Query 047553
Match_columns 377
No_of_seqs 203 out of 1243
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 21:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047553.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047553hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 74.4 1.1 8E-05 26.8 2.7 26 249-274 3-28 (41)
2 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 68.3 5.7 0.00042 24.6 5.3 41 33-78 10-50 (51)
3 d1whca_ a.5.2.1 (A:) UBA/UBX 3 59.9 11 0.00084 24.3 5.8 45 31-80 5-49 (64)
4 d2crna1 a.5.2.1 (A:8-58) Suppr 57.2 7.2 0.00053 24.1 4.2 41 35-80 2-42 (51)
5 d2g3qa1 a.5.2.1 (A:1339-1381) 56.6 3.6 0.00027 24.4 2.4 22 254-275 8-29 (43)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 53.8 15 0.0011 23.6 5.6 42 32-79 6-47 (63)
7 d1oqya1 a.5.2.1 (A:160-200) DN 53.2 7.7 0.00056 22.8 3.6 26 68-93 3-28 (41)
8 d2hsga1 a.35.1.5 (A:2-58) Gluc 52.5 8.7 0.00064 24.3 4.1 42 188-232 8-49 (57)
9 d1vg5a_ a.5.2.1 (A:) Rhomboid 50.8 16 0.0012 24.2 5.5 42 32-79 26-67 (73)
10 d1wiva_ a.5.2.1 (A:) Ubiquitin 49.3 16 0.0011 24.3 5.2 43 31-79 25-67 (73)
11 d2g3qa1 a.5.2.1 (A:1339-1381) 48.9 9.3 0.00068 22.6 3.3 36 36-77 5-40 (43)
12 d1qpza1 a.35.1.5 (A:2-58) Puri 46.8 12 0.00087 23.6 4.0 43 188-233 7-49 (57)
13 d1uxda_ a.35.1.5 (A:) Fructose 45.4 7 0.00051 25.0 2.7 44 189-232 8-51 (59)
14 d1efaa1 a.35.1.5 (A:2-60) Lac 43.7 13 0.00094 23.6 3.8 42 189-233 10-51 (59)
15 d1wiva_ a.5.2.1 (A:) Ubiquitin 41.8 11 0.00083 25.0 3.5 38 251-295 30-67 (73)
16 d1vg5a_ a.5.2.1 (A:) Rhomboid 40.8 9.7 0.00071 25.4 3.0 38 251-295 30-67 (73)
17 d1veka_ a.5.2.1 (A:) Ubiquitin 40.5 18 0.0013 24.6 4.5 43 33-80 27-69 (84)
18 d1wgna_ a.5.2.1 (A:) Ubiquitin 39.9 8 0.00058 25.1 2.3 38 251-295 20-57 (63)
19 d1z96a1 a.5.2.1 (A:295-332) UB 33.2 29 0.0021 18.9 3.6 24 250-273 2-25 (38)
20 d2csba4 a.60.2.4 (A:465-519) T 32.8 44 0.0032 19.6 5.3 46 41-89 5-51 (55)
21 d1wjia_ a.5.2.1 (A:) Tudor dom 32.3 20 0.0015 22.9 3.4 38 252-296 11-48 (63)
22 d1k6ya1 a.4.10.1 (A:1-46) N-te 32.3 16 0.0012 22.0 2.6 24 39-62 19-42 (46)
23 d1rxwa1 a.60.7.1 (A:220-324) F 30.2 66 0.0048 22.3 6.5 75 47-127 23-101 (105)
24 d1zcza1 c.24.1.3 (A:1-157) IMP 29.6 21 0.0015 27.4 3.7 36 108-145 34-69 (157)
25 d1cuka1 a.5.1.1 (A:156-203) DN 28.0 39 0.0029 20.2 4.0 27 249-275 4-30 (48)
26 d1sfua_ a.4.5.19 (A:) 34L {Yab 27.0 31 0.0023 22.6 3.6 45 47-91 2-46 (70)
27 d1fada_ a.77.1.2 (A:) FADD (Mo 26.9 85 0.0062 21.0 6.8 29 248-276 18-47 (95)
28 d1rw1a_ c.47.1.12 (A:) Hypothe 25.8 18 0.0013 25.8 2.6 18 158-175 75-92 (114)
29 d2q0ta1 a.152.1.1 (A:1-257) Hy 25.4 1.6E+02 0.012 23.7 10.1 217 39-281 14-237 (257)
30 d1qpza1 a.35.1.5 (A:2-58) Puri 24.8 36 0.0026 21.2 3.5 45 78-126 9-53 (57)
31 d2cwqa1 a.152.1.4 (A:1-117) Hy 23.5 44 0.0032 23.9 4.4 85 180-272 4-96 (117)
32 d1sfxa_ a.4.5.50 (A:) Hypothet 23.2 83 0.006 21.7 5.9 18 216-233 6-23 (109)
33 d3e46a1 a.5.2.1 (A:157-198) Ub 23.1 61 0.0045 18.1 4.0 25 249-273 5-29 (42)
34 d1efaa1 a.35.1.5 (A:2-60) Lac 22.6 39 0.0028 21.2 3.4 45 78-126 11-55 (59)
35 d1a9xa1 a.92.1.1 (A:403-555) C 21.3 24 0.0017 27.0 2.5 20 45-64 42-61 (153)
36 d2f3na1 a.60.1.2 (A:2-65) Sh3 21.0 34 0.0025 21.3 3.0 14 69-82 6-19 (64)
37 d1y14a_ a.60.8.2 (A:) RNA poly 20.1 58 0.0043 25.3 4.6 24 34-57 113-136 (176)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.38 E-value=1.1 Score=26.79 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhC
Q 047553 249 TFGRKLELFRSYGFSKEEVLQMFRKA 274 (377)
Q Consensus 249 ~l~~k~~~L~~lG~s~~~v~~~i~~~ 274 (377)
..+.+|+-|.+|||+++++.+.+.+.
