Query 047551
Match_columns 352
No_of_seqs 329 out of 2637
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.4E-27 3.1E-32 234.0 10.2 99 106-214 3-102 (371)
2 PF09320 DUF1977: Domain of un 99.9 3.9E-26 8.4E-31 189.4 7.7 90 258-351 2-107 (107)
3 KOG0713 Molecular chaperone (D 99.9 4E-24 8.7E-29 205.3 7.2 76 102-178 11-87 (336)
4 KOG0624 dsRNA-activated protei 99.9 4.4E-23 9.6E-28 198.6 13.9 124 4-174 337-465 (504)
5 KOG0712 Molecular chaperone (D 99.9 1.4E-22 3.1E-27 196.5 8.0 70 106-178 3-72 (337)
6 PRK14296 chaperone protein Dna 99.9 3.6E-22 7.7E-27 198.6 9.1 71 106-177 3-73 (372)
7 PRK14288 chaperone protein Dna 99.9 5.8E-22 1.3E-26 196.9 8.4 68 106-173 2-70 (369)
8 PRK14286 chaperone protein Dna 99.8 1.7E-21 3.8E-26 193.7 9.1 104 106-214 3-107 (372)
9 PRK14299 chaperone protein Dna 99.8 3.4E-21 7.4E-26 185.7 10.5 106 106-214 3-109 (291)
10 PRK14287 chaperone protein Dna 99.8 3.1E-21 6.7E-26 191.8 8.8 97 106-214 3-99 (371)
11 PRK14280 chaperone protein Dna 99.8 6E-21 1.3E-25 190.1 9.3 101 106-213 3-103 (376)
12 PRK14276 chaperone protein Dna 99.8 7.6E-21 1.6E-25 189.6 9.6 102 106-213 3-106 (380)
13 PRK14285 chaperone protein Dna 99.8 8.2E-21 1.8E-25 188.4 9.2 103 107-213 3-106 (365)
14 PRK14298 chaperone protein Dna 99.8 9.2E-21 2E-25 188.8 8.6 100 106-214 4-103 (377)
15 PRK14278 chaperone protein Dna 99.8 1.3E-20 2.9E-25 187.8 8.6 67 107-173 3-69 (378)
16 PTZ00037 DnaJ_C chaperone prot 99.8 1.2E-20 2.6E-25 190.2 7.5 88 106-214 27-114 (421)
17 PRK14297 chaperone protein Dna 99.8 2E-20 4.3E-25 186.6 8.6 102 106-213 3-106 (380)
18 PRK14277 chaperone protein Dna 99.8 2.6E-20 5.7E-25 186.1 9.2 71 106-177 4-75 (386)
19 PRK14294 chaperone protein Dna 99.8 2.5E-20 5.4E-25 185.1 8.3 97 106-212 3-101 (366)
20 PRK14282 chaperone protein Dna 99.8 2.7E-20 5.9E-25 185.0 8.3 68 106-173 3-72 (369)
21 PRK14291 chaperone protein Dna 99.8 5E-20 1.1E-24 183.8 10.1 71 106-177 2-72 (382)
22 PRK14301 chaperone protein Dna 99.8 1.3E-19 2.7E-24 180.4 8.6 71 106-177 3-74 (373)
23 PRK14292 chaperone protein Dna 99.8 1.5E-19 3.3E-24 179.7 9.1 97 107-214 2-98 (371)
24 TIGR02349 DnaJ_bact chaperone 99.8 1.7E-19 3.7E-24 178.2 9.1 101 108-214 1-102 (354)
25 PRK14283 chaperone protein Dna 99.8 1.2E-19 2.7E-24 180.8 7.5 68 106-173 4-71 (378)
26 PRK14281 chaperone protein Dna 99.8 2.8E-19 6E-24 179.3 9.2 70 107-177 3-73 (397)
27 PRK14284 chaperone protein Dna 99.8 2.3E-19 4.9E-24 179.6 7.8 67 107-173 1-68 (391)
28 PRK14290 chaperone protein Dna 99.8 4.3E-19 9.4E-24 176.1 9.3 98 107-213 3-102 (365)
29 PRK10767 chaperone protein Dna 99.8 3.6E-19 7.8E-24 177.1 8.6 71 106-177 3-74 (371)
30 PRK14279 chaperone protein Dna 99.8 3.1E-19 6.8E-24 178.7 5.7 68 106-173 8-76 (392)
31 PRK14295 chaperone protein Dna 99.8 7.8E-19 1.7E-23 175.7 8.5 68 106-173 8-80 (389)
32 PRK14300 chaperone protein Dna 99.8 9.7E-19 2.1E-23 174.1 8.6 70 107-177 3-72 (372)
33 PRK14293 chaperone protein Dna 99.8 1.3E-18 2.8E-23 173.3 8.9 67 107-173 3-69 (374)
34 PRK10266 curved DNA-binding pr 99.8 1.7E-18 3.7E-23 168.1 9.1 67 107-173 4-70 (306)
35 PRK14289 chaperone protein Dna 99.7 2.2E-18 4.8E-23 172.3 8.4 68 106-173 4-72 (386)
36 KOG0550 Molecular chaperone (D 99.7 5.1E-18 1.1E-22 166.8 10.6 166 10-210 289-461 (486)
37 PTZ00341 Ring-infected erythro 99.7 4.4E-18 9.6E-23 181.2 8.3 69 105-173 571-639 (1136)
38 KOG0716 Molecular chaperone (D 99.7 3.6E-18 7.8E-23 159.9 5.3 68 106-173 30-98 (279)
39 KOG0715 Molecular chaperone (D 99.7 6.8E-18 1.5E-22 162.5 7.0 87 107-213 43-129 (288)
40 KOG0691 Molecular chaperone (D 99.7 9.2E-18 2E-22 161.2 6.0 90 106-214 4-94 (296)
41 KOG0719 Molecular chaperone (D 99.7 1.1E-17 2.3E-22 153.5 5.8 89 106-212 13-104 (264)
42 PF00226 DnaJ: DnaJ domain; I 99.7 1.3E-17 2.8E-22 125.0 4.2 62 108-169 1-64 (64)
43 KOG0717 Molecular chaperone (D 99.7 1.9E-17 4.1E-22 164.2 5.4 68 106-173 7-76 (508)
44 KOG0718 Molecular chaperone (D 99.7 5.9E-17 1.3E-21 160.8 5.2 72 106-178 8-83 (546)
45 PHA03102 Small T antigen; Revi 99.6 3E-16 6.6E-21 137.6 7.3 85 107-214 5-91 (153)
46 KOG0721 Molecular chaperone (D 99.6 1.5E-15 3.2E-20 138.3 6.9 73 105-177 97-170 (230)
47 smart00271 DnaJ DnaJ molecular 99.6 1.2E-15 2.5E-20 112.6 5.0 57 107-163 1-59 (60)
48 TIGR03835 termin_org_DnaJ term 99.6 1.8E-15 3.9E-20 158.4 8.1 67 107-173 2-68 (871)
49 cd06257 DnaJ DnaJ domain or J- 99.6 3E-15 6.5E-20 108.4 5.4 54 108-161 1-55 (55)
50 KOG0720 Molecular chaperone (D 99.5 6.3E-15 1.4E-19 146.5 6.2 71 102-172 230-300 (490)
51 KOG0714 Molecular chaperone (D 99.5 1.5E-14 3.3E-19 136.0 8.1 104 106-214 2-107 (306)
52 COG2214 CbpA DnaJ-class molecu 99.5 9.6E-15 2.1E-19 131.1 6.0 67 105-171 4-72 (237)
53 PRK05014 hscB co-chaperone Hsc 99.4 7.6E-13 1.6E-17 118.6 6.5 65 107-171 1-73 (171)
54 PRK01356 hscB co-chaperone Hsc 99.3 9.1E-13 2E-17 117.5 5.7 66 107-172 2-73 (166)
55 KOG0722 Molecular chaperone (D 99.3 6.3E-13 1.4E-17 123.7 3.3 69 105-173 31-99 (329)
56 PRK00294 hscB co-chaperone Hsc 99.3 4.4E-12 9.5E-17 113.8 6.6 68 105-172 2-77 (173)
57 PRK03578 hscB co-chaperone Hsc 99.3 5.3E-12 1.1E-16 113.6 6.1 65 106-170 5-77 (176)
58 PTZ00100 DnaJ chaperone protei 99.2 1.2E-11 2.6E-16 103.7 5.3 51 107-160 65-115 (116)
59 PHA02624 large T antigen; Prov 99.2 2.7E-11 5.9E-16 125.9 8.1 61 106-169 10-72 (647)
60 PRK09430 djlA Dna-J like membr 99.1 4.7E-11 1E-15 114.1 5.1 56 106-161 199-262 (267)
61 COG5407 SEC63 Preprotein trans 99.1 8.3E-11 1.8E-15 117.0 4.0 74 105-178 96-175 (610)
62 KOG1150 Predicted molecular ch 99.0 4.5E-10 9.7E-15 101.5 5.2 62 106-167 52-115 (250)
63 PRK01773 hscB co-chaperone Hsc 98.8 5.5E-09 1.2E-13 93.9 6.5 65 107-171 2-74 (173)
64 TIGR00714 hscB Fe-S protein as 98.8 7.9E-09 1.7E-13 91.5 5.7 54 119-172 3-62 (157)
65 COG5269 ZUO1 Ribosome-associat 98.8 1.2E-08 2.7E-13 96.1 6.2 69 105-173 41-115 (379)
66 KOG1789 Endocytosis protein RM 98.1 3.4E-06 7.4E-11 91.4 5.0 54 107-162 1281-1338(2235)
67 KOG0568 Molecular chaperone (D 98.0 5.8E-06 1.3E-10 76.7 4.8 57 106-162 46-103 (342)
68 KOG0723 Molecular chaperone (D 97.7 5E-05 1.1E-09 62.5 5.1 49 111-162 60-108 (112)
69 KOG0714 Molecular chaperone (D 97.6 6.1E-07 1.3E-11 84.3 -8.5 288 5-327 2-305 (306)
70 KOG3192 Mitochondrial J-type c 96.4 0.0031 6.7E-08 55.5 3.4 68 104-171 5-80 (168)
71 PF07719 TPR_2: Tetratricopept 96.4 0.01 2.2E-07 37.7 5.1 34 8-41 1-34 (34)
72 COG1076 DjlA DnaJ-domain-conta 96.1 0.0047 1E-07 55.5 3.3 56 103-158 109-172 (174)
73 PF00515 TPR_1: Tetratricopept 96.1 0.017 3.6E-07 37.0 5.0 33 8-40 1-33 (34)
74 KOG0431 Auxilin-like protein a 95.7 0.011 2.3E-07 60.9 4.2 40 118-157 399-446 (453)
75 PF13428 TPR_14: Tetratricopep 95.4 0.036 7.7E-07 38.0 4.6 32 11-42 4-35 (44)
76 PF13181 TPR_8: Tetratricopept 94.4 0.089 1.9E-06 33.4 4.3 33 8-40 1-33 (34)
77 PF14853 Fis1_TPR_C: Fis1 C-te 94.3 0.11 2.5E-06 37.7 5.2 42 11-52 4-46 (53)
78 PF13414 TPR_11: TPR repeat; P 94.2 0.074 1.6E-06 39.1 4.1 36 7-42 2-37 (69)
79 PF03656 Pam16: Pam16; InterP 93.2 0.16 3.5E-06 43.6 4.9 51 110-163 61-111 (127)
80 COG1076 DjlA DnaJ-domain-conta 92.7 0.071 1.5E-06 47.9 2.2 64 109-172 3-74 (174)
81 PF13414 TPR_11: TPR repeat; P 92.4 0.11 2.4E-06 38.2 2.5 36 4-39 33-69 (69)
82 PF14559 TPR_19: Tetratricopep 91.5 0.2 4.2E-06 36.6 3.0 38 11-48 28-66 (68)
83 PF13176 TPR_7: Tetratricopept 91.4 0.39 8.5E-06 31.4 4.1 30 11-40 2-31 (36)
84 PF13174 TPR_6: Tetratricopept 90.6 0.47 1E-05 29.4 3.8 31 11-41 3-33 (33)
85 TIGR03504 FimV_Cterm FimV C-te 90.5 0.36 7.7E-06 33.8 3.3 26 12-37 3-28 (44)
86 smart00028 TPR Tetratricopepti 90.3 0.56 1.2E-05 27.1 3.9 30 11-40 4-33 (34)
87 KOG0553 TPR repeat-containing 90.0 0.48 1E-05 46.1 4.9 41 4-44 77-117 (304)
88 PF13432 TPR_16: Tetratricopep 89.7 0.53 1.1E-05 34.1 3.9 38 13-50 2-40 (65)
89 PF13432 TPR_16: Tetratricopep 89.2 0.79 1.7E-05 33.2 4.6 35 7-41 30-64 (65)
90 PF14559 TPR_19: Tetratricopep 85.9 1.2 2.5E-05 32.4 3.8 33 18-50 1-34 (68)
91 PF14863 Alkyl_sulf_dimr: Alky 84.8 2.5 5.4E-05 36.9 5.9 42 8-49 70-112 (141)
92 PF13371 TPR_9: Tetratricopept 84.5 1.9 4.1E-05 31.7 4.5 24 17-40 4-27 (73)
93 PF13374 TPR_10: Tetratricopep 81.8 3.7 8E-05 26.5 4.6 32 9-40 3-34 (42)
94 PRK10370 formate-dependent nit 81.6 13 0.00028 33.7 9.6 39 4-42 69-107 (198)
95 KOG0624 dsRNA-activated protei 80.8 8.5 0.00018 38.8 8.4 39 3-41 33-71 (504)
96 PF13371 TPR_9: Tetratricopept 80.0 3.3 7.1E-05 30.4 4.3 39 6-44 27-65 (73)
97 cd02679 MIT_spastin MIT: domai 79.6 3.5 7.5E-05 32.5 4.4 34 4-37 4-37 (79)
98 PF13446 RPT: A repeated domai 78.6 2.3 4.9E-05 31.4 2.9 25 109-133 7-31 (62)
99 PF07219 HemY_N: HemY protein 77.6 8.3 0.00018 31.7 6.3 45 5-49 56-100 (108)
100 KOG3824 Huntingtin interacting 77.0 6.1 0.00013 39.2 6.1 40 3-42 111-150 (472)
101 PF04212 MIT: MIT (microtubule 76.9 6.3 0.00014 29.5 5.0 32 6-37 3-34 (69)
102 KOG0543 FKBP-type peptidyl-pro 76.9 5.6 0.00012 40.4 6.0 40 11-50 294-334 (397)
103 PLN03088 SGT1, suppressor of 76.7 5 0.00011 39.9 5.7 34 9-42 3-36 (356)
104 COG3063 PilF Tfp pilus assembl 76.6 6.4 0.00014 37.4 5.9 45 4-48 30-76 (250)
105 TIGR02552 LcrH_SycD type III s 76.2 6.3 0.00014 32.3 5.3 28 13-40 56-83 (135)
106 KOG0724 Zuotin and related mol 76.0 2.2 4.9E-05 41.8 3.0 53 119-171 4-61 (335)
107 cd00189 TPR Tetratricopeptide 75.6 4.7 0.0001 28.6 4.0 32 11-42 3-34 (100)
108 TIGR02552 LcrH_SycD type III s 74.5 11 0.00023 30.9 6.3 39 4-42 13-51 (135)
109 PLN03098 LPA1 LOW PSII ACCUMUL 72.6 18 0.00038 37.5 8.4 39 4-42 71-109 (453)
110 PF03704 BTAD: Bacterial trans 72.2 11 0.00023 31.8 5.9 43 11-53 65-109 (146)
111 PF02064 MAS20: MAS20 protein 71.6 15 0.00032 31.3 6.4 41 10-52 65-105 (121)
112 PLN03088 SGT1, suppressor of 71.5 7.9 0.00017 38.4 5.6 39 12-50 74-113 (356)
113 KOG4234 TPR repeat-containing 69.6 9.9 0.00022 35.7 5.3 39 4-42 91-129 (271)
114 PRK05685 fliS flagellar protei 69.2 9.4 0.0002 32.7 4.9 33 6-38 33-65 (132)
115 PF13525 YfiO: Outer membrane 68.8 16 0.00034 33.1 6.6 45 7-51 4-50 (203)
116 PF13424 TPR_12: Tetratricopep 68.5 12 0.00027 27.8 4.9 32 7-38 4-35 (78)
117 KOG0547 Translocase of outer m 68.1 7.2 0.00016 40.8 4.5 37 6-42 113-149 (606)
118 PF13424 TPR_12: Tetratricopep 67.6 7.4 0.00016 29.0 3.5 31 8-38 46-76 (78)
119 PF14561 TPR_20: Tetratricopep 67.6 19 0.00042 28.7 6.1 51 4-54 18-72 (90)
120 COG1516 FliS Flagellin-specifi 67.5 10 0.00022 32.8 4.7 34 6-39 29-62 (132)
121 TIGR00990 3a0801s09 mitochondr 66.1 13 0.00029 39.3 6.3 36 7-42 126-161 (615)
122 KOG0543 FKBP-type peptidyl-pro 66.1 13 0.00028 37.7 5.8 40 12-52 261-300 (397)
123 PF11817 Foie-gras_1: Foie gra 65.7 10 0.00022 35.7 4.7 35 8-42 178-212 (247)
124 KOG0553 TPR repeat-containing 64.9 14 0.00029 36.3 5.5 42 11-52 152-194 (304)
125 PRK10370 formate-dependent nit 64.8 15 0.00032 33.3 5.6 16 25-40 127-142 (198)
126 TIGR00208 fliS flagellar biosy 63.9 14 0.0003 31.3 4.8 33 6-38 29-61 (124)
127 TIGR02795 tol_pal_ybgF tol-pal 63.3 12 0.00025 29.4 4.1 34 9-42 3-36 (119)
128 PF02561 FliS: Flagellar prote 63.2 12 0.00026 31.3 4.3 32 6-37 27-58 (122)
129 KOG4234 TPR repeat-containing 62.5 26 0.00056 33.0 6.6 41 11-52 137-177 (271)
130 TIGR02795 tol_pal_ybgF tol-pal 61.8 17 0.00036 28.5 4.8 32 11-42 42-73 (119)
131 PF10516 SHNi-TPR: SHNi-TPR; 61.7 14 0.00029 25.0 3.5 29 10-38 3-31 (38)
