Query 047553
Match_columns 377
No_of_seqs 203 out of 1243
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 21:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 3.5E-53 1.2E-57 410.0 19.2 310 32-357 16-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 2E-48 6.7E-53 364.9 13.6 257 70-367 6-267 (270)
3 3mva_O Transcription terminati 100.0 1.4E-38 4.7E-43 307.7 14.3 303 4-323 21-340 (343)
4 4fp9_B Mterf domain-containing 100.0 2.4E-36 8.1E-41 288.5 15.9 222 105-371 46-275 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 3.2E-34 1.1E-38 268.4 12.6 213 36-294 6-224 (270)
6 4fp9_B Mterf domain-containing 99.9 1.5E-27 5.2E-32 227.7 14.8 181 68-298 45-227 (335)
7 4fzv_B Mterf domain-containing 99.4 2E-12 6.9E-17 105.9 13.4 181 141-362 33-221 (239)
8 4fzv_B Mterf domain-containing 98.8 6.5E-08 2.2E-12 79.3 11.3 149 104-298 32-182 (239)
9 1oqy_A HHR23A, UV excision rep 90.3 1.1 3.9E-05 42.6 9.3 14 121-134 248-261 (368)
10 4ae4_A Ubiquitin-associated pr 89.7 1.7 5.7E-05 34.4 8.3 99 36-150 9-113 (118)
11 3ff5_A PEX14P, peroxisomal bio 86.2 1.4 4.6E-05 29.7 4.8 33 59-92 21-53 (54)
12 1oqy_A HHR23A, UV excision rep 86.1 0.45 1.5E-05 45.4 3.5 152 35-206 168-350 (368)
13 3ff5_A PEX14P, peroxisomal bio 85.8 0.81 2.8E-05 30.8 3.6 35 90-128 19-53 (54)
14 4ae4_A Ubiquitin-associated pr 84.6 1.8 6.2E-05 34.1 5.8 98 182-296 9-115 (118)
15 2w84_A Peroxisomal membrane pr 80.5 3.3 0.00011 29.3 5.2 34 59-93 26-59 (70)
16 2w84_A Peroxisomal membrane pr 75.8 4.3 0.00015 28.7 4.6 27 248-274 33-59 (70)
17 2ekk_A UBA domain from E3 ubiq 70.1 7.1 0.00024 25.1 4.4 42 30-78 4-45 (47)
18 1ify_A HHR23A, UV excision rep 67.6 7.6 0.00026 25.3 4.2 40 248-294 6-45 (49)
19 2dak_A Ubiquitin carboxyl-term 66.1 10 0.00035 26.0 4.8 44 29-78 3-46 (63)
20 3ugm_A TAL effector avrbs3/PTH 61.4 1.8 6.2E-05 44.2 0.2 16 114-129 489-504 (1047)
21 2ooa_A E3 ubiquitin-protein li 61.0 7.9 0.00027 25.6 3.1 25 249-273 10-34 (52)
22 2g3q_A Protein YBL047C; endocy 59.8 7.5 0.00026 24.4 2.9 23 252-274 6-28 (43)
23 2oo9_A E3 ubiquitin-protein li 58.4 13 0.00043 23.9 3.6 25 249-273 3-27 (46)
24 1z96_A DNA-damage, UBA-domain 58.1 13 0.00043 22.6 3.7 24 251-274 5-28 (40)
25 2knz_A Ubiquilin-4; cytoplasm, 55.3 13 0.00043 24.6 3.6 27 247-273 8-35 (53)
26 1whc_A RSGI RUH-027, UBA/UBX 3 53.1 36 0.0012 23.3 5.8 44 31-79 5-48 (64)
27 2juj_A E3 ubiquitin-protein li 51.2 17 0.00057 24.3 3.5 26 248-273 5-30 (56)
28 2d9s_A CBL E3 ubiquitin protei 50.4 17 0.00059 24.1 3.5 24 250-273 9-32 (53)
29 1wji_A Tudor domain containing 50.2 15 0.00052 25.3 3.4 38 251-295 10-47 (63)
30 1vg5_A RSGI RUH-014, rhomboid 48.5 13 0.00046 26.4 3.0 39 249-294 28-66 (73)
31 2lbc_A Ubiquitin carboxyl-term 45.3 38 0.0013 26.5 5.6 41 34-79 2-42 (126)
32 2crn_A Ubash3A protein; compac 44.5 41 0.0014 23.1 5.0 43 33-80 7-49 (64)
33 1wgn_A UBAP1, ubiquitin associ 44.3 29 0.00098 23.8 3.9 39 251-296 20-58 (63)
34 2jy5_A Ubiquilin-1; UBA, alter 43.7 19 0.00065 23.7 3.0 25 249-273 11-36 (52)
35 2dak_A Ubiquitin carboxyl-term 43.3 23 0.00078 24.2 3.5 39 251-296 10-48 (63)
36 1wiv_A UBP14, ubiquitin-specif 43.1 22 0.00076 25.2 3.5 38 251-295 30-67 (73)
37 1veg_A NEDD8 ultimate buster-1 43.1 22 0.00075 26.0 3.4 40 251-297 30-69 (83)
38 2cos_A Serine/threonine protei 42.2 32 0.0011 22.9 3.8 45 33-82 7-51 (54)
39 1wji_A Tudor domain containing 41.2 66 0.0023 21.9 5.6 40 34-79 8-47 (63)
40 2xvc_A ESCRT-III, SSO0910; cel 40.9 81 0.0028 21.2 5.8 46 262-334 10-55 (59)
41 1wgn_A UBAP1, ubiquitin associ 40.3 23 0.00078 24.3 2.9 35 39-79 23-57 (63)
42 1uxc_A FRUR (1-57), fructose r 38.3 22 0.00074 24.5 2.7 44 189-232 8-51 (65)
43 2knz_A Ubiquilin-4; cytoplasm, 37.0 74 0.0025 20.7 5.1 10 72-81 14-23 (53)
44 2l8n_A Transcriptional repress 36.7 40 0.0014 23.2 3.9 42 188-232 16-57 (67)
45 1wiv_A UBP14, ubiquitin-specif 36.6 62 0.0021 22.8 5.0 41 33-79 27-67 (73)
46 1dv0_A DNA repair protein HHR2 35.7 12 0.00042 24.0 1.0 23 252-274 6-28 (47)
47 2bwb_A Ubiquitin-like protein 35.2 46 0.0016 21.1 3.7 25 248-272 5-30 (46)
48 2cpw_A CBL-interacting protein 33.5 67 0.0023 22.0 4.6 42 34-80 18-59 (64)
49 1vg5_A RSGI RUH-014, rhomboid 32.2 82 0.0028 22.3 5.0 37 36-78 30-66 (73)
50 2dag_A Ubiquitin carboxyl-term 31.1 37 0.0013 24.1 3.0 40 252-297 11-50 (74)
51 2ooa_A E3 ubiquitin-protein li 30.1 99 0.0034 20.3 4.6 38 37-80 13-50 (52)
52 1wj7_A Hypothetical protein (R 29.9 82 0.0028 23.9 4.9 43 245-294 34-77 (104)
53 1wr1_B Ubiquitin-like protein 29.6 54 0.0018 22.1 3.5 26 247-272 14-40 (58)
54 3idw_A Actin cytoskeleton-regu 29.2 50 0.0017 23.3 3.3 52 39-91 6-59 (72)
55 2dkl_A Trinucleotide repeat co 27.2 53 0.0018 24.0 3.3 40 37-82 23-62 (85)
56 2dai_A Ubadc1, ubiquitin assoc 27.1 57 0.0019 23.7 3.5 38 252-296 31-68 (83)
57 2dag_A Ubiquitin carboxyl-term 27.0 1E+02 0.0034 21.8 4.7 43 33-80 7-49 (74)
58 2dkl_A Trinucleotide repeat co 26.5 59 0.002 23.7 3.5 38 251-295 22-59 (85)
59 3ezq_A Tumor necrosis factor r 26.1 46 0.0016 25.8 3.0 44 49-95 3-46 (115)
60 3oq9_A Tumor necrosis factor r 26.0 1.7E+02 0.006 21.2 6.0 27 69-95 12-38 (86)
61 2dai_A Ubadc1, ubiquitin assoc 25.9 1E+02 0.0035 22.3 4.7 40 34-79 28-67 (83)
62 1veg_A NEDD8 ultimate buster-1 25.9 93 0.0032 22.6 4.4 38 35-78 29-66 (83)
63 2dah_A Ubiquilin-3; UBA domain 24.9 97 0.0033 20.4 4.0 35 38-78 12-47 (54)
64 2o71_A Death domain-containing 23.9 1.4E+02 0.0047 22.9 5.4 18 77-94 43-60 (115)
65 1vej_A Riken cDNA 4931431F19; 23.4 56 0.0019 23.2 2.7 24 249-272 28-52 (74)
66 1vek_A UBP14, ubiquitin-specif 22.3 79 0.0027 22.9 3.5 39 252-296 31-69 (84)
67 3k9o_A Ubiquitin-conjugating e 22.1 71 0.0024 27.2 3.7 27 248-274 161-187 (201)
68 2c35_A Human RPB4, DNA-directe 22.1 59 0.002 26.5 3.0 27 105-131 90-116 (152)
69 3dfg_A Xcrecx, regulatory prot 21.8 3.2E+02 0.011 22.0 11.5 136 108-275 23-160 (162)
70 1vek_A UBP14, ubiquitin-specif 21.8 1.7E+02 0.006 21.0 5.3 42 33-79 27-68 (84)
71 1ixs_A Holliday junction DNA h 21.7 87 0.003 21.2 3.4 25 69-93 17-41 (62)
72 2csb_A Topoisomerase V, TOP61; 21.4 2.6E+02 0.009 24.9 7.2 28 36-63 350-377 (519)
73 3u5c_N S27A, YS15, 40S ribosom 20.5 2.6E+02 0.009 22.6 6.5 37 128-168 21-57 (151)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=3.5e-53 Score=410.00 Aligned_cols=310 Identities=14% Similarity=0.202 Sum_probs=271.3
Q ss_pred CCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHH
Q 047553 32 NSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEF 111 (377)
Q Consensus 32 ~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~f 111 (377)
..++..+|+|| .++|++.+++.+..++. ++.++++++++++||+++|++++||++++.++|.+|.++++ +|.|+++|
T Consensus 16 ~~~~~~~v~~L-~s~Gl~~~~~~~~~p~l-~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~f 92 (343)
T 3mva_O 16 PLKNEDLLKNL-LTMGVDIDMARKRQPGV-FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDL 92 (343)
T ss_dssp ----CCHHHHH-HHHTCCHHHHHHHCGGG-GGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHH
T ss_pred ccccHHHHHHH-HHcCCCHHHHHHhCchh-hccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHH
Confidence 34566799999 99999988876654433 23356899999999999999999999999999999999965 79999999
Q ss_pred HHhcCCCCchhhhhhhcccccchhhhh-ccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHHHH
Q 047553 112 FQHLGLVGSDLGKFISKNPSLFAASLE-RKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKS 190 (377)
Q Consensus 112 L~~lG~s~~~l~~ii~~~P~lL~~s~~-~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~~ 190 (377)
|+++|+++++++++|.++|++|..+.+ +++.|+++||+++|++ .++|++++.++|++|+++++ + +++++++|++
T Consensus 93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~---~~~i~~ll~~~P~il~~~~e-~-~~~~v~~L~~ 167 (343)
T 3mva_O 93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLT---RKCLCRLLTNAPRTFSNSLD-L-NKQMVEFLQA 167 (343)
T ss_dssp HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCC---HHHHHHHHHHCGGGGTSCHH-H-HHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCC---HHHHHHHHHhCChhheeCHH-H-hhHHHHHHHH
Confidence 999999999999999999995444444 5899999999999999 99999999999999999998 6 5999999998
Q ss_pred cCCC------chhHhhhhhhCCeeeEeehhhHHHHHHHHHh-cCCCCchh--hHHHHHHHHHhCCHHHHHHHHHHHH---
Q 047553 191 CGIV------GSQLSMLLVWQPRLFCYKELKIRHLVSRLLD-MGFSTNSR--MFVYGLVVLSCLNEETFGRKLELFR--- 258 (377)
Q Consensus 191 lG~~------~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~-lG~~~~~~--~~~~~p~~l~~~s~~~l~~k~~~L~--- 258 (377)
+|++ .+.|.++++++|.+++++.++++++++|+++ +|+++++. ++.+.+..+...+.+.++++++++.
T Consensus 168 lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~ 247 (343)
T 3mva_O 168 AGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL 247 (343)
T ss_dssp HHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHH
T ss_pred hCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHH
Confidence 7764 7789999999999999999999999999995 99999875 3333333444567889999997776
Q ss_pred -HcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhCCccccccccccchhhHHHHHHHHHCCCCCCC
Q 047553 259 -SYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKD 337 (377)
Q Consensus 259 -~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~~~~~ 337 (377)
++||+.+||.+|+.++|++|++|+++|++|++||++ ||++.++|+++|++|+||+| ||+|||+ +|+++|+ +
T Consensus 248 ~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~ 319 (343)
T 3mva_O 248 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---N 319 (343)
T ss_dssp HTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---C
T ss_pred HHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---C
Confidence 799999999999999999999999999999999999 99999999999999999999 9999997 5568998 4
Q ss_pred CCcc--chhccchhhHHHHhcc
Q 047553 338 CSFP--SMLLLSEGNFLQKFVL 357 (377)
Q Consensus 338 ~~l~--~~l~~s~~~F~~~~~~ 357 (377)
+++. ++|++||++|.++|.+
T Consensus 320 ~~~~~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 320 LSTLNITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp SSSSCGGGGGSCHHHHHHHHHH
T ss_pred CCCCcchhhcCCHHHHHHHHhc
Confidence 5555 9999999999999864
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=2e-48 Score=364.89 Aligned_cols=257 Identities=19% Similarity=0.315 Sum_probs=238.4
Q ss_pred HHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHH
Q 047553 70 ETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILK 149 (377)
Q Consensus 70 ~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~ 149 (377)
.+++++|.++|++.+++++....+|.+|.+++++++.|+++||+++|++++++++++.++|.+|.+++++ +.|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 4689999999999999988888888889999998999999999999999999999999999999999997 999999999
Q ss_pred HHhcCCCCchHHHHHHHhccccccccccccchhhhHHHH-HHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCC
Q 047553 150 KILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYL-KSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGF 228 (377)
Q Consensus 150 ~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L-~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~ 228 (377)
++|++ +++|++++.++|++|+++++ + ++++++|| +++|++.+++.+++.++|++++.+.+
T Consensus 85 ~~Gls---~~~i~~~l~~~P~lL~~s~~-~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-------------- 145 (270)
T 3m66_A 85 SKNFS---KADVAQMVRKAPFLLNFSVE-R-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-------------- 145 (270)
T ss_dssp HTTCC---HHHHHHHHHHSTTGGGSCHH-H-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH--------------
T ss_pred HcCCC---HHHHHHHHHhCCHHHcCCHH-H-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH--------------
Confidence 99999 99999999999999999998 5 99999999 57999999999999999999987753
Q ss_pred CCchhhHHHHHHHHHhCCHHHHHHHHHHH-HHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhCC
Q 047553 229 STNSRMFVYGLVVLSCLNEETFGRKLELF-RSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIP 307 (377)
Q Consensus 229 ~~~~~~~~~~p~~l~~~s~~~l~~k~~~L-~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~P 307 (377)
+++++++++ .++||+.++|.+++.++|++|++|++++++|++||+++||++.++|+++|
T Consensus 146 --------------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P 205 (270)
T 3m66_A 146 --------------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFP 205 (270)
T ss_dssp --------------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCG
T ss_pred --------------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCc
Confidence 456677866 49999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchhhHHHHHHHHHCCCCCCC---CCccchhccchhhHHHHhcccCCCChHHHH
Q 047553 308 ICLACSIENRVIPRYRVFQIIMSRGMFKKD---CSFPSMLLLSEGNFLQKFVLSFGDDAEELL 367 (377)
Q Consensus 308 ~~L~~Sle~ri~pR~~~l~~L~~~g~~~~~---~~l~~~l~~s~~~F~~~~~~~~~~~~~~~~ 367 (377)
++|+||+| ||+|||+++++|.++|+.+++ +++.+++.+||++|+++|++.+.|++....