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45667888888999988888877764
No 2
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.27 E-value=5.7 Score=24.64 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHh
Q 047553 33 STNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHN 78 (377)
Q Consensus 33 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~ 78 (377)
.++...|+.| -+.||+...+.+.+... ...+++..++||-+
T Consensus 10 ~~~~~~l~~L-~~MGF~~~~a~~AL~~t----~n~~ve~A~~WLl~ 50 (51)
T d2cpwa1 10 IKHGSALDVL-LSMGFPRARAQKALAST----GGRSVQTACDWLFS 50 (51)
T ss_dssp SSCCCHHHHH-HHHTCCHHHHHHHHHHT----TTSCHHHHHHHHHS
T ss_pred CCCHHHHHHH-HHcCCCHHHHHHHHHHH----CCCCHHHHHHHHHc
Confidence 3667779999 57999999999887644 22478888888864
No 3
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=59.86 E-value=11 Score=24.30 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=33.4
Q ss_pred CCCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCC
Q 047553 31 PNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVG 80 (377)
Q Consensus 31 ~~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG 80 (377)
++..+..+|..| .+.||+...+.+.+... ...+++..++||.++.
T Consensus 5 ~s~~d~~~l~~L-~~MGF~~~~a~~AL~~t----~n~~~e~A~~Wl~~h~ 49 (64)
T d1whca_ 5 SSGAELTALESL-IEMGFPRGRAEKALALT----GNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CCCCCCCHHHHH-HTTTCCHHHHHHHHHHH----TSCCHHHHHHHHHHHT
T ss_pred CCccCHHHHHHH-HHcCCCHHHHHHHHHHh----CCCCHHHHHHHHHHCC
Confidence 355667788999 67999999999887654 2236888999987643
No 4
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.19 E-value=7.2 Score=24.11 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=30.1
Q ss_pred CchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCC
Q 047553 35 NFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVG 80 (377)
Q Consensus 35 ~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG 80 (377)
++..|+-| -+.||+...+.+.+... ...+++..++||.++.
T Consensus 2 ~p~~v~~L-~~MGF~~~~a~~Al~~t----~n~~ve~A~~Wl~~h~ 42 (51)
T d2crna1 2 SPSLLEPL-LAMGFPVHTALKALAAT----GRKTAEEALAWLHDHC 42 (51)
T ss_dssp SCSSHHHH-HHTSCCHHHHHHHHHHH----TSCCHHHHHHHHHHHS
T ss_pred CHHHHHHH-HHcCCCHHHHHHHHHHH----CCCCHHHHHHHHHHcC
Confidence 45668888 57999999998887543 1247888888887653
No 5
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=56.57 E-value=3.6 Score=24.40 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=17.7
Q ss_pred HHHHHHcCCCHHHHHHHHHhCC
Q 047553 254 LELFRSYGFSKEEVLQMFRKAP 275 (377)
Q Consensus 254 ~~~L~~lG~s~~~v~~~i~~~P 275 (377)
|+-|.+|||++++..+.+.++-
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~~ 29 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKCN 29 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHcC
Confidence 5667789999999888888753
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.80 E-value=15 Score=23.55 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=29.6
Q ss_pred CCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 32 NSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 32 ~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
...+...|+-| -..||+...+.+.+... . .+++..++||.+.