132 PRK15359 type III secretion sy 61.7 17 0.00036 31.1 5.0 35 8-42 58-92 (144)
133 PF13512 TPR_18: Tetratricopep 61.5 14 0.00029 32.4 4.4 31 12-42 51-81 (142)
134 PF14346 DUF4398: Domain of un 60.1 19 0.00042 29.1 4.9 32 6-37 43-74 (103)
135 PRK15359 type III secretion sy 59.8 20 0.00043 30.6 5.2 32 11-42 27-58 (144)
136 PF13429 TPR_15: Tetratricopep 59.7 11 0.00024 35.4 3.9 37 6-42 144-180 (280)
137 PRK02603 photosystem I assembl 59.2 27 0.00059 30.4 6.1 30 11-40 75-104 (172)
138 cd02681 MIT_calpain7_1 MIT: do 59.1 19 0.00041 28.1 4.4 33 6-38 4-36 (76)
139 PF12895 Apc3: Anaphase-promot 58.6 9.8 0.00021 29.0 2.8 43 7-50 24-67 (84)
140 COG3898 Uncharacterized membra 58.2 21 0.00046 36.6 5.6 51 2-54 325-375 (531)
141 smart00745 MIT Microtubule Int 57.7 24 0.00053 26.7 4.8 34 4-37 4-37 (77)
142 cd00189 TPR Tetratricopeptide 57.6 15 0.00032 25.9 3.5 30 10-39 36-65 (100)
143 cd02682 MIT_AAA_Arch MIT: doma 56.8 26 0.00056 27.4 4.8 37 6-42 4-47 (75)
144 cd02684 MIT_2 MIT: domain cont 56.2 23 0.00049 27.4 4.4 35 4-38 2-36 (75)
145 PRK10866 outer membrane biogen 55.9 21 0.00045 33.6 5.0 34 9-42 33-66 (243)
146 PRK15174 Vi polysaccharide exp 55.0 1.1E+02 0.0024 33.0 11.0 44 120-165 367-410 (656)
147 PRK11189 lipoprotein NlpI; Pro 54.6 32 0.0007 33.0 6.2 36 10-45 238-273 (296)
148 TIGR00985 3a0801s04tom mitocho 54.5 39 0.00085 29.8 6.1 41 10-52 92-133 (148)
149 cd02683 MIT_1 MIT: domain cont 54.3 23 0.00051 27.5 4.2 32 6-37 4-35 (77)
150 PRK10747 putative protoheme IX 52.6 36 0.00078 34.1 6.4 42 2-43 97-153 (398)
151 TIGR02521 type_IV_pilW type IV 52.3 44 0.00095 28.7 6.2 36 7-42 30-65 (234)
152 PF09976 TPR_21: Tetratricopep 51.9 37 0.0008 28.7 5.5 35 9-43 49-83 (145)
153 PHA02537 M terminase endonucle 51.8 34 0.00074 32.3 5.7 34 20-53 190-223 (230)
154 cd02656 MIT MIT: domain contai 51.7 30 0.00065 26.2 4.5 32 6-37 4-35 (75)
155 PF07721 TPR_4: Tetratricopept 50.9 26 0.00056 21.0 3.2 22 11-32 4-25 (26)
156 cd02680 MIT_calpain7_2 MIT: do 50.7 29 0.00063 27.0 4.2 36 5-40 3-38 (75)
157 PF06552 TOM20_plant: Plant sp 50.6 46 0.00099 30.5 6.1 40 3-42 66-114 (186)
158 PRK10747 putative protoheme IX 50.3 24 0.00051 35.4 4.7 44 8-51 328-371 (398)
159 KOG0548 Molecular co-chaperone 49.9 94 0.002 32.9 8.9 37 6-42 356-392 (539)
160 PF10938 YfdX: YfdX protein; 49.8 25 0.00054 31.0 4.2 34 7-40 1-34 (155)
161 CHL00033 ycf3 photosystem I as 48.6 54 0.0012 28.2 6.2 36 6-41 33-68 (168)
162 PRK10866 outer membrane biogen 48.0 53 0.0012 30.8 6.4 34 11-44 72-106 (243)
163 cd02678 MIT_VPS4 MIT: domain c 46.6 40 0.00086 25.7 4.4 32 6-37 4-35 (75)
164 PRK02603 photosystem I assembl 46.3 38 0.00083 29.4 4.9 37 6-42 33-69 (172)
165 cd02677 MIT_SNX15 MIT: domain 46.0 34 0.00075 26.4 4.0 33 6-38 4-36 (75)
166 TIGR03302 OM_YfiO outer membra 45.6 46 0.001 30.0 5.5 35 8-42 33-67 (235)
167 PF13512 TPR_18: Tetratricopep 45.0 77 0.0017 27.7 6.4 44 9-52 11-56 (142)
168 COG4235 Cytochrome c biogenesi 44.8 37 0.0008 33.2 4.8 49 4-53 152-200 (287)
169 CHL00033 ycf3 photosystem I as 44.6 52 0.0011 28.4 5.4 33 10-42 74-106 (168)
170 COG5552 Uncharacterized conser 44.4 68 0.0015 25.1 5.2 47 106-152 2-48 (88)
171 PF11833 DUF3353: Protein of u 43.9 42 0.0009 30.8 4.8 38 116-160 1-38 (194)
172 PRK11788 tetratricopeptide rep 43.9 55 0.0012 31.7 6.1 30 13-42 254-283 (389)
173 TIGR03302 OM_YfiO outer membra 43.3 44 0.00095 30.2 5.0 32 11-42 73-104 (235)
174 KOG0376 Serine-threonine phosp 42.9 23 0.00049 36.8 3.2 35 8-42 4-38 (476)
175 PRK15179 Vi polysaccharide bio 41.9 2.3E+02 0.0049 31.1 10.8 35 8-42 86-120 (694)
176 PF14687 DUF4460: Domain of un 41.3 39 0.00084 28.3 3.8 45 117-161 4-53 (112)
177 PRK10153 DNA-binding transcrip 40.7 56 0.0012 34.4 5.8 35 15-49 427-461 (517)
178 TIGR00823 EIIA-LAC phosphotran 39.9 48 0.001 27.1 4.1 36 4-39 13-48 (99)
179 PRK11189 lipoprotein NlpI; Pro 39.8 55 0.0012 31.4 5.2 32 10-41 66-97 (296)
180 PRK09591 celC cellobiose phosp 39.7 62 0.0013 26.7 4.8 35 5-39 17-51 (104)
181 COG5010 TadD Flp pilus assembl 39.5 62 0.0013 31.1 5.3 41 13-53 105-147 (257)
182 PF04781 DUF627: Protein of un 39.0 55 0.0012 27.5 4.4 30 13-42 1-30 (111)
183 cd00215 PTS_IIA_lac PTS_IIA, P 38.9 66 0.0014 26.2 4.8 36 4-39 11-46 (97)
184 TIGR00540 hemY_coli hemY prote 38.7 77 0.0017 31.8 6.3 43 6-48 82-124 (409)
185 PRK11447 cellulose synthase su 38.4 81 0.0018 36.3 7.1 30 13-42 608-637 (1157)
186 PF04505 Dispanin: Interferon- 38.2 36 0.00079 26.7 3.1 24 15-38 44-67 (82)
187 TIGR02521 type_IV_pilW type IV 38.2 73 0.0016 27.2 5.4 31 11-41 138-168 (234)
188 KOG1173 Anaphase-promoting com 37.2 51 0.0011 35.1 4.7 38 13-50 494-532 (611)
189 COG2956 Predicted N-acetylgluc 37.1 75 0.0016 31.9 5.6 48 4-51 176-224 (389)
190 PRK10803 tol-pal system protei 36.6 73 0.0016 30.4 5.5 32 10-41 144-176 (263)
191 PF02255 PTS_IIA: PTS system, 36.6 79 0.0017 25.6 4.9 35 4-38 10-44 (96)
192 TIGR00990 3a0801s09 mitochondr 36.3 44 0.00095 35.4 4.3 27 14-40 405-431 (615)
193 PRK12370 invasion protein regu 36.2 62 0.0014 34.0 5.4 32 11-42 341-372 (553)
194 TIGR02917 PEP_TPR_lipo putativ 36.1 75 0.0016 33.6 6.0 34 9-42 23-56 (899)
195 PF12862 Apc5: Anaphase-promot 35.9 58 0.0013 25.7 4.0 35 8-42 41-75 (94)
196 PRK12370 invasion protein regu 35.3 56 0.0012 34.3 4.9 23 20-42 316-338 (553)
197 PF06692 MNSV_P7B: Melon necro 34.5 59 0.0013 24.0 3.3 26 243-268 14-39 (61)
198 PF07720 TPR_3: Tetratricopept 34.0 1.2E+02 0.0027 19.9 4.6 31 10-40 3-35 (36)
199 COG2015 Alkyl sulfatase and re 34.0 70 0.0015 33.7 5.0 46 8-53 452-499 (655)
200 KOG3364 Membrane protein invol 33.5 77 0.0017 27.9 4.5 41 12-52 75-116 (149)
201 PF12895 Apc3: Anaphase-promot 32.7 54 0.0012 24.7 3.3 22 13-34 63-84 (84)
202 COG3947 Response regulator con 31.5 82 0.0018 31.2 4.8 41 13-53 284-326 (361)
203 KOG1127 TPR repeat-containing 31.4 51 0.0011 37.5 3.8 42 8-49 2-44 (1238)
204 KOG3442 Uncharacterized conser 31.1 71 0.0015 27.5 3.8 50 110-162 62-111 (132)
205 PF13763 DUF4167: Domain of un 31.0 91 0.002 24.7 4.2 28 8-35 39-66 (80)
206 smart00386 HAT HAT (Half-A-TPR 30.9 55 0.0012 19.3 2.5 20 22-41 1-20 (33)
207 PRK10153 DNA-binding transcrip 30.5 1.2E+02 0.0025 32.1 6.2 46 6-51 337-386 (517)
208 PRK10049 pgaA outer membrane p 30.5 1.4E+02 0.003 32.8 7.0 27 14-40 365-391 (765)
209 PF13525 YfiO: Outer membrane 30.2 1.3E+02 0.0029 27.0 5.9 37 6-42 139-175 (203)
210 PRK15363 pathogenicity island 30.2 1.2E+02 0.0026 27.0 5.3 33 9-41 36-68 (157)
211 PF13429 TPR_15: Tetratricopep 30.1 90 0.002 29.1 4.9 30 13-42 219-248 (280)
212 KOG2076 RNA polymerase III tra 30.1 1.2E+02 0.0025 34.1 6.2 44 7-50 138-182 (895)
213 PF14938 SNAP: Soluble NSF att 30.1 81 0.0017 30.0 4.6 38 4-41 70-107 (282)
214 PRK10049 pgaA outer membrane p 29.8 1.4E+02 0.003 32.8 6.9 28 14-41 399-426 (765)
215 KOG0548 Molecular co-chaperone 29.8 87 0.0019 33.1 5.0 48 4-52 388-435 (539)
216 KOG1586 Protein required for f 29.7 72 0.0016 30.7 4.0 40 3-42 68-107 (288)
217 COG2178 Predicted RNA-binding 29.6 80 0.0017 29.3 4.2 35 3-37 17-58 (204)
218 PF12273 RCR: Chitin synthesis 29.2 32 0.00069 29.1 1.5 7 286-292 74-80 (130)
219 PF15469 Sec5: Exocyst complex 29.1 49 0.0011 29.4 2.8 27 15-41 93-119 (182)
220 KOG1126 DNA-binding cell divis 28.3 37 0.00079 36.6 2.0 46 2-47 415-461 (638)
221 PRK09782 bacteriophage N4 rece 28.1 1.2E+02 0.0027 34.6 6.3 21 20-40 588-608 (987)
222 smart00685 DM14 Repeats in fly 28.1 90 0.0019 23.3 3.5 31 10-40 10-40 (59)
223 PF12793 SgrR_N: Sugar transpo 27.8 98 0.0021 25.9 4.2 23 10-32 72-94 (115)
224 PRK10454 PTS system N,N'-diace 27.8 96 0.0021 26.2 4.1 35 4-38 27-61 (115)
225 TIGR02508 type_III_yscG type I 27.2 1E+02 0.0022 25.8 4.0 43 4-51 36-78 (115)
226 COG4105 ComL DNA uptake lipopr 27.1 95 0.0021 29.8 4.4 32 11-42 74-105 (254)
227 PRK11788 tetratricopeptide rep 26.7 1.1E+02 0.0023 29.7 5.0 32 11-42 183-214 (389)
228 COG4105 ComL DNA uptake lipopr 26.4 1.9E+02 0.0041 27.8 6.3 44 7-50 33-78 (254)
229 PRK11906 transcriptional regul 26.4 1.1E+02 0.0023 31.9 5.0 46 6-51 370-415 (458)
230 COG5010 TadD Flp pilus assembl 26.1 75 0.0016 30.5 3.5 36 7-42 133-168 (257)
231 KOG4056 Translocase of outer m 26.1 1.7E+02 0.0037 25.6 5.4 39 11-51 84-122 (143)
232 smart00671 SEL1 Sel1-like repe 25.9 1.3E+02 0.0028 18.4 3.7 27 11-37 4-34 (36)
233 COG3063 PilF Tfp pilus assembl 25.1 97 0.0021 29.6 4.0 29 14-42 145-173 (250)
234 PRK10803 tol-pal system protei 24.9 6.1E+02 0.013 24.1 11.3 26 15-40 187-212 (263)
235 PRK09782 bacteriophage N4 rece 24.5 88 0.0019 35.7 4.3 39 12-50 82-121 (987)
236 PF12569 NARP1: NMDA receptor- 24.5 1.3E+02 0.0028 31.8 5.3 41 12-53 198-238 (517)
237 cd00084 HMG-box High Mobility 24.2 1.3E+02 0.0029 21.1 3.9 43 125-171 12-54 (66)
238 PRK15174 Vi polysaccharide exp 24.2 1.2E+02 0.0026 32.8 5.1 32 11-42 113-144 (656)
239 TIGR00540 hemY_coli hemY prote 24.1 1.2E+02 0.0026 30.4 4.8 42 12-53 339-383 (409)
240 PF14938 SNAP: Soluble NSF att 23.7 71 0.0015 30.4 3.0 30 12-41 118-148 (282)
241 smart00668 CTLH C-terminal to 23.1 1.2E+02 0.0026 21.1 3.4 20 15-34 8-27 (58)
242 KOG2376 Signal recognition par 23.1 97 0.0021 33.3 4.0 30 8-37 175-204 (652)
243 PF08631 SPO22: Meiosis protei 22.8 1.3E+02 0.0027 28.7 4.5 31 8-38 35-66 (278)
244 PF10041 DUF2277: Uncharacteri 22.8 3.1E+02 0.0066 21.6 5.7 45 107-151 3-47 (78)
245 cd01388 SOX-TCF_HMG-box SOX-TC 22.0 1.5E+02 0.0033 22.0 4.0 42 126-171 14-55 (72)
246 PRK05886 yajC preprotein trans 21.9 57 0.0012 27.3 1.6 17 245-261 3-19 (109)
247 PRK10316 hypothetical protein; 21.8 1.5E+02 0.0032 27.7 4.4 36 7-42 53-88 (209)
248 PRK05585 yajC preprotein trans 21.8 58 0.0013 27.0 1.7 17 245-261 17-33 (106)
249 PRK14574 hmsH outer membrane p 21.8 2.1E+02 0.0046 32.1 6.5 29 14-42 108-136 (822)
250 cd01390 HMGB-UBF_HMG-box HMGB- 21.2 1.4E+02 0.0031 21.2 3.6 40 128-171 15-54 (66)
251 PRK11447 cellulose synthase su 21.0 1.8E+02 0.0039 33.5 6.0 30 13-42 466-495 (1157)
252 PF04733 Coatomer_E: Coatomer 20.5 1.5E+02 0.0033 28.6 4.5 32 11-42 204-235 (290)
253 COG1862 YajC Preprotein transl 20.3 70 0.0015 26.2 1.8 22 245-266 8-29 (97)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-27 Score=234.00 Aligned_cols=99 Identities=42% Similarity=0.703 Sum_probs=82.0
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHN 184 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 184 (352)
.+|||+||||+++||.+||||||||||++||||+|+ +++|+++|++|++||+|||||+||+.||++|. .++..+.
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~-~~~~~gg--- 78 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGH-AGFKAGG--- 78 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCc-cccccCC---
Confidence 689999999999999999999999999999999999 89999999999999999999999999999998 5543110
Q ss_pred CCCCCcCCCCCCCCCCCChHHHHHhhhCCC
Q 047551 185 VRPRRRRAQHDFFDDELDPDEIFRSFFGQQ 214 (352)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~pediF~~fFGg~ 214 (352)
.+ +.+.++ |+. ++.|||..||||+
T Consensus 79 --~g-g~g~~~-fgg--~~~DIF~~~FgGg 102 (371)
T COG0484 79 --FG-GFGFGG-FGG--DFGDIFEDFFGGG 102 (371)
T ss_pred --cC-CCCcCC-CCC--CHHHHHHHhhcCC
Confidence 00 001112 221 7899999999755
No 2
>PF09320 DUF1977: Domain of unknown function (DUF1977); InterPro: IPR015399 This C-terminal domain is functionally uncharacterised and predominantly found in Dnaj-like proteins.