T Consensus 206 ~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f~ 267 (270)
T 3m66_A 206 QVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFL 267 (270)
T ss_dssp GGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHHH
T ss_pred hHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHHH
Confidence 99999999 999999999999999997554 677789999999999999999987665443
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1.4e-38 Score=307.73 Aligned_cols=303 Identities=17% Similarity=0.225 Sum_probs=250.5
Q ss_pred cccCCCCCCchhhhhhhhhhhhcc-cCCCCCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCC--CChHHHHHHHHhCC
Q 047553 4 LKLNPFPNSQNFAIKSLFSFFASL-SKTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSL--EKPETVRQFLHNVG 80 (377)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~--~~~~~~l~~L~~lG 80 (377)
.|++++ ++.|+....+...+..+ ..++.+++ .+++|| +++|++.+++.+++.++|.++.. +++.++++||+++|
T Consensus 21 ~~v~~L-~s~Gl~~~~~~~~~p~l~~~s~~~~~-~vl~fL-~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG 97 (343)
T 3mva_O 21 DLLKNL-LTMGVDIDMARKRQPGVFHRMITNEQ-DLKMFL-LSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIV 97 (343)
T ss_dssp CHHHHH-HHHTCCHHHHHHHCGGGGGCSCCCHH-HHHHHH-HHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTS
T ss_pred HHHHHH-HHcCCCHHHHHHhCchhhccCcccHH-HHHHHH-HHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcC
Confidence 344455 56788777776666666 33444443 456888 89999999999999999999853 45778999999999
Q ss_pred CChHHHHHHHHhCCCeeccCCC-CchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcC-----
Q 047553 81 FSDTHIQLTVTSRPTILFSDVD-KTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVD----- 154 (377)
Q Consensus 81 ~~~~~i~~ii~~~P~lL~~~~~-~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~----- 154 (377)
++++++++++.++|++|..+.+ +++.|+++||+++|++.+++++++.++|+++++++++. +++++||+++|++
T Consensus 98 ~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~ 176 (343)
T 3mva_O 98 TSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHND 176 (343)
T ss_dssp SCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCc
Confidence 9999999999999995544445 48999999999999999999999999999999999865 9999999999873
Q ss_pred CCCchHHHHHHHhccccccccccccchhhhHHHHHH-cCCCchhHhhhhhhC-CeeeEeehhhHHHHHHHHH----hcCC
Q 047553 155 DSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKS-CGIVGSQLSMLLVWQ-PRLFCYKELKIRHLVSRLL----DMGF 228 (377)
Q Consensus 155 ~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~~-lG~~~~~i~~ll~~~-P~il~~s~~~l~~~v~~l~----~lG~ 228 (377)
+ ++.|.+++.++|.+|+++ + ++++++++||++ +|++.+++..++... |.+++.+.+.+++++.++. ++|+
T Consensus 177 p--~~~I~~il~~~P~iL~~s-~-~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~ 252 (343)
T 3mva_O 177 P--ADFVRKIIFKNPFILIQS-T-KRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 252 (343)
T ss_dssp H--HHHHHHHHHHCGGGGGSC-H-HHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred H--HHHHHHHHHhCChHhcCC-H-HHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence 2 568999999999999999 5 679999999995 999999999999875 5888899888888887665 6999
Q ss_pred CCchh--hHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhC
Q 047553 229 STNSR--MFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRI 306 (377)
Q Consensus 229 ~~~~~--~~~~~p~~l~~~s~~~l~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~ 306 (377)
+++++ ++.+.|.++ ..+.+++++|++||.++|++.++ |.++|++|++|.++|++|++||.+ .|++.+. .+
T Consensus 253 s~~ev~~~v~~~P~il-~~s~~~l~~k~~fl~~mg~~~~~----i~~~P~~l~~sleri~~R~~~L~~-~g~~~~~--~~ 324 (343)
T 3mva_O 253 TEEEVQKFVLSYPDVI-FLAEKKFNDKIDCLMEENISISQ----IIENPRVLDSSISTLKSRIKELVN-AGCNLST--LN 324 (343)
T ss_dssp CHHHHHHHHHTCGGGG-GSCHHHHHHHHHHHHTTTCCHHH----HHHSGGGGGSCHHHHHHHHHHHHT-TTCCSSS--SC
T ss_pred CHHHHHHHHHhCCchh-cccHHHHHHHHHHHHHcCCCHHH----HHhCCHHHhcCHHHHHHHHHHHHH-CCCCCCC--Cc
Confidence 99987 667777766 56788999999999999999986 469999999999999999999976 7876431 11
Q ss_pred CccccccccccchhhHH
Q 047553 307 PICLACSIENRVIPRYR 323 (377)
Q Consensus 307 P~~L~~Sle~ri~pR~~ 323 (377)
-.+|++| |++..-|+.
T Consensus 325 ~~~l~~s-~~~F~~~~~ 340 (343)
T 3mva_O 325 ITLLSWS-KKRYEAKLK 340 (343)
T ss_dssp GGGGGSC-HHHHHHHHH
T ss_pred chhhcCC-HHHHHHHHh
Confidence 2777777 335554443
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=288.48 Aligned_cols=222 Identities=13% Similarity=0.224 Sum_probs=176.0
Q ss_pred hhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhh
Q 047553 105 LKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRN 184 (377)
Q Consensus 105 l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~ 184 (377)
+...+++|.++|+++++|++++.++|.++.. ++.+.+.||..+|++ .++|+++|.++|++|+++++ +++++
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls---~e~V~kiL~k~P~lL~~s~e--~L~~~ 116 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLN---PEPVCVVLKKSPQLLKLPIM--QMRKR 116 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCC---HHHHHHHHHHCGGGGGSCHH--HHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCC---HHHHHHHHHhChhhccCCHH--HHHHH
Confidence 5556666777777777777777777777643 345667777777777 77777777777777777775 37777
Q ss_pred HHHHHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcCCC
Q 047553 185 IEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYGFS 263 (377)
Q Consensus 185 v~~L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG~s 263 (377)
++||+++|++.+++.+++.++|++++++.+ .++.++.+|. ++||+
T Consensus 117 l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS 162 (335)
T 4fp9_B 117 SSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFT 162 (335)
T ss_dssp HHHHHHTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCC
T ss_pred HHHHHHcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCC
Confidence 777777777777777777777777766543 3445566665 89999
Q ss_pred HHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhCCccccccccccchhhHHHHHHHHHCCC-------CCC
Q 047553 264 KEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGM-------FKK 336 (377)
Q Consensus 264 ~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~-------~~~ 336 (377)
.++|.+|+.++|+||++|.++|++|++||+++||+++++|++ |++|+||++ ||+|||.||+.|..-.. ..+
T Consensus 163 ~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~ 240 (335)
T 4fp9_B 163 VQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP 240 (335)
T ss_dssp HHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSC
T ss_pred HHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCC
Confidence 999999999999999999999999999999999999999997 999999999 99999998876533211 113
Q ss_pred CCCccchhccchhhHHHHhcccCCCChHHHHHHHh
Q 047553 337 DCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYK 371 (377)
Q Consensus 337 ~~~l~~~l~~s~~~F~~~~~~~~~~~~~~~~~~y~ 371 (377)
+++|.+++..||++||.++++...+++..+.+.+.
T Consensus 241 npsL~~il~~sd~~F~~~vA~~s~eey~~F~k~~~ 275 (335)
T 4fp9_B 241 NPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLA 275 (335)
T ss_dssp CCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred CccHHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 56899999999999999999999888877777664
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=3.2e-34 Score=268.37 Aligned_cols=213 Identities=15% Similarity=0.228 Sum_probs=194.0
Q ss_pred chhHHHhHhhCCCChhhHHHHHhhccCCCCC---CChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHH
Q 047553 36 FIFLNFLIKTLNIPKSRALPISNKFSRIKSL---EKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFF 112 (377)
Q Consensus 36 ~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~---~~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL 112 (377)
+.+|+|| .++|++.+++.+....+|.++.. .+++++++||.++|+++++|++++.++|.+|.+++++ +.|+++||
T Consensus 6 s~~l~~L-~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 6 SETLQKL-VLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHH-HHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred hHHHHHH-HHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 5689999 79999999998776666776753 3678899999999999999999999999999999997 99999999
Q ss_pred HhcCCCCchhhhhhhcccccchhhhhccchhHHHHH-HHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHH-HH
Q 047553 113 QHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEIL-KKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYL-KS 190 (377)
Q Consensus 113 ~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L-~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L-~~ 190 (377)
+++|++.+++++++.++|++|+++++ +++|+++|| .++|++ ++++.+++.++|++++.+.+ +++++++++ ++
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~---~~~i~~ll~~~P~il~~s~e--~~~~~v~~l~~~ 157 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELS---VKKTRDLVVRLPRLLTGSLE--PVKENMKVYRLE 157 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCC---HHHHHHHHHHSGGGGTSCSH--HHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCC---HHHHHHHHHhCCcceeechH--HHHHHHHHHHHH
Confidence 99999999999999999999999998 599999999 589999 99999999999999999997 499999986 57
Q ss_pred cCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcCCCHHHHHH
Q 047553 191 CGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYGFSKEEVLQ 269 (377)
Q Consensus 191 lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG~s~~~v~~ 269 (377)
+|++.+++..++.++|.++++|. +++++|++||. ++|++.++
T Consensus 158 ~G~s~~ei~~~v~~~P~il~~s~----------------------------------~~l~~k~~fL~~~mg~~~~~--- 200 (270)
T 3m66_A 158 LGFKHNEIQHMITRIPKMLTANK----------------------------------MKLTETFDFVHNVMSIPHHI--- 200 (270)
T ss_dssp SCCCHHHHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHTTSCCCHHH---
T ss_pred cCCCHHHHHHHHHhCChhheecH----------------------------------HHHHHHHHHHHHHhCCCHHH---
Confidence 99999999999999999987664 46788888996 79999985
Q ss_pred HHHhCCcccccCHHHHHHHHHHHHH
Q 047553 270 MFRKAPLILKASEERLQLGLEFFLK 294 (377)
Q Consensus 270 ~i~~~P~iL~~s~~~L~~k~~fL~~ 294 (377)
|.++|.+|++|.++|++|+.|+..
T Consensus 201 -i~~~P~~l~~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 201 -IVKFPQVFNTRLFKVKERHLFLTY 224 (270)
T ss_dssp -HHHCGGGGGSCHHHHHHHHHHHHH
T ss_pred -HHhCchHhhCCHHHHHHHHHHHHH
Confidence 569999999999999999999865
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=227.65 Aligned_cols=181 Identities=20% Similarity=0.266 Sum_probs=166.5
Q ss_pred ChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHH
Q 047553 68 KPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEI 147 (377)
Q Consensus 68 ~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~ 147 (377)
+++.++.+|.++||++++|++++..+|.++.. ++.+++.||..+|++.++|+++|.++|.+|+++++ +|+|+++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 57788999999999999999999999999744 48899999999999999999999999999999997 79999999
Q ss_pred HHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHHH-HcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhc
Q 047553 148 LKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLK-SCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDM 226 (377)
Q Consensus 148 L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~-~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~l 226 (377)
|+++|++ ..++.+++.++|++|+++.+ ++..++.+|+ ++|++.+++..|+.++|.+|.++
T Consensus 120 L~~lGl~---~~~i~~ll~~~P~lL~~s~e--~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-------------- 180 (335)
T 4fp9_B 120 LQKLGLG---EGKLKRVLYCCPEIFTMRQQ--DINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-------------- 180 (335)
T ss_dssp HHHTTCT---TTTHHHHHHHCGGGGTSCHH--HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC--------------
T ss_pred HHHcCCC---HHHHHHHHHhCchhhccChH--HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC--------------
Confidence 9999999 99999999999999999997 4999999997 59999999999999999999766
Q ss_pred CCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCC
Q 047553 227 GFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIEC 298 (377)
Q Consensus 227 G~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~ 298 (377)
.++|++|++||. +||++.++|. + |.+|+||.++|++|+.||.. +|.