T Consensus 6 ~~~d~~~v~~L-~~MGF~~~~a~~AL~~~----~-~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 6 SGVDEKALKHI-TEMGFSKEASRQALMDN----G-NNLEAALNVLLTS 47 (63)
T ss_dssp CSSCHHHHHHH-HTTTCCHHHHHHHHHHT----T-SCHHHHHHHHHHH
T ss_pred CccCHHHHHHH-HHcCCCHHHHHHHHHHh----C-CCHHHHHHHHHHC
Confidence 44566677888 67888888888777654 1 4788888887654
No 7
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.20 E-value=7.7 Score=22.81 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=18.1
Q ss_pred ChHHHHHHHHhCCCChHHHHHHHHhC
Q 047553 68 KPETVRQFLHNVGFSDTHIQLTVTSR 93 (377)
Q Consensus 68 ~~~~~l~~L~~lG~~~~~i~~ii~~~ 93 (377)
+.++.++-|.++||++.+..+.+...
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45666777777788777777766554
No 8
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=52.51 E-value=8.7 Score=24.31 Aligned_cols=42 Identities=12% Similarity=0.269 Sum_probs=32.4
Q ss_pred HHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCch
Q 047553 188 LKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNS 232 (377)
Q Consensus 188 L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~ 232 (377)
-+..|++...+.+.+...|. .++++-+...+..+++|+.++.
T Consensus 8 A~~agvS~~TVSr~Ln~~~~---Vs~~tr~rV~~aa~~lgY~pn~ 49 (57)
T d2hsga1 8 AREASVSMATVSRVVNGNPN---VKPSTRKKVLETIERLGYRPNA 49 (57)
T ss_dssp HHHTTSCHHHHHHHHTTCTT---SCHHHHHHHHHHHHHHTCCSCH
T ss_pred HHHHCcCHHHHHHHhCCCCc---CCHHHHHHHHHHHHHHCcCCCH
Confidence 35689999999999987775 3677777777778888888774
No 9
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=50.80 E-value=16 Score=24.21 Aligned_cols=42 Identities=5% Similarity=-0.054 Sum_probs=30.1
Q ss_pred CCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 32 NSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 32 ~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
..++...|+-| ..+||+.+++.+.+..+ ..+++..++||.+.
T Consensus 26 ~~~~ee~i~~L-~~MGF~~~~a~~AL~~~-----~~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 26 VAASEEQIQKL-VAMGFDRTQVEVALAAA-----DDDLTVAVEILMSQ 67 (73)
T ss_dssp SCCCHHHHHHH-HTTTCCHHHHHHHHHHH-----TSCHHHHHHHHHTC
T ss_pred cCcCHHHHHHH-HHhCCCHHHHHHHHHHh-----CCCHHHHHHHHHhC
Confidence 33556677888 67888888888777665 25788888888654
No 10
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=49.32 E-value=16 Score=24.28 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=29.4
Q ss_pred CCCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhC
Q 047553 31 PNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79 (377)
Q Consensus 31 ~~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~l 79 (377)
+..++...|.-| .++||+.+++.++++.. . .+++..++||.+.
T Consensus 25 ~~~~d~~~i~~L-~~MGF~~~~a~~AL~~~----~-~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 25 TSDIDQSSVDTL-LSFGFAEDVARKALKAS----G-GDIEKATDWVFNN 67 (73)
T ss_dssp SCSSCHHHHHHH-HHHTCCHHHHHHHHHHT----T-SCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHH-HhcCCCHHHHHHHHHHc----C-CCHHHHHHHHHcC
Confidence 344566667777 56888888887777655 2 4677777777654
No 11
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=48.93 E-value=9.3 Score=22.55 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=24.5
Q ss_pred chhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHH
Q 047553 36 FIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLH 77 (377)
Q Consensus 36 ~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~ 77 (377)
..+|+-| .+.||+.+++.+++.++ + -+.+..+++|-
T Consensus 5 ~~ai~eL-~~MGF~e~~A~~AL~k~----~-wnleaAtN~LL 40 (43)
T d2g3qa1 5 SLAVEEL-SGMGFTEEEAHNALEKC----N-WDLEAATNFLL 40 (43)
T ss_dssp HHHHHHH-HTTTSCHHHHHHHHHHH----T-SCHHHHHHHHH
T ss_pred HHHHHHH-HhcCCCHHHHHHHHHHc----C-CCHHHHHHHHH
Confidence 4567777 67888888888887776 1 35555565553
No 12
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=46.76 E-value=12 Score=23.64 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchh
Q 047553 188 LKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSR 233 (377)
Q Consensus 188 L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~ 233 (377)
-+..|++...+.+.+...|. .++++-+...+..+++|+.++..
