Query 047555
Match_columns 593
No_of_seqs 339 out of 2250
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:09:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 2E-100 4E-105 750.2 45.4 479 109-593 33-520 (663)
2 PLN03184 chloroplast Hsp70; Pr 100.0 6.3E-86 1.4E-90 737.4 63.2 514 79-593 6-520 (673)
3 PTZ00186 heat shock 70 kDa pre 100.0 4.4E-86 9.5E-91 732.7 59.8 481 111-593 26-508 (657)
4 PRK13410 molecular chaperone D 100.0 1.6E-85 3.5E-90 731.6 61.4 483 111-593 1-483 (668)
5 KOG0102 Molecular chaperones m 100.0 3.6E-86 7.8E-91 672.6 36.7 481 111-593 26-508 (640)
6 PRK13411 molecular chaperone D 100.0 1.8E-83 4E-88 717.1 61.7 480 112-593 2-483 (653)
7 PTZ00400 DnaK-type molecular c 100.0 1.9E-83 4E-88 717.3 59.6 481 111-593 40-522 (663)
8 PRK00290 dnaK molecular chaper 100.0 1.8E-82 3.8E-87 709.9 63.0 480 112-593 2-481 (627)
9 CHL00094 dnaK heat shock prote 100.0 3.5E-82 7.7E-87 705.4 62.0 482 112-593 2-483 (621)
10 TIGR02350 prok_dnaK chaperone 100.0 2.3E-81 5E-86 698.8 61.1 478 113-593 1-479 (595)
11 TIGR01991 HscA Fe-S protein as 100.0 1.5E-80 3.2E-85 688.1 61.4 467 114-593 1-469 (599)
12 PRK05183 hscA chaperone protei 100.0 6.4E-80 1.4E-84 684.3 59.4 466 111-593 18-485 (616)
13 PTZ00009 heat shock 70 kDa pro 100.0 1.1E-79 2.3E-84 687.6 59.4 479 110-593 2-492 (653)
14 PRK01433 hscA chaperone protei 100.0 4.2E-76 9E-81 648.1 54.8 444 111-593 18-463 (595)
15 KOG0101 Molecular chaperones H 100.0 2E-77 4.4E-82 634.3 40.8 480 109-593 4-494 (620)
16 COG0443 DnaK Molecular chapero 100.0 3.4E-76 7.3E-81 645.1 45.7 459 111-593 4-464 (579)
17 PF00012 HSP70: Hsp70 protein; 100.0 2.5E-75 5.5E-80 655.5 53.5 476 114-593 1-485 (602)
18 KOG0103 Molecular chaperones H 100.0 2.1E-61 4.5E-66 506.1 41.0 471 113-592 2-492 (727)
19 KOG0104 Molecular chaperones G 100.0 8E-55 1.7E-59 457.0 37.2 468 111-592 21-528 (902)
20 PRK11678 putative chaperone; P 100.0 7.7E-52 1.7E-56 440.9 39.5 338 114-487 2-448 (450)
21 PRK13928 rod shape-determining 100.0 1.9E-38 4.2E-43 330.2 35.4 310 115-487 6-324 (336)
22 PRK13929 rod-share determining 100.0 5.6E-38 1.2E-42 325.8 35.5 308 114-484 6-324 (335)
23 TIGR00904 mreB cell shape dete 100.0 4.2E-36 9.1E-41 312.4 35.6 309 115-486 5-327 (333)
24 PRK13927 rod shape-determining 100.0 3.6E-36 7.7E-41 313.4 34.6 310 113-486 6-324 (334)
25 PRK13930 rod shape-determining 100.0 3.4E-35 7.4E-40 306.3 34.7 311 113-486 9-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 4.6E-35 1E-39 297.3 22.7 312 113-485 2-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 2.9E-31 6.4E-36 258.8 28.4 315 113-488 7-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.3E-29 2.8E-34 249.7 24.0 205 218-482 34-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 7E-27 1.5E-31 234.4 30.6 203 222-484 65-267 (267)
30 TIGR01174 ftsA cell division p 99.9 5.6E-23 1.2E-27 217.0 25.9 195 258-483 157-371 (371)
31 PRK09472 ftsA cell division pr 99.9 5.4E-23 1.2E-27 219.7 22.6 197 260-486 167-388 (420)
32 COG0849 ftsA Cell division ATP 99.9 2.4E-20 5.2E-25 194.4 21.7 205 249-487 159-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.8 1.2E-19 2.6E-24 191.9 20.2 309 114-486 1-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.8 1.3E-18 2.8E-23 184.3 19.7 306 113-486 2-347 (373)
35 PTZ00280 Actin-related protein 99.8 5.3E-17 1.1E-21 173.8 24.2 292 112-463 4-337 (414)
36 PTZ00452 actin; Provisional 99.7 7.9E-17 1.7E-21 169.7 20.9 308 111-486 4-349 (375)
37 PTZ00004 actin-2; Provisional 99.7 2.7E-16 5.8E-21 166.3 20.5 302 111-486 5-352 (378)
38 PTZ00281 actin; Provisional 99.7 9.4E-17 2E-21 169.5 15.2 306 113-486 7-350 (376)
39 COG4820 EutJ Ethanolamine util 99.7 2.3E-17 4.9E-22 149.9 7.0 196 228-483 76-271 (277)
40 PTZ00466 actin-like protein; P 99.7 4E-16 8.6E-21 164.5 16.5 308 113-486 13-354 (380)
41 PF00022 Actin: Actin; InterP 99.7 5.6E-16 1.2E-20 165.4 17.5 312 112-487 4-368 (393)
42 PRK13917 plasmid segregation p 99.6 4.5E-14 9.7E-19 146.9 25.3 205 248-490 115-340 (344)
43 TIGR01175 pilM type IV pilus a 99.5 1.3E-12 2.9E-17 137.0 24.2 179 257-484 141-347 (348)
44 TIGR03739 PRTRC_D PRTRC system 99.5 4E-12 8.7E-17 131.4 20.6 204 244-484 101-318 (320)
45 KOG0679 Actin-related protein 99.5 6.4E-12 1.4E-16 125.4 20.5 183 112-348 11-202 (426)
46 COG5277 Actin and related prot 99.4 5E-12 1.1E-16 134.3 18.7 317 115-485 9-417 (444)
47 PF11104 PilM_2: Type IV pilus 99.4 1.1E-12 2.4E-17 136.9 13.4 178 258-484 135-339 (340)
48 PF06406 StbA: StbA protein; 99.3 8.6E-12 1.9E-16 128.7 13.7 173 274-481 141-316 (318)
49 KOG0676 Actin and related prot 99.2 1.2E-10 2.5E-15 119.6 12.7 303 111-486 6-346 (372)
50 COG4972 PilM Tfp pilus assembl 99.2 2.1E-09 4.5E-14 106.3 19.9 160 258-466 148-315 (354)
51 KOG0677 Actin-related protein 99.0 2.8E-09 6E-14 101.2 10.9 307 112-489 4-364 (389)
52 TIGR00241 CoA_E_activ CoA-subs 99.0 4.6E-08 1E-12 97.5 20.4 168 278-483 74-248 (248)
53 PRK10719 eutA reactivating fac 98.9 2.3E-08 5E-13 104.8 14.1 82 247-339 90-183 (475)
54 KOG0797 Actin-related protein 98.7 8.1E-08 1.7E-12 99.4 12.4 121 219-347 196-322 (618)
55 COG1924 Activator of 2-hydroxy 98.7 2.4E-06 5.3E-11 86.5 20.6 74 410-487 317-391 (396)
56 TIGR03192 benz_CoA_bzdQ benzoy 98.7 1.2E-05 2.6E-10 80.5 24.8 71 412-486 217-288 (293)
57 TIGR03286 methan_mark_15 putat 98.7 3.2E-06 7E-11 87.8 21.3 71 411-485 331-402 (404)
58 PF07520 SrfB: Virulence facto 98.6 5.9E-06 1.3E-10 93.6 23.8 328 160-493 332-841 (1002)
59 TIGR02259 benz_CoA_red_A benzo 98.4 3.6E-06 7.8E-11 86.4 12.5 71 411-484 357-432 (432)
60 KOG0680 Actin-related protein 98.4 8.7E-06 1.9E-10 80.2 14.2 321 112-483 3-370 (400)
61 PF08841 DDR: Diol dehydratase 98.3 1.5E-05 3.3E-10 77.4 14.6 195 266-483 103-328 (332)
62 PRK13317 pantothenate kinase; 98.3 0.00016 3.5E-09 72.8 21.7 48 438-485 222-273 (277)
63 TIGR02261 benz_CoA_red_D benzo 98.2 0.00028 6.2E-09 69.7 21.0 71 411-484 187-262 (262)
64 COG4457 SrfB Uncharacterized p 97.9 0.0035 7.6E-08 67.7 23.2 90 402-493 744-853 (1014)
65 PF06277 EutA: Ethanolamine ut 97.6 0.00081 1.8E-08 71.1 12.6 86 247-337 87-178 (473)
66 TIGR00555 panK_eukar pantothen 97.4 0.025 5.4E-07 56.8 19.7 46 437-482 229-278 (279)
67 KOG0681 Actin-related protein 97.3 0.0017 3.7E-08 68.6 11.2 188 111-348 22-216 (645)
68 PF01869 BcrAD_BadFG: BadF/Bad 97.3 0.24 5.2E-06 49.9 26.6 71 411-484 196-271 (271)
69 KOG0678 Actin-related protein 97.1 0.0025 5.5E-08 63.4 8.7 196 115-347 7-209 (415)
70 PF02782 FGGY_C: FGGY family o 96.9 0.0012 2.6E-08 63.2 5.2 76 410-486 120-196 (198)
71 PRK11031 guanosine pentaphosph 96.7 0.08 1.7E-06 58.2 18.3 78 259-341 92-171 (496)
72 PRK15027 xylulokinase; Provisi 96.4 0.0082 1.8E-07 66.0 7.7 80 411-490 359-438 (484)
73 PF13941 MutL: MutL protein 96.2 0.015 3.3E-07 62.2 8.3 43 114-163 2-46 (457)
74 TIGR01315 5C_CHO_kinase FGGY-f 96.2 0.015 3.3E-07 64.8 8.6 83 406-489 411-493 (541)
75 PF14574 DUF4445: Domain of un 96.2 0.27 5.8E-06 52.3 17.2 58 401-459 291-348 (412)
76 COG4819 EutA Ethanolamine util 96.1 0.063 1.4E-06 53.8 11.3 84 248-336 90-179 (473)
77 PLN02669 xylulokinase 96.0 0.022 4.8E-07 63.5 8.5 72 413-486 421-492 (556)
78 COG1069 AraB Ribulose kinase [ 95.9 0.15 3.1E-06 55.0 13.5 86 407-493 400-485 (544)
79 PF14450 FtsA: Cell division p 95.9 0.015 3.2E-07 50.9 5.3 50 299-348 1-55 (120)
80 PTZ00294 glycerol kinase-like 95.7 0.029 6.4E-07 62.0 8.1 78 412-490 379-457 (504)
81 PRK00047 glpK glycerol kinase; 95.7 0.031 6.7E-07 61.7 8.2 79 411-490 375-454 (498)
