BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047553
(377 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 213 ELKIRHLVSRLLDMGFSTNS-RMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMF 271
E I+ ++ L D+G N F+ + + E ++ S FSK +V QM
Sbjct: 185 EKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMV 244
Query: 272 RKAPLILKASEERLQLGLEFFLKEIECE----KSVLVRIPICLACSIE 315
RKAP +L S ERL L FF KE+E + ++VR+P L S+E
Sbjct: 245 RKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE 292
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 213 ELKIRHLVSRLLDMGFSTNS-RMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMF 271
E I+ ++ L D+G N F+ + + E ++ +S FSK ++ +M
Sbjct: 180 EKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIARMV 239
Query: 272 RKAPLILKASEERLQLGLEFFLKEIECE----KSVLVRIPICLACSIE 315
+ AP +L S ERL L FF KE+E + ++VR+P L S+E
Sbjct: 240 KNAPFLLSFSVERLDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSLE 287
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 44 KTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDK 103
+ + I LPIS+ F+ ++ +T+++ + +G + I+ + +L D +K
Sbjct: 124 EAIQIAAYSPLPISS-FTLADYVDHSKTLQKLVQ-LGVDLSKIEKHPDAANLLLRLDFEK 181
Query: 104 TLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLE 138
+K + F + LGL + LG F++KN ++F+ LE
Sbjct: 182 HIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLE 216
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 213 ELKIRHLVSRLLDMGFSTNS-RMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMF 271
E I+ ++ L D+G N F+ + + E ++ +S FSK ++ M
Sbjct: 177 EKDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIACMV 236
Query: 272 RKAPLILKASEERLQLGLEFFLKEIECE----KSVLVRIPICLACSIE 315
+ AP +L S ERL L FF KE+E + ++VR+P L S+E
Sbjct: 237 KNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE 284
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 45/280 (16%)
Query: 70 ETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKN 129
ET+ + +H +G + ++ + +L D +K + + F + +G+ + LG F++KN
Sbjct: 142 ETLTKLVH-LGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKN 200
Query: 130 PSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLK 189
P + LE L V LK N ++T++ R + L+ E+ L + + K
Sbjct: 201 PYILGEELE-ALETRVAYLKS---KKFGNAEITQMVSRAPYLLLFSVER--LDNRLGFFK 254
Query: 190 S-CGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEE 248
+ G+ + L++ PRL K ++ + C E
Sbjct: 255 NELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQ---------------------VCQVE- 292
Query: 249 TFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPI 308
+GF + EV Q+ K P IL AS++RL+ ++ + ++L R P
Sbjct: 293 -----------FGFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNIMGIPHNMLTRFPQ 341
Query: 309 CLACSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSE 348
+ R+ R+ +F I + R + D + PS + L +
Sbjct: 342 VFNSKL-LRIKERH-MFLIFLGRAQY--DPTKPSYISLDQ 377
>sp|P42841|PFS2_YEAST Polyadenylation factor subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PFS2 PE=1 SV=1
Length = 465
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 193 IVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFV 236
I G M+ +WQP KE+ H S + DM FS+N FV
Sbjct: 151 ISGDADGMIKIWQPNFSMVKEIDAAHTES-IRDMAFSSNDSKFV 193
>sp|A8GS50|GPDA_RICRS Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Rickettsia
rickettsii (strain Sheila Smith) GN=gpsA PE=3 SV=1
Length = 338
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 34/226 (15%)
Query: 93 RPTILFSDVDKTLKPK--IEFFQHLGLVGSDLGKFISKN--PSLFAASLERKLIPCVEIL 148
PT LFSD KTL P FF VG +L K ++KN S ASL+ ++I
Sbjct: 114 NPTTLFSDRLKTLLPHSPTAFF-----VGPNLAKELAKNLPASASIASLD------IDIA 162
Query: 149 KKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRL 208
KI + S +++F + I+ + +G L+NI +KS G L+ R
Sbjct: 163 NKIAYNLS-----SKIFTTNVSSDIVTLQVAGALKNIFAIKS----GIDLARKQGENARA 213
Query: 209 -FCYKELKIRHLVSRLLDMGFSTNSRMFVYGLV---VLSCLNEETFGRKLELFRSYGFSK 264
