RRHYDH 170
R YDH
Sbjct: 79 RARYDH 84
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 90 RSYTEEHVELIRQIKRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPD----KNKAPGS 145
R E+ L++Q ++ +DYY ILGV+R+ +EI KAYRKL+L+ HPD + + +
Sbjct: 366 REGLEKAQRLLKQSQK-RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424
Query: 146 EEAFKKVCKAFKCLSDDDSRRHYD 169
E+ F + A + LSD + R+ +D
Sbjct: 425 EKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 90 RSYTEEHVELIRQIKRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPD----KNKAPGS 145
R E+ L++Q ++ +DYY ILGV+R+ +EI KAYRKL+L+ HPD + + +
Sbjct: 366 REGLEKAQRLLKQSQK-RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424
Query: 146 EEAFKKVCKAFKCLSDDDSRRHYD 169
E+ F + A + LSD + R+ +D
Sbjct: 425 EKKFIDIAAAKEVLSDPEMRKKFD 448
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK----APGSEEAFKK---VCKAFKCL 159
KD+Y+ILG + S ++ ++++ Y+KL L HPDK A EE +K + +A+K L
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 160 SDDDSRRHYD 169
+++++R YD
Sbjct: 70 GNEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA---PGSEE----AFKKVCKAFKCL 159
KD+Y+ILG + S ++ ++++ Y+KL L HPDK A G+ E F ++ +A+K L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 160 SDDDSRRHYD 169
++++++ YD
Sbjct: 76 GNEETKKKYD 85
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 110 YAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPG-SEEAFKKVCKAFKCLSDDDSRRHY 168
Y +LGV + + +I+ AY + HPD+N + E F ++ +A+ L RR Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 169 DHVGLVDE 176
D L DE
Sbjct: 80 DRGLLSDE 87
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 110 YAILGVERS-CSVEEIRKAYRKLSLKVHPD--KNKAPG--SEEAFKKVCKAFKCLSDDDS 164
Y +L V R +++ KAYR L+ K HPD KNK +EE F+ + A++ L DD++
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 165 RRHYDH 170
+ +YD+
Sbjct: 78 KTNYDY 83
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 114
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 112 ILGVERSC--SVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYD 169
+LG+ERS ++ +RKAY K + HPDK G EE KK+ +K + D H
Sbjct: 13 LLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKYAHQP 69
Query: 170 HVG 172
G
Sbjct: 70 DFG 72
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 174
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 112 ILGVERSC--SVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYD 169
+LG+ERS ++ +RKAY K + HPDK G EE KK+ +K + D H
Sbjct: 16 LLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKYAHQP 72
Query: 170 HVG 172
G
Sbjct: 73 DFG 75
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 110 YAILGVERSCSVEEIRKAYRKLSLKVHPDK 139
+ +G+ + E+++K YRK L VHPDK
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDK 149
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 122 EEIRKAYRKLSLKVHPDKNKAPGSEEAFKKV 152
E+++K YRK L VHPDK E+ K +
Sbjct: 51 EQVKKVYRKAVLVVHPDKATGQPYEQYAKXI 81
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 130 KLSLKVHPDKNKAP---GSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQR 182
K +L VH DKN+ P G E F VC + + D + HV + + EH+ R
Sbjct: 150 KTNLSVHEDKNRVPYVKGCTERF--VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 130 KLSLKVHPDKNKAP---GSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQR 182
K +L VH DKN+ P G E F VC + + D + HV + + EH+ R
Sbjct: 150 KTNLSVHEDKNRVPYVKGCTERF--VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 130 KLSLKVHPDKNKAP---GSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQR 182
K +L VH DKN+ P G E F VC + + D + HV + + EH+ R
Sbjct: 150 KTNLSVHEDKNRVPYVKGCTERF--VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 113 LGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKV 152
+G+ + E+++K YRK L VHPDK E+ K +
Sbjct: 55 VGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMI 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,972,001
Number of Sequences: 62578
Number of extensions: 374145
Number of successful extensions: 807
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 37
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)