82 TIGR01311 glycerol_kin glycero 95.6 0.028 6E-07 62.0 7.6 79 411-490 371-450 (493)
83 TIGR01312 XylB D-xylulose kina 95.6 0.034 7.3E-07 61.1 8.2 79 411-490 362-441 (481)
84 TIGR01234 L-ribulokinase L-rib 95.6 0.031 6.8E-07 62.2 7.9 78 412-490 409-487 (536)
85 PRK04123 ribulokinase; Provisi 95.5 0.033 7.1E-07 62.3 7.7 77 412-489 412-489 (548)
86 PRK10854 exopolyphosphatase; P 95.5 0.14 3E-06 56.6 12.5 78 259-341 97-176 (513)
87 TIGR02628 fuculo_kin_coli L-fu 95.4 0.037 8E-07 60.5 7.6 78 411-489 365-443 (465)
88 PRK10331 L-fuculokinase; Provi 95.4 0.04 8.6E-07 60.3 7.8 78 411-489 361-439 (470)
89 KOG0681 Actin-related protein 95.3 0.015 3.2E-07 61.8 3.5 66 421-486 539-614 (645)
90 TIGR02627 rhamnulo_kin rhamnul 95.2 0.048 1E-06 59.4 7.7 53 438-492 387-439 (454)
91 TIGR01314 gntK_FGGY gluconate 95.2 0.046 9.9E-07 60.4 7.5 52 438-490 401-452 (505)
92 KOG2517 Ribulose kinase and re 95.2 0.068 1.5E-06 57.7 8.4 79 411-490 386-465 (516)
93 PLN02295 glycerol kinase 94.9 0.068 1.5E-06 59.2 7.9 79 410-489 378-462 (512)
94 TIGR03706 exo_poly_only exopol 94.9 0.24 5.2E-06 50.8 11.3 76 260-341 87-164 (300)
95 PRK10939 autoinducer-2 (AI-2) 94.8 0.072 1.6E-06 59.1 7.6 78 411-489 381-459 (520)
96 PRK10640 rhaB rhamnulokinase; 94.7 0.096 2.1E-06 57.3 8.0 76 413-490 349-425 (471)
97 PF01968 Hydantoinase_A: Hydan 94.1 0.16 3.4E-06 51.8 7.6 69 412-483 215-284 (290)
98 smart00842 FtsA Cell division 94.0 0.13 2.9E-06 48.7 6.5 31 258-288 156-186 (187)
99 PRK09604 UGMP family protein; 93.5 2.5 5.4E-05 44.0 15.5 64 421-489 242-311 (332)
100 PRK13321 pantothenate kinase; 93.3 4.3 9.4E-05 40.5 16.3 19 114-132 2-20 (256)
101 KOG2531 Sugar (pentulose and h 93.2 0.27 5.9E-06 51.6 7.4 55 431-486 435-489 (545)
102 COG1070 XylB Sugar (pentulose 92.4 0.39 8.4E-06 53.0 8.0 50 437-486 400-449 (502)
103 PF14450 FtsA: Cell division p 92.3 0.037 8.1E-07 48.4 -0.2 61 224-288 46-119 (120)
104 PF02541 Ppx-GppA: Ppx/GppA ph 92.1 0.34 7.5E-06 49.2 6.6 76 261-341 74-151 (285)
105 COG3426 Butyrate kinase [Energ 92.0 2.7 5.8E-05 41.8 12.0 48 436-483 294-345 (358)
106 PRK09557 fructokinase; Reviewe 91.6 18 0.00038 36.9 20.3 42 271-314 96-139 (301)
107 COG1521 Pantothenate kinase ty 91.3 8.6 0.00019 38.1 15.1 50 407-458 181-230 (251)
108 PRK13318 pantothenate kinase; 91.0 11 0.00023 37.7 16.0 19 114-132 2-20 (258)
109 PF07318 DUF1464: Protein of u 91.0 1.7 3.6E-05 44.8 10.0 70 415-489 241-318 (343)
110 COG1548 Predicted transcriptio 90.8 3 6.4E-05 40.9 10.9 74 230-317 76-150 (330)
111 COG0248 GppA Exopolyphosphatas 90.8 2.2 4.8E-05 46.6 11.4 93 224-317 52-149 (492)
112 PF02543 CmcH_NodU: Carbamoylt 90.0 6 0.00013 41.6 13.5 82 403-489 131-216 (360)
113 PLN02666 5-oxoprolinase 89.9 7.5 0.00016 47.5 15.8 75 405-482 454-530 (1275)
114 PRK00292 glk glucokinase; Prov 89.9 26 0.00056 36.0 18.4 47 267-314 86-144 (316)
115 TIGR03281 methan_mark_12 putat 89.1 2 4.2E-05 43.3 8.4 58 439-498 263-323 (326)
116 TIGR03723 bact_gcp putative gl 88.6 25 0.00053 36.3 16.7 56 421-481 247-308 (314)
117 PRK14878 UGMP family protein; 85.9 27 0.00058 36.1 15.2 32 438-469 241-275 (323)
118 PRK00976 hypothetical protein; 85.6 5.6 0.00012 40.8 9.7 59 438-498 263-323 (326)
119 PF03702 UPF0075: Uncharacteri 85.2 2.7 5.8E-05 44.1 7.4 70 412-486 261-337 (364)
120 PRK09605 bifunctional UGMP fam 85.1 49 0.0011 36.9 17.9 51 438-488 245-301 (535)
121 TIGR00329 gcp_kae1 metallohydr 84.9 31 0.00068 35.3 15.1 38 420-462 245-282 (305)
122 COG2971 Predicted N-acetylgluc 83.6 54 0.0012 33.3 19.5 184 275-487 99-292 (301)
123 COG0554 GlpK Glycerol kinase [ 83.1 3.9 8.5E-05 43.7 7.5 78 411-489 374-452 (499)
124 PRK14101 bifunctional glucokin 82.7 23 0.00049 40.5 14.3 23 108-130 14-36 (638)
125 PTZ00340 O-sialoglycoprotein e 82.1 69 0.0015 33.4 17.8 113 221-339 41-163 (345)
126 PRK03011 butyrate kinase; Prov 81.6 5.6 0.00012 41.8 8.1 46 438-483 295-344 (358)
127 TIGR03722 arch_KAE1 universal 81.3 70 0.0015 33.0 17.1 41 439-479 243-289 (322)
128 COG2192 Predicted carbamoyl tr 80.6 97 0.0021 34.1 21.4 212 271-489 110-338 (555)
129 COG5026 Hexokinase [Carbohydra 80.4 50 0.0011 35.2 14.2 33 258-290 181-215 (466)
130 TIGR00744 ROK_glcA_fam ROK fam 80.1 74 0.0016 32.5 18.8 93 221-315 32-141 (318)
131 PF08735 DUF1786: Putative pyr 76.7 25 0.00055 34.7 10.3 95 242-341 111-209 (254)
132 COG0533 QRI7 Metal-dependent p 74.0 1.2E+02 0.0025 31.6 18.6 222 219-463 40-286 (342)
133 PF00370 FGGY_N: FGGY family o 74.0 3.6 7.9E-05 40.6 3.9 19 113-131 1-19 (245)
134 PRK09585 anmK anhydro-N-acetyl 73.5 17 0.00037 38.2 8.8 63 421-486 272-338 (365)
135 TIGR00143 hypF [NiFe] hydrogen 73.0 11 0.00023 43.4 7.8 48 438-485 658-711 (711)
136 PF03652 UPF0081: Uncharacteri 72.4 4.2 9.1E-05 36.3 3.5 21 112-132 1-21 (135)
137 KOG1385 Nucleoside phosphatase 72.3 7.5 0.00016 40.8 5.7 156 110-315 65-231 (453)
138 COG0145 HyuA N-methylhydantoin 71.5 5 0.00011 45.7 4.6 42 275-317 255-298 (674)
139 PF00349 Hexokinase_1: Hexokin 70.9 16 0.00034 35.2 7.4 34 258-291 168-204 (206)
140 PLN02914 hexokinase 70.3 52 0.0011 36.0 11.9 62 252-315 199-262 (490)
141 PLN02362 hexokinase 70.0 61 0.0013 35.7 12.4 53 257-311 204-258 (509)
142 smart00732 YqgFc Likely ribonu 69.9 4.3 9.3E-05 33.6 2.9 18 113-130 2-19 (99)
143 PLN02405 hexokinase 69.2 65 0.0014 35.4 12.4 56 257-314 204-261 (497)
144 COG1070 XylB Sugar (pentulose 68.3 5.8 0.00013 43.8 4.3 22 111-132 3-24 (502)
145 PLN02920 pantothenate kinase 1 66.2 41 0.00089 35.5 9.6 49 437-485 296-351 (398)
146 PRK00047 glpK glycerol kinase; 64.8 6.5 0.00014 43.4 3.8 20 112-131 5-24 (498)
147 PRK10939 autoinducer-2 (AI-2) 63.8 6.6 0.00014 43.6 3.7 21 111-131 2-22 (520)
148 PTZ00294 glycerol kinase-like 63.7 6.8 0.00015 43.3 3.7 20 112-131 2-21 (504)
149 PTZ00107 hexokinase; Provision 63.2 80 0.0017 34.5 11.6 57 253-309 189-249 (464)
150 PRK00109 Holliday junction res 61.3 8.2 0.00018 34.6 3.1 21 111-131 3-23 (138)
151 COG0816 Predicted endonuclease 60.8 8.7 0.00019 34.5 3.1 21 112-132 2-22 (141)
152 cd06007 R3H_DEXH_helicase R3H 60.3 29 0.00062 26.1 5.4 29 247-275 16-44 (59)
153 COG4012 Uncharacterized protei 60.1 78 0.0017 31.4 9.5 84 262-349 191-277 (342)
154 TIGR03123 one_C_unchar_1 proba 59.3 9.6 0.00021 39.2 3.6 33 282-317 116-148 (318)
155 PF14574 DUF4445: Domain of un 58.9 40 0.00086 36.1 8.2 56 410-465 55-110 (412)
156 PTZ00288 glucokinase 1; Provis 58.4 85 0.0018 33.6 10.6 21 111-131 25-45 (405)
157 PRK10331 L-fuculokinase; Provi 58.2 9 0.0002 41.9 3.4 19 113-131 3-21 (470)
158 PLN02596 hexokinase-like 57.5 1.5E+02 0.0033 32.5 12.6 58 257-316 204-263 (490)
159 TIGR02628 fuculo_kin_coli L-fu 57.5 10 0.00022 41.5 3.6 19 113-131 2-20 (465)
160 KOG2708 Predicted metalloprote 55.9 1.2E+02 0.0025 29.5 9.8 72 405-482 225-300 (336)
161 PRK04123 ribulokinase; Provisi 55.5 12 0.00025 42.0 3.8 19 112-130 3-21 (548)
162 cd00529 RuvC_resolvase Hollida 54.5 16 0.00035 33.2 4.0 18 113-130 1-18 (154)
163 KOG1369 Hexokinase [Carbohydra 54.3 1.6E+02 0.0034 32.1 11.8 65 251-317 184-251 (474)
164 TIGR02707 butyr_kinase butyrat 53.3 43 0.00094 35.1 7.3 68 412-482 270-341 (351)
165 COG2377 Predicted molecular ch 52.3 1.9E+02 0.0041 30.3 11.4 51 436-486 288-343 (371)
166 PRK15027 xylulokinase; Provisi 52.1 12 0.00026 41.1 3.2 19 113-131 1-19 (484)
167 TIGR01234 L-ribulokinase L-rib 50.7 15 0.00033 40.9 3.7 18 113-130 2-19 (536)
168 PF02685 Glucokinase: Glucokin 50.5 1.2E+02 0.0026 31.3 10.0 120 221-350 37-182 (316)
169 cd02640 R3H_NRF R3H domain of 50.3 57 0.0012 24.6 5.6 38 237-275 8-45 (60)