T Consensus 181 --------------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 181 --------------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp --------------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred --------------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence 446788899998 9999999764 3 99999999999999999976 787
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.43 E-value=2e-12 Score=105.91 Aligned_cols=181 Identities=15% Similarity=0.276 Sum_probs=139.5
Q ss_pred chhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHHHHcCCCchhHhhhhhhCCeeeEeehhhHHHHH
Q 047553 141 LIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLV 220 (377)
Q Consensus 141 l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v 220 (377)
+...+.-+.-+|+. .+-++-++.+.|++|...+- .++.+-.||+.+|+.+..+.+++-.+|.+|++....+...
T Consensus 33 lldiisefillgln---pepvcvvlkkspqllklpim--qmrkrssylqklglgegklkrvlyccpeiftmrqqdindt- 106 (239)
T 4fzv_B 33 LLDIISEFILLGLN---PEPVCVVLKKSPQLLKLPIM--QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDT- 106 (239)
T ss_dssp TTHHHHHHHHHCCC---TTHHHHHHHSCGGGGTSCHH--HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHH-
T ss_pred HHHHHHHHHhhcCC---CCceEEEecCCHHHhcChHH--HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHH-
Confidence 34444455556777 67777777788887777665 4777777888888888888888877888877765443332
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCC
Q 047553 221 SRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECE 299 (377)
Q Consensus 221 ~~l~~lG~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~ 299 (377)
+..|+ ++-|+..++.+++..+|.++.-+...++-|+.|-.-.||+.
T Consensus 107 ---------------------------------vrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgik 153 (239)
T 4fzv_B 107 ---------------------------------VRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIK 153 (239)
T ss_dssp ---------------------------------HHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCC
T ss_pred ---------------------------------HHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCC
Confidence 34444 56789999999999999999999999999999988889999
Q ss_pred hHHHhhCCccccccccccchhhHHHHHHHHH------CCCC-CCCCCccchhccchhhHHHHhcccCCCC
Q 047553 300 KSVLVRIPICLACSIENRVIPRYRVFQIIMS------RGMF-KKDCSFPSMLLLSEGNFLQKFVLSFGDD 362 (377)
Q Consensus 300 ~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~------~g~~-~~~~~l~~~l~~s~~~F~~~~~~~~~~~ 362 (377)
+.||++ ..+|.||+. .|+.||-+++.|.+ +|.. .+++-+.+++..|+.+|+.+-....-|+
T Consensus 154 hpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsvee 221 (239)
T 4fzv_B 154 HPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEE 221 (239)
T ss_dssp HHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHH
T ss_pred CcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHH
Confidence 999988 478999998 89999998887643 2322 1356788999999999999988776544
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.77 E-value=6.5e-08 Score=79.30 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=123.6
Q ss_pred chhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhh
Q 047553 104 TLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLR 183 (377)
Q Consensus 104 ~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~ 183 (377)
++...+.-|.-+|+.++-++-++.+.|.++...+- +++.+-.||+.+|+. +..+.+++-.||.|+++..+ .+..
T Consensus 32 qlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglg---egklkrvlyccpeiftmrqq--dind 105 (239)
T 4fzv_B 32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLG---EGKLKRVLYCCPEIFTMRQQ--DIND 105 (239)
T ss_dssp TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTC---SSCCHHHHHHCGGGGTSCHH--HHHH
T ss_pred HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCC---ccchhhheecCcHHHHHHHh--hHhH
Confidence 45666777778999999999999999999999885 899999999999998 88999999999999999886 4999
Q ss_pred hHHHHHH-cCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcC
Q 047553 184 NIEYLKS-CGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYG 261 (377)
Q Consensus 184 ~v~~L~~-lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG 261 (377)
.+..|++ |-++..++.+++..+|.++.-+.. .++-|+.|-- ++|
T Consensus 106 tvrllkekclftvqqvtkilhscpsvlredlg----------------------------------qleykfqyayfrmg 151 (239)
T 4fzv_B 106 TVRLLKEKCLFTVQQVTKILHSCPSVLREDLG----------------------------------QLEYKFQYAYFRMG 151 (239)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTT----------------------------------HHHHHHHHHHHTSC
T ss_pred HHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHh----------------------------------hhhhhHhHHHHHcc
Confidence 9999987 999999999999999988755433 3444455443 688
Q ss_pred CCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCC
Q 047553 262 FSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIEC 298 (377)
Q Consensus 262 ~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~ 298 (377)
+..-++.+ ...+.||..+++.+.-||.+ +|.
T Consensus 152 ikhpdivk-----seylqysltkikqrhiyler-lgr 182 (239)
T 4fzv_B 152 IKHPDIVK-----SEYLQYSLTKIKQRHIYLER-LGR 182 (239)
T ss_dssp CCHHHHHH-----TTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred CCCcchhH-----HHHHHHHHHHHHHHHhHHHH-hcc
Confidence 88776542 46788999999999999865 665
No 9
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=90.32 E-value=1.1 Score=42.59 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=8.2
Q ss_pred hhhhhhhcccccch
Q 047553 121 DLGKFISKNPSLFA 134 (377)
Q Consensus 121 ~l~~ii~~~P~lL~ 134 (377)
+++.+|..+|.+|-
T Consensus 248 ~lR~~vq~nP~~l~ 261 (368)
T 1oqy_A 248 NMRQVIQQNPALLP 261 (368)
T ss_dssp HHHHSTTTCTTHHH
T ss_pred HHHHHHHhChHHHH
Confidence 45666666666543
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=89.74 E-value=1.7 Score=34.39 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=67.3
Q ss_pred chhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHH------hCCCChHHHHHHHHhCCCeeccCCCCchhhHH
Q 047553 36 FIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLH------NVGFSDTHIQLTVTSRPTILFSDVDKTLKPKI 109 (377)
Q Consensus 36 ~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~------~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i 109 (377)
...|..| -+.||+...+.+++.+. . .+++..++||. +.|+++.++...+..+..--... ..-...+
T Consensus 9 ~~~v~~l-~~MGFp~~~~~kAl~~~----g-~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~v 80 (118)
T 4ae4_A 9 RQCVETV-VNMGYSYECVLRAMKAA----G-ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQLM 80 (118)
T ss_dssp HHHHHHH-HHTTCCHHHHHHHHHHH----C-SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHH----C-cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHHH
Confidence 4457788 67999999999998776 3 27888888885 45888888887776542110000 0112457
Q ss_pred HHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHH
Q 047553 110 EFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKK 150 (377)
Q Consensus 110 ~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~ 150 (377)
.-|.++|++.+.+.+.+..+- +++...++||..
T Consensus 81 ~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~ 113 (118)
T 4ae4_A 81 SKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMA 113 (118)
T ss_dssp HHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 778888998888888775543 466677777755
No 11
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=86.23 E-value=1.4 Score=29.68 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=21.5
Q ss_pred hccCCCCCCChHHHHHHHHhCCCChHHHHHHHHh
Q 047553 59 KFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTS 92 (377)
Q Consensus 59 ~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~~ 92 (377)
..|.+.+ .-+..+++||++.|++.++|...+.+
T Consensus 21 ~dp~V~~-sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 21 QNSRVRQ-SPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HCTTGGG-SCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChhhhc-CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3455544 34666777777777777777776654
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=86.09 E-value=0.45 Score=45.39 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=81.2
Q ss_pred CchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCChH------------------------HHHHHH
Q 047553 35 NFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDT------------------------HIQLTV 90 (377)
Q Consensus 35 ~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~~~------------------------~i~~ii 90 (377)
+..+|.-| .++||+.+++.++++.. ..+++..++||.+ |+... +--..+
T Consensus 168 ~~~~i~~l-~~MGf~~~~~~~AL~a~-----~nn~~~A~e~L~~-gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 240 (368)
T 1oqy_A 168 YETMLTEI-MSMGYERERVVAALRAS-----YNNPHRAVEYLLT-GIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFL 240 (368)
T ss_dssp HHHHHHHH-HTTTCCSHHHHHHHHHS-----CSSTTHHHHTTTT-SSTTCSSCCCCCCCCCCSSCCCCSSCCSCCTTHHH
T ss_pred hHHHHHHH-HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHh-CCCcccccccCCccccccccccCccccccchHHHH
Confidence 44568888 68999999999988755 2478888888853 34432 001222
Q ss_pred HhCCCe------eccCCCCchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCC-CCchHHHH
Q 047553 91 TSRPTI------LFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDD-SNNEDLTR 163 (377)
Q Consensus 91 ~~~P~l------L~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~-~~~~~i~~ 163 (377)
+.+|++ +..+++ -|. .+|+.+|-+..++.++|..||.-|..-+..-+..- .-|... .....+..