T Consensus 7 A~~agVS~sTVSr~ln~~~~---vs~~tr~rV~~~a~~lgY~pn~~ 49 (57)
T d1qpza1 7 AKRANVSTTTVSHVINKTRF---VAEETRNAVWAAIKELHYSPSAV 49 (57)
T ss_dssp HHHHTSCHHHHHHHHHTCSC---CCHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHCcCHHHHHHHHCCCCc---cCHHHHHHHHHHHHHHCCCCCHH
Confidence 35589999999998887764 36667676777778888887743
No 13
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=45.37 E-value=7 Score=24.97 Aligned_cols=44 Identities=7% Similarity=0.251 Sum_probs=29.3
Q ss_pred HHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCch
Q 047553 189 KSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNS 232 (377)
Q Consensus 189 ~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~ 232 (377)
+..|++...+.+++...|.-...++++-+...+..+++|+.++.
T Consensus 8 ~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (59)
T d1uxda_ 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (59)
T ss_dssp HHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCS
T ss_pred HHHCcCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHHHCCCcCH
Confidence 45788888888887766543334566666666777777877663
No 14
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.70 E-value=13 Score=23.65 Aligned_cols=42 Identities=7% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchh
Q 047553 189 KSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSR 233 (377)
Q Consensus 189 ~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~ 233 (377)
+..|++...+.+.+...+.+ ++++.+...+..+++|+.++..
T Consensus 10 ~~agvS~sTVSr~l~~~~~v---s~~tr~rI~~~a~~lgY~pn~~ 51 (59)
T d1efaa1 10 EYAGVSYQTVSRVVNQASHV---SAKTREKVEAAMAELNYIPNRV 51 (59)
T ss_dssp HTTTSCHHHHHHHHTTCSSC---CTHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHCCCHHHHHHHHCCCCcC---CHHHHHHHHHHHHHHCCCcCHH
Confidence 45899999999988776653 6777777777778888887743
No 15
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=41.85 E-value=11 Score=25.04 Aligned_cols=38 Identities=8% Similarity=0.343 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHh
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKE 295 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~ 295 (377)
...++-|.+|||+++++.+.+..+- .++..-++||...
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHcC-------CCHHHHHHHHHcC
Confidence 3457788899999999998888762 2466778888764
No 16
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=40.77 E-value=9.7 Score=25.39 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHh
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKE 295 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~ 295 (377)
++.++-|.+|||+++++.+.+..+- .+++.-++||...
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 4457778889999998887776632 2466778888764
No 17
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=40.49 E-value=18 Score=24.64 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=32.7
Q ss_pred CCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCC
Q 047553 33 STNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVG 80 (377)
Q Consensus 33 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG 80 (377)
.+|...|..| ...||+...+.+++... ...+++..++||.++.
T Consensus 27 ~~d~~~v~~L-~~MGF~~~~a~~AL~~t----~n~~~e~A~~Wl~~h~ 69 (84)
T d1veka_ 27 VANEEIVAQL-VSMGFSQLHCQKAAINT----SNAGVEEAMNWLLSHM 69 (84)
T ss_dssp CCCHHHHHHH-HHHTCCHHHHHHHHHHT----TTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HHcCCCHHHHHHHHHHH----cCCCHHHHHHHHHHcC
Confidence 4677788999 67999999998877543 2247899999987654
No 18
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.87 E-value=8 Score=25.06 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHh
Q 047553 251 GRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKE 295 (377)
Q Consensus 251 ~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~ 295 (377)
++.|+-|.+|||+++++.+.+..+= .+++.-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhC
Confidence 4568889999999999888877631 2466778888764
No 19
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=33.18 E-value=29 Score=18.88 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Q 047553 250 FGRKLELFRSYGFSKEEVLQMFRK 273 (377)
Q Consensus 250 l~~k~~~L~~lG~s~~~v~~~i~~ 273 (377)
+..|+.-|.++||++-+..+.+-.