Probab=99.93 E-value=3.9e-26 Score=189.44 Aligned_cols=90 Identities=33% Similarity=0.563 Sum_probs=83.0
Q ss_pred HHhcCCCCCCccccCCCCccceeeccCCCceeeccCCccccccCCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHH---
Q 047551 258 LAYLPYSEPDYSLHRNFNYQIPRTTEKHGIEFYVKSPASFDENFPHGSSARAVIEDNVIKDYRNLLWRYCHVELQKR--- 334 (352)
Q Consensus 258 ~~~~~~~~P~ysl~~~~~~~~~r~T~~~~v~yyV~~~~~f~~~~~~~~~~~~~lE~~Ve~~y~~~l~~~C~~e~~~~--- 334 (352)
++.|++++|+|||+++++|+++|+|++++|+|||++ +|..+| +++++++||++||.+||++|+++|++|++++
T Consensus 2 ~s~l~s~~P~yS~~~s~~y~~~R~T~~~~V~YYV~~--~f~~~y--~~~~l~~lE~~VE~~yv~~L~~~C~~E~~~r~~l 77 (107)
T PF09320_consen 2 LSSLFSSDPSYSFTPSSPYTVERTTPNLKVPYYVNP--DFVQKY--SSSKLRQLERQVENDYVQNLRNQCERERQYRERL 77 (107)
T ss_pred ccccCCCCCCeeecCCCCCceeeEcCCCCcceeECc--hhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677899999999999999999999999999998 999999 5678999999999999999999999998765
Q ss_pred -------------HHHhhCCCCCchhhhcC
Q 047551 335 -------------RWNKNLPTPHCNKLENL 351 (352)
Q Consensus 335 -------------~~a~~~~~psC~~L~~l 351 (352)
.||+.|++|||++|++|
T Consensus 78 ~~~a~~~~d~~~~~~A~~~~~psCd~L~~L 107 (107)
T PF09320_consen 78 IERARFYGDEEKLEKAQNMPMPSCDRLKKL 107 (107)
T ss_pred HHHHHHccCHHHHHHHHhCCCchHHHHhcC
Confidence 47889999999999986
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4e-24 Score=205.33 Aligned_cols=76 Identities=45% Similarity=0.833 Sum_probs=71.5
Q ss_pred HHhcCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhh
Q 047551 102 QIKRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFE 178 (352)
Q Consensus 102 ~~~~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~ 178 (352)
-+...+|||+||||+++|++.|||+||||||+++|||||+ +|.|.+.|++|+.||+|||||++|+.||.+|+ ++..
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE-egL~ 87 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE-EGLK 87 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH-hhhc
Confidence 4457899999999999999999999999999999999998 68999999999999999999999999999998 7665
No 4
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=4.4e-23 Score=198.63 Aligned_cols=124 Identities=32% Similarity=0.451 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHHHhcCCCCCCCCCCCcccccccccCCCcccccc
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAACEKLGVGDSGPNVSSADEKRLDDQRSKPGLEKL 82 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (352)
..|++.-.++.|+.+|-..+|+.|+..++||+.++|+.. +++-|...+++
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrl----------------------------- 387 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRL----------------------------- 387 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----------------------------
Confidence 357788889999999999999999999999999999865 67777666655
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCC----CcHHHHHHHHHHHHh
Q 047551 83 GEGLSGERSYTEEHVELIRQIKRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAP----GSEEAFKKVCKAFKC 158 (352)
Q Consensus 83 ~~~~~~~~~~t~~~~~~~~~~~~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~----~a~e~f~~I~~Ay~v 158 (352)
.+....+|||+||||.++|+..||.|||||+|.+||||..++. .|+.+|..|..|-+|
T Consensus 388 ------------------kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEV 449 (504)
T KOG0624|consen 388 ------------------KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEV 449 (504)
T ss_pred ------------------HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHh
Confidence 3344689999999999999999999999999999999988754 488999999999999
Q ss_pred cCchhhhhhhcccCCc
Q 047551 159 LSDDDSRRHYDHVGLV 174 (352)
Q Consensus 159 Lsd~~kR~~YD~~g~~ 174 (352)
||||++|+.||.+-++
T Consensus 450 Lsd~EkRrqFDnGeDP 465 (504)
T KOG0624|consen 450 LSDPEKRRQFDNGEDP 465 (504)
T ss_pred hcCHHHHhhccCCCCC
Confidence 9999999999987653
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-22 Score=196.46 Aligned_cols=70 Identities=49% Similarity=0.799 Sum_probs=65.8
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhh
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFE 178 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~ 178 (352)
...||+||||+++|+.+|||||||+||++||||||+ .+.++|++|+.||+|||||+||.+||++|+ ++..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~--~~~ekfkei~~AyevLsd~ekr~~yD~~g~-~~~~ 72 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNP--DAGEKFKEISQAYEVLSDPEKREIYDQYGE-EGLQ 72 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHhcCHHHHHHHHhhhh-hhhc
Confidence 578999999999999999999999999999999995 489999999999999999999999999998 6654
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=3.6e-22 Score=198.57 Aligned_cols=71 Identities=44% Similarity=0.795 Sum_probs=67.3
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchh
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEF 177 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~ 177 (352)
.+|||+||||+++|+.+|||+|||+||++||||+|+.+.|+++|++|++||+|||||+||+.||++|. .+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~-~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGH-AAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccc-hhh
Confidence 47999999999999999999999999999999999888899999999999999999999999999997 443
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=5.8e-22 Score=196.87 Aligned_cols=68 Identities=46% Similarity=0.750 Sum_probs=65.0
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+|||||+||+.||++|.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 479999999999999999999999999999999997 56789999999999999999999999999997
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.7e-21 Score=193.67 Aligned_cols=104 Identities=42% Similarity=0.631 Sum_probs=79.4
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHN 184 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 184 (352)
..|||+||||+++|+.+|||+|||+||++||||+|+ .+.|+++|++|++||+||+||.+|+.||++|. ++...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~-~g~~~~~--- 78 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK-AGVNAGA--- 78 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc-hhhcccc---
Confidence 469999999999999999999999999999999997 46789999999999999999999999999997 5443110
Q ss_pred CCCCCcCCCCCCCCCCCChHHHHHhhhCCC
Q 047551 185 VRPRRRRAQHDFFDDELDPDEIFRSFFGQQ 214 (352)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~pediF~~fFGg~ 214 (352)
.+ ...++..+|.....+++|+|..|||++
T Consensus 79 ~~-~~~~~~~~~~~~~~~~~d~f~~ffgg~ 107 (372)
T PRK14286 79 GG-FGQGAYTDFSDIFGDFGDIFGDFFGGG 107 (372)
T ss_pred CC-CCCCCcccccccccchhhHHHHhhCCC
Confidence 00 000111111100125679999999853
No 9
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=3.4e-21 Score=185.74 Aligned_cols=106 Identities=42% Similarity=0.662 Sum_probs=80.6
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNV 185 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 185 (352)
..|||+||||+++||.++||+|||+||++||||+|+.+.++++|+.|++||+|||||.+|+.||.+|. ++...+....
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~-~~~~~~~~~~- 80 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT-TAASAGWQGP- 80 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC-ccccccccCC-
Confidence 47999999999999999999999999999999999888899999999999999999999999999997 4322110000
Q ss_pred CCCCcCCCCCCCCC-CCChHHHHHhhhCCC
Q 047551 186 RPRRRRAQHDFFDD-ELDPDEIFRSFFGQQ 214 (352)
Q Consensus 186 ~~~~~~~~~~~~~~-~~~pediF~~fFGg~ 214 (352)
....++.++|-.. ..+++++|..||||.
T Consensus 81 -~~~~~~~~~~~~~~~~~~~d~f~~~fgg~ 109 (291)
T PRK14299 81 -PPGPPGGGDFSGFNVGDFSDFFQQLFGGR 109 (291)
T ss_pred -CCCCCCCCCccccCcCCHHHHHHHHhCCC
Confidence 0000111111111 135789999999863
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.1e-21 Score=191.83 Aligned_cols=97 Identities=44% Similarity=0.779 Sum_probs=78.9
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNV 185 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 185 (352)
..|||+||||+++|+.+|||+|||+||++||||+|+.+.|+++|+.|++||+||+||.+|+.||++|. ++...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~-~~~~~~~---- 77 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH-TDPNQGF---- 77 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC-ccccccc----
Confidence 46999999999999999999999999999999999888899999999999999999999999999997 4432100
Q ss_pred CCCCcCCCCCCCCCCCChHHHHHhhhCCC
Q 047551 186 RPRRRRAQHDFFDDELDPDEIFRSFFGQQ 214 (352)
Q Consensus 186 ~~~~~~~~~~~~~~~~~pediF~~fFGg~ 214 (352)
+ +++..+| . +++|+|..|||++
T Consensus 78 --~-~~~~~~f-~---~~~d~f~~~fgg~ 99 (371)
T PRK14287 78 --G-GGGAGDF-G---GFSDIFDMFFGGG 99 (371)
T ss_pred --C-CCCCccc-c---chHHHHHhhhccc
Confidence 0 0111122 1 2579999999853
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=6e-21 Score=190.08 Aligned_cols=101 Identities=44% Similarity=0.731 Sum_probs=79.5
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNV 185 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 185 (352)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+|||||.+|+.||.+|+ ++...+. +
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~-~~~~~~~-~-- 78 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGH-AGPNQGF-G-- 78 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCc-cccccCc-C--
Confidence 36999999999999999999999999999999999888899999999999999999999999999997 4433110 0
Q ss_pred CCCCcCCCCCCCCCCCChHHHHHhhhCC
Q 047551 186 RPRRRRAQHDFFDDELDPDEIFRSFFGQ 213 (352)
Q Consensus 186 ~~~~~~~~~~~~~~~~~pediF~~fFGg 213 (352)
..+.++.+| ...++++|+|..||||
T Consensus 79 --~~~~~~~~~-~~~~~~~d~f~~~fgg 103 (376)
T PRK14280 79 --GGGFGGGDF-GGGFGFEDIFSSFFGG 103 (376)
T ss_pred --CCCCCCCCc-cccccchhhHHHHhCC
Confidence 000000111 1112467999999975
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.6e-21 Score=189.59 Aligned_cols=102 Identities=42% Similarity=0.628 Sum_probs=79.7
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNV 185 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 185 (352)
..|||+||||+++|+.+|||+|||+||++||||+|+++.|+++|+.|++||+||+||.+|+.||++|+ ++...+. ..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~-~~~~~~~-~~- 79 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGA-AGANGGF-GG- 79 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC-ccccCCC-CC-
Confidence 46999999999999999999999999999999999988899999999999999999999999999997 5443110 00
Q ss_pred CCCCcCCCCCCC--CCCCChHHHHHhhhCC
Q 047551 186 RPRRRRAQHDFF--DDELDPDEIFRSFFGQ 213 (352)
Q Consensus 186 ~~~~~~~~~~~~--~~~~~pediF~~fFGg 213 (352)
..++.++|. ....+++|+|..||||
T Consensus 80 ---~~~~~~~~~~~~~~~~~~d~f~~~fgg 106 (380)
T PRK14276 80 ---GAGGFGGFDGSGGFGGFEDIFSSFFGG 106 (380)
T ss_pred ---CCCCCCCccccccccchhhHHHHHhCc
Confidence 000111110 0112467999999985
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=8.2e-21 Score=188.42 Aligned_cols=103 Identities=41% Similarity=0.637 Sum_probs=78.3
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNV 185 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 185 (352)
.|||+||||+++|+.+|||+|||+||++||||+|+ .+.|+++|++|++||+||+||.+|+.||.+|. .+...+. .
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~-~~~~~~~---~ 78 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH-TAFEGGG---G 78 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc-chhccCC---C
Confidence 69999999999999999999999999999999997 45688999999999999999999999999997 4432110 0
Q ss_pred CCCCcCCCCCCCCCCCChHHHHHhhhCC
Q 047551 186 RPRRRRAQHDFFDDELDPDEIFRSFFGQ 213 (352)
Q Consensus 186 ~~~~~~~~~~~~~~~~~pediF~~fFGg 213 (352)
.....++..+|.....+++|+|..|||+
T Consensus 79 ~~~~~~g~~~~~~~~~~~~d~f~~~fgg 106 (365)
T PRK14285 79 FEGFSGGFSGFSDIFEDFGDIFDSFFTG 106 (365)
T ss_pred ccccCCCccccccccccHHHHHHHhhcC
Confidence 0000011111111113467999999985
No 14
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9.2e-21 Score=188.80 Aligned_cols=100 Identities=43% Similarity=0.757 Sum_probs=78.8
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNV 185 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 185 (352)
..|||+||||+++|+.+|||+|||+||++||||+|+.+.++++|++|++||+||+||.+|+.||++|. ++...+ ..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~-~g~~~~-~~-- 79 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGH-AGIDNQ-YS-- 79 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCc-cccccc-cC--
Confidence 46999999999999999999999999999999999888899999999999999999999999999997 443311 00
Q ss_pred CCCCcCCCCCCCCCCCChHHHHHhhhCCC
Q 047551 186 RPRRRRAQHDFFDDELDPDEIFRSFFGQQ 214 (352)
Q Consensus 186 ~~~~~~~~~~~~~~~~~pediF~~fFGg~ 214 (352)
.....+..+| .++.|+|.+||||+
T Consensus 80 -~~~~~~~~~~----~~~~d~f~~~Fgg~ 103 (377)
T PRK14298 80 -AEDIFRGADF----GGFGDIFEMFFGGG 103 (377)
T ss_pred -cccccccCCc----CcchhhhHhhhcCC
Confidence 0000000111 12468999999853
No 15
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.3e-20 Score=187.76 Aligned_cols=67 Identities=45% Similarity=0.746 Sum_probs=65.1
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||+||+||.+|+.||.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 6999999999999999999999999999999999888899999999999999999999999999987
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.82 E-value=1.2e-20 Score=190.15 Aligned_cols=88 Identities=38% Similarity=0.743 Sum_probs=74.2
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNV 185 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 185 (352)
..|||+||||+++||.+|||+|||+||++||||||+ ..++|++|++||+|||||.||+.||.+|. .+...
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~---~~e~F~~i~~AYevLsD~~kR~~YD~~G~-~~~~~------ 96 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG---DPEKFKEISRAYEVLSDPEKRKIYDEYGE-EGLEG------ 96 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc---hHHHHHHHHHHHHHhccHHHHHHHhhhcc-hhccc------
Confidence 579999999999999999999999999999999985 36899999999999999999999999987 43320
Q ss_pred CCCCcCCCCCCCCCCCChHHHHHhhhCCC
Q 047551 186 RPRRRRAQHDFFDDELDPDEIFRSFFGQQ 214 (352)
Q Consensus 186 ~~~~~~~~~~~~~~~~~pediF~~fFGg~ 214 (352)
++ + ..++.++|..|||++
T Consensus 97 -----~~--~----~~d~~d~f~~~Fggg 114 (421)
T PTZ00037 97 -----GE--Q----PADASDLFDLIFGGG 114 (421)
T ss_pred -----CC--C----CcchhhhHHHhhccc
Confidence 00 0 134678999999753
No 17
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2e-20 Score=186.64 Aligned_cols=102 Identities=42% Similarity=0.724 Sum_probs=78.6
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHN 184 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 184 (352)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|+.|++||+||+||.+|+.||++|. .++..+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~-~~~~~~~--- 78 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT-ADFNGAG--- 78 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc-ccccccC---
Confidence 369999999999999999999999999999999997 45689999999999999999999999999997 4433110
Q ss_pred CCCCCcCCCCCC-CCCCCChHHHHHhhhCC
Q 047551 185 VRPRRRRAQHDF-FDDELDPDEIFRSFFGQ 213 (352)
Q Consensus 185 ~~~~~~~~~~~~-~~~~~~pediF~~fFGg 213 (352)
+ .+.++..+| +....+++|+|.+|||+
T Consensus 79 -~-~~~~~~~~~~~~~~~~~~d~f~~~fgg 106 (380)
T PRK14297 79 -G-FGSGGFGGFDFSDMGGFGDIFDSFFGG 106 (380)
T ss_pred -C-CCCCCCCCcCcccccchhHHHHHHhcc
Confidence 0 000111111 01112467999999985
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.6e-20 Score=186.07 Aligned_cols=71 Identities=48% Similarity=0.833 Sum_probs=66.2
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchh
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEF 177 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~ 177 (352)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+|||||.+|+.||.+|. ++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~-~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH-AAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc-ccc
Confidence 479999999999999999999999999999999997 46789999999999999999999999999997 444
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=2.5e-20 Score=185.06 Aligned_cols=97 Identities=43% Similarity=0.732 Sum_probs=77.5
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHN 184 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 184 (352)
..|||+||||+++|+.+|||+|||+||++||||+|+ .+.+++.|+.|++||+||+||.+|+.||++|+ +++..+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~-~g~~~~---- 77 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH-EGLSGT---- 77 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc-ccccCC----
Confidence 479999999999999999999999999999999997 46789999999999999999999999999997 544310
Q ss_pred CCCCCcCCCCCCCCCC-CChHHHHHhhhC
Q 047551 185 VRPRRRRAQHDFFDDE-LDPDEIFRSFFG 212 (352)
Q Consensus 185 ~~~~~~~~~~~~~~~~-~~pediF~~fFG 212 (352)
..++.++ |... .+..|+|..|||
T Consensus 78 ----~~~~~~~-~~~~~~~~~d~f~~~fg 101 (366)
T PRK14294 78 ----GFSGFSG-FDDIFSSFGDIFEDFFG 101 (366)
T ss_pred ----CCCCcCc-cccchhhhhhhHHHhhc
Confidence 0011111 1111 235689999998
No 20
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=2.7e-20 Score=184.95 Aligned_cols=68 Identities=43% Similarity=0.795 Sum_probs=64.3
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC--CCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA--PGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~--~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.|++.|++|++||+|||||.+|+.||.+|.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 4799999999999999999999999999999999963 5688999999999999999999999999987
No 21
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5e-20 Score=183.82 Aligned_cols=71 Identities=52% Similarity=0.898 Sum_probs=67.2
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchh
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEF 177 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~ 177 (352)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||+|||||.+|+.||.+|. .+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~-~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGH-AAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc-ccc
Confidence 47999999999999999999999999999999999888899999999999999999999999999997 443
No 22
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=180.45 Aligned_cols=71 Identities=45% Similarity=0.854 Sum_probs=65.7
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchh
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEF 177 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~ 177 (352)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|+.|++||+||+||.+|+.||.+|. ++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~-~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH-AGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc-ccc
Confidence 479999999999999999999999999999999997 45688999999999999999999999999997 443
No 23
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.5e-19 Score=179.69 Aligned_cols=97 Identities=41% Similarity=0.722 Sum_probs=78.9
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCCC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNVR 186 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~ 186 (352)
.|||+||||+++|+.++||+|||+||+++|||++..+.|+++|+.|++||+||+||.+|+.||.+|. .+.. . .