170 PRK13331 pantothenate kinase; 49.9 21 0.00046 35.4 4.1 27 107-133 2-28 (251)
171 TIGR01311 glycerol_kin glycero 49.5 16 0.00034 40.3 3.5 19 113-131 2-20 (493)
172 TIGR01314 gntK_FGGY gluconate 49.5 14 0.00031 40.8 3.3 19 113-131 1-19 (505)
173 PLN02295 glycerol kinase 49.0 15 0.00032 40.7 3.3 18 113-130 1-18 (512)
174 PF03630 Fumble: Fumble ; Int 48.7 2.2E+02 0.0049 29.6 11.6 47 437-483 286-339 (341)
175 cd02641 R3H_Smubp-2_like R3H d 48.6 55 0.0012 24.6 5.3 40 235-275 6-45 (60)
176 COG2441 Predicted butyrate kin 48.3 66 0.0014 32.1 7.1 53 437-489 272-335 (374)
177 TIGR01315 5C_CHO_kinase FGGY-f 47.4 17 0.00036 40.7 3.4 18 114-131 2-19 (541)
178 PRK05082 N-acetylmannosamine k 46.6 64 0.0014 32.5 7.3 69 412-485 212-287 (291)
179 COG1940 NagC Transcriptional r 45.6 3.4E+02 0.0074 27.5 22.3 21 111-131 5-25 (314)
180 PRK13310 N-acetyl-D-glucosamin 43.4 92 0.002 31.6 7.9 45 269-315 94-140 (303)
181 PLN02377 3-ketoacyl-CoA syntha 42.8 1E+02 0.0022 34.0 8.4 57 409-465 164-221 (502)
182 PRK13310 N-acetyl-D-glucosamin 41.9 3.1E+02 0.0067 27.7 11.6 47 438-484 245-300 (303)
183 KOG1794 N-Acetylglucosamine ki 41.5 75 0.0016 32.1 6.4 77 413-489 236-319 (336)
184 PLN02669 xylulokinase 40.6 28 0.00061 39.0 3.8 21 111-131 7-27 (556)
185 KOG2707 Predicted metalloprote 40.3 4.5E+02 0.0098 27.4 20.8 229 222-463 78-330 (405)
186 TIGR01319 glmL_fam conserved h 40.0 72 0.0016 34.5 6.5 58 258-315 193-267 (463)
187 cd02646 R3H_G-patch R3H domain 38.3 82 0.0018 23.4 4.8 40 233-275 4-43 (58)
188 PRK00039 ruvC Holliday junctio 38.1 27 0.00059 32.2 2.7 19 112-130 2-20 (164)
189 TIGR00250 RNAse_H_YqgF RNAse H 36.4 23 0.00049 31.4 1.8 17 115-131 1-17 (130)
190 PRK11199 tyrA bifunctional cho 36.3 2.7E+02 0.0058 29.4 10.3 52 405-460 66-120 (374)
191 COG0837 Glk Glucokinase [Carbo 35.8 5E+02 0.011 26.6 14.9 119 221-351 43-187 (320)
192 PF02075 RuvC: Crossover junct 35.5 60 0.0013 29.4 4.5 24 114-137 1-26 (149)
193 PRK13320 pantothenate kinase; 35.4 43 0.00092 33.1 3.8 22 112-133 2-23 (244)
194 PRK00180 acetate kinase A/prop 35.3 1.1E+02 0.0024 32.7 7.0 48 413-463 301-349 (402)
195 COG4012 Uncharacterized protei 35.2 76 0.0017 31.5 5.2 49 298-347 2-73 (342)
196 KOG2517 Ribulose kinase and re 35.2 39 0.00084 37.1 3.6 20 111-130 5-24 (516)
197 PF12401 DUF3662: Protein of u 34.8 1.8E+02 0.0039 25.1 7.1 93 339-444 6-101 (116)
198 COG0848 ExbD Biopolymer transp 34.0 2.9E+02 0.0064 24.6 8.5 77 197-284 60-136 (137)
199 cd02639 R3H_RRM R3H domain of 33.5 90 0.0019 23.5 4.3 29 247-275 17-45 (60)
200 PLN03170 chalcone synthase; Pr 33.0 1.2E+02 0.0027 32.3 7.1 59 409-467 97-157 (401)
201 PRK13326 pantothenate kinase; 32.8 47 0.001 33.3 3.6 23 111-133 5-27 (262)
202 PLN03173 chalcone synthase; Pr 32.7 1.5E+02 0.0032 31.6 7.6 60 408-467 92-153 (391)
203 PLN03172 chalcone synthase fam 32.6 1.3E+02 0.0028 32.1 7.1 53 415-467 100-153 (393)
204 TIGR00067 glut_race glutamate 29.3 1.3E+02 0.0028 29.9 6.1 41 438-481 172-212 (251)
205 PRK09698 D-allose kinase; Prov 29.2 1.5E+02 0.0032 30.1 6.7 42 271-314 104-146 (302)
206 PRK00865 glutamate racemase; P 28.3 1.7E+02 0.0037 29.1 6.8 43 438-483 177-219 (261)
207 COG5026 Hexokinase [Carbohydra 27.6 3.3E+02 0.0071 29.3 8.7 28 294-321 72-100 (466)
208 TIGR00016 ackA acetate kinase. 27.6 1.8E+02 0.004 31.0 7.0 47 413-462 305-352 (404)
209 COG3894 Uncharacterized metal- 27.3 2.9E+02 0.0063 30.3 8.3 46 297-342 164-210 (614)
210 PF00349 Hexokinase_1: Hexokin 27.1 74 0.0016 30.6 3.8 29 295-323 61-90 (206)
211 PLN03168 chalcone synthase; Pr 26.5 1.8E+02 0.0038 31.0 6.9 60 408-467 91-152 (389)
212 PLN02854 3-ketoacyl-CoA syntha 26.3 1.5E+02 0.0033 32.8 6.4 55 411-465 182-237 (521)
213 PF07066 DUF3882: Lactococcus 23.5 97 0.0021 27.8 3.4 23 111-133 1-28 (159)
214 PF03309 Pan_kinase: Type III 23.4 87 0.0019 29.9 3.6 20 114-133 1-20 (206)
215 PF00815 Histidinol_dh: Histid 23.0 3.8E+02 0.0083 28.7 8.4 75 209-292 110-185 (412)
216 PRK13321 pantothenate kinase; 22.8 3.3E+02 0.0072 26.9 7.7 47 299-346 2-48 (256)
217 PRK15080 ethanolamine utilizat 22.5 2.3E+02 0.0049 28.3 6.5 55 284-338 11-65 (267)
218 PRK07058 acetate kinase; Provi 22.4 2.3E+02 0.005 30.1 6.6 48 412-463 296-344 (396)
219 PRK13324 pantothenate kinase; 22.1 90 0.002 31.2 3.4 20 114-133 2-21 (258)
220 TIGR02627 rhamnulo_kin rhamnul 22.1 45 0.00097 36.3 1.4 17 115-131 1-17 (454)
221 PF04848 Pox_A22: Poxvirus A22 22.0 1.1E+02 0.0024 27.6 3.6 20 112-131 1-20 (143)
222 PF08392 FAE1_CUT1_RppA: FAE1/ 22.0 2.2E+02 0.0049 28.8 6.2 46 420-465 86-132 (290)
223 cd04036 C2_cPLA2 C2 domain pre 21.7 4.5E+02 0.0097 22.1 7.5 60 528-592 53-114 (119)
224 TIGR00671 baf pantothenate kin 21.7 88 0.0019 30.9 3.2 19 115-133 2-20 (243)
225 TIGR01865 cas_Csn1 CRISPR-asso 20.9 76 0.0017 37.3 3.0 20 113-132 2-21 (805)
226 PLN02902 pantothenate kinase 20.6 4.7E+02 0.01 30.9 9.0 50 437-486 345-401 (876)
227 PRK12408 glucokinase; Provisio 20.5 71 0.0015 33.2 2.4 21 111-131 15-35 (336)
228 TIGR01312 XylB D-xylulose kina 20.2 64 0.0014 35.2 2.2 17 115-131 1-17 (481)
229 COG1940 NagC Transcriptional r 20.1 3.8E+02 0.0082 27.2 7.8 55 296-350 5-59 (314)
230 cd06480 ACD_HspB8_like Alpha-c 20.0 1.1E+02 0.0023 25.3 2.9 23 571-593 67-89 (91)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-100 Score=750.18 Aligned_cols=479 Identities=55% Similarity=0.878 Sum_probs=459.4
Q ss_pred cCCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc
Q 047555 109 VVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS 188 (593)
Q Consensus 109 ~~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~ 188 (593)
.+.+.|||||+||||++|+++.+|+++|+.|.+|+|.+||+|+|.++ ++++|+.|+.+...||++++++.||++|+.++
T Consensus 33 ~~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~ 111 (663)
T KOG0100|consen 33 EKLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFN 111 (663)
T ss_pred hccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccC
Confidence 35799999999999999999999999999999999999999999988 99999999999999999999999999999998
Q ss_pred --hhhhhhccCceEEEECCCCcEEEEeCCC---CeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 189 --EVDDESKQVSYRVVRDENGNVKLDCPAI---GKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 189 --~~~~~~~~~~~~v~~~~~g~~~i~~~~~---~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
.++++.+.|||+++. .+++..+++... .+.|+|+++.+|+|.++++.++.+++..+.+.|+||||||++.||++
T Consensus 112 d~~vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQA 190 (663)
T KOG0100|consen 112 DKSVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQA 190 (663)
T ss_pred ChhhhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhh
Confidence 789999999999985 556666665443 56799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceEEEechhHHHHHHhccccCC-CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDAGRIAGLEVLRIINEPTAASLAYGFERKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~-~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
+++|...||++++++|+||+|||++|+++.+. ..++||||+||||||+|++.+.+++|+++++.|+.++||.+||++++
T Consensus 191 TKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 191 TKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred hcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 99999999999999999999999999999765 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHH
Q 047555 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLK 422 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~ 422 (593)
+|+...|+++.+.+++++.+++.+|+++||+||+.||+..+..++++++.... +++-++||..||++--+++++..