T Consensus 2 lnskiaqlvsmgfdpleaaqalda 25 (38)
T d1z96a1 2 LNSKIAQLVSMGFDPLEAAQALDA 25 (38)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHcCCCHHHHHHHHhh
Confidence 356788888999998777766544
No 20
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=32.85 E-value=44 Score=19.60 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=32.6
Q ss_pred HhHhhCCCChhhHHHHHhhccCCCCCCChH-HHHHHHHhCCCChHHHHHH
Q 047553 41 FLIKTLNIPKSRALPISNKFSRIKSLEKPE-TVRQFLHNVGFSDTHIQLT 89 (377)
Q Consensus 41 ~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~-~~l~~L~~lG~~~~~i~~i 89 (377)
-|++-.|+..+.+.++++++--. .++. .-++-|+.-|++++||+.+
T Consensus 5 slisirgidreraerllkkyggy---skvreagveelredgltdaqirel 51 (55)
T d2csba4 5 SLISIRGIDRERAERLLKKYGGY---SKVREAGVEELREDGLTDAQIREL 51 (55)
T ss_dssp HHHTSTTCCHHHHHHHHHHHTSH---HHHHTSCHHHHHHTTCCHHHHHHH
T ss_pred ceeeeecccHHHHHHHHHHhcCh---hHHHHhhHHHHHHccccHHHHHHh
Confidence 35566799999999998877221 1222 2367788999999998865
No 21
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.31 E-value=20 Score=22.90 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 047553 252 RKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEI 296 (377)
Q Consensus 252 ~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~ 296 (377)
..++-|.+|||+++++.+.+..+- ..++.-++||.+..
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 11 KALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCC
Confidence 457778899999999988887752 24777889998854
No 22
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=32.29 E-value=16 Score=22.00 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.0
Q ss_pred HHHhHhhCCCChhhHHHHHhhccC
Q 047553 39 LNFLIKTLNIPKSRALPISNKFSR 62 (377)
Q Consensus 39 v~~L~~~~Gls~~~~~~i~~~~P~ 62 (377)
+.+|...+|++...+..|+..+|.
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~C~~ 42 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVASCDK 42 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 678888899999999999998875
No 23
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.25 E-value=66 Score=22.34 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=36.9
Q ss_pred CCChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCC---CchhhHHHHH-HhcCCCCchh
Q 047553 47 NIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVD---KTLKPKIEFF-QHLGLVGSDL 122 (377)
Q Consensus 47 Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~---~~l~~~i~fL-~~lG~s~~~l 122 (377)
|+-+..|.++++++ .+++..++.+...........+++...|.....+.+ -......+|| .+.|++...+
T Consensus 23 GIG~ktA~kli~~~------gsle~i~~~~~~~~~~~~~~r~l~~~~~v~~~~~l~~~~~d~~~l~~fL~~e~~F~~~rv 96 (105)
T d1rxwa1 23 GVGVKKALNYIKTY------GDIFRALKALKVNIDHVEEIRNFFLNPPVTDDYRIEFREPDFEKAIEFLCEEHDFSRERV 96 (105)
T ss_dssp TCCHHHHHHHHHHH------SSHHHHHHHHTC----CHHHHHHHHSCCCCCCCCCCCCCCCHHHHHHHHTTTTCCCHHHH
T ss_pred CcCHHHHHHHHHHh------CCHHHHHHHHHhhHHHHHHHHHHhcCCCCCChHhhccCCCCHHHHHHHHHHHhCCCHHHH
Confidence 56666677777766 345555555554444445555665544332111111 0133445666 4577776666
Q ss_pred hhhhh
Q 047553 123 GKFIS 127 (377)
Q Consensus 123 ~~ii~ 127 (377)
.+.+.
T Consensus 97 ~~~l~ 101 (105)
T d1rxwa1 97 EKALE 101 (105)
T ss_dssp HHHHG
T ss_pred HHHHH
Confidence 55553
No 24
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=29.58 E-value=21 Score=27.44 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHH
Q 047553 108 KIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCV 145 (377)
Q Consensus 108 ~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v 145 (377)
..++|++.|++-.++.+ ++.+|.+|.-.+. +|-|++
T Consensus 34 Tak~L~~~Gi~v~~Vs~-~Tg~peil~gRvK-TLhp~i 69 (157)
T d1zcza1 34 TAKFLKSNGIEANDVST-ITGFENLLGGLVK-TLHPEI 69 (157)
T ss_dssp HHHHHHHTTCCCEEGGG-GSCCCCGGGGTTT-TCCHHH
T ss_pred HHHHHHHhhhhhhHHHH-HhhHHHHHHhhhc-cchHHH
Confidence 55777777777777766 4577777777764 677765
No 25
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.96 E-value=39 Score=20.24 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCC
Q 047553 249 TFGRKLELFRSYGFSKEEVLQMFRKAP 275 (377)
Q Consensus 249 ~l~~k~~~L~~lG~s~~~v~~~i~~~P 275 (377)
...+-++-|..+|++..++.+++.+-.