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~-~~~~--~--~-- 74 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGT-APGA--G--M-- 74 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCC-cccc--c--c--
Confidence 5899999999999999999999999999999999888899999999999999999999999999997 3311 0 0
Q ss_pred CCCcCCCCCCCCCCCChHHHHHhhhCCC
Q 047551 187 PRRRRAQHDFFDDELDPDEIFRSFFGQQ 214 (352)
Q Consensus 187 ~~~~~~~~~~~~~~~~pediF~~fFGg~ 214 (352)
...++.+++ .++++|+|..|||+.
T Consensus 75 -~~~~~~~~~---~~d~~d~f~~~fg~~ 98 (371)
T PRK14292 75 -PGGDPFGGM---GFDPMDIFEQLFGGA 98 (371)
T ss_pred -cCCcccCcc---CCChHHHHHHhhCCC
Confidence 000011111 246889999999853
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.79 E-value=1.7e-19 Score=178.24 Aligned_cols=101 Identities=43% Similarity=0.633 Sum_probs=78.2
Q ss_pred CchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCCCC
Q 047551 108 DYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNVRP 187 (352)
Q Consensus 108 d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~ 187 (352)
|||+||||+++|+.++||+|||+||++||||+|+.+.++++|+.|++||+||+|+.+|+.||.+|. .+...+. ..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~-~~~~~~~---~~- 75 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH-AGFNGGG---GG- 75 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccc-ccccccC---cC-
Confidence 799999999999999999999999999999999877889999999999999999999999999987 4433110 00
Q ss_pred CCcCCCCCCCC-CCCChHHHHHhhhCCC
Q 047551 188 RRRRAQHDFFD-DELDPDEIFRSFFGQQ 214 (352)
Q Consensus 188 ~~~~~~~~~~~-~~~~pediF~~fFGg~ 214 (352)
..++..++.. ...++.++|..|||++
T Consensus 76 -~~~~~~~~~~~~~~~~~~~f~~~fg~~ 102 (354)
T TIGR02349 76 -GGGGFNGFDIGFFGDFGDIFGDFFGGG 102 (354)
T ss_pred -CCCCcCCccccCcCchhhhHHHHhccC
Confidence 0011111100 1124679999999853
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=180.80 Aligned_cols=68 Identities=49% Similarity=0.909 Sum_probs=66.0
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
..|||+||||+++|+.+|||+|||+||++||||+|+.+.|+++|++|++||+|||||.+|+.||++|.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 57999999999999999999999999999999999888899999999999999999999999999987
No 26
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.8e-19 Score=179.34 Aligned_cols=70 Identities=54% Similarity=0.908 Sum_probs=65.4
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchh
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA-PGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEF 177 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~-~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~ 177 (352)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|++.|+.|++||+||+||.+|+.||.+|. .+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~-~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH-AGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc-hhh
Confidence 699999999999999999999999999999999974 5688999999999999999999999999997 444
No 27
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.3e-19 Score=179.64 Aligned_cols=67 Identities=52% Similarity=0.865 Sum_probs=64.1
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
.|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|+.|++||+||+||.||+.||++|.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 48999999999999999999999999999999997 46789999999999999999999999999997
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4.3e-19 Score=176.14 Aligned_cols=98 Identities=41% Similarity=0.692 Sum_probs=77.6
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCC--CcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAP--GSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHN 184 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~--~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 184 (352)
.|||+||||+++|+.+|||+|||+||+++|||+|+.. .|++.|+.|++||+||+|+.+|+.||.+|. .++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~-~~~~~----- 76 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT-VDFGA----- 76 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC-ccccc-----
Confidence 6999999999999999999999999999999999743 588999999999999999999999999997 43321
Q ss_pred CCCCCcCCCCCCCCCCCChHHHHHhhhCC
Q 047551 185 VRPRRRRAQHDFFDDELDPDEIFRSFFGQ 213 (352)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~pediF~~fFGg 213 (352)
.+ ...+..+ |....+++|+|..|||+
T Consensus 77 ~~--~~~~~~~-~~~~~~~~d~f~~~fg~ 102 (365)
T PRK14290 77 GG--SNFNWDN-FTHFSDINDIFNQIFGG 102 (365)
T ss_pred CC--CCccccc-cccccchhHHHHHHhcC
Confidence 00 0000011 11113578999999985
No 29
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.6e-19 Score=177.06 Aligned_cols=71 Identities=48% Similarity=0.855 Sum_probs=65.8
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchh
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEF 177 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~ 177 (352)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+||.+|+.||.+|. .+.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~-~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH-AAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc-ccc
Confidence 479999999999999999999999999999999997 46688999999999999999999999999997 443
No 30
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=3.1e-19 Score=178.67 Aligned_cols=68 Identities=49% Similarity=0.776 Sum_probs=64.8
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
.+|||+||||+++|+.+|||+|||+||++||||+|+ .+.|+++|++|++||+|||||+||+.||++|+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 479999999999999999999999999999999997 56789999999999999999999999999986
No 31
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.8e-19 Score=175.66 Aligned_cols=68 Identities=47% Similarity=0.845 Sum_probs=64.2
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcc----cCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDH----VGL 173 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~----~g~ 173 (352)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|+.|++||+||+||.+|+.||+ +|.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~ 80 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGN 80 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcc
Confidence 479999999999999999999999999999999997 45689999999999999999999999998 776
No 32
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=9.7e-19 Score=174.05 Aligned_cols=70 Identities=41% Similarity=0.779 Sum_probs=66.3
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchh
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEF 177 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~ 177 (352)
.|||+||||+++|+.+|||+|||+||++||||++..+.++++|++|++||+||+|+.+|+.||.+|. ++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~-~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGH-DAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccc-ccc
Confidence 6999999999999999999999999999999999877889999999999999999999999999997 443
No 33
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.3e-18 Score=173.31 Aligned_cols=67 Identities=48% Similarity=0.920 Sum_probs=65.4
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
.|||+||||+++|+.++||+|||+||+++|||+|+.+.++++|+.|++||+||+||.+|+.||.+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 6999999999999999999999999999999999888899999999999999999999999999987
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.75 E-value=1.7e-18 Score=168.10 Aligned_cols=67 Identities=45% Similarity=0.791 Sum_probs=64.9
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
.|||+||||+++|+.++||+|||+||+++|||++..+.++++|+.|++||++|+||.+|+.||.+|.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6999999999999999999999999999999999888899999999999999999999999999875
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.2e-18 Score=172.28 Aligned_cols=68 Identities=47% Similarity=0.872 Sum_probs=64.7
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
..|||+||||+++|+.+|||+|||+||++||||+|+ .+.|+++|+.|++||+||+||.+|+.||.+|.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 479999999999999999999999999999999997 45789999999999999999999999999987
No 36
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.1e-18 Score=166.81 Aligned_cols=166 Identities=29% Similarity=0.401 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCcccccccccCCCccccc---ccCCC
Q 047551 10 RCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACEKLGVGDSGPNVSSADEKRLDDQRSKPGLEK---LGEGL 86 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 86 (352)
=....|...++-|....|+..|+.|+.|||+. +..|+.....+. ...++..+++. +.. .
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikall~ra~c~l----------------~le~~e~AV~d~~~a~q-~ 350 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKALLRRANCHL----------------ALEKWEEAVEDYEKAMQ-L 350 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHh-h
Confidence 35677888899999999999999999999983 333333322210 00001111110 000 0
Q ss_pred CCCCCCCHH--HHHHHHHHhcCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC--CCcHHHHHHHHHHHHhcCch
Q 047551 87 SGERSYTEE--HVELIRQIKRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA--PGSEEAFKKVCKAFKCLSDD 162 (352)
Q Consensus 87 ~~~~~~t~~--~~~~~~~~~~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~--~~a~e~f~~I~~Ay~vLsd~ 162 (352)
..+.+.... +.....+..+.+|||+||||.+++++.+||+|||++|+.+|||++.. ..++..|++|.+||.||+||
T Consensus 351 ~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~ 430 (486)
T KOG0550|consen 351 EKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDP 430 (486)
T ss_pred ccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCH
Confidence 001111111 11223355679999999999999999999999999999999999863 46888999999999999999
Q ss_pred hhhhhhcccCCcchhhccccCCCCCCCcCCCCCCCCCCCChHHHHHhh
Q 047551 163 DSRRHYDHVGLVDEFEHNQRHNVRPRRRRAQHDFFDDELDPDEIFRSF 210 (352)
Q Consensus 163 ~kR~~YD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pediF~~f 210 (352)
.+|..||..-+.+... . +| .+|+|..+|+.|
T Consensus 431 ~kr~r~dsg~dle~~~------------~--~~---a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 431 MKRVRFDSGQDLEEVG------------S--GG---AGFDPFNIFRAF 461 (486)
T ss_pred HHHhhcccccchhhhc------------C--CC---cCcChhhhhhhc
Confidence 9999999876533211 1 11 367888888887
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.73 E-value=4.4e-18 Score=181.22 Aligned_cols=69 Identities=30% Similarity=0.516 Sum_probs=66.1
Q ss_pred cCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 105 RNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 105 ~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
...+||+||||+++|+..+||+|||+||+++||||++.+.|.+.|+.|++||+|||||.+|+.||.+|.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 368999999999999999999999999999999999877788999999999999999999999999987
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.6e-18 Score=159.89 Aligned_cols=68 Identities=44% Similarity=0.770 Sum_probs=66.1
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA-PGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~-~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
..|+|+|||++++|+.++|||+||+|++++|||++++ |.+.++|++||+||+|||||.+|..||.+|+
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 6889999999999999999999999999999999986 8999999999999999999999999999988
No 39
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.8e-18 Score=162.52 Aligned_cols=87 Identities=40% Similarity=0.774 Sum_probs=77.0
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCCCC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHNVR 186 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~ 186 (352)
.|||+||||+++|+..|||+||++||+++|||.|...+|.+.|+.|.+||+||+|++||..||..|. ..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~-~~---------- 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGL-EQ---------- 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhh-hc----------
Confidence 4999999999999999999999999999999999999999999999999999999999999999887 21
Q ss_pred CCCcCCCCCCCCCCCChHHHHHhhhCC
Q 047551 187 PRRRRAQHDFFDDELDPDEIFRSFFGQ 213 (352)
Q Consensus 187 ~~~~~~~~~~~~~~~~pediF~~fFGg 213 (352)
.+ ....+|.++|..+|++
T Consensus 112 ---~~------~~~g~~~~~~~~~~~~ 129 (288)
T KOG0715|consen 112 ---HG------EFGGNPFDVFLEFFGG 129 (288)
T ss_pred ---cc------cccCCccchHHHhhcc
Confidence 00 1122778889999987
No 40
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9.2e-18 Score=161.22 Aligned_cols=90 Identities=38% Similarity=0.688 Sum_probs=78.7
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC-CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK-APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHN 184 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~-~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 184 (352)
..|||+||||+.+|+..+|++|||+.|++||||||+ +|.|.+.|+.+.+||+||+|+.+|+.||..|. .+..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k-~~~~------ 76 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRK-SGSS------ 76 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh-hccc------
Confidence 689999999999999999999999999999999998 68899999999999999999999999999887 2221
Q ss_pred CCCCCcCCCCCCCCCCCChHHHHHhhhCCC
Q 047551 185 VRPRRRRAQHDFFDDELDPDEIFRSFFGQQ 214 (352)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~pediF~~fFGg~ 214 (352)
.. .-.++-++|++-||+.
T Consensus 77 -----~~-------~~~d~~~~~r~~f~~d 94 (296)
T KOG0691|consen 77 -----AQ-------GREDQADGFRKKFGSD 94 (296)
T ss_pred -----ch-------hhhhHHHHHHHHhhhh
Confidence 00 1357788999999865
No 41
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-17 Score=153.55 Aligned_cols=89 Identities=43% Similarity=0.720 Sum_probs=77.1
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC---CCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhcccc
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK---APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQR 182 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~---~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~ 182 (352)
..|+|+||||.++|++.+|++||++||++||||+++ ...+++.|+.|+.||+||||.++|+.||..|.+++..
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~~---- 88 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDES---- 88 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCcc----
Confidence 569999999999999999999999999999999995 3468899999999999999999999999999855322
Q ss_pred CCCCCCCcCCCCCCCCCCCChHHHHHhhhC
Q 047551 183 HNVRPRRRRAQHDFFDDELDPDEIFRSFFG 212 (352)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~pediF~~fFG 212 (352)
| +-..++-++|+++|-
T Consensus 89 ---------~-----d~~~~~~e~~~~iyk 104 (264)
T KOG0719|consen 89 ---------G-----DIDEDWLEFWRAIYK 104 (264)
T ss_pred ---------c-----hhhhHHHHHHHHHHh
Confidence 0 124678899999884
No 42
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.69 E-value=1.3e-17 Score=125.04 Aligned_cols=62 Identities=48% Similarity=0.797 Sum_probs=59.4
Q ss_pred CchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCC--cHHHHHHHHHHHHhcCchhhhhhhc
Q 047551 108 DYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPG--SEEAFKKVCKAFKCLSDDDSRRHYD 169 (352)
Q Consensus 108 d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~--a~e~f~~I~~Ay~vLsd~~kR~~YD 169 (352)
|||+||||+++++.++||++|+++++++|||++.... +++.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987766 8899999999999999999999998
No 43
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.9e-17 Score=164.18 Aligned_cols=68 Identities=41% Similarity=0.702 Sum_probs=63.7
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC--CCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA--PGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~--~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
.+.||+||||.++|++.+||++||+|||+||||||+. ..|++.|+.|+.||+|||||..|++||.+.+
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 5789999999999999999999999999999999875 4578999999999999999999999999866
No 44
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.9e-17 Score=160.82 Aligned_cols=72 Identities=39% Similarity=0.712 Sum_probs=66.6
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCC----CcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhh
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAP----GSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFE 178 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~----~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~ 178 (352)
+.|||.+|+|+++||++|||+|||++++.+||||..+| .|++.|+.|..||+|||||++|++||.+|. .++.
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~-qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE-QGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh-cccc
Confidence 56899999999999999999999999999999998865 488999999999999999999999999998 5554
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.64 E-value=3e-16 Score=137.61 Aligned_cols=85 Identities=28% Similarity=0.422 Sum_probs=72.7
Q ss_pred CCchhhcCcCCCC--CHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccCC
Q 047551 107 KDYYAILGVERSC--SVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRHN 184 (352)
Q Consensus 107 ~d~Y~iLgv~~~a--~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 184 (352)
..+|+||||+++| |.++||+|||++|+++||||+ +.++.|+.|++||++|+|+.+|..||.+|. +....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~-~~~~~----- 75 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEE-DSSSE----- 75 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCC-ccccc-----
Confidence 3579999999999 999999999999999999997 557899999999999999999999999987 33210
Q ss_pred CCCCCcCCCCCCCCCCCChHHHHHhhhCCC
Q 047551 185 VRPRRRRAQHDFFDDELDPDEIFRSFFGQQ 214 (352)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~pediF~~fFGg~ 214 (352)
..+.|.+.|.+.||+.
T Consensus 76 --------------~~~~~~~~f~~~fg~~ 91 (153)
T PHA03102 76 --------------EEDVPSGYVGATFGDR 91 (153)
T ss_pred --------------ccccHHHHhhhhcCCc
Confidence 0122899999999876
No 46
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-15 Score=138.31 Aligned_cols=73 Identities=42% Similarity=0.715 Sum_probs=67.4
Q ss_pred cCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchh
Q 047551 105 RNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA-PGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEF 177 (352)
Q Consensus 105 ~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~-~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~ 177 (352)
+..|+|+||||++++++.|||||||+|++++||||++. .+.++.|..|++||+.|+|+..|..|..+|.++++
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp 170 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP 170 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence 47899999999999999999999999999999999987 56678889999999999999999999999985543
No 47
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.59 E-value=1.2e-15 Score=112.63 Aligned_cols=57 Identities=56% Similarity=0.932 Sum_probs=53.7
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCC--CCCcHHHHHHHHHHHHhcCchh
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNK--APGSEEAFKKVCKAFKCLSDDD 163 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~--~~~a~e~f~~I~~Ay~vLsd~~ 163 (352)
.|||+||||+++++.++||++|+++++++|||++. .+.+++.|+.|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999997 5678999999999999999985
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.59 E-value=1.8e-15 Score=158.39 Aligned_cols=67 Identities=43% Similarity=0.803 Sum_probs=64.7
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
.|||+||||+++|+..+||+|||+|++++|||++..+.+.++|+.|++||++|+||.+|+.||.+|.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 6999999999999999999999999999999999888888999999999999999999999999886
No 49
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.57 E-value=3e-15 Score=108.37 Aligned_cols=54 Identities=61% Similarity=0.962 Sum_probs=51.4
Q ss_pred CchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC-CCcHHHHHHHHHHHHhcCc
Q 047551 108 DYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA-PGSEEAFKKVCKAFKCLSD 161 (352)
Q Consensus 108 d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~-~~a~e~f~~I~~Ay~vLsd 161 (352)
|||+||||+++++.++||++||+|++++|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999976 6789999999999999986
No 50
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.3e-15 Score=146.45 Aligned_cols=71 Identities=41% Similarity=0.636 Sum_probs=67.6
Q ss_pred HHhcCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccC
Q 047551 102 QIKRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVG 172 (352)
Q Consensus 102 ~~~~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g 172 (352)
++.++.|.|.||||++++++++|||.|||+|.+.|||||..+.|+|+|+.|..||++|+|+++|..||...