T Consensus 241 r~~pqf~~lR~~vq~nP~-~l~---~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~-----~~~~~~~~~~~~~~~ 311 (368)
T 1oqy_A 241 RDQPQFQNMRQVIQQNPA-LLP---ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGEL-----ADISDVEGEVGAIGE 311 (368)
T ss_dssp HHSHHHHHHHHSTTTCTT-HHH---HHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCS-----CSSCCCSSSSCCCSC
T ss_pred hcChHHHHHHHHHHhChH-HHH---HHHHHHHhhCHHHHHHHHHCHHHHHHHHcCccccc-----ccccccccccccccc
Confidence 223321 112221 011 34556787888888888888875443332111000 000000 00000000
Q ss_pred HHHhccccccccccccchhhhHHHHHHcCCCchhHhhhhhhCC
Q 047553 164 VFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQP 206 (377)
Q Consensus 164 ~l~~~P~lL~~~~~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P 206 (377)
. .-.+..+....+ =+..|+-|.++||+...+.+.+..+-
T Consensus 312 ~-~~~~~~i~~t~e---e~eaI~rL~~mGF~~~~a~~al~a~~ 350 (368)
T 1oqy_A 312 E-APQMNYIQVTPQ---EKEAIERLKALGFPESLVIQAYFACE 350 (368)
T ss_dssp C-CTTCSSCCCCTT---THHHHHHHHHHTCCSHHHHHHTSSSS
T ss_pred c-CCccccccCCCc---CHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 0 001223344444 36788999999999999988887665
No 13
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=85.77 E-value=0.81 Score=30.78 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=26.4
Q ss_pred HHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhhhc
Q 047553 90 VTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISK 128 (377)
Q Consensus 90 i~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~ 128 (377)
+..+|.+-... +..+++||++-|++.++|..++.+
T Consensus 19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 44677775544 667889999999998888877765
No 14
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=84.62 E-value=1.8 Score=34.14 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=58.1
Q ss_pred hhhHHHHHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHH------hcCCCCchhhHHHHHHHHHhCCHH---HHHH
Q 047553 182 LRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLL------DMGFSTNSRMFVYGLVVLSCLNEE---TFGR 252 (377)
Q Consensus 182 ~~~v~~L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~------~lG~~~~~~~~~~~p~~l~~~s~~---~l~~ 252 (377)
+..+.-|.++||+...+.+.+...- . ..+..++||. +.|++...+. .++. +...+.. .-.+
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g----~---~~e~amewL~~h~~L~d~~~d~~~~e--~~l~-~~~~~~~~~~~~~~ 78 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG----A---NIEQILDYLFAHGQLCEKGFDPLLVE--EALE-MHQCSEEKMMEFLQ 78 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC----S---CHHHHHHHHHHHHHHHHTTCCHHHHH--HHHH-HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC----c---CHHHHHHHHHHhchhcccCCChhhhH--HHHH-hccCCccccccCHH
Confidence 4567778889999998888876541 1 3445555553 4566554321 0010 1111111 1235
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 047553 253 KLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEI 296 (377)
Q Consensus 253 k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~ 296 (377)
.+.-|.+|||+.+++.+.++.+- ..+..-+++|....
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~~-------nd~erAlewL~~~~ 115 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLHN-------NDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTT-------TCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHhc
Confidence 67788899999999998887743 24555566666543
No 15
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=80.53 E-value=3.3 Score=29.25 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=24.7
Q ss_pred hccCCCCCCChHHHHHHHHhCCCChHHHHHHHHhC
Q 047553 59 KFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSR 93 (377)
Q Consensus 59 ~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~~~ 93 (377)
..|.+.. .-++.+++||++.|++.++|...+.+.
T Consensus 26 qdp~V~~-sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 26 QNSRVRQ-SPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CSTTGGG-SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChhhhh-CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3455544 356778888888888888888887764
No 16
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=75.79 E-value=4.3 Score=28.68 Aligned_cols=27 Identities=15% Similarity=0.422 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Q 047553 248 ETFGRKLELFRSYGFSKEEVLQMFRKA 274 (377)
Q Consensus 248 ~~l~~k~~~L~~lG~s~~~v~~~i~~~ 274 (377)
..+..|++||++=|++.+||..++.+.
T Consensus 33 sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 33 SPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 357789999999999999999888874
No 17
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.08 E-value=7.1 Score=25.07 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=30.1
Q ss_pred CCCCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHh
Q 047553 30 TPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHN 78 (377)
Q Consensus 30 ~~~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~ 78 (377)
++...+...|.-| .++||+.+++.++++.. .+++..++||.+
T Consensus 4 ~~~~~~~~~v~~L-~~MGF~~~~a~~AL~~~------~n~e~A~~~L~~ 45 (47)
T 2ekk_A 4 GSSGVNQQQLQQL-MDMGFTREHAMEALLNT------STMEQATEYLLT 45 (47)
T ss_dssp CCCSSCHHHHHHH-HHHHCCHHHHHHHHHHS------CSHHHHHHHHHT
T ss_pred CCCCCCHHHHHHH-HHcCCCHHHHHHHHHHc------CCHHHHHHHHHc
Confidence 3345667778888 56888888888877655 267777888754
No 18
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.60 E-value=7.6 Score=25.27 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 047553 248 ETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLK 294 (377)
Q Consensus 248 ~~l~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~ 294 (377)
..-..+++-|.+|||+++++.+.++.+-. ++..-++||..
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTS-------CSHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 34567788889999999998888876432 34555777765
No 19
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.09 E-value=10 Score=26.05 Aligned_cols=44 Identities=7% Similarity=0.102 Sum_probs=31.8
Q ss_pred CCCCCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHh
Q 047553 29 KTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHN 78 (377)
Q Consensus 29 ~~~~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~ 78 (377)
+.+..++...|.-| ..+||+.+++.++++.. . .+++..++||.+
T Consensus 3 ~~~~~~~~~~v~~L-~~MGF~~~~a~~AL~~t----~-~nve~A~e~L~~ 46 (63)
T 2dak_A 3 SGSSGPPEDCVTTI-VSMGFSRDQALKALRAT----N-NSLERAVDWIFS 46 (63)
T ss_dssp CCSCCCCHHHHHHH-HHHTCCHHHHHHHHHHT----T-SCSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHH-HHcCCCHHHHHHHHHHc----C-CCHHHHHHHHHh
Confidence 34456777778888 56899988888887665 1 367888888764
No 20
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=61.42 E-value=1.8 Score=44.24 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=10.4
Q ss_pred hcCCCCchhhhhhhcc
Q 047553 114 HLGLVGSDLGKFISKN 129 (377)
Q Consensus 114 ~lG~s~~~l~~ii~~~ 129 (377)
..|++.++|..|...+
T Consensus 489 ~~gls~~qvvaiA~n~ 504 (1047)
T 3ugm_A 489 AHGLTPDQVVAIASNI 504 (1047)
T ss_dssp HSCCCSHHHHHHHSST
T ss_pred hcCCCHHHHHHHHhcc
Confidence 3677777777765443
No 21
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=60.95 E-value=7.9 Score=25.60 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHh
Q 047553 249 TFGRKLELFRSYGFSKEEVLQMFRK 273 (377)
Q Consensus 249 ~l~~k~~~L~~lG~s~~~v~~~i~~ 273 (377)
.+...|+-|.++||+++++.+.+..
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4456788888999999988877664
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=59.79 E-value=7.5 Score=24.36 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Q 047553 252 RKLELFRSYGFSKEEVLQMFRKA 274 (377)
Q Consensus 252 ~k~~~L~~lG~s~~~v~~~i~~~ 274 (377)
++++-|.+|||+++++.+.+..+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 56778888999998888777763
No 23
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=58.40 E-value=13 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHh
Q 047553 249 TFGRKLELFRSYGFSKEEVLQMFRK 273 (377)
Q Consensus 249 ~l~~k~~~L~~lG~s~~~v~~~i~~ 273 (377)
.+...++-|.++||+.+++.+.+..
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4667788899999999988877654
No 24
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=58.09 E-value=13 Score=22.64 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhC
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKA 274 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~ 274 (377)
..+++-|.++||+.+++.+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 346777888899988887776653
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=55.31 E-value=13 Score=24.62 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHh
Q 047553 247 EETFGRKLELFRSYGF-SKEEVLQMFRK 273 (377)
Q Consensus 247 ~~~l~~k~~~L~~lG~-s~~~v~~~i~~ 273 (377)
++....+++-|.+||| +++.+.+.+..
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~ 35 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIA 35 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445666677777777 66655555443
No 26
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=53.05 E-value=36 Score=23.31 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=31.4
Q ss_pred CCCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 31 PNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 31 ~~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
|...+...|.-| .++||+..++.++++.. ...+++..++||.+.
T Consensus 5 ~~~~~~~~v~~L-~~MGF~~~~a~~AL~~t----~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 5 SSGAELTALESL-IEMGFPRGRAEKALALT----GNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCCCCCHHHHH-HTTTCCHHHHHHHHHHH----TSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-HHcCCCHHHHHHHHHHh----cCCCHHHHHHHHHhC
Confidence 345566678888 56899998888887644 114788888888754
No 27
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=51.17 E-value=17 Score=24.28 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHh
Q 047553 248 ETFGRKLELFRSYGFSKEEVLQMFRK 273 (377)
Q Consensus 248 ~~l~~k~~~L~~lG~s~~~v~~~i~~ 273 (377)
+..+..++-|.++||+.+++.+.+..