LK ++S+ L G NS + + G+V VL+C + + K K
Sbjct: 214 TLIVAALKEIAILSKALG-GMQKNSDILLEGVVGDLVLTCYSLGSRNTKFGYELGISSDK 272
Query: 265 EEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICL 310
++ LQ +++ L E L+L L+ +K+ ++ + C+
Sbjct: 273 KQFLQEYKE----LVEGREALKLVLD-LIKKYNLHMPIISEVASCV 313
>sp|B0BXL6|GPDA_RICRO Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Rickettsia
rickettsii (strain Iowa) GN=gpsA PE=3 SV=1
Length = 338
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 34/226 (15%)
Query: 93 RPTILFSDVDKTLKPK--IEFFQHLGLVGSDLGKFISKN--PSLFAASLERKLIPCVEIL 148
PT LFSD KTL P FF VG +L K ++KN S ASL+ ++I
Sbjct: 114 NPTTLFSDRLKTLLPHSPTAFF-----VGPNLAKELAKNLPASASIASLD------IDIA 162
Query: 149 KKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRL 208
KI + S +++F + I+ + +G L+NI +KS G L+ R
Sbjct: 163 NKIAYNLS-----SKIFTTNVSSDIVTLQVAGALKNIFAIKS----GIDLARKQGENARA 213
Query: 209 -FCYKELKIRHLVSRLLDMGFSTNSRMFVYGLV---VLSCLNEETFGRKLELFRSYGFSK 264
LK ++S+ L G NS + + G+V VL+C + + K K
Sbjct: 214 TLIVAALKEIAILSKALG-GMQKNSDILLEGVVGDLVLTCYSLGSRNTKFGYELGISSDK 272
Query: 265 EEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICL 310
++ LQ +++ L E L+L L+ +K+ ++ + C+
Sbjct: 273 KQFLQEYKE----LVEGREALKLVLD-LIKKYNLHMPIISEVASCV 313
>sp|C3PNH2|GPDA_RICAE Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Rickettsia africae
(strain ESF-5) GN=gpsA PE=3 SV=1
Length = 325
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 34/226 (15%)
Query: 93 RPTILFSDVDKTLKP--KIEFFQHLGLVGSDLGKFISKN--PSLFAASLERKLIPCVEIL 148
PT LFSD KTL P FF VG +L K ++KN S ASL+ ++I
Sbjct: 114 NPTALFSDRLKTLLPYNPTAFF-----VGPNLAKELAKNLPASASIASLD------IDIA 162
Query: 149 KKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRL 208
KI + S +++F + I+ + +G L+NI +KS G L+ R
Sbjct: 163 NKIAYNLS-----SKIFTTNVSSDIVTLQVAGALKNIFAIKS----GIDLARKQGENARA 213
Query: 209 -FCYKELKIRHLVSRLLDMGFSTNSRMFVYGLV---VLSCLNEETFGRKLELFRSYGFSK 264
LK ++S+ L G NS + + G+V VL+C + + K K
Sbjct: 214 TLIVAALKEIAILSKALG-GMQKNSDILLEGVVGDLVLTCYSLGSRNTKFGYELGISSDK 272
Query: 265 EEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICL 310
++ LQ +++ L E L+L L+ +K+ ++ + C+
Sbjct: 273 QKFLQEYKE----LVEGREALKLVLD-LIKKYNLHMPIISEVASCV 313
>sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT
PE=1 SV=2
Length = 357
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 103 KTLKPKIEFFQHLGLVGSDLGKFI-----SKNPSLFAASLERKLIPCVEILKKILVDDSN 157
K K F HL DL + SKN + FA + + P IL K ++ D +
Sbjct: 205 KVAKAIANAFPHLNCTVLDLSHVVAGLQGSKNLNYFAGDMFEAIPPADAILLKWILHDWS 264
Query: 158 NEDLTRVFRRC 168
NE+ ++ +RC
Sbjct: 265 NEECVKILKRC 275
>sp|B0KBQ5|PURL_THEP3 Phosphoribosylformylglycinamidine synthase 2 OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=purL PE=3
SV=1
Length = 733
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 125 FISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRN 184
+S N SL+ + E + P I L++D + + T F++ +I+ E G +
Sbjct: 522 VVSGNVSLYNENEEGAIYPTPVIGMAGLIEDVS-KICTMDFKKERDVIIILGENKGEIGG 580
Query: 185 IEYLKSC-GIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLS 243
EYLK C G+V Q P++ +E +++ LV +L+D G +S G +
Sbjct: 581 SEYLKVCFGMVKGQ-------PPQIDLEEEKRLQELVLKLIDKGLINSSHDISEGGFAAA 633
Query: 244 CLNEETFGRKLELFRSYGFSKEEVLQMFRKAP--LILKASEERLQ 286
+ G+K S S E +++F ++P ++ S E+++
Sbjct: 634 LVESAISGKKGAKI-SLQTSLREDIELFSESPPRALITVSPEKVE 677
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,145,833
Number of Sequences: 539616
Number of extensions: 5190738
Number of successful extensions: 14474
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14459
Number of HSP's gapped (non-prelim): 24
length of query: 377
length of database: 191,569,459
effective HSP length: 119
effective length of query: 258
effective length of database: 127,355,155
effective search space: 32857629990
effective search space used: 32857629990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)