T Consensus 230 re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 230 RELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred hhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999764
No 51
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.5e-14 Score=136.04 Aligned_cols=104 Identities=42% Similarity=0.692 Sum_probs=81.1
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCC--CcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhhccccC
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAP--GSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFEHNQRH 183 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~--~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~ 183 (352)
..|||+||+|.++|+..+|++|||++|+++|||||+.+ .++.+|++|++||++|+|+.+|..||.+|+ +......
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~-~~~~~~~-- 78 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE-EGLKGGG-- 78 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc-cccccCC--
Confidence 47999999999999999999999999999999998877 566689999999999999999999999998 6554210
Q ss_pred CCCCCCcCCCCCCCCCCCChHHHHHhhhCCC
Q 047551 184 NVRPRRRRAQHDFFDDELDPDEIFRSFFGQQ 214 (352)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~pediF~~fFGg~ 214 (352)
.. ........++.....+.++|.+|||..
T Consensus 79 ~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~ 107 (306)
T KOG0714|consen 79 SF--SSSFTSELFYFLFRKPDKDFYEFFGVS 107 (306)
T ss_pred CC--CCCCCCCcceeccCchhhhHHHHhCCC
Confidence 00 000001112334567899999999844
No 52
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.6e-15 Score=131.13 Aligned_cols=67 Identities=51% Similarity=0.838 Sum_probs=63.2
Q ss_pred cCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCC--cHHHHHHHHHHHHhcCchhhhhhhccc
Q 047551 105 RNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPG--SEEAFKKVCKAFKCLSDDDSRRHYDHV 171 (352)
Q Consensus 105 ~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~--a~e~f~~I~~Ay~vLsd~~kR~~YD~~ 171 (352)
...|||+||||.++|+..+|+++||++|+++|||+++... +++.|+.|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 3679999999999999999999999999999999998554 899999999999999999999999986
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=7.6e-13 Score=118.57 Aligned_cols=65 Identities=20% Similarity=0.385 Sum_probs=57.5
Q ss_pred CCchhhcCcCCC--CCHHHHHHHHHHhhhhhCCCCCCCCC------cHHHHHHHHHHHHhcCchhhhhhhccc
Q 047551 107 KDYYAILGVERS--CSVEEIRKAYRKLSLKVHPDKNKAPG------SEEAFKKVCKAFKCLSDDDSRRHYDHV 171 (352)
Q Consensus 107 ~d~Y~iLgv~~~--a~~~eIkkaYrkla~~~HPDk~~~~~------a~e~f~~I~~Ay~vLsd~~kR~~YD~~ 171 (352)
.|||+||||++. ++..+|+++||+|++++|||+..... +.+.|+.|++||++|+||.+|+.|+-.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999995 78899999999999999999976432 456799999999999999999999854
No 54
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=9.1e-13 Score=117.53 Aligned_cols=66 Identities=24% Similarity=0.417 Sum_probs=57.0
Q ss_pred CCchhhcCcCCC--CCHHHHHHHHHHhhhhhCCCCCCCCC----cHHHHHHHHHHHHhcCchhhhhhhcccC
Q 047551 107 KDYYAILGVERS--CSVEEIRKAYRKLSLKVHPDKNKAPG----SEEAFKKVCKAFKCLSDDDSRRHYDHVG 172 (352)
Q Consensus 107 ~d~Y~iLgv~~~--a~~~eIkkaYrkla~~~HPDk~~~~~----a~e~f~~I~~Ay~vLsd~~kR~~YD~~g 172 (352)
.|||+||||++. ++..+|+++||+|++++|||++.... +.+.+..|++||++|+||.+|+.|+-..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 589999999996 78999999999999999999986422 2234789999999999999999998653
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.3e-13 Score=123.69 Aligned_cols=69 Identities=38% Similarity=0.683 Sum_probs=66.0
Q ss_pred cCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 105 RNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 105 ~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
+..|.|+||||.+.++..+|.+|||+||+++|||+++.+.+.+.|+.|..||++|.|.+.|..||-..+
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 367899999999999999999999999999999999999999999999999999999999999998866
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=4.4e-12 Score=113.83 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=59.8
Q ss_pred cCCCchhhcCcCCC--CCHHHHHHHHHHhhhhhCCCCCCCCC------cHHHHHHHHHHHHhcCchhhhhhhcccC
Q 047551 105 RNKDYYAILGVERS--CSVEEIRKAYRKLSLKVHPDKNKAPG------SEEAFKKVCKAFKCLSDDDSRRHYDHVG 172 (352)
Q Consensus 105 ~~~d~Y~iLgv~~~--a~~~eIkkaYrkla~~~HPDk~~~~~------a~e~f~~I~~Ay~vLsd~~kR~~YD~~g 172 (352)
+..|||++|||++. .+..+|+++||+|++++|||++.... +.+.|..||+||++|+||.+|+.|+-..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l 77 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 46899999999996 67899999999999999999986432 4567999999999999999999999643
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=5.3e-12 Score=113.62 Aligned_cols=65 Identities=25% Similarity=0.422 Sum_probs=56.5
Q ss_pred CCCchhhcCcCCC--CCHHHHHHHHHHhhhhhCCCCCCC-CCcH-----HHHHHHHHHHHhcCchhhhhhhcc
Q 047551 106 NKDYYAILGVERS--CSVEEIRKAYRKLSLKVHPDKNKA-PGSE-----EAFKKVCKAFKCLSDDDSRRHYDH 170 (352)
Q Consensus 106 ~~d~Y~iLgv~~~--a~~~eIkkaYrkla~~~HPDk~~~-~~a~-----e~f~~I~~Ay~vLsd~~kR~~YD~ 170 (352)
..|||+||||++. ++..+|+++||+|++++|||++.. +.++ +.+..||+||++|+||.+|+.|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4799999999995 689999999999999999999864 3322 336899999999999999999995
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.22 E-value=1.2e-11 Score=103.67 Aligned_cols=51 Identities=37% Similarity=0.492 Sum_probs=48.0
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcC
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLS 160 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLs 160 (352)
.++|+||||+++++.++||++||+|++++|||++ ++.+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999985 67889999999999985
No 59
>PHA02624 large T antigen; Provisional
Probab=99.20 E-value=2.7e-11 Score=125.86 Aligned_cols=61 Identities=28% Similarity=0.481 Sum_probs=57.4
Q ss_pred CCCchhhcCcCCCC--CHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhc
Q 047551 106 NKDYYAILGVERSC--SVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYD 169 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a--~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD 169 (352)
..++|+||||+++| +..+||+|||++|+++||||+ ++++.|+.|+.||++|+|+.+|..|.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 45789999999999 999999999999999999996 67899999999999999999999994
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.12 E-value=4.7e-11 Score=114.13 Aligned_cols=56 Identities=36% Similarity=0.518 Sum_probs=50.6
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC--------CCcHHHHHHHHHHHHhcCc
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA--------PGSEEAFKKVCKAFKCLSD 161 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~--------~~a~e~f~~I~~Ay~vLsd 161 (352)
-.|+|+||||++++|.++||++||+|++++|||++.. +.++++|+.|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999753 2367899999999999975
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.07 E-value=8.3e-11 Score=117.01 Aligned_cols=74 Identities=39% Similarity=0.636 Sum_probs=67.5
Q ss_pred cCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC------CCcHHHHHHHHHHHHhcCchhhhhhhcccCCcchhh
Q 047551 105 RNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA------PGSEEAFKKVCKAFKCLSDDDSRRHYDHVGLVDEFE 178 (352)
Q Consensus 105 ~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~------~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~~~~~~ 178 (352)
+.-|+|+||||+.+++..+||++||+|+.++||||-+. ..-++.++.|++||..|+|...|..|-.+|.++.++
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ 175 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ 175 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence 47899999999999999999999999999999999764 235789999999999999999999999999977664
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.5e-10 Score=101.50 Aligned_cols=62 Identities=40% Similarity=0.660 Sum_probs=57.4
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCC--CCcHHHHHHHHHHHHhcCchhhhhh
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKA--PGSEEAFKKVCKAFKCLSDDDSRRH 167 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~--~~a~e~f~~I~~Ay~vLsd~~kR~~ 167 (352)
+.|+|+||.|.+..+.++||+.||+|++..|||||++ +.|..||-.|.+||.+|-|+..|..
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 6799999999999999999999999999999999984 6799999999999999999986554
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.84 E-value=5.5e-09 Score=93.88 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=56.9
Q ss_pred CCchhhcCcCCC--CCHHHHHHHHHHhhhhhCCCCCCCCC------cHHHHHHHHHHHHhcCchhhhhhhccc
Q 047551 107 KDYYAILGVERS--CSVEEIRKAYRKLSLKVHPDKNKAPG------SEEAFKKVCKAFKCLSDDDSRRHYDHV 171 (352)
Q Consensus 107 ~d~Y~iLgv~~~--a~~~eIkkaYrkla~~~HPDk~~~~~------a~e~f~~I~~Ay~vLsd~~kR~~YD~~ 171 (352)
.|||++|||++. .+...++++|++|.+++|||+....+ +.+.-..||+||.+|+||-+|+.|=-.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 589999999996 89999999999999999999986544 334578899999999999999998653
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.78 E-value=7.9e-09 Score=91.48 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHhhhhhCCCCCCCCC------cHHHHHHHHHHHHhcCchhhhhhhcccC
Q 047551 119 CSVEEIRKAYRKLSLKVHPDKNKAPG------SEEAFKKVCKAFKCLSDDDSRRHYDHVG 172 (352)
Q Consensus 119 a~~~eIkkaYrkla~~~HPDk~~~~~------a~e~f~~I~~Ay~vLsd~~kR~~YD~~g 172 (352)
.+..+|+++||+|++++|||+..... +.+.|..|++||++|+||.+|+.|+-..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 47789999999999999999965432 5678999999999999999999999754
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.2e-08 Score=96.06 Aligned_cols=69 Identities=36% Similarity=0.532 Sum_probs=62.4
Q ss_pred cCCCchhhcCcCC---CCCHHHHHHHHHHhhhhhCCCCCC---CCCcHHHHHHHHHHHHhcCchhhhhhhcccCC
Q 047551 105 RNKDYYAILGVER---SCSVEEIRKAYRKLSLKVHPDKNK---APGSEEAFKKVCKAFKCLSDDDSRRHYDHVGL 173 (352)
Q Consensus 105 ~~~d~Y~iLgv~~---~a~~~eIkkaYrkla~~~HPDk~~---~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~g~ 173 (352)
+..|+|.+||++. .++..+|.++.++.+.+||||+.. +.+..+.|+.|..||+||+|+.+|..||....
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 4689999999997 688999999999999999999974 35678999999999999999999999998754
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.4e-06 Score=91.40 Aligned_cols=54 Identities=41% Similarity=0.600 Sum_probs=46.5
Q ss_pred CCchhhcCcCCC----CCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCch
Q 047551 107 KDYYAILGVERS----CSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDD 162 (352)
Q Consensus 107 ~d~Y~iLgv~~~----a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~ 162 (352)
.+-|+||.|+-+ -..+.||++|+|||.+|||||| |+-.+.|..|++||++|+..
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLSSE 1338 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHHHH
Confidence 456999999853 3448999999999999999999 67789999999999999843
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=5.8e-06 Score=76.72 Aligned_cols=57 Identities=30% Similarity=0.606 Sum_probs=52.8
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHH-hcCch
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFK-CLSDD 162 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~-vLsd~ 162 (352)
-..+|.||||...|+.++++.+|.+||+++|||........+.|..|.+||. ||+..
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999988888999999999999 88743
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=5e-05 Score=62.50 Aligned_cols=49 Identities=33% Similarity=0.467 Sum_probs=43.1
Q ss_pred hhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCch
Q 047551 111 AILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDD 162 (352)
Q Consensus 111 ~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~ 162 (352)
-||||.++++.+.||.|+||+.+..|||+..+| -.-.+|++|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence 489999999999999999999999999998555 4556799999999754
No 69
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=6.1e-07 Score=84.31 Aligned_cols=288 Identities=25% Similarity=0.281 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCccccccc-ccCCCccccccc
Q 047551 5 KDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACEKLGVGDSGPNVSSADEKRLD-DQRSKPGLEKLG 83 (352)
Q Consensus 5 kdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (352)
.+++.+|+.++..+... +..+|.+++.++.+.++++.. ...+.. +...-.++-...+....... ......+....+
T Consensus 2 ~~d~~~~l~i~~~as~~-~i~ka~~~~a~~~hpdk~~~~-~~~~~~-~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~ 78 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEE-DIKKAYRKLALKYHPDKNPSP-KEVAEA-KFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGG 78 (306)
T ss_pred cccHHHHhCccccccHH-HHHHHHHHHHHhhCCCCCCCc-hhhHHH-HHhhhhccccccCCHHHhhhccccCccccccCC
Confidence 56889999999999999 999999999999999997665 222222 11000000000000000000 000000001000
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchh
Q 047551 84 EGLSGERSYTEEHVELIRQIKRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDD 163 (352)
Q Consensus 84 ~~~~~~~~~t~~~~~~~~~~~~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~ 163 (352)
.....++.. ...+.....+.+||++||+....+.. .+.|+ |++..++ .+.|..+..+..+|.++
T Consensus 79 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~- 142 (306)
T KOG0714|consen 79 ---SFSSSFTSE-LFYFLFRKPDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP- 142 (306)
T ss_pred ---CCCCCCCCC-cceeccCchhhhHHHHhCCCCCCccc--cccCC--------ccccccC-ccccccccccccccCCC-
Confidence 000111111 12233445588999999988776654 44444 7777777 88899999999999999
Q ss_pred hhhhhcccCCcchhhccccCCCCCCCcCCCCC--CCCCCCChHHHHHhhhCCCCCCCCccc------ccccCC-cchhhh
Q 047551 164 SRRHYDHVGLVDEFEHNQRHNVRPRRRRAQHD--FFDDELDPDEIFRSFFGQQDMFRTTRV------YRTRGM-RSQERE 234 (352)
Q Consensus 164 kR~~YD~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~pediF~~fFGg~~~f~~~~~------~~~~~~-~~~~r~ 234 (352)
.|..||..+. ........+ ..+. .+..++.+...+.++++.......... +..... ++....
T Consensus 143 ~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (306)
T KOG0714|consen 143 KRKQYDSSGS-DRSARQSPP--------VEHPLRVSLEDLYKGESKKMKISRQSFTSNGREGSSRSRYLSISIKPGWKEG 213 (306)
T ss_pred cccccccccc-cccccCCCC--------ccCCcceeHHHhccccceeeecccccccCCcccccCccceeEEeccCCcccc
Confidence 9999999876 221110000 1111 022334444555666543311111111 110000 000000
Q ss_pred hh---ccCCchHHHHHHHHHHHHHHHHHhcC---CCCCCccccCCCCccceeeccCCCceeeccCCccccccCCCCchhh
Q 047551 235 EF---HGAGLNFVFLLQILPFLLIFLLAYLP---YSEPDYSLHRNFNYQIPRTTEKHGIEFYVKSPASFDENFPHGSSAR 308 (352)
Q Consensus 235 ~~---~~~~~~~~~~~qllpil~l~~~~~~~---~~~P~ysl~~~~~~~~~r~T~~~~v~yyV~~~~~f~~~~~~~~~~~ 308 (352)
.. ...+.. -..++|+.+++++...+ +..+.++|..+..+.+.+.+...++.++|.. .+...++... .
T Consensus 214 ~~~~~~~~~~~---~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~--~ 286 (306)
T KOG0714|consen 214 TKITFPEEGDE---EPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPT--LDGRSYSLSI--N 286 (306)
T ss_pred cceeccccccc---cCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeec--ccCccccCcc--c
Confidence 00 000000 00056666666554332 4777888876667888889999999999985 5666665432 1
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 047551 309 AVIEDNVIKDYRNLLWRYC 327 (352)
Q Consensus 309 ~~lE~~Ve~~y~~~l~~~C 327 (352)
..++..++..|+..+...|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 287 KDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred ccccCCCceeeecCCCCCC
Confidence 2677777777776655544
No 70
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0031 Score=55.50 Aligned_cols=68 Identities=24% Similarity=0.431 Sum_probs=54.4
Q ss_pred hcCCCchhhcCcCC--CCCHHHHHHHHHHhhhhhCCCCCCCC------CcHHHHHHHHHHHHhcCchhhhhhhccc
Q 047551 104 KRNKDYYAILGVER--SCSVEEIRKAYRKLSLKVHPDKNKAP------GSEEAFKKVCKAFKCLSDDDSRRHYDHV 171 (352)
Q Consensus 104 ~~~~d~Y~iLgv~~--~a~~~eIkkaYrkla~~~HPDk~~~~------~a~e~f~~I~~Ay~vLsd~~kR~~YD~~ 171 (352)
....+||.++|... ..+++-++.-|.-...++|||+...+ .|.+.-..|++||.+|.||-+|+.|=..