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~i 30 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHHH
Confidence 34566788899999999998877654
No 28
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.37 E-value=17 Score=24.07 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Q 047553 250 FGRKLELFRSYGFSKEEVLQMFRK 273 (377)
Q Consensus 250 l~~k~~~L~~lG~s~~~v~~~i~~ 273 (377)
...+|+-|.++||+++++.+.+..
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345688888999999988887765
No 29
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.17 E-value=15 Score=25.25 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHh
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKE 295 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~ 295 (377)
..+++.|.+|||+.+++.+.+..+= .++..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 3467888899999999888777642 2466668888763
No 30
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=48.45 E-value=13 Score=26.43 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 047553 249 TFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLK 294 (377)
Q Consensus 249 ~l~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~ 294 (377)
..+.+|+-|.+|||+++++.+.+..+= .++..-++||..
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 345678888899999999988887631 245666788875
No 31
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=45.31 E-value=38 Score=26.49 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=31.0
Q ss_pred CCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 34 TNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 34 ~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
.|...|.-| .++||+...+.++++.... .+++..++||..+
T Consensus 2 ~d~~~l~~L-~~MGF~~~~a~~AL~~t~n----~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 2 IDESSVMQL-AEMGFPLEACRKAVYFTGN----MGAEVAFNWIIVH 42 (126)
T ss_dssp CCTHHHHHH-HTTSSCCHHHHHHHHHHTS----CCHHHHHHHHHHG
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHcCC----CCHHHHHHHHHHh
Confidence 456677888 5799999999988876622 3688889998764
No 32
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.48 E-value=41 Score=23.08 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=31.4
Q ss_pred CCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCC
Q 047553 33 STNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVG 80 (377)
Q Consensus 33 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG 80 (377)
.++...|+-| .+.||+.+.+.+++... ...+++..++||.+..
T Consensus 7 ~~~e~~v~~L-~~MGF~~~~a~~AL~~t----~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 7 GSSPSLLEPL-LAMGFPVHTALKALAAT----GRKTAEEALAWLHDHC 49 (64)
T ss_dssp CCSCSSHHHH-HHTSCCHHHHHHHHHHH----TSCCHHHHHHHHHHHS
T ss_pred CCCHHHHHHH-HHcCCCHHHHHHHHHHh----CCCCHHHHHHHHHhCC
Confidence 3455668888 56999999988887655 1137888889987654
No 33
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.31 E-value=29 Score=23.80 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEI 296 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~ 296 (377)
+..++-+..|||+.+++.+.+++.. .+++.-.|||..++
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCC
Confidence 3457888899999999998888743 35777788887654
No 34
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=43.75 E-value=19 Score=23.65 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHh
Q 047553 249 TFGRKLELFRSYGF-SKEEVLQMFRK 273 (377)
Q Consensus 249 ~l~~k~~~L~~lG~-s~~~v~~~i~~ 273 (377)
....+++-|.+||| +++.+.+.+..
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~ 36 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIA 36 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44566777777777 66655555543
No 35
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.32 E-value=23 Score=24.22 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEI 296 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~ 296 (377)
..+++-|.+|||+++++.+.++.+-. +++.-++||...+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 45678888999999999998888532 3667788887754
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=43.11 E-value=22 Score=25.18 Aligned_cols=38 Identities=8% Similarity=0.312 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHh
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKE 295 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~ 295 (377)
..+++.|.+|||+++++.+.++.+-. ++..-++||...
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGG-------DIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHhC
Confidence 34577888999999998888876432 466667888763
No 37
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=43.07 E-value=22 Score=26.01 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhC
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIE 297 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g 297 (377)
..+++-|.+|||+++++.+.++..- .++..-++||....|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 4567888899999999988887633 247777999988766
No 38
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.25 E-value=32 Score=22.85 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=28.8
Q ss_pred CCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCC
Q 047553 33 STNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFS 82 (377)
Q Consensus 33 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~ 82 (377)
..|+-+++-| -+.||+.+.+..+++.- ....+++.++||.++++.
T Consensus 7 ~vn~qmlq~L-~eMGFd~erae~Alk~T----g~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 7 GVNRQMLQEL-VNAGCDQEMAGRALKQT----GSRSIEAALEYISKMSGP 51 (54)
T ss_dssp SCCHHHHHHH-HHHHCCHHHHHHHHHHH----TSCCHHHHHHHHHHHSCS
T ss_pred hhHHHHHHHH-HHcCCCHHHHHHHHHHh----CcccHHHHHHHHHHhcCC
Confidence 4555556667 45788777777666544 224577777777766654
No 39
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.23 E-value=66 Score=21.93 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=26.2
Q ss_pred CCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 34 TNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 34 ~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
.+...|+-| ..+||+.+++.++++.+ ..+++..++||.+.
T Consensus 8 ~~~~~I~~L-~~MGF~~~~a~~AL~~~-----~~nve~A~e~L~~~ 47 (63)
T 1wji_A 8 VDEKALKHI-TEMGFSKEASRQALMDN-----GNNLEAALNVLLTS 47 (63)
T ss_dssp SCHHHHHHH-HTTTCCHHHHHHHHHHT-----TSCHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHHC
Confidence 455567777 56788777777766554 13677777777543
No 40
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=40.94 E-value=81 Score=21.23 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhCCccccccccccchhhHHHHHHHHHCCCC
Q 047553 262 FSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMF 334 (377)
Q Consensus 262 ~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~~ 334 (377)
++++++...|+..-.++. ++++.++.|.+.+++. .+|+.|.++|++
T Consensus 10 ~~e~~lL~yIr~sGGild---------I~~~a~kygV~kdeV~------------------~~LrrLe~KGLI 55 (59)
T 2xvc_A 10 ITERELLDYIVNNGGFLD---------IEHFSKVYGVEKQEVV------------------KLLEALKNKGLI 55 (59)
T ss_dssp CCHHHHHHHHHHTTSEEE---------HHHHHHHHCCCHHHHH------------------HHHHHHHHTTSE
T ss_pred ccHHHHHHHHHHcCCEEe---------HHHHHHHhCCCHHHHH------------------HHHHHHHHCCCe
Confidence 466777777888777777 6666777888877763 345567788874
No 41
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.34 E-value=23 Score=24.30 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=27.4
Q ss_pred HHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 39 LNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 39 v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
|+-| -++||+.+++.++++.. ..+++..++||.++
T Consensus 23 V~~L-vsMGFs~~qA~kALKat-----~~NvErAaDWLFSH 57 (63)
T 1wgn_A 23 VETV-VNMGYSYECVLRAMKKK-----GENIEQILDYLFAH 57 (63)
T ss_dssp HHHH-HHHHCCHHHHHHHHHHH-----CSCHHHHHHHHHHH
T ss_pred HHHH-HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHhC
Confidence 7777 57899999988888766 25788888888654
No 42
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=38.32 E-value=22 Score=24.48 Aligned_cols=44 Identities=7% Similarity=0.251 Sum_probs=27.5
Q ss_pred HHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCch
Q 047553 189 KSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNS 232 (377)
Q Consensus 189 ~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~ 232 (377)
+.+|++...|.+++...+.-...++++.+...+..+++|+.++.
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 45788888888887765511123555555555666777877664
No 43
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=37.01 E-value=74 Score=20.74 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=4.9
Q ss_pred HHHHHHhCCC
Q 047553 72 VRQFLHNVGF 81 (377)
Q Consensus 72 ~l~~L~~lG~ 81 (377)
.++-|.++||
T Consensus 14 ~l~~L~~MGF 23 (53)
T 2knz_A 14 QLEQLNSMGF 23 (53)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHcCC
Confidence 3444555555
No 44
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=36.67 E-value=40 Score=23.22 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=30.2
Q ss_pred HHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCch
Q 047553 188 LKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNS 232 (377)
Q Consensus 188 L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~ 232 (377)
-+..|++...|.+++...|. .++++-+...+..+++|+.++.
T Consensus 16 A~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 16 ALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccH
Confidence 34589999999998876664 3666666666777888887764
No 45
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.62 E-value=62 Score=22.80 Aligned_cols=41 Identities=10% Similarity=0.018 Sum_probs=26.9
Q ss_pred CCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 33 STNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 33 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
..+...|.-| .++||+.+++.++++.. ..+++..++||.+.
T Consensus 27 ~~~~~~v~~L-~~MGF~~~~a~~AL~~t-----~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 27 DIDQSSVDTL-LSFGFAEDVARKALKAS-----GGDIEKATDWVFNN 67 (73)
T ss_dssp SSCHHHHHHH-HHHTCCHHHHHHHHHHT-----TSCHHHHHHHHHHS
T ss_pred CCCHHHHHHH-HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHhC
Confidence 3555667777 56788777777776554 13677777777653
No 46
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=35.72 E-value=12 Score=24.05 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=15.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Q 047553 252 RKLELFRSYGFSKEEVLQMFRKA 274 (377)
Q Consensus 252 ~k~~~L~~lG~s~~~v~~~i~~~ 274 (377)
.+|+-|.+|||++.++.+.+..+
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~ 28 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFAC 28 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 34666778888888777665543
No 47
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=35.22 E-value=46 Score=21.14 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHH
Q 047553 248 ETFGRKLELFRSYGFS-KEEVLQMFR 272 (377)
Q Consensus 248 ~~l~~k~~~L~~lG~s-~~~v~~~i~ 272 (377)
+..+.+++-|.+|||+ .+.+.+.+.