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~----DfSEtLtRAkFEElNmDLFr~Tl 346 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGV----DFSETLTRAKFEELNMDLFRKTL 346 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccc----cccchhhhhHHHHhhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999876543 58899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh-CCCCCCCCCChhHHHhHHHHHhhhhcCC--CCceEEEec
Q 047555 423 KPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT-GKDPNVTVNPDEVVALGAAVQGGVLAGD--VSDIVLLDV 499 (593)
Q Consensus 423 ~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~-g~~v~~~~~p~~aVA~GAal~a~~l~~~--~~~~~~~~~ 499 (593)
++++++|+++++...+|+.|+||||++|+|.+|++|+++| |.++....||++|||+|||.+|..++|. ..+++++|+
T Consensus 347 kPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv 426 (663)
T KOG0100|consen 347 KPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDV 426 (663)
T ss_pred HHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEee
Confidence 9999999999999999999999999999999999999999 8899999999999999999999999994 568999999
Q ss_pred ccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEE
Q 047555 500 TPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEV 579 (593)
Q Consensus 500 ~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v 579 (593)
+|+++|||+.+|.|..|||||+.+|+++++.|++..|+|+.+.|++|+||+.+..+|.+||.|.++||||+|+|.++|+|
T Consensus 427 ~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEV 506 (663)
T KOG0100|consen 427 NPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEV 506 (663)
T ss_pred ccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceEEEEc
Q 047555 580 KFDIDANGILSVTA 593 (593)
Q Consensus 580 ~f~~d~~g~l~v~a 593 (593)
+|++|.||+|+|+|
T Consensus 507 tFevDangiL~VsA 520 (663)
T KOG0100|consen 507 TFEVDANGILQVSA 520 (663)
T ss_pred EEEEccCceEEEEe
Confidence 99999999999987
No 2
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=6.3e-86 Score=737.38 Aligned_cols=514 Identities=91% Similarity=1.289 Sum_probs=481.4
Q ss_pred CCCCCCchhhhhcccccc-ccccccCCCCcccCCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCc
Q 047555 79 PHFGLPNAAFLKLNNEKN-NTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGD 157 (593)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~ 157 (593)
.+|.+|+++...+....| .+|+++ ++|+++.++.+||||||||||+||++.+|.+.++.|..|++.+||+|+|.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~ 84 (673)
T PLN03184 6 APFSTPTAAFLKMGKRRGNGARRRA-GGPLRVVAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 84 (673)
T ss_pred cCCCCCCcchhhhhhhhcccccccc-CCCccccCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCC
Confidence 346678887776644443 444443 789999899999999999999999999999999999999999999999987778
Q ss_pred EEecHHHHHhhhhCCCchhhhhhhhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHH
Q 047555 158 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDA 237 (593)
Q Consensus 158 ~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a 237 (593)
+++|..|+.+...+|.++++++||++|+++.+++.+.+.++|.++.++++.+.+.++..++.++++++.+++|++|++.+
T Consensus 85 ~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~a 164 (673)
T PLN03184 85 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDA 164 (673)
T ss_pred EEECHHHHHhhhhCchhhhHHHHHhhCCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887777888899999999999998888777889999999999999999999
Q ss_pred HHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEc
Q 047555 238 SKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVG 317 (593)
Q Consensus 238 ~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~ 317 (593)
+.+++..+.++|||||++|++.||+++++|++.||++++++++||+|||++|+.+...+..+||||+||||+|+|++++.
T Consensus 165 e~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~ 244 (673)
T PLN03184 165 SKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVG 244 (673)
T ss_pred HHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999887778899999999999999999999
Q ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCC
Q 047555 318 DGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADG 397 (593)
Q Consensus 318 ~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~ 397 (593)
++.++++++.++.++||.+||+.|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||....+.+.++.+....++
T Consensus 245 ~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g 324 (673)
T PLN03184 245 DGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADG 324 (673)
T ss_pred CCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCC
Confidence 99999999999999999999999999999999998888888899999999999999999999999888888866555555
Q ss_pred CceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHH
Q 047555 398 PKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVA 477 (593)
Q Consensus 398 ~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA 477 (593)
..++++.|||++|+++++++++++.++|+++|+++++...+|+.|+||||+|++|.|+++|+++||.++....||++|||
T Consensus 325 ~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA 404 (673)
T PLN03184 325 PKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVA 404 (673)
T ss_pred CceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred hHHHHHhhhhcCCCCceEEEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCc
Q 047555 478 LGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNK 557 (593)
Q Consensus 478 ~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~ 557 (593)
.|||++|+.+++..+++.+.|++|++||+++.++.+.+|||+|+++|++++++|.+..|+|+.+.|.||||++.+..+|.
T Consensus 405 ~GAAi~aa~ls~~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~ 484 (673)
T PLN03184 405 LGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNK 484 (673)
T ss_pred HHHHHHHHHhccCccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCc
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEEEc
Q 047555 558 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593 (593)
Q Consensus 558 ~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v~a 593 (593)
.||+|.|+++|+.++|.++|+|+|++|.||+|+|+|
T Consensus 485 ~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a 520 (673)
T PLN03184 485 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSA 520 (673)
T ss_pred eEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEE
Confidence 999999999999999988999999999999999985
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=4.4e-86 Score=732.75 Aligned_cols=481 Identities=56% Similarity=0.914 Sum_probs=455.7
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS-- 188 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~-- 188 (593)
++.+||||||||||+||++.++.++++.|..|.+.+||+|+|.++ ++++|..|+.+...+|.++++++||++|+.+.
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 357999999999999999999999999999999999999999854 78999999999999999999999999999876
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
.++.+.+.|||.++.+.++...+... .++.++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 105 ~v~~~~~~~p~~vv~~~~~~~~i~~~-~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDG-NGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHHhhccCcEEEEEcCCCceEEEeC-CCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 57778889999999888888777643 36789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.||++++++++||+|||++|+.+...+..++|||+||||||+|++++.++.++++++.|+..+||.+||++|.+|+.++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEE 263 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHH
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
|+.+++.++..++..+.+|+.+||++|+.||....+.+.++.+..+.++..++.+.|||++|+++++++++++.++++++
T Consensus 264 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~ 343 (657)
T PTZ00186 264 FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQC 343 (657)
T ss_pred HhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888999999999999999999999999999988776555555678899999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
|+++++...+|+.|+||||+|++|.|+++|+++||.++....||++|||+|||++|+.+++..+++.+.|++|++||+++
T Consensus 344 L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~ 423 (657)
T PTZ00186 344 MKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIET 423 (657)
T ss_pred HHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeecccccccee
Confidence 99999999999999999999999999999999999888889999999999999999999998889999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+.+|||||+++|+++++.|++..|+|+.+.|.|||||+.+..+|..||+|.|.|+|+.|+|.++|+|+|++|.||+
T Consensus 424 ~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGi 503 (657)
T PTZ00186 424 LGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGI 503 (657)
T ss_pred cCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
|+|+|
T Consensus 504 L~V~a 508 (657)
T PTZ00186 504 CHVTA 508 (657)
T ss_pred EEEEE
Confidence 99986
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.6e-85 Score=731.55 Aligned_cols=483 Identities=67% Similarity=1.088 Sum_probs=461.2
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
|+.+||||||||||+||++.+|.+.++.|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||++|+++.++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~ 80 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDEL 80 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhh
Confidence 35799999999999999999999999999999999999999987789999999999999999999999999999998877
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
+.+.+.+||.+..+++|.+.+.++..++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++.
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 160 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRI 160 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 77888999999999999999888777889999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
||++++.+++||+|||++|+.+...+..+||||+||||+|++++++.++.++++++.++..+||.+||++|++|+.++|.
T Consensus 161 AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~ 240 (668)
T PRK13410 161 AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240 (668)
T ss_pred cCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999887778899999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALR 430 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 430 (593)
.+.+.++..+++++.+|+.+||++|+.||....+.+.++++..+.+++.++.+.|+|++|+++|+++++++.++|+++|+
T Consensus 241 ~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~ 320 (668)
T PRK13410 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320 (668)
T ss_pred hhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999889988877665566667889999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEeeC
Q 047555 431 DAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLG 510 (593)
Q Consensus 431 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~ 510 (593)
++++...+|+.|+||||+|++|+|++.|++.|+.++....||++|||+|||++|+.+++..+++.+.|++|+++|+++.+
T Consensus 321 ~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~slgie~~~ 400 (668)
T PRK13410 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIG 400 (668)
T ss_pred HcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccccceecC
Confidence 99999999999999999999999999999999988889999999999999999999999888999999999999999999
Q ss_pred CEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEE
Q 047555 511 GVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILS 590 (593)
Q Consensus 511 ~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~ 590 (593)
+.+.+|||+|+++|++++.+|++..|+|+.+.|.||||++....+|+.||+|.|+++|+.++|.++|+|+|++|.||+|+
T Consensus 401 g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~ 480 (668)
T PRK13410 401 GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQ 480 (668)
T ss_pred CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 047555 591 VTA 593 (593)
Q Consensus 591 v~a 593 (593)
|+|
T Consensus 481 V~a 483 (668)
T PRK13410 481 VSA 483 (668)
T ss_pred EEE
Confidence 985
No 5
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-86 Score=672.61 Aligned_cols=481 Identities=65% Similarity=1.007 Sum_probs=473.3
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS-- 188 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~-- 188 (593)
.+.++|||+|||+|+++++.++.+.++.|.+|.+.+|++|+|..++++++|..|+++...||+++++.-||++||.++
T Consensus 26 ~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ 105 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDP 105 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
+++.+.+.+||+++...+|..++++ .|+.++|.++.+++|.+++++++.+++..+.+.|+|||+||++.||+++++|.
T Consensus 106 evq~~~k~vpyKiVk~~ngdaw~e~--~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 106 EVQKDIKQVPYKIVKASNGDAWVEA--RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHHHhCCcceEEccCCcEEEEe--CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 8899999999999999999999998 69999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.+|++++++++||+|||++|+++.+.+..++|+|+||||+|++++.+.++.+++.++.++.++||++||..+.+|+..+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
|+...++++.++..++.+|++++|++|.+||...+.++++|++..+..|++++++.+||.+|++++.+++++.++.++++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
|+++++...||+.|+|+||.+++|.+++.++++||..+....||+++||.||++++..++|++++++++|++|+++|+++
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgiet 423 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIET 423 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.|..|+++++.||+.++..|+++.|+|+.++|.++|||+++.++|+++|+|.+.||||.|+|.++|+|+|++|.||+
T Consensus 424 lggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI 503 (640)
T KOG0102|consen 424 LGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGI 503 (640)
T ss_pred hhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
.+|+|
T Consensus 504 ~~vsA 508 (640)
T KOG0102|consen 504 GTVSA 508 (640)
T ss_pred eeeeh
Confidence 99987
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.8e-83 Score=717.08 Aligned_cols=480 Identities=65% Similarity=1.025 Sum_probs=452.8
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
+.+||||||||||+||++.+|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||++|+.+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 46999999999999999999999999999999999999999877799999999999999999999999999999988777
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIA 271 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~A 271 (593)
.+.+.+||.++...++.+.+.+. ++.++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|++.|
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~i~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 159 (653)
T PRK13411 82 EERSRVPYTCVKGRDDTVNVQIR--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIA 159 (653)
T ss_pred HHhhcCCceEEecCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHc
Confidence 77789999999888887777665 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEechhHHHHHHhccccC-CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 272 GLEVLRIINEPTAASLAYGFERK-NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~~~~~~-~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
|++++++++||+|||++|+.... .+.++||||+||||+|++++++.++.++++++.++..+||.+||+.|++|+.++|+
T Consensus 160 Gl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~ 239 (653)
T PRK13411 160 GLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQ 239 (653)
T ss_pred CCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987643 46789999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALR 430 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 430 (593)
.+.+.++..++..+.+|+++||++|+.||....+.++++++..+..+..++++.|||++|+++++|+++++.++++++|+
T Consensus 240 ~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 319 (653)
T PRK13411 240 QQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALK 319 (653)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999898988876554445567899999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC-CCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEee
Q 047555 431 DAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG-KDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETL 509 (593)
Q Consensus 431 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g-~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~ 509 (593)
++++...+|+.|+||||+|++|+|++.|++.|+ ..+....||++|||+|||++|+.+++..+++.+.|++|++||++..