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34678999998664 45666667688899999999995432 3567789999999999999999999754
No 71
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.38 E-value=0.01 Score=37.68 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
|+-+..+|..++..|++++|++.+++|++++|+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4457789999999999999999999999999973
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0047 Score=55.51 Aligned_cols=56 Identities=36% Similarity=0.542 Sum_probs=47.0
Q ss_pred HhcCCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCC--------cHHHHHHHHHHHHh
Q 047551 103 IKRNKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPG--------SEEAFKKVCKAFKC 158 (352)
Q Consensus 103 ~~~~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~--------a~e~f~~I~~Ay~v 158 (352)
.....|.|.+|||...++..+|+++||++....|||+-...+ +.+.++.|++||+.
T Consensus 109 ~~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 109 QLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred cccchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 333479999999999999999999999999999999864333 66778888888874
No 73
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.08 E-value=0.017 Score=36.97 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
|.-+..+|..++..|++++|+..+++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 455788999999999999999999999999997
No 74
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.70 E-value=0.011 Score=60.94 Aligned_cols=40 Identities=38% Similarity=0.647 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHhhhhhCCCCCCCCCc--------HHHHHHHHHHHH
Q 047551 118 SCSVEEIRKAYRKLSLKVHPDKNKAPGS--------EEAFKKVCKAFK 157 (352)
Q Consensus 118 ~a~~~eIkkaYrkla~~~HPDk~~~~~a--------~e~f~~I~~Ay~ 157 (352)
=.+.++|||+|||..|.+||||.+-.++ ++.|-.+.+||.
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn 446 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWN 446 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999876553 444555555554
No 75
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.36 E-value=0.036 Score=38.00 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.+.+|..++..|++++|++.++++++++|+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56789999999999999999999999999865
No 76
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.38 E-value=0.089 Score=33.36 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
|.-+..+|..+...||+++|++.+++|++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345788999999999999999999999999984
No 77
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.34 E-value=0.11 Score=37.70 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHHHh
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAACEK 52 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~~~ 52 (352)
.--+|..+++-|++++|+++++.+++++|+.. +..|...++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 34578889999999999999999999999876 7777777754
No 78
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.17 E-value=0.074 Score=39.13 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.|+-+..+|..++..|++++|+..+.+|++++|+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 477889999999999999999999999999999854
No 79
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=93.20 E-value=0.16 Score=43.57 Aligned_cols=51 Identities=35% Similarity=0.356 Sum_probs=39.5
Q ss_pred hhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchh
Q 047551 110 YAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDD 163 (352)
Q Consensus 110 Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~ 163 (352)
..||||++..+.++|.+.|.+|-...+|++. |..-.-.+|..|.++|...-
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999987 67777788999999987554
No 80
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.071 Score=47.87 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=48.6
Q ss_pred chhhcCcCCCC--CHHHHHHHHHHhhhhhCCCCCCCCCcH------HHHHHHHHHHHhcCchhhhhhhcccC
Q 047551 109 YYAILGVERSC--SVEEIRKAYRKLSLKVHPDKNKAPGSE------EAFKKVCKAFKCLSDDDSRRHYDHVG 172 (352)
Q Consensus 109 ~Y~iLgv~~~a--~~~eIkkaYrkla~~~HPDk~~~~~a~------e~f~~I~~Ay~vLsd~~kR~~YD~~g 172 (352)
|....|..+.+ ..+.++..|+.+.+.+|||+....+.. +.+..++.||.+|.||-+|+.|=..-
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal 74 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLAL 74 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 34444544432 456788999999999999998765533 45788999999999999999987543
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.36 E-value=0.11 Score=38.18 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 047551 4 NKDEALRCIRIAEEAIASG-KKQRALKFIKIAQRLND 39 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~g-d~~~A~kf~~kA~~L~P 39 (352)
|.+.+.-...+|..++..| ++++|++.+++|++++|
T Consensus 33 ~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 33 DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3445556778888899999 79999999999999998
No 82
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.46 E-value=0.2 Score=36.63 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CHHHHHH
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNL-SVHEVLA 48 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~-~~~~ll~ 48 (352)
.+.+|..+++.|++++|+..+.++...+|+. .+..|++
T Consensus 28 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 28 RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4456666666666666666666666666663 2444443
No 83
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.37 E-value=0.39 Score=31.41 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
+..+|..+.+.|++++|+.++++|+.+..+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 567899999999999999999997766543
No 84
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.61 E-value=0.47 Score=29.42 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
...+|..+++.|++++|++.+++.++.+|+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 5678999999999999999999999999973
No 85
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.53 E-value=0.36 Score=33.79 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 12 IRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 12 ~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
+++|+.+++.||.++|+..+++.+.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 68899999999999999999999953
No 86
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.35 E-value=0.56 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
+..+|..++..|+++.|+..+.++++++|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 567788999999999999999999999986
No 87
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.96 E-value=0.48 Score=46.14 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHH
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVH 44 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~ 44 (352)
++.+|+++..-..++++.++|..|+..|.+|+.|+|+..+.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy 117 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY 117 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH
Confidence 77889999999999999999999999999999999997653
No 88
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.70 E-value=0.53 Score=34.14 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHH
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAAC 50 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~ 50 (352)
..|..+++.|++++|++.++++++.+|... +..++..|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~ 40 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRI 40 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 578899999999999999999999999743 44444444
No 89
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.24 E-value=0.79 Score=33.18 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
.+.-...+|..++..|++++|+..++++++++|+.
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34446677888999999999999999999999984
No 90
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=85.87 E-value=1.2 Score=32.38 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=26.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHH
Q 047551 18 AIASGKKQRALKFIKIAQRLNDNLS-VHEVLAAC 50 (352)
Q Consensus 18 ~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~ 50 (352)
+++.|++++|++.+++++..+|+.. +.-.+..|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 34 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQC 34 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4789999999999999999999854 44444443
No 91
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.76 E-value=2.5 Score=36.89 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHH
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAA 49 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~ 49 (352)
+.+.++.|++++.+||+.-|..+++.++..+|+.. ++.|...
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~ 112 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKAD 112 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 35688899999999999999999999999999865 6665553
No 92
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=84.52 E-value=1.9 Score=31.71 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=12.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 17 EAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 17 ~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
.++..+|+++|++.+++++.++|+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~ 27 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD 27 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc
Confidence 344555555555555555555554
No 93
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.76 E-value=3.7 Score=26.46 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 9 LRCIRIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 9 ~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
.-+-.+|..+...|++++|++++++|+.+.-.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 34667899999999999999999999987543
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=81.58 E-value=13 Score=33.70 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
|-+.++-+..++..++..|+++.|+..+.+|++++|+..
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~ 107 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA 107 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 334566788999999999999999999999999999854
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=80.77 E-value=8.5 Score=38.76 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 3 GNKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 3 ~NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
+|+.|+++-+++..+.+..|++..|+..+.+|+.++|+.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~ 71 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN 71 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 578899999999999999999999999999999999984
No 96
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=79.99 E-value=3.3 Score=30.40 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHH
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVH 44 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~ 44 (352)
+...-+...|.-++..|++++|++.+++++++.|+....
T Consensus 27 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 27 DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 344445667888899999999999999999999987643
No 97
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=79.62 E-value=3.5 Score=32.48 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
.=+.|..+|+.|..+=+.|+.+.|+.+|++++++
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999864
No 98
>PF13446 RPT: A repeated domain in UCH-protein
Probab=78.61 E-value=2.3 Score=31.42 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.9
Q ss_pred chhhcCcCCCCCHHHHHHHHHHhhh
Q 047551 109 YYAILGVERSCSVEEIRKAYRKLSL 133 (352)
Q Consensus 109 ~Y~iLgv~~~a~~~eIkkaYrkla~ 133 (352)
-|++|||+++.+++.|-.+|+....
T Consensus 7 Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 7 AYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999998766
No 99
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=77.63 E-value=8.3 Score=31.67 Aligned_cols=45 Identities=36% Similarity=0.398 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 047551 5 KDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAA 49 (352)
Q Consensus 5 kdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~ 49 (352)
++.|.+.+.-+-.++.+||+..|.|.+.||.+.-+.+....|++.
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA 100 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAA 100 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 356788899999999999999999999999998777666655543
No 100
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=77.00 E-value=6.1 Score=39.23 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 3 GNKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 3 ~NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+|+-||.-+++.|....++|+.++|.++.+-|+.|.|+.+
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p 150 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP 150 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH
Confidence 5788999999999999999999999999999999999954
No 101
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.95 E-value=6.3 Score=29.50 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
+.|..++..|.++=+.|+++.|+.++.+|+.+
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999888776654
No 102
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.90 E-value=5.6 Score=40.35 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHH
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAAC 50 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~ 50 (352)
+...++.++..|+++.|+.+++||++++|... +..-|.+|
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44557788888999999999999999999875 44444444
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=76.67 E-value=5 Score=39.88 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 9 LRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 9 ~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
..++..|.+++..|+++.|+..+.+|++++|+..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~ 36 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA 36 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3578889999999999999999999999999854
No 104
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.57 E-value=6.4 Score=37.36 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=36.4
Q ss_pred CHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHH
Q 047551 4 NKDEA-LRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLA 48 (352)
Q Consensus 4 NkdEA-~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~ 48 (352)
+..+| .--|.+|..+|++||+..|++-++||++.||+.. +...++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A 76 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA 76 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34454 4578999999999999999999999999999965 444444
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=76.17 E-value=6.3 Score=32.29 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
.+|..++..|+++.|++.++++++++|+
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444444445555555555555555444
No 106
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=76.03 E-value=2.2 Score=41.84 Aligned_cols=53 Identities=45% Similarity=0.674 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHhhhhhCCCCCC-----CCCcHHHHHHHHHHHHhcCchhhhhhhccc
Q 047551 119 CSVEEIRKAYRKLSLKVHPDKNK-----APGSEEAFKKVCKAFKCLSDDDSRRHYDHV 171 (352)
Q Consensus 119 a~~~eIkkaYrkla~~~HPDk~~-----~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~ 171 (352)
++..+|..+|+..++..||++.. ....++.|++|.+||.||++..+|..+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 57788999999999999999874 234567899999999999986665555554
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=75.63 E-value=4.7 Score=28.60 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+..+|..++..|++++|++++.++++++|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 34 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA 34 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence 66788999999999999999999999999864
No 108
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=74.46 E-value=11 Score=30.90 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
|.+.+.-.+.+|..++..|++++|+..+.+++.++|...
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 51 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS 51 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Confidence 444556678889999999999999999999999999854
No 109
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=72.63 E-value=18 Score=37.52 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+-+.++-++.++..++..|++++|+..+++|++++|+..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 345567799999999999999999999999999999965
No 110
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=72.16 E-value=11 Score=31.78 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-H-HHHHHHHHhc
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-V-HEVLAACEKL 53 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~-~~ll~~~~~l 53 (352)
+..+|+.++..|+++.|++.+.+++.++|..+ + ..|+..+...
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~ 109 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ 109 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 44566778899999999999999999999976 3 3455555444
No 111
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=71.61 E-value=15 Score=31.34 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 047551 10 RCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACEK 52 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~ 52 (352)
.-+.+++..+..|+++.|..-+-+|+.+||. ..+||.+++.
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q--P~~LL~i~q~ 105 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ--PAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS--HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 5688999999999999999999999999999 4457776653
No 112
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=71.52 E-value=7.9 Score=38.45 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHH
Q 047551 12 IRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAAC 50 (352)
Q Consensus 12 ~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~ 50 (352)
..+|..++..|+++.|+..+++|++++|+.. +..++..|
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555666666667777777777766654 44455555
No 113
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.58 E-value=9.9 Score=35.67 Aligned_cols=39 Identities=15% Similarity=0.013 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
++.+|.++..-..+.+..|+|++|..-|..|+.++|...
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~ 129 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS 129 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc
Confidence 467788888888899999999999999999999999876
No 114
>PRK05685 fliS flagellar protein FliS; Validated
Probab=69.22 E-value=9.4 Score=32.69 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
|.|.+.++.|+.++..||++++-.-+.||+.+-
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii 65 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINII 65 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998763
No 115
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=68.82 E-value=16 Score=33.12 Aligned_cols=45 Identities=20% Similarity=0.108 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--HHHHHHHHH
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS--VHEVLAACE 51 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~--~~~ll~~~~ 51 (352)
.+......|...+..||+.+|++.+++....+|+.+ ...++....
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~ 50 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAY 50 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 456788899999999999999999999999999876 334444444
No 116
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=68.51 E-value=12 Score=27.75 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
-|.=+..+|..+...|++++|+.++++|+.+.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 35 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIE 35 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999884
No 117
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.05 E-value=7.2 Score=40.77 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+.|........+++.+|+|+.|++++.+|+.|+|+.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep 149 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP 149 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc
Confidence 4566777788899999999999999999999999954
No 118
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=67.61 E-value=7.4 Score=28.98 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
|.-...+|.-+...|+++.|+++++||++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6667788899999999999999999999875
No 119
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.58 E-value=19 Score=28.67 Aligned_cols=51 Identities=24% Similarity=0.295 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---H-HHHHHHHHhcC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS---V-HEVLAACEKLG 54 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~---~-~~ll~~~~~l~ 54 (352)
|-++..--..+|..++..|+++.|+.-+.+.++-+|+.. + ..||...+.++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 455666788999999999999999999999999999873 3 46888888873
No 120
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=67.50 E-value=10 Score=32.76 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLND 39 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P 39 (352)
|.|.+++..|+.+|+++|+.++-..+.||+.+.-
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~ 62 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIIT 62 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999987654
No 121
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=66.14 E-value=13 Score=39.31 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.|..+.+.+..+++.|++++|++.+.+|+++.|+..
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~ 161 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV 161 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH
Confidence 366788889999999999999999999999999743
No 122
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.06 E-value=13 Score=37.75 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 047551 12 IRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACEK 52 (352)
Q Consensus 12 ~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~ 52 (352)
+++|--+++.+++..|++.|++++.++|+ .+..|-..-..
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A 300 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQA 300 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHH
Confidence 56788889999999999999999999998 55555554443
No 123
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.73 E-value=10 Score=35.73 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+.=..+||++++..||+++|+++++++...|-...
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg 212 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG 212 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Confidence 34467999999999999999999999998887654
No 124
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.88 E-value=14 Score=36.30 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHHHh
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAACEK 52 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~~~ 52 (352)
+..+...++..|+++.|+..+.||+.|||+-+ ...-|.+++.
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 34456677788899999999999999999876 4556666644
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=64.85 E-value=15 Score=33.33 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhCCC
Q 047551 25 QRALKFIKIAQRLNDN 40 (352)
Q Consensus 25 ~~A~kf~~kA~~L~P~ 40 (352)
++|++.+++|++++|+
T Consensus 127 ~~A~~~l~~al~~dP~ 142 (198)
T PRK10370 127 PQTREMIDKALALDAN 142 (198)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 5555555555555554
No 126
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=63.89 E-value=14 Score=31.31 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
|.|.+.+..|+.++.+||++++-.-+.||+.+-
T Consensus 29 dg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii 61 (124)
T TIGR00208 29 NGCLKFIRLAAQAIENDDIERKNENLIKAQNII 61 (124)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998764
No 127
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=63.34 E-value=12 Score=29.41 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 9 LRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 9 ~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.-....|...++.|++++|++.+.+++..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 36 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST 36 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 3457889999999999999999999999999753
No 128
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=63.21 E-value=12 Score=31.30 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
|.|.++++.|..++..||++++...+.||+.+
T Consensus 27 d~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~I 58 (122)
T PF02561_consen 27 DGAIEFLKQAKEAIEQGDIEEKNEALQKAQDI 58 (122)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999875
No 129
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.49 E-value=26 Score=32.98 Aligned_cols=41 Identities=20% Similarity=0.051 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACEK 52 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~ 52 (352)
....|...|+.+.++.|++.|-||+.|.|+- ...|+.....
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAea 177 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEA 177 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHH
Confidence 4456778899999999999999999999993 3344444433
No 130
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=61.81 E-value=17 Score=28.48 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
...+|..+++.|+++.|++.+.+++.++|+.+
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 55678889999999999999999999999864
No 131
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=61.73 E-value=14 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 10 RCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
-...+++-.+..++|+.|+..+.+|+.|.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999874
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=61.70 E-value=17 Score=31.10 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+.-...+|..+...|+++.|+.++.+|++++|...
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 34456677777788888888888888888888654
No 133
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=61.52 E-value=14 Score=32.43 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 12 IRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 12 ~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
++++-.++++++++.|+.-+++=++|+|+++
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 4556666666666666666666666666654
No 134
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=60.08 E-value=19 Score=29.06 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
.+|...+..|+.++..|++.+|..++..|...
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999876
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=59.82 E-value=20 Score=30.59 Aligned_cols=32 Identities=9% Similarity=-0.141 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
....+..++..|+++.|+..+.+|+.++|...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~ 58 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW 58 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 44568889999999999999999999999854
No 136
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=59.70 E-value=11 Score=35.35 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+++.=++..|.-+.+.|+.++|++++++|++++|+.+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3455577788999999999999999999999999854
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=59.19 E-value=27 Score=30.37 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
+..+|..+...|++++|+..+.+|++++|.
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 333344444444555555555555554444
No 138
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.12 E-value=19 Score=28.08 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
..|..++..|.++-++|+++.|+..+.+|+.+.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 457788888899999999999999999998764
No 139
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=58.62 E-value=9.8 Score=28.97 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CHHHHHHHH
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNL-SVHEVLAAC 50 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~-~~~~ll~~~ 50 (352)
++.-+..+|..+++.|++++|+.++.+ ..++|.. ...-++..|
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 444566789999999999999999999 7777765 344444433
No 140
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=58.18 E-value=21 Score=36.58 Aligned_cols=51 Identities=25% Similarity=0.218 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcC
Q 047551 2 DGNKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACEKLG 54 (352)
Q Consensus 2 e~NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~l~ 54 (352)
-.|--|+ .+-.|+.++.+|++..|+--++.+.++.|...+..||.-|+...