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~ 30 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALR 30 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3456677777778875 443444444
No 48
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.50 E-value=67 Score=21.96 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCC
Q 047553 34 TNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVG 80 (377)
Q Consensus 34 ~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG 80 (377)
++...|+-| ..+||+..++.++++.. .-.+++..++||.+..
T Consensus 18 ~~e~~i~~L-~~MGF~~~~a~~AL~~t----~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 18 KHGSALDVL-LSMGFPRARAQKALAST----GGRSVQTACDWLFSHS 59 (64)
T ss_dssp SCCCHHHHH-HHHTCCHHHHHHHHHHT----TTSCHHHHHHHHHSCC
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHc----CCCCHHHHHHHHHhCC
Confidence 555678888 56999999998887655 1137888889887653
No 49
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.21 E-value=82 Score=22.26 Aligned_cols=37 Identities=5% Similarity=-0.052 Sum_probs=22.4
Q ss_pred chhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHh
Q 047553 36 FIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHN 78 (377)
Q Consensus 36 ~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~ 78 (377)
...|.-| .++||+.+++..+++.. ..+++..++||.+
T Consensus 30 ee~I~~L-~eMGF~r~~a~~AL~~~-----~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKL-VAMGFDRTQVEVALAAA-----DDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHH-HTTTCCHHHHHHHHHHH-----TSCHHHHHHHHHT
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 3456666 55777777776666544 1356666666654
No 50
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.09 E-value=37 Score=24.09 Aligned_cols=40 Identities=5% Similarity=0.149 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhC
Q 047553 252 RKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIE 297 (377)
Q Consensus 252 ~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g 297 (377)
.+++-|.+|||+++++.+.++.+-. ..++.-++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 4577888999999998888876421 136777899988543
No 51
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=30.06 E-value=99 Score=20.33 Aligned_cols=38 Identities=11% Similarity=-0.034 Sum_probs=21.2
Q ss_pred hhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCC
Q 047553 37 IFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVG 80 (377)
Q Consensus 37 ~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG 80 (377)
..+.-| -++|++.+++.+++... ..+++-.-.+|.+..
T Consensus 13 ~~Ia~L-m~mGFsr~~ai~AL~~a-----~nnve~AaniLlef~ 50 (52)
T 2ooa_A 13 AKIAKL-MGEGYAFEEVKRALEIA-----QNNVEVARSILREFA 50 (52)
T ss_dssp HHHHHH-HHTTCCHHHHHHHHHHT-----TTCHHHHHHHHHHHC
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHHhc
Confidence 456666 45777777776665432 145555555554433
No 52
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.92 E-value=82 Score=23.95 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHc-CCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 047553 245 LNEETFGRKLELFRSY-GFSKEEVLQMFRKAPLILKASEERLQLGLEFFLK 294 (377)
Q Consensus 245 ~s~~~l~~k~~~L~~l-G~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~ 294 (377)
.++..++++|+.|.++ |++++++..++..+=. .+..-+.+|.+
T Consensus 34 ~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lle 77 (104)
T 1wj7_A 34 HNDADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLE 77 (104)
T ss_dssp SCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHh
Confidence 3455678899999987 9999998887776322 24555777765
No 53
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.58 E-value=54 Score=22.06 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHH
Q 047553 247 EETFGRKLELFRSYGFS-KEEVLQMFR 272 (377)
Q Consensus 247 ~~~l~~k~~~L~~lG~s-~~~v~~~i~ 272 (377)
++..+.+++-|.+|||+ ++.+.+.+.
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~ 40 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALR 40 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 34556677777777775 444344444
No 54
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=29.24 E-value=50 Score=23.34 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=28.4
Q ss_pred HHHhHhhCCCChhhHHHHHhhcc--CCCCCCChHHHHHHHHhCCCChHHHHHHHH
Q 047553 39 LNFLIKTLNIPKSRALPISNKFS--RIKSLEKPETVRQFLHNVGFSDTHIQLTVT 91 (377)
Q Consensus 39 v~~L~~~~Gls~~~~~~i~~~~P--~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~ 91 (377)
++|. -++|++...+++-...+- ++...--++-.-+.|+++|+...||-++.+
T Consensus 6 f~FF-l~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 6 FEFF-LNCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHH-HHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred HHHH-HHcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 3555 467888877765554331 121100111124567788888777776654
No 55
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.18 E-value=53 Score=23.97 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=26.5
Q ss_pred hhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCC
Q 047553 37 IFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFS 82 (377)
Q Consensus 37 ~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~ 82 (377)
..|.-| ...||+.+++.++++.. ..+++..++||.++..+
T Consensus 23 ~~I~qL-~~MGF~~~~a~~AL~~~-----n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 23 RLIKQL-TDMGFPREPAEEALKSN-----NMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHH-HHHTCCHHHHHHHHHHT-----TSCHHHHHHHHHTTSCC
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHHCcCC
Confidence 345566 56788888887777433 24788888888766544
No 56
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.11 E-value=57 Score=23.69 Aligned_cols=38 Identities=11% Similarity=0.296 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 047553 252 RKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEI 296 (377)
Q Consensus 252 ~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~ 296 (377)
.+++-|.+|||+.+++.+.+..+- .+++.-++||.+.+
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t~-------~nve~A~ewL~~~~ 68 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLNH-------MSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCC
Confidence 356778889999999988888751 24667789998754
No 57
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.00 E-value=1e+02 Score=21.75 Aligned_cols=43 Identities=7% Similarity=-0.033 Sum_probs=30.4
Q ss_pred CCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCC
Q 047553 33 STNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVG 80 (377)
Q Consensus 33 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG 80 (377)
..+...|+-| ..+||+..++.++++.. ...+++..++||.+..
T Consensus 7 ~~~e~~v~~L-~~MGF~~~~a~~AL~~t----~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 7 GLDESVIIQL-VEMGFPMDACRKAVYYT----GNSGAEAAMNWVMSHM 49 (74)
T ss_dssp SSCHHHHHHH-HHHSCCHHHHHHHHHHH----TSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HHcCCCHHHHHHHHHHh----CCCCHHHHHHHHHhCC
Confidence 3566678888 56888888888887655 1125888888887643
No 58
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.46 E-value=59 Score=23.73 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHh
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKE 295 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~ 295 (377)
.++++-|.+|||+++++.+.+..+= ..+..-++||..+
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n-------~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNN-------MNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHC
Confidence 5678889999999998888774322 2477778888874
No 59
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=26.14 E-value=46 Score=25.85 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=30.0
Q ss_pred ChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCChHHHHHHHHhCCC
Q 047553 49 PKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPT 95 (377)
Q Consensus 49 s~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~~~P~ 95 (377)
+.-++.+.+ |.+...-....+-+|-+.+|++..+|..+-..+|.
T Consensus 3 ~dvdl~~~i---~~Iae~m~~~~wK~laR~LGlse~~Id~I~~d~~~ 46 (115)
T 3ezq_A 3 SDVDLSKYI---TTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQ 46 (115)
T ss_dssp HHHHHHHHH---HHHHHTSCHHHHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred ccccHHHHH---HHHHHHcCHHHHHHHHHHcCCCHhhHHHHHHcCCC
Confidence 334444443 33333345667778888999999999999988876
No 60
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=26.01 E-value=1.7e+02 Score=21.17 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=19.6
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHhCCC
Q 047553 69 PETVRQFLHNVGFSDTHIQLTVTSRPT 95 (377)
Q Consensus 69 ~~~~l~~L~~lG~~~~~i~~ii~~~P~ 95 (377)
....-+|-+.+|+++.+|..+-..+|.
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~ 38 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQ 38 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCC
Confidence 445566777788888888888777775
No 61
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.93 E-value=1e+02 Score=22.28 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=24.2
Q ss_pred CCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 34 TNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 34 ~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
.+...|.-| .++||+..++.++++.. ..+++..++||.+.