T Consensus 320 ~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~ 399 (653)
T PRK13411 320 DAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETL 399 (653)
T ss_pred HcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeEEec
Confidence 999998999999999999999999999999996 5678889999999999999999999888899999999999999999
Q ss_pred CCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceE
Q 047555 510 GGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 589 (593)
Q Consensus 510 ~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l 589 (593)
++.+.+||++|+++|+++++.|++..|+|+.+.|.||||++....+|..||+|.+.++|+.++|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil 479 (653)
T PRK13411 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGIL 479 (653)
T ss_pred CCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred EEEc
Q 047555 590 SVTA 593 (593)
Q Consensus 590 ~v~a 593 (593)
+|+|
T Consensus 480 ~v~a 483 (653)
T PRK13411 480 KVSA 483 (653)
T ss_pred EEEE
Confidence 9986
No 7
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.9e-83 Score=717.31 Aligned_cols=481 Identities=59% Similarity=0.963 Sum_probs=456.0
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS-- 188 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~-- 188 (593)
++.+||||||||||+||++.++.++++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||++|++++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 457999999999999999999999999999999999999999877789999999999999999999999999999886
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
.++.+.+.+||.++.++++.+.+.+. ++.++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++|+
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEAQ--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 46667788999999988888877765 7789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.||++++++++||+|||++|+.....+..+||||+||||+|++++++.++.++++++.|+..+||.+||+.|++|+.++
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE 277 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
|+++++.++..++..+.+|+.+||++|+.||......+.++.+..+.++..++.+.|||++|+++++|+++++.++++++
T Consensus 278 f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~ 357 (663)
T PTZ00400 278 FKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKC 357 (663)
T ss_pred hhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888999999999999999999999988888888776555556678999999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
|+++++...+|+.|+||||+|++|+|+++|++.||.++....||+++||+|||++|+.+++..+++.+.|++|++||++.
T Consensus 358 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~ 437 (663)
T PTZ00400 358 IKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIET 437 (663)
T ss_pred HHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEe
Confidence 99999999999999999999999999999999999888889999999999999999999998889999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+.+||++|+++|.++++.|++..|+|+.+.|.||||++.+..+|..||+|.|.++|+.++|.++|+|+|++|.||+
T Consensus 438 ~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gi 517 (663)
T PTZ00400 438 LGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGI 517 (663)
T ss_pred cCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
|+|+|
T Consensus 518 l~v~a 522 (663)
T PTZ00400 518 MNISA 522 (663)
T ss_pred EEEEE
Confidence 99985
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.8e-82 Score=709.95 Aligned_cols=480 Identities=69% Similarity=1.073 Sum_probs=455.0
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
+.+||||||||||+||++.+|.++++.|..|++.+||+|+|..++++++|+.|+.+...+|.++++++||+||++...++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~ 81 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQ 81 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHH
Confidence 46999999999999999999999999999999999999999877799999999999999999999999999999955777
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIA 271 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~A 271 (593)
.+.+.+||.++.++++...+.+. +..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++.|
T Consensus 82 ~~~~~~p~~~~~~~~~~~~~~~~--~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 159 (627)
T PRK00290 82 KDIKLVPYKIVKADNGDAWVEID--GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIA 159 (627)
T ss_pred HHhhcCCeEEEEcCCCceEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 78889999999988888777664 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhh
Q 047555 272 GLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~ 351 (593)
|++++.+++||+|||++|+.....+..+||||+||||+|+|+++++++.++++++.++..+||.+||++|++|+.++|+.
T Consensus 160 Gl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 239 (627)
T PRK00290 160 GLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239 (627)
T ss_pred CCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988766678999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRD 431 (593)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 431 (593)
+++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+.+++.++.+.|||++|+++++++++++.+.++++|++
T Consensus 240 ~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~ 319 (627)
T PRK00290 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKD 319 (627)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999998888888766554455678899999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEeeCC
Q 047555 432 AKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGG 511 (593)
Q Consensus 432 ~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~~ 511 (593)
+++...+|+.|+||||+|++|+|++.|++.||.++....||++|||.|||++|+.+++..+++.+.|++|++||++..++
T Consensus 320 a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi~~~~~ 399 (627)
T PRK00290 320 AGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGG 399 (627)
T ss_pred cCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEEEecCC
Confidence 99999999999999999999999999999999988899999999999999999999998899999999999999999999
Q ss_pred EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEE
Q 047555 512 VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591 (593)
Q Consensus 512 ~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 591 (593)
.+.+|||+|+++|++++++|++..|+|+.+.|.||||++....+|..||+|.|+++|+.++|.++|+|+|++|.||+|+|
T Consensus 400 ~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v 479 (627)
T PRK00290 400 VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHV 479 (627)
T ss_pred eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred Ec
Q 047555 592 TA 593 (593)
Q Consensus 592 ~a 593 (593)
+|
T Consensus 480 ~a 481 (627)
T PRK00290 480 SA 481 (627)
T ss_pred EE
Confidence 85
No 9
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=3.5e-82 Score=705.35 Aligned_cols=482 Identities=79% Similarity=1.187 Sum_probs=457.9
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
+.+||||||||||+||++.+|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|+++++++||++|+.++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 47999999999999999999999999999999999999999877789999999999999999999999999999988777
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIA 271 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~A 271 (593)
...+.|+|.+..++++.+.+.++..+..++++++.+++|++|++.++.+++..+.++|||||++|++.||+++++|++.|
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 161 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIA 161 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 77788999999988899988887778889999999999999999999999998999999999999999999999999999
Q ss_pred CCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhh
Q 047555 272 GLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~ 351 (593)
|++++++++||+|||++|+.+...+..+||||+||||+|+|+++++++.++++++.++..+||++||+.|++|+.++|+.
T Consensus 162 Gl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 241 (621)
T CHL00094 162 GLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKK 241 (621)
T ss_pred CCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877788999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRD 431 (593)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 431 (593)
+++.++..+++.+.+|+.+||++|+.||......+.++.+..+.++..++...|+|++|+++++++++++.++|+++|++
T Consensus 242 ~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 321 (621)
T CHL00094 242 KEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKD 321 (621)
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888999999999999999999999888888888765444455678899999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEeeCC
Q 047555 432 AKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGG 511 (593)
Q Consensus 432 ~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~~ 511 (593)
+++...+|+.|+|+||+|++|.|++.|++.||.++....||++|||.|||++|+.+++..+++.+.|++|++||++..++
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lgi~~~~~ 401 (621)
T CHL00094 322 AKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGG 401 (621)
T ss_pred cCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeeeeeccCC
Confidence 99998999999999999999999999999999888889999999999999999999998889999999999999999999
Q ss_pred EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEE
Q 047555 512 VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591 (593)
Q Consensus 512 ~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 591 (593)
.+.+|||+|+++|+++++.|.+..|+|+.+.|.||||++....+|..||+|.|+++|+.++|.++|+|+|++|.||+|+|
T Consensus 402 ~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v 481 (621)
T CHL00094 402 VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSV 481 (621)
T ss_pred EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred Ec
Q 047555 592 TA 593 (593)
Q Consensus 592 ~a 593 (593)
+|
T Consensus 482 ~~ 483 (621)
T CHL00094 482 TA 483 (621)
T ss_pred EE
Confidence 85
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=2.3e-81 Score=698.82 Aligned_cols=478 Identities=71% Similarity=1.105 Sum_probs=451.9
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhhh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDD 192 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~ 192 (593)
.+||||||||||+||++.+|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+++.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 37999999999999999999999999999999999999999877899999999999999999999999999999877777
Q ss_pred hhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC
Q 047555 193 ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAG 272 (593)
Q Consensus 193 ~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AG 272 (593)
..+.+||. +..+++.+.+.+. ++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++.||
T Consensus 81 ~~~~~~~~-v~~~~~~~~~~v~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 157 (595)
T TIGR02350 81 EAKRVPYK-VVGDGGDVRVKVD--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 157 (595)
T ss_pred HhhcCCee-EEcCCCceEEEEC--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 78889999 5567787777765 78899999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhcccc-CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhh
Q 047555 273 LEVLRIINEPTAASLAYGFER-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 273 l~~v~li~Ep~AAal~~~~~~-~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~ 351 (593)
++++.+++||+|||++|+... ..+..+||||+||||+|+|++++.++.++++++.++..+||.+||+.|++|+.++|++
T Consensus 158 l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 158 LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 999999999999999998875 5688999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRD 431 (593)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 431 (593)
+++.++..++..+.+|+++||++|+.||....+.+.++.+..+.++..++++.|||++|+++++|+++++.++++++|++
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~ 317 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKD 317 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999988888888766555555678899999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEeeCC
Q 047555 432 AKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGG 511 (593)
Q Consensus 432 ~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~~ 511 (593)
+++...+|+.|+|+||+|++|+|++.|++.||.++....||++|||.|||++|+.+++..+++.+.|++|++||++..++
T Consensus 318 a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~~~~ 397 (595)
T TIGR02350 318 AGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGG 397 (595)
T ss_pred cCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEecCC
Confidence 99999999999999999999999999999999888889999999999999999999988889999999999999999999
Q ss_pred EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEE
Q 047555 512 VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591 (593)
Q Consensus 512 ~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 591 (593)
.+.+||++|+++|++++++|++..|+|+.+.|.||||++....+|..||++.|+++++.++|.++|+|+|++|.||+|+|
T Consensus 398 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v 477 (595)
T TIGR02350 398 VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 (595)
T ss_pred ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred Ec
Q 047555 592 TA 593 (593)
Q Consensus 592 ~a 593 (593)
+|
T Consensus 478 ~~ 479 (595)
T TIGR02350 478 SA 479 (595)
T ss_pred EE
Confidence 85
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.5e-80 Score=688.10 Aligned_cols=467 Identities=46% Similarity=0.754 Sum_probs=436.6
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhhhh
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDE 193 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~~ 193 (593)
+||||||||||+||++.+|+++++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||++|+.+.+++.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999999999999999999999999999999877999999999999999999999999999998876554
Q ss_pred hccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q 047555 194 SKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGL 273 (593)
Q Consensus 194 ~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl 273 (593)
.+.+||.+...+++.+.+.+.. ..++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|++.||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 FSILPYRFVDGPGEMVRLRTVQ--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred cccCCEEEEEcCCCceEEEeCC--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 6778999988888888887653 47899999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhh
Q 047555 274 EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDE 353 (593)
Q Consensus 274 ~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 353 (593)
+++++++||+|||++|+.+...+..+||||+||||+|++++++.++.++++++.++..+||.+||+.|++|+.++++
T Consensus 158 ~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~--- 234 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLG--- 234 (599)
T ss_pred CceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC---
Confidence 99999999999999999887778899999999999999999999999999999999999999999999999997653
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047555 354 GVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAK 433 (593)
Q Consensus 354 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~ 433 (593)
.+...+++.+.+|+.+||++|+.||......+.++. + ..++.+.|||++|+++++|+++++.++++++|++++
T Consensus 235 -~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~-----~-g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~ 307 (599)
T TIGR01991 235 -ISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL-----D-GKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAG 307 (599)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE-----C-CcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344567888999999999999999998888887763 1 246889999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC--CCceEEEecccccceEEeeCC
Q 047555 434 LSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD--VSDIVLLDVTPLSIGLETLGG 511 (593)
Q Consensus 434 ~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~--~~~~~~~~~~~~s~gi~~~~~ 511 (593)
+...+|+.|+||||+|++|+|+++|++.|+..+....||++|||.|||++|+.+++. ..++.+.|++|++||+++.++
T Consensus 308 ~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g 387 (599)
T TIGR01991 308 LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGG 387 (599)
T ss_pred CChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecCC
Confidence 999999999999999999999999999999888889999999999999999999874 357999999999999999999
Q ss_pred EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEE
Q 047555 512 VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591 (593)
Q Consensus 512 ~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 591 (593)
.+.+|||+|+++|+++++.|++..|+|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 388 ~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V 467 (599)
T TIGR01991 388 LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467 (599)
T ss_pred EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ec
Q 047555 592 TA 593 (593)
Q Consensus 592 ~a 593 (593)
+|
T Consensus 468 ~a 469 (599)
T TIGR01991 468 SA 469 (599)
T ss_pred EE
Confidence 86
No 12
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=6.4e-80 Score=684.34 Aligned_cols=466 Identities=46% Similarity=0.750 Sum_probs=434.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
...+||||||||||+||++.+|+++++.|..|++.+||+|+|.++ .+++|..|+.+...+|.++++++||++|+.+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 96 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLADI 96 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh
Confidence 457999999999999999999999999999999999999999876 5999999999999999999999999999998877
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
+...+.+||.+...++|.+.+.+. +..++|+++.+++|++|++.++.+++..+.++|||||++|++.||+++++|++.