T Consensus 325 k~nnaes--~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAe 375 (531)
T COG3898 325 KPNNAES--SLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAE 375 (531)
T ss_pred CccchHH--HHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhc
Confidence 3444444 67789999999999999999999999999988999999887653
No 141
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.67 E-value=24 Score=26.70 Aligned_cols=34 Identities=26% Similarity=0.175 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
.-++|..++..|.++=..|+++.|+..+.+|+++
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578888999999999999999998888777654
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=57.59 E-value=15 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 047551 10 RCIRIAEEAIASGKKQRALKFIKIAQRLND 39 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P 39 (352)
-+..+|..++..+++++|++.+.+++++.|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 355667777777777777777777777665
No 143
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=56.83 E-value=26 Score=27.36 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH-------HHHhhCCCCC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIK-------IAQRLNDNLS 42 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~-------kA~~L~P~~~ 42 (352)
+.|..++..|.++=+.|++..|+..+. ++++++|+.+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 578899999999999999887766555 4556678765
No 144
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=56.22 E-value=23 Score=27.37 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
|-+.|..++.-|.+.-.+|+++.|+.++..|+..+
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45678888888999999999999999888887653
No 145
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=55.95 E-value=21 Score=33.58 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 9 LRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 9 ~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
......|...+..|++++|++.+++.+..+|..+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~ 66 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP 66 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 3455667777777777777777777777777665
No 146
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=55.02 E-value=1.1e+02 Score=32.98 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhh
Q 047551 120 SVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSR 165 (352)
Q Consensus 120 ~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR 165 (352)
..++-.+.|++ ++..+|+..+ +.-.++-..+.+|++.+..+.++
T Consensus 367 ~~deA~~~l~~-al~~~P~~~~-~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 367 KTSEAESVFEH-YIQARASHLP-QSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred CHHHHHHHHHH-HHHhChhhch-hhHHHHHHHHHHHHHhcCCccch
Confidence 34455555655 5668888753 33457888899999999888777
No 147
>PRK11189 lipoprotein NlpI; Provisional
Probab=54.63 E-value=32 Score=32.96 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHH
Q 047551 10 RCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHE 45 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ 45 (352)
-...++..+.+.|++++|+..+.+|++++|..-+..
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 466778889999999999999999999998755543
No 148
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=54.47 E-value=39 Score=29.78 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 047551 10 RCIRIAEEAIASG-KKQRALKFIKIAQRLNDNLSVHEVLAACEK 52 (352)
Q Consensus 10 rc~~iA~~~l~~g-d~~~A~kf~~kA~~L~P~~~~~~ll~~~~~ 52 (352)
..+.+++..+..| +.+.|.-.+-+|+.+||. ..+||.+++.
T Consensus 92 ~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q--P~~LL~iyq~ 133 (148)
T TIGR00985 92 QEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ--PQQLLSIYQQ 133 (148)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 5688999999999 899999999999999999 4457766654
No 149
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.34 E-value=23 Score=27.47 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
..|...+..|.++=+.|+++.|+.++.+|+.+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56778888888889999999998887776543
No 150
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=52.56 E-value=36 Score=34.11 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHhhCCCCCH
Q 047551 2 DGNKDEALRCIRIA---------------EEAIASGKKQRALKFIKIAQRLNDNLSV 43 (352)
Q Consensus 2 e~NkdEA~rc~~iA---------------~~~l~~gd~~~A~kf~~kA~~L~P~~~~ 43 (352)
|+|-+.|+|++..+ +.+.+.|+++.|..++.+|.+.+|+...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~ 153 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQL 153 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH
Confidence 56666777666644 3448899999999999999999999763
No 151
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=52.27 E-value=44 Score=28.67 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.+.-...+|..++..|++++|+..++++++.+|+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 65 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY 65 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 356678889999999999999999999999999854
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=51.90 E-value=37 Score=28.68 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCH
Q 047551 9 LRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSV 43 (352)
Q Consensus 9 ~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~ 43 (352)
.-.+.+|..++..|++++|+..+++++.-.|+...
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence 45677899999999999999999999998877653
No 153
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=51.78 E-value=34 Score=32.31 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=30.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 047551 20 ASGKKQRALKFIKIAQRLNDNLSVHEVLAACEKL 53 (352)
Q Consensus 20 ~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~l 53 (352)
..+++..|+.++++|+.|+|...+...+..|++.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~ 223 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGVKKDIERLERR 223 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 4568899999999999999999999999988776
No 154
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.67 E-value=30 Score=26.16 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
+.|..++..|.+.=..|+++.|+..+..|+.+
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778888888888999999999887777554
No 155
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=50.89 E-value=26 Score=21.01 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 047551 11 CIRIAEEAIASGKKQRALKFIK 32 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~ 32 (352)
.+.+|..++..||++.|++.++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 5678999999999999999875
No 156
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.69 E-value=29 Score=27.04 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 5 KDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 5 kdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
.++|.-.+.-|...-.+|++++|++++..|+.++=.
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 346666677777777889999999999999988643
No 157
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.63 E-value=46 Score=30.47 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCC
Q 047551 3 GNKDEALRCIRIAEEAIAS---------GKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 3 ~NkdEA~rc~~iA~~~l~~---------gd~~~A~kf~~kA~~L~P~~~ 42 (352)
-|+.+|.-|+-+|-..+.. .-|++|..++.||..++|+.+
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4678888888777553221 237899999999999999976
No 158
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=50.32 E-value=24 Score=35.43 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACE 51 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~ 51 (352)
+.=.+-.|+-++..+++++|++.+++++++.|+.....+|..+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~ 371 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL 371 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 33445668899999999999999999999999977644555543
No 159
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.87 E-value=94 Score=32.88 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+-|+....-+..+++.|||..|++.|.+|+..+|+..
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 3455566669999999999999999999999999865
No 160
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=49.82 E-value=25 Score=30.98 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
.|.+-+..|+.+|..|+.++|++.+.+|..+--.
T Consensus 1 ~A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~ 34 (155)
T PF10938_consen 1 RAMRDIQKARLALFQGDTDEAKKLLEDAQGKLDA 34 (155)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999987665
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=48.61 E-value=54 Score=28.21 Aligned_cols=36 Identities=28% Similarity=0.195 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
..|.-...++..+...|++++|+..+.+|+.+.|.+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 68 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP 68 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc
Confidence 345556677777777777777777777777776653
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=48.02 E-value=53 Score=30.82 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HH
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VH 44 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~ 44 (352)
.+.+|..+++.+|++.|+..+++.++++|+.+ ++
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 46889999999999999999999999999987 44
No 163
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.58 E-value=40 Score=25.73 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
+.|..++.-|.+.-..|+++.|+.++..|+.+
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57788888888899999999988877776554
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=46.27 E-value=38 Score=29.43 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
..|.-....|..++..|++++|+..+++|+++.|+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 69 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN 69 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 4555667888899999999999999999999988753
No 165
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=46.05 E-value=34 Score=26.44 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
.+|.-.+..|.+.-.+|+++.|++++..|+.++
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567778888889999999999999999887763
No 166
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=45.65 E-value=46 Score=30.02 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+...+..|..++..|+++.|+..+++++.++|+.+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~ 67 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP 67 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 44567888888888999999999999988888754
No 167
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=44.97 E-value=77 Score=27.74 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCH--HHHHHHHHh
Q 047551 9 LRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSV--HEVLAACEK 52 (352)
Q Consensus 9 ~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~--~~ll~~~~~ 52 (352)
..+..-|+.+|+.|+|++|++.+++...-+|.-+. ...|..+..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~ya 56 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYA 56 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHH
Confidence 46788899999999999999999999999998762 344555444
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=44.77 E-value=37 Score=33.17 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACEKL 53 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~l 53 (352)
|-.+++-|.-+++.++..|+++.|..-|.+|.+|.|+.+ +-++...+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~-~~~~g~aeaL 200 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP-EILLGLAEAL 200 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Confidence 446678899999999999999999999999999999844 3334344443
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=44.62 E-value=52 Score=28.36 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 10 RCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
-...+|..+...|+++.|++.+.+|++++|...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 455666777788999999999999999988754
No 170
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=44.41 E-value=68 Score=25.13 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHH
Q 047551 106 NKDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKV 152 (352)
Q Consensus 106 ~~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I 152 (352)
|.+.-++.|+++.|+..||+.|-++.++++.--..++....++|..-
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~A 48 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAA 48 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHH
Confidence 45566788999999999999997666666533333333445566543
No 171
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=43.95 E-value=42 Score=30.83 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcC
Q 047551 116 ERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLS 160 (352)
Q Consensus 116 ~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLs 160 (352)
+++|+.+||..|+.++..++- +.++.-..|-.||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-------gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-------GDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHH
Confidence 478999999999999988873 34567778999998654
No 172
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=43.92 E-value=55 Score=31.69 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.++..+...|++++|+++++++++++|+..
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 345556666777777777777777766654
No 173
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=43.30 E-value=44 Score=30.16 Aligned_cols=32 Identities=22% Similarity=0.146 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.+.+|..+++.|+++.|+..++++++++|+..
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677888999999999999999999999866
No 174
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.92 E-value=23 Score=36.85 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
|+-...-|.+++..++|+.|+.+|-||++|+|+.-
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca 38 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCA 38 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce
Confidence 44455668889999999999999999999999753
No 175
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=41.87 E-value=2.3e+02 Score=31.13 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
++-.+-+|+..++.|.++.|+.+++.++.++|+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~ 120 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS 120 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH
Confidence 33455668889999999999999999999999975
No 176
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=41.27 E-value=39 Score=28.31 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHhhhhhCCCCCC-CCC----cHHHHHHHHHHHHhcCc
Q 047551 117 RSCSVEEIRKAYRKLSLKVHPDKNK-APG----SEEAFKKVCKAFKCLSD 161 (352)
Q Consensus 117 ~~a~~~eIkkaYrkla~~~HPDk~~-~~~----a~e~f~~I~~Ay~vLsd 161 (352)
+..+..+++.|.|.+-++.|||... .|. -++.++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 3456788999999999999999754 233 34567777777776664
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=40.72 E-value=56 Score=34.44 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=19.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 047551 15 AEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAA 49 (352)
Q Consensus 15 A~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~ 49 (352)
|..++..|++++|...+++|+.|.|+..+..++..
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~ 461 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGK 461 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44445556666666666666666665333333333
No 178
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=39.94 E-value=48 Score=27.13 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLND 39 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P 39 (352)
|-.+|.-|.--|-++.+.|||++|.+.+.+|....-
T Consensus 13 ~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~ 48 (99)
T TIGR00823 13 YAGDARSKALEALKAAKAGDFAKARALVEQAGMCLN 48 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 446788888889999999999999999999987553
No 179
>PRK11189 lipoprotein NlpI; Provisional
Probab=39.78 E-value=55 Score=31.37 Aligned_cols=32 Identities=13% Similarity=-0.082 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 10 RCIRIAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
-....+..+...|+++.|+..+.+|++++|+.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~ 97 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDM 97 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555555555553
No 180
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=39.70 E-value=62 Score=26.72 Aligned_cols=35 Identities=14% Similarity=-0.028 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 047551 5 KDEALRCIRIAEEAIASGKKQRALKFIKIAQRLND 39 (352)
Q Consensus 5 kdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P 39 (352)
-.+|.-|.--|.++.+.|||++|...+.+|....-
T Consensus 17 aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~ 51 (104)
T PRK09591 17 SGNARTEVHEAFAAMREGNFDLAEQKLNQSNEELL 51 (104)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35677788888899999999999999999987543
No 181
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=39.49 E-value=62 Score=31.13 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHH-HHhc
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAA-CEKL 53 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~-~~~l 53 (352)
..++..+..||+..|+.-+.||.++.|+.. +.-++.. ++.+
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 378889999999999999999999999865 4444443 3444
No 182
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=38.95 E-value=55 Score=27.49 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+.|+.++..||.-+|++..++++.-.++..
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 358899999999999999999999999876
No 183
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=38.94 E-value=66 Score=26.21 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLND 39 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P 39 (352)
|-.+|.-|.--|-++.+.|||++|...+.+|....-
T Consensus 11 ~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~ 46 (97)
T cd00215 11 HAGNARSKALEALKAAKEGDFAEAEELLEEANDSLN 46 (97)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 446788888889999999999999999999877543
No 184
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=38.70 E-value=77 Score=31.77 Aligned_cols=43 Identities=19% Similarity=0.100 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLA 48 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~ 48 (352)
..|.+.+.-|.-++..||++.|++.+.++.+..|++....++.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~lla 124 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKA 124 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 4677889999999999999999999999999999866554443
No 185
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=38.42 E-value=81 Score=36.34 Aligned_cols=30 Identities=13% Similarity=-0.015 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.+|..+++.|++++|+..+.++++++|...
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~~P~~~ 637 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTREPGNA 637 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 478888999999999999999999999853
No 186
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=38.23 E-value=36 Score=26.72 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 15 AEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 15 A~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
++++...||+++|.+...+|+.+.
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHHHH
Confidence 577899999999999999998764
No 187
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=38.21 E-value=73 Score=27.24 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
...+|..++..|++++|++.+.++++++|..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 4455666777777777777777777777764
No 188
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.25 E-value=51 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHH
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAAC 50 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~ 50 (352)
.+|--+...|++++|+.+++||+.|.|+.. +.+||..+
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 355566778999999999999999999875 78888765
No 189
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=37.05 E-value=75 Score=31.90 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHHH
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAACE 51 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~~ 51 (352)
|.+=|.=|.++|..++...|.++|+..+.||+..+|+.- +.-+|..+.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 456677788999999999999999999999999999864 555555553
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.59 E-value=73 Score=30.44 Aligned_cols=32 Identities=6% Similarity=-0.073 Sum_probs=20.3
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC
Q 047551 10 RCIRIAEEA-IASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 10 rc~~iA~~~-l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
.....|... ++.|++++|+..+.+.++.||+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s 176 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS 176 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 345555554 45567777777777777777765
No 191
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=36.59 E-value=79 Score=25.62 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
+=.+|.-|.--|-++.+.||+++|...+.+|..-.
T Consensus 10 ~aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l 44 (96)
T PF02255_consen 10 HAGDARSLAMEALKAAREGDFEEAEELLKEADEEL 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34678888888889999999999999999987654
No 192
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=36.28 E-value=44 Score=35.38 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=14.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 14 IAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 14 iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
++..++..|++++|++.+++|+.++|+
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 344445555555555555555555554
No 193
>PRK12370 invasion protein regulator; Provisional
Probab=36.15 E-value=62 Score=33.97 Aligned_cols=32 Identities=9% Similarity=-0.151 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
...+|..++..|++++|+..+++|++++|+..
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 372 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISA 372 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 34445566667777777777777777777643
No 194
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=36.06 E-value=75 Score=33.61 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 9 LRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 9 ~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
...+..|..++..|+++.|+..+.++++++|...
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 56 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDA 56 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCH
Confidence 3466777788888888888888888888887754
No 195
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.88 E-value=58 Score=25.69 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+.-++.+|.-...-|++++|+..+++|+++--...
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 34478899999999999999999999999865443
No 196
>PRK12370 invasion protein regulator; Provisional
Probab=35.29 E-value=56 Score=34.33 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=18.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCC
Q 047551 20 ASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 20 ~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
..+++++|+..+++|++++|+..
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~ 338 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNP 338 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCH
Confidence 45678888888888888888765
No 197
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=34.47 E-value=59 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCc
Q 047551 243 FVFLLQILPFLLIFLLAYLPYSEPDY 268 (352)
Q Consensus 243 ~~~~~qllpil~l~~~~~~~~~~P~y 268 (352)
.+.|+.|+.-|+|+++.+|....|.|
T Consensus 14 ~~~lLiliis~~f~lI~~l~qq~~~y 39 (61)
T PF06692_consen 14 SGPLLILIISFVFFLITSLGQQGNTY 39 (61)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCee
Confidence 34555555556666677777777766
No 198
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=34.01 E-value=1.2e+02 Score=19.95 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 047551 10 RCIRIAEEAIASGKKQRALKF--IKIAQRLNDN 40 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf--~~kA~~L~P~ 40 (352)
-+..+|-.....|++++|+++ +.-+..|+|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 356678889999999999999 5588888774
No 199
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.95 E-value=70 Score=33.74 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHH-Hhc
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAAC-EKL 53 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~-~~l 53 (352)
|.|.+++|.+++..|||.=|...+++|.-.+|... +++|.+-+ +.|
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQL 499 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQL 499 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHh
Confidence 67899999999999999999999999999999876 67776644 444
No 200
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.48 E-value=77 Score=27.88 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHHHh
Q 047551 12 IRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAACEK 52 (352)
Q Consensus 12 ~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~~~ 52 (352)
--+|..+.+-++|++|+++++.-++.+|+.+ +..|-..++.
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied 116 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIED 116 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 3478888899999999999999999999865 6666666543
No 201
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=32.67 E-value=54 Score=24.73 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 047551 13 RIAEEAIASGKKQRALKFIKIA 34 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA 34 (352)
-+|+.+++.|++++|++.+++|
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 4599999999999999999986
No 202
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=31.46 E-value=82 Score=31.22 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--HHHHHHHHHhc
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDNLS--VHEVLAACEKL 53 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~--~~~ll~~~~~l 53 (352)
..|..++++|.+..|+.++.+++.++|-.+ -..|+..+..+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~ 326 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATL 326 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh
Confidence 357789999999999999999999999876 35666666665
No 203
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=31.36 E-value=51 Score=37.49 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHH
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAA 49 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~ 49 (352)
+.-+++-|+.+|..++|+.|++.++|+++.+|+.- +.-.|-+
T Consensus 2 vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGv 44 (1238)
T KOG1127|consen 2 VKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGV 44 (1238)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence 45678899999999999999999999999999864 5544443
No 204
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=71 Score=27.45 Aligned_cols=50 Identities=32% Similarity=0.306 Sum_probs=37.6
Q ss_pred hhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCch
Q 047551 110 YAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDD 162 (352)
Q Consensus 110 Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~ 162 (352)
-.||+|+...+.++|-+.|-.|=....+.|. |..-.--+|-.|.+.|-..