T Consensus 4 ~~~eAi~AL~~LGY~~~ea~~av~~i~ 30 (48)
T d1cuka1 4 AEQEAVARLVALGYKPQEASRMVSKIA 30 (48)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 344556778889999999999988753
No 26
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=26.99 E-value=31 Score=22.56 Aligned_cols=45 Identities=7% Similarity=0.058 Sum_probs=28.3
Q ss_pred CCChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCChHHHHHHHH
Q 047553 47 NIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVT 91 (377)
Q Consensus 47 Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~ 91 (377)
.+++.++...+++.=..+...+.-..++.=+.+|+++.+|.+.+-
T Consensus 2 ~~~~~~i~~lvk~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~LY 46 (70)
T d1sfua_ 2 TVNDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLY 46 (70)
T ss_dssp CCCSHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCCchHHHHHHHhCCCHHHHHHHHH
Confidence 466777777776652333334444456666788888888877653
No 27
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.91 E-value=85 Score=21.00 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=21.9
Q ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHHhCCc
Q 047553 248 ETFGRKLELFR-SYGFSKEEVLQMFRKAPL 276 (377)
Q Consensus 248 ~~l~~k~~~L~-~lG~s~~~v~~~i~~~P~ 276 (377)
+.+.....-|. .+|++..+|..+-..+|.
T Consensus 18 ~~lg~~Wk~Lar~Lgls~~~I~~I~~~~~~ 47 (95)
T d1fada_ 18 DNVGRDWKRLARELKVSEAKMDGIEEKYPR 47 (95)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred HHHHHhHHHHHHHcCCCHHHHHHHHHHCCC
Confidence 35555566664 899999999998888874
No 28
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.80 E-value=18 Score=25.81 Aligned_cols=18 Identities=0% Similarity=-0.221 Sum_probs=9.5
Q ss_pred chHHHHHHHhcccccccc
Q 047553 158 NEDLTRVFRRCCWNLIMD 175 (377)
Q Consensus 158 ~~~i~~~l~~~P~lL~~~ 175 (377)
++++..++..+|.++...
T Consensus 75 ~~e~i~~i~~~P~LikRP 92 (114)
T d1rw1a_ 75 EAKAIELMLAQPSMIKRP 92 (114)
T ss_dssp HHHHHHHHHHCGGGBCSC
T ss_pred HHHHHHHHHhCcceEeCC
Confidence 455555555555555443
No 29
>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006 {Burkholderia xenovorans [TaxId: 36873]}
Probab=25.44 E-value=1.6e+02 Score=23.72 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=107.8
Q ss_pred HHHhHhhCCCChhhHHHHHhhccCCCC-CCChHHHHHHHHhCCCChHHHHHHHH-hCCCeeccCCCCchhhHHHHHHhcC
Q 047553 39 LNFLIKTLNIPKSRALPISNKFSRIKS-LEKPETVRQFLHNVGFSDTHIQLTVT-SRPTILFSDVDKTLKPKIEFFQHLG 116 (377)
Q Consensus 39 v~~L~~~~Gls~~~~~~i~~~~P~ll~-~~~~~~~l~~L~~lG~~~~~i~~ii~-~~P~lL~~~~~~~l~~~i~fL~~lG 116 (377)
.+-+.+.+|--......+....|.+.. ..++.. ..+++=.++..+ ..+|. ..=....++-...+..-+.--.+.|
T Consensus 14 ~e~~~~~~G~~~~~~~~l~~~dP~~~~~~~~~~~--~~~~~g~L~~k~-keLi~la~~~a~~~~~~~~~~~h~~~al~~G 90 (257)
T d2q0ta1 14 RDELVRLHGKASPEWDSLVRLDPRFVDAYLKFAG--VPQRRNHLDDKT-RAFIALAADACATQLYAPGVARHIERALSFG 90 (257)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHCHHHHHHHHHHHH--HHHHHCSSCHHH-HHHHHHHHHHSTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCcchHHHHHHHcCHHHHHHHHHHHH--HHhcCCCCCHHH-HHHHHHHHHHHccCCchHHHHHHHHHHHHcC
Confidence 355556677665555566655666542 011111 123344566553 22332 1111122221112566677777899
Q ss_pred CCCchhhhhhhcccccchhh-hhccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHH-HHcCCC
Q 047553 117 LVGSDLGKFISKNPSLFAAS-LERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYL-KSCGIV 194 (377)
Q Consensus 117 ~s~~~l~~ii~~~P~lL~~s-~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L-~~lG~~ 194 (377)
+++++|..++.-.| .++.. ..+-+.-..+.+.+-|+. .. ....+.+ -.+..+-+ ...|+-
T Consensus 91 ~t~~ei~E~l~~~~-~~G~~~~~~~~~~~~ev~~e~g~~---~~-----------~~~~~~~---~~~~~~~~~~~~g~~ 152 (257)