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 174 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTA--QGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARL 174 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEec--CCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 666778999988887888887765 347899999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
||++++++++||+|||++|+.+...+..++|||+||||+|+|++++.++.++++++.++..+||.+||+.|++|+.++++
T Consensus 175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~ 254 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG 254 (616)
T ss_pred cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999887678899999999999999999999999999999999999999999999999998775
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALR 430 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 430 (593)
.. ...+++.+.+|+.+||++|+.||....+.+.++. +...|||++|+++++|+++++.++++++|+
T Consensus 255 ~~----~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~ 320 (616)
T PRK05183 255 LS----PRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL----------WQGEITREQFNALIAPLVKRTLLACRRALR 320 (616)
T ss_pred CC----cCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec----------CCCeEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3357888999999999999999998888877742 112499999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC--CCceEEEecccccceEEe
Q 047555 431 DAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD--VSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 431 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~--~~~~~~~~~~~~s~gi~~ 508 (593)
++++...+|+.|+||||+|++|+|++.|+++||..+....||++|||+|||++|+.+++. ..++.+.|++|++||++.
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~ 400 (616)
T PRK05183 321 DAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLET 400 (616)
T ss_pred HcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeecccccccee
Confidence 999999999999999999999999999999999888888999999999999999999875 458999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+.+|||+|+++|+++++.|++..|+|+.+.|.|||||+....+|..||+|.|.|+|+.|+|.++|+|+|++|.||+
T Consensus 401 ~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gi 480 (616)
T PRK05183 401 MGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGL 480 (616)
T ss_pred cCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
|+|+|
T Consensus 481 l~V~a 485 (616)
T PRK05183 481 LSVTA 485 (616)
T ss_pred EEEEE
Confidence 99986
No 13
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.1e-79 Score=687.64 Aligned_cols=479 Identities=54% Similarity=0.858 Sum_probs=443.5
Q ss_pred CCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc-
Q 047555 110 VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS- 188 (593)
Q Consensus 110 ~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~- 188 (593)
..+.+||||||||||+||++.++.++++.|..|++.+||+|+|.++ ++++|+.|+.+...+|.++++++||+||+.++
T Consensus 2 ~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 80 (653)
T PTZ00009 2 TKGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDD 80 (653)
T ss_pred CcccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCc
Confidence 4567999999999999999999999999999999999999999754 78999999999999999999999999999886
Q ss_pred -hhhhhhccCceEEEECCCCcEEEEeCCC--CeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 047555 189 -EVDDESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATK 265 (593)
Q Consensus 189 -~~~~~~~~~~~~v~~~~~g~~~i~~~~~--~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~ 265 (593)
.++...+.|||.++.+.++...+.+... .+.++|+++++++|++|++.++.+++..+.++|||||++|++.||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 160 (653)
T PTZ00009 81 SVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATK 160 (653)
T ss_pred hhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHH
Confidence 4677778899999988888776665433 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEechhHHHHHHhccccC--CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHH
Q 047555 266 DAGRIAGLEVLRIINEPTAASLAYGFERK--NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 266 ~Aa~~AGl~~v~li~Ep~AAal~~~~~~~--~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
+|++.||++++++++||+|||++|+.... .+..+||||+||||+|+|++++.++.++++++.++..+||.+||.+|++
T Consensus 161 ~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 161 DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 99999999999999999999999987643 3678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhh-CCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHH
Q 047555 344 WLAENFKRDE-GVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLK 422 (593)
Q Consensus 344 ~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~ 422 (593)
|+.++|+.++ +.++..+++++.+|+.+||++|+.||....+.+.++.+..+ .++++.|||++|+++++++++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~~ 316 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNTL 316 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHHH
Confidence 9999998776 46777889999999999999999999999998888765432 358899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC-CCCCCCCCChhHHHhHHHHHhhhhcCC----CCceEEE
Q 047555 423 KPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG-KDPNVTVNPDEVVALGAAVQGGVLAGD----VSDIVLL 497 (593)
Q Consensus 423 ~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g-~~v~~~~~p~~aVA~GAal~a~~l~~~----~~~~~~~ 497 (593)
+.++++|++++++..+|+.|+||||+|++|+|+++|++.|+ .++....||++|||+|||++|+.+++. ..++.+.
T Consensus 317 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~ 396 (653)
T PTZ00009 317 QPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLL 396 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEE
Confidence 99999999999998999999999999999999999999996 577889999999999999999999863 4678999
Q ss_pred ecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeE
Q 047555 498 DVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 577 (593)
Q Consensus 498 ~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i 577 (593)
|++|++||++..++.+.+||++|+++|++++++|++..|+|+.+.|.||||++....+|..||+|.+.++|+.++|.++|
T Consensus 397 dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 476 (653)
T PTZ00009 397 DVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQI 476 (653)
T ss_pred eecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999998899
Q ss_pred EEEEEECCCceEEEEc
Q 047555 578 EVKFDIDANGILSVTA 593 (593)
Q Consensus 578 ~v~f~~d~~g~l~v~a 593 (593)
+|+|++|.||+|+|++
T Consensus 477 ~v~f~id~~Gil~v~~ 492 (653)
T PTZ00009 477 EVTFDIDANGILNVSA 492 (653)
T ss_pred EEEEEECCCCeEEEEE
Confidence 9999999999999985
No 14
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4.2e-76 Score=648.13 Aligned_cols=444 Identities=38% Similarity=0.609 Sum_probs=394.8
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
+..+||||||||||+||++.+|.++++.|..|++.+||+|+|.++ .+++|..| +++++||++|+++++.
T Consensus 18 ~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A----------ti~~~KrliG~~~~~~ 86 (595)
T PRK01433 18 RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK----------GLRSIKRLFGKTLKEI 86 (595)
T ss_pred CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh----------hHHHHHHHhCCCchhh
Confidence 457999999999999999999999999999999999999999865 58999987 7899999999987532
Q ss_pred hhhhc--cCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 191 DDESK--QVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 191 ~~~~~--~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
..... ..........++...+.. .++.++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 87 ~~~~~~~~~~k~~~~~~~~~~~~~~--~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa 164 (595)
T PRK01433 87 LNTPALFSLVKDYLDVNSSELKLNF--ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAA 164 (595)
T ss_pred ccchhhHhhhhheeecCCCeeEEEE--CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 11100 000011112223333433 36789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.||++++++++||+|||++|+.+......+||||+||||+|+|++++.++.++++++.|+..+||++||++|++|+..+
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 99999999999999999999998776677899999999999999999999999999999999999999999999999988
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
+.... +.. .++.||++|+.||....... ..+.|||++|+++++|+++++.++++++
T Consensus 245 ~~~~~------~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~~~~i~~~ 300 (595)
T PRK01433 245 FDLPN------SID----TLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERTINIAQEC 300 (595)
T ss_pred cCCCC------CHH----HHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 74322 222 24469999999997664221 1589999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
|++++ ..+|+.|+||||+|++|+|++.|++.|+.++....||+++||+|||++|+.+++...++.+.|++|+++|++.
T Consensus 301 L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi~~ 378 (595)
T PRK01433 301 LEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMEL 378 (595)
T ss_pred HhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccceEEEe
Confidence 99998 5689999999999999999999999999888889999999999999999999887788999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+.+||+||+++|+++++.|++..|+|+.+.|.|||||+....+|..||+|.|+|+|+.|+|.++|+|+|++|.||+
T Consensus 379 ~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gi 458 (595)
T PRK01433 379 YGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458 (595)
T ss_pred cCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
|+|+|
T Consensus 459 l~V~a 463 (595)
T PRK01433 459 LSVSA 463 (595)
T ss_pred EEEEE
Confidence 99986
No 15
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-77 Score=634.32 Aligned_cols=480 Identities=55% Similarity=0.866 Sum_probs=453.6
Q ss_pred cCCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc
Q 047555 109 VVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS 188 (593)
Q Consensus 109 ~~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~ 188 (593)
+..+.+||||||||+++++++.++..+++.|..|++.+||+++|.++ ++++|+.|..+...+|.++++++|+++|+.++
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~ 82 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFD 82 (620)
T ss_pred ccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCcccc
Confidence 34568999999999999999999999999999999999999999976 89999999999999999999999999999998
Q ss_pred --hhhhhhccCceEEEECCCCcEEEEeCCC--CeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHH
Q 047555 189 --EVDDESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTAT 264 (593)
Q Consensus 189 --~~~~~~~~~~~~v~~~~~g~~~i~~~~~--~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l 264 (593)
+++.+.+.|||.+..+..+.+.+.+..+ .+.++++++..+.|.++++.++.+++..+.++|+|||++|++.||+++
T Consensus 83 d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 83 DPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred chhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 7788899999999976666777766554 456899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceEEEechhHHHHHHhccccC--CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 265 KDAGRIAGLEVLRIINEPTAASLAYGFERK--NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 265 ~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~--~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
.+|+..||++++++++||+|||++|+++.+ ...+++|+|+||||+|++++.+.++.+++.+..++.++||.+||+.+.
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHH
Confidence 999999999999999999999999997764 367899999999999999999998988999999999999999999999
Q ss_pred HHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHH
Q 047555 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLK 422 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~ 422 (593)
+|+..+|+++++.++..+++++++|+.+||++|+.||....+.+.++++....+ +...|+|.+|++++.+++..+.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d----~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGID----FYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcccc----ccceeehhhhhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876544 7789999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh-CCCCCCCCCChhHHHhHHHHHhhhhcCC----CCceEEE
Q 047555 423 KPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT-GKDPNVTVNPDEVVALGAAVQGGVLAGD----VSDIVLL 497 (593)
Q Consensus 423 ~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~-g~~v~~~~~p~~aVA~GAal~a~~l~~~----~~~~~~~ 497 (593)
+++..+|.++++...+|+.|+||||++++|.++..+++.| +.....+.||+++||+||+++|+.+.+. ..+++++
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 9999999999999999999999999999999999999999 5678889999999999999999999873 3688999
Q ss_pred ecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeE
Q 047555 498 DVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 577 (593)
Q Consensus 498 ~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i 577 (593)
|+.|+++|+++.++.|.++|++|+.+|+++.++|++..|+|+.+.|.|||||+.+.++|.++|.|.|.|||++|+|+++|
T Consensus 399 d~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~I 478 (620)
T KOG0101|consen 399 DVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 478 (620)
T ss_pred ecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCceEEEEc
Q 047555 578 EVKFDIDANGILSVTA 593 (593)
Q Consensus 578 ~v~f~~d~~g~l~v~a 593 (593)
+++|++|.+|+|.|+|
T Consensus 479 evtfdiD~ngiL~Vta 494 (620)
T KOG0101|consen 479 EVTFDIDANGILNVTA 494 (620)
T ss_pred eEEEecCCCcEEEEee
Confidence 9999999999999986
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-76 Score=645.14 Aligned_cols=459 Identities=66% Similarity=0.998 Sum_probs=436.0
Q ss_pred CCeEEEEEcCccceEEEEEECC-eeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCch
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 189 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~ 189 (593)
...+||||||||||+||+++++ .+.++.|..|.+.+||+|+|.+++++++|..|+.+...+|.++++.+|+++|+..