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskG---GSFYLQSKVfRAkErld~E 111 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKG---GSFYLQSKVFRAKERLDEE 111 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccC---cceeehHHHHHHHHHHHHH
Confidence 3689999999999999999999888887776 3333334566677766533
No 205
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=30.97 E-value=91 Score=24.71 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQ 35 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~ 35 (352)
.+|.+.+|+.|..+||.-.|..++.=|-
T Consensus 39 ~EKY~~LArDA~ssGDrV~aEny~QHAe 66 (80)
T PF13763_consen 39 IEKYNQLARDAQSSGDRVLAENYLQHAE 66 (80)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4799999999999999999999887664
No 206
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.89 E-value=55 Score=19.28 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 047551 22 GKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 22 gd~~~A~kf~~kA~~L~P~~ 41 (352)
|+.+.|+..++++++.+|..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~ 20 (33)
T smart00386 1 GDIERARKIYERALEKFPKS 20 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999953
No 207
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=30.51 E-value=1.2e+02 Score=32.09 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCC-HHHHHHHHH
Q 047551 6 DEALRCIRIAEEAIASGK---KQRALKFIKIAQRLNDNLS-VHEVLAACE 51 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd---~~~A~kf~~kA~~L~P~~~-~~~ll~~~~ 51 (352)
-+|.-|.-.|..++..++ +.+|+.++++|++++|+.. +...|..+.
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~ 386 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALAD 386 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 378888888999888766 7899999999999999975 455554443
No 208
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=30.45 E-value=1.4e+02 Score=32.83 Aligned_cols=27 Identities=11% Similarity=-0.102 Sum_probs=13.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 14 IAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 14 iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
.|...+..|++++|+..+++++.+.|.
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344444445555555555555555554
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=30.24 E-value=1.3e+02 Score=27.01 Aligned_cols=37 Identities=16% Similarity=-0.001 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.-|++-+.||+=+++.|.+..|+.-++..++-||+..
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 4577889999999999999999999999999999987
No 210
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=30.24 E-value=1.2e+02 Score=27.01 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 9 LRCIRIAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 9 ~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
+..-.+|-..+..|+++.|.++++-...++|..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~ 68 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS 68 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 345555666666666666666666666666653
No 211
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=30.14 E-value=90 Score=29.12 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.+|..++.-|++++|+.+++++.+..|+.+
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHhcccccccccccccccccccccccc
Confidence 456777888999999999999999999855
No 212
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=30.10 E-value=1.2e+02 Score=34.10 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHH
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAAC 50 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~ 50 (352)
|....+..|...+..||++.|.+.|.++++.+|... +...|..|
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~I 182 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEI 182 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 567888999999999999999999999999999876 44555544
No 213
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=30.07 E-value=81 Score=29.97 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
+..+|-+++..|-..++..+++.|+..+++|..+|-..
T Consensus 70 ~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 70 DKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhc
Confidence 55677778777888888888888888888888887544
No 214
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=29.77 E-value=1.4e+02 Score=32.78 Aligned_cols=28 Identities=25% Similarity=0.080 Sum_probs=19.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 14 IAEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 14 iA~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
+|..+...|++++|++.+++|+.++|+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 4556667777777777777777777764
No 215
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.76 E-value=87 Score=33.11 Aligned_cols=48 Identities=21% Similarity=0.128 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACEK 52 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~ 52 (352)
|.++|.-.-..|-.+++-|++..|++.|+++++|+|+ -+..++.+...
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a 435 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA 435 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH
Confidence 3455655667888899999999999999999999998 34445554433
No 216
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.70 E-value=72 Score=30.71 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 3 GNKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 3 ~NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
++|++|--|.-.|-++++..|.+.|.+-+++|+.+|-+..
T Consensus 68 ~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 68 GSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred CCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhh
Confidence 4788888899899999999999999999999999998754
No 217
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.57 E-value=80 Score=29.26 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=26.4
Q ss_pred CCHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 3 GNKDEALRC-------IRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 3 ~NkdEA~rc-------~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
.+||||.+. -..|-.++..||++.|.++++||-++
T Consensus 17 ~~REE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~ 58 (204)
T COG2178 17 KAREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEA 58 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467777653 23456678999999999999998754
No 218
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.21 E-value=32 Score=29.13 Aligned_cols=7 Identities=14% Similarity=0.392 Sum_probs=3.3
Q ss_pred Cceeecc
Q 047551 286 GIEFYVK 292 (352)
Q Consensus 286 ~v~yyV~ 292 (352)
...||=.
T Consensus 74 ~~g~Yd~ 80 (130)
T PF12273_consen 74 DPGYYDQ 80 (130)
T ss_pred CCCCCCC
Confidence 3445544
No 219
>PF15469 Sec5: Exocyst complex component Sec5
Probab=29.13 E-value=49 Score=29.40 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=24.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047551 15 AEEAIASGKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 15 A~~~l~~gd~~~A~kf~~kA~~L~P~~ 41 (352)
-+++++.|||+.|++.|.||..++-..
T Consensus 93 L~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999765
No 220
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.27 E-value=37 Score=36.58 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHH
Q 047551 2 DGNKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVL 47 (352)
Q Consensus 2 e~NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll 47 (352)
+.+++-.+-|..++.-+=-++|.+.|+++.++|+.|||+.. +..|+
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLl 461 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLL 461 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhc
Confidence 34455555566677777778999999999999999999866 44343
No 221
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=28.12 E-value=1.2e+02 Score=34.56 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=15.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 047551 20 ASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 20 ~~gd~~~A~kf~~kA~~L~P~ 40 (352)
..|+++.|+..+.+|++++|+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC
Confidence 337777777777777777775
No 222
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=28.10 E-value=90 Score=23.26 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 10 RCIRIAEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
+....|..+=.+||.++|++|+.-+..+++-
T Consensus 10 ~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~ 40 (59)
T smart00685 10 QYKQAALQAKRAGDEEKARRHLRIAKQFDDA 40 (59)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhHHHH
Confidence 4566788888999999999999999877654
No 223
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=27.85 E-value=98 Score=25.88 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 047551 10 RCIRIAEEAIASGKKQRALKFIK 32 (352)
Q Consensus 10 rc~~iA~~~l~~gd~~~A~kf~~ 32 (352)
-+.+.|++.+..|+++.|++++.
T Consensus 72 ~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 72 LLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 48899999999999999999987
No 224
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=27.80 E-value=96 Score=26.16 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLN 38 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~ 38 (352)
|-.+|.-|.--|-.+.+.|||++|.+.+.+|....
T Consensus 27 ~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l 61 (115)
T PRK10454 27 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMAL 61 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567777778888899999999999999998754
No 225
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=27.21 E-value=1e+02 Score=25.85 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 047551 4 NKDEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACE 51 (352)
Q Consensus 4 NkdEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~ 51 (352)
|-+|+...|.+ -..+..|+|+.|+.+.+.. |.+++.-+++.|+
T Consensus 36 ~~~E~v~lIRl-sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce 78 (115)
T TIGR02508 36 ESEEAVQLIRL-SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE 78 (115)
T ss_pred chHHHHHHHHH-HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH
Confidence 33565555543 3579999999999998876 3444555666664
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=27.06 E-value=95 Score=29.83 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.+.+|-.+++.++++.|+-.+++=++++|+.+
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 56778888999999999999999999999876
No 227
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=26.75 E-value=1.1e+02 Score=29.66 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+..+|..++..|++++|++.+.++++++|+..
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 45567777778888888888888888877643
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=26.44 E-value=1.9e+02 Score=27.84 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCH--HHHHHHH
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSV--HEVLAAC 50 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~--~~ll~~~ 50 (352)
.+..+-+-+...|+.||+++|.+.+++..+-+|..+. ..+|..+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~ 78 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLA 78 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHH
Confidence 3667888899999999999999999999999998772 3344444
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=26.44 E-value=1.1e+02 Score=31.95 Aligned_cols=46 Identities=20% Similarity=0.067 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 047551 6 DEALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACE 51 (352)
Q Consensus 6 dEA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~ 51 (352)
..|.-..-.|--.+-+|+.+.|++.+++|++|.|.-....+++.|-
T Consensus 370 n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 370 DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 3444455556666778888889999999999988865555666554
No 230
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=26.15 E-value=75 Score=30.54 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+++-+-.++-.+.+.|+++.|+.-+.+|++|+|+.+
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 444455667788899999999999999999999876
No 231
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.10 E-value=1.7e+02 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACE 51 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~ 51 (352)
-+.+.|..+.+|+.+++...+..|+.++|. ..+||.+++
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgq--paqLL~vlq 122 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQ--PAQLLQVLQ 122 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCC--HHHHHHHHH
Confidence 468899999999999999999999999998 455777664
No 232
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=25.90 E-value=1.3e+02 Score=18.35 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=20.8
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHhh
Q 047551 11 CIRIAEEAIAS----GKKQRALKFIKIAQRL 37 (352)
Q Consensus 11 c~~iA~~~l~~----gd~~~A~kf~~kA~~L 37 (352)
|..+|.-++.. .|..+|++++.+|-..
T Consensus 4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 67777776643 3899999999998764
No 233
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.10 E-value=97 Score=29.59 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=25.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 14 IAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 14 iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+.--++++|+++.|...+.+|++++|+.+
T Consensus 145 ~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 145 LGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred hHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 44557999999999999999999999966
No 234
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.88 E-value=6.1e+02 Score=24.13 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=11.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Q 047551 15 AEEAIASGKKQRALKFIKIAQRLNDN 40 (352)
Q Consensus 15 A~~~l~~gd~~~A~kf~~kA~~L~P~ 40 (352)
|..++..|++++|+..+.+++..||.
T Consensus 187 G~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 187 GQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 44444444444444444444444443
No 235
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=24.54 E-value=88 Score=35.73 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-HHHHHHHH
Q 047551 12 IRIAEEAIASGKKQRALKFIKIAQRLNDNLS-VHEVLAAC 50 (352)
Q Consensus 12 ~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~-~~~ll~~~ 50 (352)
..+|+.++..|++++|+..++||++++|+.. ...+|..+
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i 121 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh
Confidence 6678888999999999999999999999644 33344443
No 236
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.52 E-value=1.3e+02 Score=31.81 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 047551 12 IRIAEEAIASGKKQRALKFIKIAQRLNDNLSVHEVLAACEKL 53 (352)
Q Consensus 12 ~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~~~~ll~~~~~l 53 (352)
.=+|.-+...|++++|+.++++|+...||. ++-++.+...+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~Karil 238 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Confidence 345777888999999999999999999995 44444444443
No 237
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=24.24 E-value=1.3e+02 Score=21.11 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=32.1
Q ss_pred HHHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhccc
Q 047551 125 RKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHV 171 (352)
Q Consensus 125 kkaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~ 171 (352)
.+.+++..+.-||+. ...+..+.|...|..|++.++....+..
T Consensus 12 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGL----SVGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566667788883 4678899999999999987776665543
No 238
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=24.18 E-value=1.2e+02 Score=32.77 Aligned_cols=32 Identities=13% Similarity=-0.009 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
...+|..++..|+++.|+..+.+|++++|...
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~ 144 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSGNS 144 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 45556777888888888888888888888754
No 239
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=24.13 E-value=1.2e+02 Score=30.41 Aligned_cols=42 Identities=12% Similarity=0.016 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCCH-HHHHHHHHhc
Q 047551 12 IRIAEEAIASGKKQRALKFIK--IAQRLNDNLSV-HEVLAACEKL 53 (352)
Q Consensus 12 ~~iA~~~l~~gd~~~A~kf~~--kA~~L~P~~~~-~~ll~~~~~l 53 (352)
..++.-+++.|++++|+++++ ++.++.|+..+ ..|...+..+
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 356778899999999999999 57778898764 3343344444
No 240
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=23.74 E-value=71 Score=30.37 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 047551 12 IRIAEEAIAS-GKKQRALKFIKIAQRLNDNL 41 (352)
Q Consensus 12 ~~iA~~~l~~-gd~~~A~kf~~kA~~L~P~~ 41 (352)
.++|+-+-.. ||+++|+.++.+|..+|...
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 3344444444 56666666666666666543
No 241
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=23.10 E-value=1.2e+02 Score=21.05 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.8
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 047551 15 AEEAIASGKKQRALKFIKIA 34 (352)
Q Consensus 15 A~~~l~~gd~~~A~kf~~kA 34 (352)
-...+..||++.|++++.+-
T Consensus 8 i~~~i~~g~~~~a~~~~~~~ 27 (58)
T smart00668 8 IRELILKGDWDEALEWLSSL 27 (58)
T ss_pred HHHHHHcCCHHHHHHHHHHc
Confidence 46789999999999998654
No 242
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.05 E-value=97 Score=33.30 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047551 8 ALRCIRIAEEAIASGKKQRALKFIKIAQRL 37 (352)
Q Consensus 8 A~rc~~iA~~~l~~gd~~~A~kf~~kA~~L 37 (352)
=+-|...|+..+..|+|..|++.+++|+++
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 356889999999999999999999999555
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=22.81 E-value=1.3e+02 Score=28.69 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 047551 8 ALRCIRIAEEAIASG-KKQRALKFIKIAQRLN 38 (352)
Q Consensus 8 A~rc~~iA~~~l~~g-d~~~A~kf~~kA~~L~ 38 (352)
|.-|.+++...++.+ +++.|.+|+.+|..+.
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 567899999999999 9999999999999984
No 244
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.80 E-value=3.1e+02 Score=21.61 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCchhhcCcCCCCCHHHHHHHHHHhhhhhCCCCCCCCCcHHHHHH
Q 047551 107 KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKK 151 (352)
Q Consensus 107 ~d~Y~iLgv~~~a~~~eIkkaYrkla~~~HPDk~~~~~a~e~f~~ 151 (352)
.|--.+-|+.|.+|++||..|=.+.++|..=-..++....++|-.
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 444456688999999999999777777665444333444555544
No 245
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=22.03 E-value=1.5e+02 Score=22.02 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=31.8
Q ss_pred HHHHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhccc
Q 047551 126 KAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHV 171 (352)
Q Consensus 126 kaYrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~ 171 (352)
+..|.....-||+. ...+..+.|.+.|..|++.++...+|..
T Consensus 14 ~~~r~~~~~~~p~~----~~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 14 KRHRRKVLQEYPLK----ENRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455556678874 4678899999999999999887766654
No 246
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.86 E-value=57 Score=27.28 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 047551 245 FLLQILPFLLIFLLAYL 261 (352)
Q Consensus 245 ~~~qllpil~l~~~~~~ 261 (352)
.++.++|+++++++.+|
T Consensus 3 ~~~~ll~lv~i~~i~yF 19 (109)
T PRK05886 3 SLVLFLPFLLIMGGFMY 19 (109)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45666777666554433
No 247
>PRK10316 hypothetical protein; Provisional
Probab=21.82 E-value=1.5e+02 Score=27.72 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 7 EALRCIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 7 EA~rc~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
-|.|=|.+|+.+|-.|+.+.|++++..|+.+.-...
T Consensus 53 ~A~~DI~~AR~Alf~G~~~~Ak~ll~~A~~~l~~a~ 88 (209)
T PRK10316 53 YAMRDVQVARLALFHGDPEKAKELTNQASALLSDDS 88 (209)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Confidence 467889999999999999999999999998876654
No 248
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.79 E-value=58 Score=26.96 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 047551 245 FLLQILPFLLIFLLAYL 261 (352)
Q Consensus 245 ~~~qllpil~l~~~~~~ 261 (352)
++++++|+++++++.++
T Consensus 17 ~~~~ll~lvii~~i~yf 33 (106)
T PRK05585 17 GLSSLLPLVVFFAIFYF 33 (106)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 46777787777766544
No 249
>PRK14574 hmsH outer membrane protein; Provisional
Probab=21.76 E-value=2.1e+02 Score=32.07 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=25.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 14 IAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 14 iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.|..+...|++++|+..++++++++|+.+
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~ 136 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNP 136 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 36677788999999999999999999864
No 250
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.24 E-value=1.4e+02 Score=21.19 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=29.5
Q ss_pred HHHhhhhhCCCCCCCCCcHHHHHHHHHHHHhcCchhhhhhhccc
Q 047551 128 YRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDDSRRHYDHV 171 (352)
Q Consensus 128 Yrkla~~~HPDk~~~~~a~e~f~~I~~Ay~vLsd~~kR~~YD~~ 171 (352)
.|.....-||+. ...+..+.|.+.|..|++.++....+..
T Consensus 15 ~r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344445568873 4678999999999999988877665554
No 251
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=21.01 E-value=1.8e+02 Score=33.53 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 13 RIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 13 ~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
.+|..++..|++++|++.+++|++++|+..
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~ 495 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSV 495 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 356667788888999999999998888753
No 252
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=20.54 E-value=1.5e+02 Score=28.64 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 047551 11 CIRIAEEAIASGKKQRALKFIKIAQRLNDNLS 42 (352)
Q Consensus 11 c~~iA~~~l~~gd~~~A~kf~~kA~~L~P~~~ 42 (352)
+.-+|...|..|++++|.+.+.+|+..+|..+
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 45678899999999999999999999999843
No 253
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.33 E-value=70 Score=26.18 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC
Q 047551 245 FLLQILPFLLIFLLAYLPYSEP 266 (352)
Q Consensus 245 ~~~qllpil~l~~~~~~~~~~P 266 (352)
.+..++|+++++++.+|....|
T Consensus 8 ~~~~ll~~vl~~~ifyFli~RP 29 (97)
T COG1862 8 GLVLLLPLVLIFAIFYFLIIRP 29 (97)
T ss_pred cHHHHHHHHHHHHHHHHhhcCH
Confidence 4666777777777666544444
Done!