T Consensus 28 ~~e~~i~~L-~~MGF~~~~a~~AL~~t-----~~nve~A~ewL~~~ 67 (83)
T 2dai_A 28 VDEAALRQL-TEMGFPENRATKALQLN-----HMSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHH-HHHTCCHHHHHHHHHHT-----TSCHHHHHHHHHHG
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHHC
Confidence 455566666 45777777766666543 13666666776543
No 62
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.92 E-value=93 Score=22.60 Aligned_cols=38 Identities=16% Similarity=-0.006 Sum_probs=22.1
Q ss_pred CchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHh
Q 047553 35 NFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHN 78 (377)
Q Consensus 35 ~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~ 78 (377)
+...|.-| -.+||+.+++.++++.. ..+++..++||.+
T Consensus 29 ~ee~I~~L-v~MGF~~~~A~~AL~~t-----~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQL-VYMGFDTVVAEAALRVF-----GGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHH-HHHSCCHHHHHHHHHHT-----TTCHHHHHHHHHH
T ss_pred CHHHHHHH-HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 34456666 45677666666666544 1356666666654
No 63
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.93 E-value=97 Score=20.36 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=15.5
Q ss_pred hHHHhHhhCCCChhhH-HHHHhhccCCCCCCChHHHHHHHHh
Q 047553 38 FLNFLIKTLNIPKSRA-LPISNKFSRIKSLEKPETVRQFLHN 78 (377)
Q Consensus 38 ~v~~L~~~~Gls~~~~-~~i~~~~P~ll~~~~~~~~l~~L~~ 78 (377)
.++-| .++||+..+. .+++... ..+++..+++|.+
T Consensus 12 ~l~~L-~~MGF~d~~~n~~AL~~~-----~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 12 QLEQL-RSMGFLNREANLQALIAT-----GGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHH-HHHTCCCHHHHHHHHHHH-----TSCHHHHHHHHHH
T ss_pred HHHHH-HHcCCCcHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 34555 4555544442 3333222 1355555555543
No 64
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=23.87 E-value=1.4e+02 Score=22.94 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=10.8
Q ss_pred HhCCCChHHHHHHHHhCC
Q 047553 77 HNVGFSDTHIQLTVTSRP 94 (377)
Q Consensus 77 ~~lG~~~~~i~~ii~~~P 94 (377)
+.+|++..+|..|-..+|
T Consensus 43 R~LGlse~dId~I~~~~p 60 (115)
T 2o71_A 43 LSLGLSQTDIYRCKANHP 60 (115)
T ss_dssp HHTTCCHHHHHHHHHHCT
T ss_pred HHcCCCHHHHHHHHHHCC
Confidence 455666666666666665
No 65
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.44 E-value=56 Score=23.23 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHH
Q 047553 249 TFGRKLELFRSYGFS-KEEVLQMFR 272 (377)
Q Consensus 249 ~l~~k~~~L~~lG~s-~~~v~~~i~ 272 (377)
..+.+++-|.+|||+ ++.+.+.+.
T Consensus 28 ~ye~qi~qL~eMGF~dr~~~~~AL~ 52 (74)
T 1vej_A 28 RYQQELEELKALGFANRDANLQALV 52 (74)
T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 345556666666663 444344433
No 66
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.33 E-value=79 Score=22.94 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 047553 252 RKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEI 296 (377)
Q Consensus 252 ~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~ 296 (377)
.+++-|.+|||+.+.+.+.+...-. .++..-++||..++
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~n------~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 31 EIVAQLVSMGFSQLHCQKAAINTSN------AGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTT------CCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHcC------CCHHHHHHHHHhCC
Confidence 4567788899999988887765311 24667789998754
No 67
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=22.14 E-value=71 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Q 047553 248 ETFGRKLELFRSYGFSKEEVLQMFRKA 274 (377)
Q Consensus 248 ~~l~~k~~~L~~lG~s~~~v~~~i~~~ 274 (377)
...+.||+-|.+|||+++++..++.++
T Consensus 161 ~~~eekV~~l~~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 161 PEYTKKIENLCAMGFDRNAVIVALSSK 187 (201)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456778888889999999888887775
No 68
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=22.11 E-value=59 Score=26.51 Aligned_cols=27 Identities=11% Similarity=0.098 Sum_probs=17.2
Q ss_pred hhhHHHHHHhcCCCCchhhhhhhcccc
Q 047553 105 LKPKIEFFQHLGLVGSDLGKFISKNPS 131 (377)
Q Consensus 105 l~~~i~fL~~lG~s~~~l~~ii~~~P~ 131 (377)
+....+.|...|+++.+++.++.-+|.
T Consensus 90 ~~~l~e~L~~~~L~~~E~a~L~NL~P~ 116 (152)
T 2c35_A 90 IASVRSLLLQKKLHKFELACLANLCPE 116 (152)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHhcCCCHHHHHHhccCCCC
Confidence 445555556666777777777776665
No 69
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=21.79 E-value=3.2e+02 Score=22.02 Aligned_cols=136 Identities=13% Similarity=0.042 Sum_probs=68.5
Q ss_pred HHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHH
Q 047553 108 KIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEY 187 (377)
Q Consensus 108 ~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~ 187 (377)
.+.+|..-.-|..+|.+-+.+. .++ ++.+...+++|.+.|.-+ +...+....+.-.-=+.+ -.....-
T Consensus 23 Al~~Ls~r~~s~~EL~~KL~~k----g~~-~e~Ie~vl~~l~~~g~ld--D~rfA~~~v~~~~~~~~G-----~~~I~~e 90 (162)
T 3dfg_A 23 ALGLLVHREHSKKELNRKLQAR----GIE-PEAAQAAVERLAGEGWQD--DVRFAASVVRNRASSGYG-----PLHIRAE 90 (162)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHT----TCC-HHHHHHHHHHHHHTTSCC--HHHHHHHHHHHHHTTTCC-----HHHHHHH
T ss_pred HHHHhhchhhhHHHHHHHHHhc----CCC-HHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHcccc-----HHHHHHH
Confidence 3344443444455554444332 122 225667777888887763 555544443321100111 2334445
Q ss_pred HHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHH-hcCCCCchhhHHHHHHHHHhCCHHHHHHH-HHHHHHcCCCHH
Q 047553 188 LKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLL-DMGFSTNSRMFVYGLVVLSCLNEETFGRK-LELFRSYGFSKE 265 (377)
Q Consensus 188 L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~-~lG~~~~~~~~~~~p~~l~~~s~~~l~~k-~~~L~~lG~s~~ 265 (377)
|+.-|++.+.|...+.... .+..+...+.+. .+|-.. ..+...+.| +.||..-||+.+
T Consensus 91 L~~KGI~~~~I~~al~~~~------~de~e~a~~l~~Kk~~~~~--------------~~~~~~k~K~~~~L~rrGF~~~ 150 (162)
T 3dfg_A 91 LGTHGLDSDAVSAAMATFE------GDWTENALDLIRRRFGEDG--------------PVDLAQRRKAADLLARRGFDGN 150 (162)
T ss_dssp HHHTTCCHHHHHHHHTTCC------SCHHHHHHHHHHHHHCTTC--------------CCSHHHHHHHHHHHHHTTCCHH
T ss_pred HHHcCCCHHHHHHHHHhCc------HhHHHHHHHHHHHhcCCCC--------------CCCHHHHHHHHHHHHHCCCCHH
Confidence 7778999888888776542 111222222222 222100 112233334 678889999999
Q ss_pred HHHHHHHhCC
Q 047553 266 EVLQMFRKAP 275 (377)
Q Consensus 266 ~v~~~i~~~P 275 (377)
.|..++...|
T Consensus 151 ~I~~~l~~~~ 160 (162)
T 3dfg_A 151 SIRLATRFDL 160 (162)
T ss_dssp HHHHHTTC--
T ss_pred HHHHHHhcCc
Confidence 9888776544
No 70
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.75 E-value=1.7e+02 Score=21.02 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=28.5
Q ss_pred CCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 33 STNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 33 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
..+...|.-| .++||+...+.+++... ...+++..++||.++
T Consensus 27 ~~~e~~v~~L-~~MGF~~~~a~~AL~~t----~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 27 VANEEIVAQL-VSMGFSQLHCQKAAINT----SNAGVEEAMNWLLSH 68 (84)
T ss_dssp CCCHHHHHHH-HHHTCCHHHHHHHHHHT----TTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HHcCCCHHHHHHHHHHH----cCCCHHHHHHHHHhC
Confidence 3466677788 56888888887776543 113677788888654
No 71
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=21.68 E-value=87 Score=21.24 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.5
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHhC
Q 047553 69 PETVRQFLHNVGFSDTHIQLTVTSR 93 (377)
Q Consensus 69 ~~~~l~~L~~lG~~~~~i~~ii~~~ 93 (377)
.+..++-|..+|+++.++.+++..-
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3558888999999999999988763
No 72
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=21.39 E-value=2.6e+02 Score=24.92 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=21.5
Q ss_pred chhHHHhHhhCCCChhhHHHHHhhccCC
Q 047553 36 FIFLNFLIKTLNIPKSRALPISNKFSRI 63 (377)
Q Consensus 36 ~~~v~~L~~~~Gls~~~~~~i~~~~P~l 63 (377)
+.++.-|+..+|++++.+..++..+-++
T Consensus 350 nrtlatlidehglspdaadeliehfesi 377 (519)
T 2csb_A 350 NRTLATLIDEHGLSPDAADELIEHFESI 377 (519)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHSSH
T ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 4466788899999999988888766443
No 73
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=20.49 E-value=2.6e+02 Score=22.57 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=23.2
Q ss_pred cccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHHhc
Q 047553 128 KNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRC 168 (377)
Q Consensus 128 ~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~ 168 (377)
..|..+.++.+ ++...+--|..-|.+ ..+|+-+++-.
T Consensus 21 ~~P~W~~~~~e-eVe~~I~klakkG~t---pSqIG~iLRD~ 57 (151)
T 3u5c_N 21 NAPAWFKLSSE-SVIEQIVKYARKGLT---PSQIGVLLRDA 57 (151)
T ss_dssp SCCSSCCSCHH-HHHHHHHHHHTTTCC---HHHHHHHHHHH
T ss_pred CCCCCcCCCHH-HHHHHHHHHHHCCCC---HHHhhhHHhcc
Confidence 45666666655 566666666666666 66666666554
Done!