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~-- 81 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGS-- 81 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCC--
Confidence 4579999999999999999988 7999999999999999999998878999999999999999999999999999861
Q ss_pred hhhhhccCceEEEECCCCc-EEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 190 VDDESKQVSYRVVRDENGN-VKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 190 ~~~~~~~~~~~v~~~~~g~-~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
.+. ..+.+. ++.++++++.+++|++|++.++.+++..+..+|||||++|++.||+++++|+
T Consensus 82 ----------------~~~~~~~~~~--~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~ 143 (579)
T COG0443 82 ----------------NGLKISVEVD--GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAA 143 (579)
T ss_pred ----------------CCCcceeeeC--CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHH
Confidence 111 122222 5789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.||++++++++||+|||++|+.+...+..|+|||+||||||+|++++.++.++++++.++.++||++||.+|.+|+..+
T Consensus 144 ~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 144 RIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred HHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
|+.+.+.++..++..+.+|+.+||++|+.||...+..+.++++..+ .++...|+|++||+++.+++.++...+.++
T Consensus 224 f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~a 299 (579)
T COG0443 224 FKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQA 299 (579)
T ss_pred hhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999989999999999999999999999999999999998876544 457789999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
+.+++++..+|+.|+|+||++++|.+++.++++|+.++....||+++||.|||++|+.+++..++++++|+.|+++|++.
T Consensus 300 l~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~ 379 (579)
T COG0443 300 LKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIET 379 (579)
T ss_pred HHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+..++++++.+|.++...|++..|+|..+.+.+++|++.+..+|+.+|.|.+.++|+.|+|.++|+|+|++|.||+
T Consensus 380 ~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi 459 (579)
T COG0443 380 LGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGI 459 (579)
T ss_pred CcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
+.|+|
T Consensus 460 ~~v~a 464 (579)
T COG0443 460 LNVTA 464 (579)
T ss_pred eEeee
Confidence 99985
No 17
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.5e-75 Score=655.53 Aligned_cols=476 Identities=52% Similarity=0.854 Sum_probs=430.2
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--hhh
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--EVD 191 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~--~~~ 191 (593)
||||||||+|++||++.++.++++.|..|++++||+|+|.++ ++++|..|......+|.++++++|++||+.++ .++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999999977 89999999999999999999999999999876 577
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCe--eeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGK--QFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGR 269 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~--~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~ 269 (593)
.+.+.++|.+..+++|...+.+...+. .++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 788899999999989988887765554 799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhccccCC-CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 270 IAGLEVLRIINEPTAASLAYGFERKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 270 ~AGl~~v~li~Ep~AAal~~~~~~~~-~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
.||++++.+++||+|||++|...... ++.+||||+||||+|++++++.++.+++++..++..+||.+||+.|++++.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999877554 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCC--ceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSL--TQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVE 426 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~--~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 426 (593)
++.+.+.+...+++.+.+|+.+||++|+.||.. ....+.++.+.. + ..++++.|+|++|+++++|+++++.++++
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~--~-~~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYD--D-GEDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEET--T-TEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc--c-ccccccccccceecccccccccccccccc
Confidence 999988888889999999999999999999994 445555543332 1 25789999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC--CCCceEEEecccccc
Q 047555 427 TALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG--DVSDIVLLDVTPLSI 504 (593)
Q Consensus 427 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~--~~~~~~~~~~~~~s~ 504 (593)
++|++++++..+|+.|+|+||+|++|+|++.|++.|+..+....||++|||.|||++|+.+++ ...++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 999999998889999999999999999999999999988888999999999999999999987 567889999999999
Q ss_pred eEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEEC
Q 047555 505 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 584 (593)
Q Consensus 505 gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d 584 (593)
|++..++.+..++++|+++|...+..|.+..++|+.+.|.||||+.....+|..||++.+.++++.++|.++|+|+|++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld 476 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELD 476 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeee
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CCceEEEEc
Q 047555 585 ANGILSVTA 593 (593)
Q Consensus 585 ~~g~l~v~a 593 (593)
.+|+|+|++
T Consensus 477 ~~Gil~V~~ 485 (602)
T PF00012_consen 477 ENGILSVEA 485 (602)
T ss_dssp TTSEEEEEE
T ss_pred eeeehhhhh
Confidence 999999975
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-61 Score=506.07 Aligned_cols=471 Identities=34% Similarity=0.574 Sum_probs=435.5
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--hh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--EV 190 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~--~~ 190 (593)
.++|||||..+|.+|++..+..+++.|+.++|.+|++|+|.+. .|++|.+|..+...++.+++..+||++|+.+. ++
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccc-cceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 3899999999999999999999999999999999999999865 89999999999999999999999999999998 78
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCe--eeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGK--QFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~--~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
+.+.+.+|+.++.+.||.+.+.+...|. .+++++++++||.+|++.+++.+..++.++||+||++|++.||+.+.+|+
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 8899999999999999999888766544 59999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccC-------CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERK-------NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRV 341 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~-------~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l 341 (593)
..||+..+++++|-+|+|++|+.... ++.+++++|+|.+.+.++++.+..+.++++++.++..+||.+||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 99999999999999999999987643 25779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHH
Q 047555 342 VDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRL 421 (593)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i 421 (593)
.+|+..+|+.+++++...++++..||+.+||+.|+.||.+.....+++++..+.+ .+..|+|++||+++.|+++++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~d----vs~~i~ReEfEel~~plL~rv 316 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKD----VSSKIKREEFEELSAPLLERV 316 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecch----hhhhccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999888899998877654 678899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC--CCCceEEEec
Q 047555 422 KKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG--DVSDIVLLDV 499 (593)
Q Consensus 422 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~--~~~~~~~~~~ 499 (593)
...+.++|++++++..||+.|.+|||++++|.|++.|.+.||.+..++.|.++|||+|||+++++++. ++.++.+.|+
T Consensus 317 ~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di 396 (727)
T KOG0103|consen 317 EVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDI 396 (727)
T ss_pred hHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 6778999999
Q ss_pred ccccceEEee----C-CEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecC-cccccCCceeeEEEEeCCCCCCCC
Q 047555 500 TPLSIGLETL----G-GVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGE-REFVRDNKSLGSFRLDGIPPAPRG 573 (593)
Q Consensus 500 ~~~s~gi~~~----~-~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~lg~~~l~~i~~~~~g 573 (593)
.|+++.+++. + +....+||+|.++|..+..+|.... .+.+.++++. ..++.....|+++.+.++.+...|
T Consensus 397 ~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~g 472 (727)
T KOG0103|consen 397 VPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDG 472 (727)
T ss_pred cceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCccc
Confidence 9999988863 2 4556799999999999988988765 5788887776 445546678999999998887774
Q ss_pred -cCeEEEEEEECCCceEEEE
Q 047555 574 -VPQIEVKFDIDANGILSVT 592 (593)
Q Consensus 574 -~~~i~v~f~~d~~g~l~v~ 592 (593)
..+++|+..++.+|+.+|.
T Consensus 473 e~skVKvkvr~n~~Gi~~i~ 492 (727)
T KOG0103|consen 473 EFSKVKVKVRLNEHGIDTIE 492 (727)
T ss_pred cccceeEEEEEcCccceeee
Confidence 6689999999999999875
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-55 Score=456.98 Aligned_cols=468 Identities=30% Similarity=0.507 Sum_probs=401.6
Q ss_pred CCeEEEEEcCccceEEEEEECCee-EEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc-
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKP-TIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS- 188 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~-~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~- 188 (593)
...|++||+|+.+++|++...|-| +|+.|...+|++|++|+|. +++|+||++|.....++|..++..++.+||+...
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 357899999999999999999877 7889999999999999997 4599999999999999999999999999999987
Q ss_pred -hhhhhhccCce-EEEECC-CCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 047555 189 -EVDDESKQVSY-RVVRDE-NGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATK 265 (593)
Q Consensus 189 -~~~~~~~~~~~-~v~~~~-~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~ 265 (593)
.++...+.+|+ .++.++ .+.+.+.+.. ...|++|++++|+|.+.+..++.+...++.++|||||.+|++.+|+++.
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 35556666665 566664 4566666553 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEechhHHHHHHhccccC-----CCceEEEEeeCCceEEEEEEEEc----------CCEEEEEEecCCC
Q 047555 266 DAGRIAGLEVLRIINEPTAASLAYGFERK-----NNETILVFDLGGGTFDVSVLEVG----------DGVFEVLSTSGDT 330 (593)
Q Consensus 266 ~Aa~~AGl~~v~li~Ep~AAal~~~~~~~-----~~~~vlVvD~GggT~Dvsv~~~~----------~~~~~vl~~~~~~ 330 (593)
+|+++||++++.+|++-.|+|+.|+..+. ...+++|+|||+|.|.++++.+. ...+++++.+.+.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 99999999999999999999999998753 37899999999999999999874 2478999999999
Q ss_pred CccHHHHHHHHHHHHHHHhhhhhC--CCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHH
Q 047555 331 HLGGDDFDKRVVDWLAENFKRDEG--VVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRA 408 (593)
Q Consensus 331 ~lGG~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~ 408 (593)
.+||..|+.+|.+||.+.|.+..+ .++..+++++.+|.++|+++|..||.+..+.+.++.+..+. ++...|||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddi----DFr~kvTRe 334 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDI----DFRLKVTRE 334 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhcc----ccccceeHH
Confidence 999999999999999999998764 46778899999999999999999999999999888776654 488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC-CCCCCCCCChhHHHhHHHHHhhhh
Q 047555 409 KFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG-KDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 409 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g-~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
+||++|.++..++..+|+++|..+.++..+|+.|+|.||++|+|.||+.|.+..| .++....|.++|++.||+++|+.|
T Consensus 335 ~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~L 414 (902)
T KOG0104|consen 335 EFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHL 414 (902)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999997 467788999999999999999999
Q ss_pred cC--CCCceEEEecccccceEEeeCC--------EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCc
Q 047555 488 AG--DVSDIVLLDVTPLSIGLETLGG--------VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNK 557 (593)
Q Consensus 488 ~~--~~~~~~~~~~~~~s~gi~~~~~--------~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~ 557 (593)
+. +++++.+.|.+.++|-++..+. .-..+|.++.++|..+..+|+...| .+.+.+-.+.-. .