T d2q0ta1 91 ATREELIEVLELVS-TIGIHTSNVGVPVLLEVLEEEGLR---KG-----------APPLDER---RQKLKAEFETNRGYW 152 (257)
T ss_dssp CCHHHHHHHHHHHG-GGGGHHHHHHHHHHHHHHHHTTSC---CS-----------CCCCCHH---HHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHcCCC---CC-----------CCCCcch---hhHHHHHHHHHhccc
Confidence 99999999885544 34433 112244445556665654 10 0111111 22222233 336776
Q ss_pred chhHhhhhhhCCeeeEeehhhHHHHHH-HHHhcCCCCchhhHH-HHHHH-HHhCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 047553 195 GSQLSMLLVWQPRLFCYKELKIRHLVS-RLLDMGFSTNSRMFV-YGLVV-LSCLNEETFGRKLELFRSYGFSKEEVLQMF 271 (377)
Q Consensus 195 ~~~i~~ll~~~P~il~~s~~~l~~~v~-~l~~lG~~~~~~~~~-~~p~~-l~~~s~~~l~~k~~~L~~lG~s~~~v~~~i 271 (377)
...+..+....|.++. .+..... .+.+=++++.+..++ -+... ..+..+..++.-++--.+.|.|++||..++
T Consensus 153 ~~~~~~~~~~~P~~~~----~~~~~~~~~~~~~~L~~k~reLi~la~~aa~~~~~~~~l~~Hi~~al~~G~t~eEi~eal 228 (257)
T d2q0ta1 153 HPTWEGLLELDPDLFE----AYVEFSSVPWRTGVLSPKIKEFMYCAFDASATHLYVPGLKLHIRNALRYGATAEELMELL 228 (257)
T ss_dssp CHHHHHHHHHCHHHHH----HHHHHHHHHHHHCCSCHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cHHHHHHHhcCHHHHH----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666666665564321 1111111 133446777766333 12221 111234567777777889999999999887
Q ss_pred HhCCcccccC
Q 047553 272 RKAPLILKAS 281 (377)
Q Consensus 272 ~~~P~iL~~s 281 (377)
.-.+. .+.+
T Consensus 229 ~~~~~-~G~~ 237 (257)
T d2q0ta1 229 EIVSV-TGIH 237 (257)
T ss_dssp HHHGG-GGGH
T ss_pred HHHHH-cChH
Confidence 65433 3544
No 30
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.83 E-value=36 Score=21.23 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=22.8
Q ss_pred hCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhh
Q 047553 78 NVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFI 126 (377)
Q Consensus 78 ~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii 126 (377)
..|++...+.+++...|.+ +.+ +-....+...++|..+..+++-+
T Consensus 9 ~agVS~sTVSr~ln~~~~v---s~~-tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRFV---AEE-TRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHTSCHHHHHHHHHTCSCC---CHH-HHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCcc---CHH-HHHHHHHHHHHHCCCCCHHHHHH
Confidence 3466666666666655543 211 23333333345666666555544
No 31
>d2cwqa1 a.152.1.4 (A:1-117) Hypothetical protein TTHA0727 {Thermus thermophilus [TaxId: 274]}
Probab=23.52 E-value=44 Score=23.89 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=45.1
Q ss_pred chhhhHHHHHH-cC-CCchhHhhhhhhCCeeeEeehhhHHHHHHHHHh-----cCCCCchhhHH-HHHHHHHhCCHHHHH
Q 047553 180 GLLRNIEYLKS-CG-IVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLD-----MGFSTNSRMFV-YGLVVLSCLNEETFG 251 (377)
Q Consensus 180 ~l~~~v~~L~~-lG-~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~-----lG~~~~~~~~~-~~p~~l~~~s~~~l~ 251 (377)
+-+..++-+.+ +| .-++-+..+-...|.+ ++.-.+++.. =++++.+..++ -+-... ......++
T Consensus 4 ~~e~~l~~~~~~~G~~~P~~~~~mae~~P~~-------l~~~~~~~~~~~~~~g~Ld~k~reLI~la~s~a-~gc~~c~~ 75 (117)
T d2cwqa1 4 THERVLQAMAENLGEGLPRAIPLLAEKAPGL-------LLEHGRSWTYAMPEKGALDEKTRTLILLGIALA-TGSEACVK 75 (117)
T ss_dssp SSHHHHHHHHHHHGGGCCTHHHHHHHHCHHH-------HHHHHHHHHHHSCTTCSSCHHHHHHHHHHHHHH-HTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHhChHH-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-cCChHHHH
Confidence 35556666665 67 2333343333345544 3333333322 23555554322 122222 23456667
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 047553 252 RKLELFRSYGFSKEEVLQMFR 272 (377)
Q Consensus 252 ~k~~~L~~lG~s~~~v~~~i~ 272 (377)
.-+....+.|.|++||..++.
T Consensus 76 ~h~~~A~~~G~t~eEI~Eal~ 96 (117)
T d2cwqa1 76 AMAHRAKRLGLSKEALLETLK 96 (117)
T ss_dssp HHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 677777789999999988764
No 32
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.21 E-value=83 Score=21.70 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcCCCCchh
Q 047553 216 IRHLVSRLLDMGFSTNSR 233 (377)
Q Consensus 216 l~~~v~~l~~lG~~~~~~ 233 (377)
+.+.++.|+++|+++.+.
T Consensus 6 ~~~l~~~L~~lGlt~~e~ 23 (109)
T d1sfxa_ 6 LGELVKALEKLSFKPSDV 23 (109)
T ss_dssp HHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 334445555555555543
No 33
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.12 E-value=61 Score=18.08 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHh
Q 047553 249 TFGRKLELFRSYGFSKEEVLQMFRK 273 (377)
Q Consensus 249 ~l~~k~~~L~~lG~s~~~v~~~i~~ 273 (377)
....|++-|..+||+...|...+..
T Consensus 5 eyt~kidklca~gf~knavi~alss 29 (42)
T d3e46a1 5 EYTKKIENLCAAGFDRNAVIVALSS 29 (42)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccccceeeeecc
Confidence 3456788888899998876655543
No 34
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.55 E-value=39 Score=21.22 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=20.7
Q ss_pred hCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhh
Q 047553 78 NVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFI 126 (377)
Q Consensus 78 ~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii 126 (377)
..|++..-+.+.+...|.+ +.+ +-....+...++|..+..+++.+
T Consensus 11 ~agvS~sTVSr~l~~~~~v---s~~-tr~rI~~~a~~lgY~pn~~Ar~L 55 (59)
T d1efaa1 11 YAGVSYQTVSRVVNQASHV---SAK-TREKVEAAMAELNYIPNRVAQQL 55 (59)
T ss_dssp TTTSCHHHHHHHHTTCSSC---CTH-HHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHCCCCcC---CHH-HHHHHHHHHHHHCCCcCHHHHHH
Confidence 3455555555555544443 211 22333333345555555555444
No 35
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=21.34 E-value=24 Score=26.95 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=12.9
Q ss_pred hCCCChhhHHHHHhhccCCC
Q 047553 45 TLNIPKSRALPISNKFSRIK 64 (377)
Q Consensus 45 ~~Gls~~~~~~i~~~~P~ll 64 (377)
..|+|.+++..+.+-.|.++
T Consensus 42 r~G~sveeI~elTkID~WFL 61 (153)
T d1a9xa1 42 RAGLSVDGVFNLTNIDRWFL 61 (153)
T ss_dssp HTTBCHHHHHHHHCCCHHHH
T ss_pred HcCCCHHHHHHhhCeeeHHH
Confidence 35777777777765555554
No 36
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=21.04 E-value=34 Score=21.29 Aligned_cols=14 Identities=14% Similarity=0.282 Sum_probs=7.5
Q ss_pred hHHHHHHHHhCCCC
Q 047553 69 PETVRQFLHNVGFS 82 (377)
Q Consensus 69 ~~~~l~~L~~lG~~ 82 (377)
++.+.+||.++|+.
T Consensus 6 ~~~V~~wL~~~gl~ 19 (64)
T d2f3na1 6 KFDVGDWLESIHLG 19 (64)
T ss_dssp HHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHCCCH
Confidence 34455555555553
No 37
>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.12 E-value=58 Score=25.25 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=11.4
Q ss_pred CCchhHHHhHhhCCCChhhHHHHH
Q 047553 34 TNFIFLNFLIKTLNIPKSRALPIS 57 (377)
Q Consensus 34 ~~~~~v~~L~~~~Gls~~~~~~i~ 57 (377)
..-.+|.-|++.+|+++.+++.+.
T Consensus 113 es~~~vrelL~~~~L~~fE~a~L~ 136 (176)
T d1y14a_ 113 ETVGAVIQLLKSTGLHPFEVAQLG 136 (176)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHhh
Confidence 333344444455555555555444
Done!