T Consensus 415 SksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysd---df~~~~n~~~~~-----~ 486 (902)
T KOG0104|consen 415 SKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSD---DFPFNINYGDLG-----Q 486 (902)
T ss_pred cccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCC---ccccccchhhhc-----c
Confidence 86 5678999999999988876543 2235899999999988666654332 233333222110 2
Q ss_pred eeeEEEEeCCCCC----CC---CcCeEEEEEEECCCceEEEE
Q 047555 558 SLGSFRLDGIPPA----PR---GVPQIEVKFDIDANGILSVT 592 (593)
Q Consensus 558 ~lg~~~l~~i~~~----~~---g~~~i~v~f~~d~~g~l~v~ 592 (593)
-+.++.+.|+... +. ...-|++.|.+|.+|++.|+
T Consensus 487 nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~ 528 (902)
T KOG0104|consen 487 NLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVS 528 (902)
T ss_pred CccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEe
Confidence 2447888877643 21 13458999999999999875
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=7.7e-52 Score=440.89 Aligned_cols=338 Identities=29% Similarity=0.417 Sum_probs=288.8
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEE----------------------------------------
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT---------------------------------------- 153 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~---------------------------------------- 153 (593)
++|||||||||+||++++|.++++.+..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6899999999999999999999999999999999999995
Q ss_pred eCCcEEecHHHHHhhhhCCCch--hhhhhhhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHH
Q 047555 154 KIGDRLVGQIAKRQAVVNPENT--FFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 231 (593)
Q Consensus 154 ~~~~~~~G~~A~~~~~~~~~~~--i~~~K~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~ 231 (593)
++++.++|.+|+.+...+|+.+ +..+|++||...- .. +....++++++.+|+
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~----------------~~----------~~~~~~e~l~a~iL~ 135 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGL----------------KP----------QQVALFEDLVCAMML 135 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCC----------------Cc----------cceeCHHHHHHHHHH
Confidence 3456789999999999999988 6799999997520 00 122348999999999
Q ss_pred HHHHHHHHHhCCCcCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEe
Q 047555 232 KLVDDASKFLNDKITKAVVTVPAYFN-----DSQRTA---TKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFD 303 (593)
Q Consensus 232 ~l~~~a~~~l~~~~~~~viTVPa~~~-----~~~r~~---l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD 303 (593)
+|++.++.+++.++.++|||||++|+ +.||++ |++|++.||++++.+++||+|||++|......+..+||+|
T Consensus 136 ~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D 215 (450)
T PRK11678 136 HIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVD 215 (450)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEE
Confidence 99999999999999999999999998 777665 7999999999999999999999999988777789999999
Q ss_pred eCCceEEEEEEEEcCC-------EEEEEEecCCCCccHHHHHHHHH-HHHHHHhhhh----hCCCC--------------
Q 047555 304 LGGGTFDVSVLEVGDG-------VFEVLSTSGDTHLGGDDFDKRVV-DWLAENFKRD----EGVVL-------------- 357 (593)
Q Consensus 304 ~GggT~Dvsv~~~~~~-------~~~vl~~~~~~~lGG~~id~~l~-~~l~~~~~~~----~~~~~-------------- 357 (593)
+||||+|+|++++.+. ..+++++.| ..+||++||+.|+ +++...|+.. .+.++
T Consensus 216 ~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i 294 (450)
T PRK11678 216 IGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDV 294 (450)
T ss_pred eCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhcc
Confidence 9999999999998753 367888887 6899999999997 6777776421 11100
Q ss_pred ---------------------cCCHHHH------------HHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEE
Q 047555 358 ---------------------LNDKQAL------------QRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETT 404 (593)
Q Consensus 358 ---------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~ 404 (593)
..+++.+ .+|+.+||++|+.||....+.+.++.+. .++...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~------~~~~~~ 368 (450)
T PRK11678 295 PAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLATE 368 (450)
T ss_pred chhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC------CCccee
Confidence 0123333 3688999999999999999988887543 236789
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHh
Q 047555 405 LTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 405 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a 484 (593)
|+|++|+++++++++++.++++++|+++++. ++.|+||||+|++|+|++.|++.||.......+|.++||.|+|++|
T Consensus 369 ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a 445 (450)
T PRK11678 369 ISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWA 445 (450)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999865 5889999999999999999999998766678899999999999998
Q ss_pred hhh
Q 047555 485 GVL 487 (593)
Q Consensus 485 ~~l 487 (593)
..+
T Consensus 446 ~~~ 448 (450)
T PRK11678 446 QVV 448 (450)
T ss_pred Hhh
Confidence 753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.9e-38 Score=330.16 Aligned_cols=310 Identities=25% Similarity=0.380 Sum_probs=241.8
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC-cE-EecHHHHHhhhhCCCchhhhhhhhhCCCCchhhh
Q 047555 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG-DR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDD 192 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~-~~-~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~ 192 (593)
+||||||++++++.. ++..++. .||+|+++.++ .. .+|++|+......|.+..
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~---------------- 60 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIV---------------- 60 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEE----------------
Confidence 899999999999875 4555554 59999999643 34 599999765433333321
Q ss_pred hhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC
Q 047555 193 ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAG 272 (593)
Q Consensus 193 ~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AG 272 (593)
+..|.....+...+....+|+++++.+..........+++|||++|++.+|+++++|++.||
T Consensus 61 ------------------~~~pi~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 61 ------------------AIRPLRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred ------------------EEccCCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 11122233455667888888888865543222233469999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhh
Q 047555 273 LEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352 (593)
Q Consensus 273 l~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~ 352 (593)
++.+.+++||+|||++|+.+..++..++|+|+||||||+++++.+... ..++..+||++||+.|.+++..+++..
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~ 197 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLL 197 (336)
T ss_pred CCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchh
Confidence 999999999999999999877677889999999999999999987432 356789999999999999999877543
Q ss_pred hCCCCcCCHHHHHHHHHHHHHHhhhcCCCc----eeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLT----QANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 353 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
.+ .+.||++|+.++... ...+.+. ..+........+.|++++|++++++.++++.+.+++.
T Consensus 198 ~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~--g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~ 262 (336)
T PRK13928 198 IG-------------ERTAEEIKIKIGTAFPGAREEEMEIR--GRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSV 262 (336)
T ss_pred cC-------------HHHHHHHHHHhcccccccCCcEEEEe--cccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 357999999987542 1222221 1111112245689999999999999999999999999
Q ss_pred HHHcC--CCCCCCC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhh
Q 047555 429 LRDAK--LSFNDLD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 429 l~~~~--~~~~~i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
|+.++ +....++ .|+|+||+|++|+++++|++.|+.++....||+++||+||++++..+
T Consensus 263 l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 263 LERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 99986 3345566 79999999999999999999999999889999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=5.6e-38 Score=325.81 Aligned_cols=308 Identities=25% Similarity=0.345 Sum_probs=243.8
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCc--EEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~--~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
.+||||||+++.+ +.+++..++ | .||+|+++.++. ..+|.+|+....++|.+...
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~~~-~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~-------------- 62 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGIIL-N------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVA-------------- 62 (335)
T ss_pred eEEEEcccccEEE--EECCCcEEe-c------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEE--------------
Confidence 5899999999985 445555443 4 499999986544 46999998876666655422
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcC--cEEEEeCCCCCHHHHHHHHHHHH
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKIT--KAVVTVPAYFNDSQRTATKDAGR 269 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~--~~viTVPa~~~~~~r~~l~~Aa~ 269 (593)
..|.....+...++++.+|+++++.+...++.... .+|||||++|++.+|+++.+|++
T Consensus 63 --------------------~~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~ 122 (335)
T PRK13929 63 --------------------VRPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVK 122 (335)
T ss_pred --------------------EecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 11112233445689999999999988777765443 79999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHh
Q 047555 270 IAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENF 349 (593)
Q Consensus 270 ~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~ 349 (593)
.||++.+.+++||.|||++++.+......++|+|+|+||+|+++++.++.. ..++..+||.+||+.|.+++.+.+
T Consensus 123 ~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~~ 197 (335)
T PRK13929 123 NCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKY 197 (335)
T ss_pred HcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998877677889999999999999999876533 355678999999999999998765
Q ss_pred hhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCc----eeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHH
Q 047555 350 KRDEGVVLLNDKQALQRLTEAAEKAKMELSSLT----QANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPV 425 (593)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 425 (593)
+...+ .+.||++|+.++... ...+.+.. .+........+.+++++|++++.+++.++.+.|
T Consensus 198 ~~~~~-------------~~~AE~iK~~l~~~~~~~~~~~~~v~g--~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i 262 (335)
T PRK13929 198 NLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRG--RDLVTGLPKTITLESKEIQGAMRESLLHILEAI 262 (335)
T ss_pred CcCcC-------------HHHHHHHHHHHcCCCCCCCCceEEEeC--CccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 42221 368999999998632 11222211 111111235789999999999999999999999
Q ss_pred HHHHHHcCCC--CCCCC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHh
Q 047555 426 ETALRDAKLS--FNDLD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 426 ~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a 484 (593)
.+.|+++... ...++ +|+|+||+|++|+++++|++.|+.++....||+++|++||+..-
T Consensus 263 ~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 263 RATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999998644 34566 69999999999999999999999999888999999999999873
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=4.2e-36 Score=312.40 Aligned_cols=309 Identities=24% Similarity=0.350 Sum_probs=233.0
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC----Cc--EEecHHHHHhhhhCCCchhhhhhhhhCCCCc
Q 047555 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI----GD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKMS 188 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~----~~--~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~ 188 (593)
+||||||+||.++.... ..++. .||+|+|.++ .. ..+|++|+....+.|++.
T Consensus 5 ~giDlGt~~s~i~~~~~--~~~~~-------~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~------------- 62 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR--GIVLN-------EPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNI------------- 62 (333)
T ss_pred eEEecCcceEEEEECCC--CEEEe-------cCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCE-------------
Confidence 89999999999988533 33442 6999999855 22 569999966543333322
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
.+..|.....+...+.+..+|++++.............+++|||++|+..+|+++++++
T Consensus 63 ---------------------~~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 63 ---------------------VAIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred ---------------------EEEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 12222223344455666777777766544322222237999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.+|++.+.+++||+|||++|+........++|+|+||||+|+++++.++.. ..++..+||++||+.|.+++.++
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~ 196 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRT 196 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876667789999999999999999887533 24567899999999999999876
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce-----eeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ-----ANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKK 423 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~ 423 (593)
+..... ++.||++|+.++.... ..+.+.. .+..........|+++++.+++.+.++++.+
T Consensus 197 ~~~~~~-------------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 261 (333)
T TIGR00904 197 YNLLIG-------------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPVNQIVE 261 (333)
T ss_pred hcccCC-------------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 542221 4679999999875322 1222211 1100111234689999999999999999999
Q ss_pred HHHHHHHHcCCCC-CCC-C-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 424 PVETALRDAKLSF-NDL-D-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 424 ~i~~~l~~~~~~~-~~i-~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
.+.+.++.+.... .++ + .|+|+||+|++|+++++|++.|+.++....||+++||.||++++..
T Consensus 262 ~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 262 AVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999876442 233 3 6999999999999999999999999999999999999999998654
No 24
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.6e-36 Score=313.41 Aligned_cols=310 Identities=25% Similarity=0.364 Sum_probs=234.3
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC-Cc-EEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI-GD-RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
..|||||||++++++...+ ..++. +||+|++.++ ++ .++|++|+.....+|.+.
T Consensus 6 ~~igIDlGt~~~~i~~~~~--~~~~~-------~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~--------------- 61 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGK--GIVLN-------EPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNI--------------- 61 (334)
T ss_pred ceeEEEcCcceEEEEECCC--cEEEe-------cCCEEEEECCCCeEEEecHHHHHHhhcCCCCE---------------
Confidence 3589999999999855433 23332 7999999865 33 479999977654444332
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
.+..+.....+...+.+..+|++++...... ......+++|+|++|++.+|+++++|++.
T Consensus 62 -------------------~~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r~~~~~a~~~ 121 (334)
T PRK13927 62 -------------------VAIRPMKDGVIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVERRAVRESALG 121 (334)
T ss_pred -------------------EEEecCCCCeecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1111112223334455677777776654433 22224799999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
+|++.+.+++||+|||++++.+......++|||+||||||+++++.++.. ..+...+||++||+.|.+++.+++.
T Consensus 122 ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~ 196 (334)
T PRK13927 122 AGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYN 196 (334)
T ss_pred cCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999877667789999999999999999877543 2455789999999999999987664
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce----eeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ----ANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVE 426 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 426 (593)
.... .+.+|++|+.++.... ..+.+.. .+........+.|++++|++++.+.++++.+.|.
T Consensus 197 ~~~~-------------~~~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~ 261 (334)
T PRK13927 197 LLIG-------------ERTAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLSAIVEAVK 261 (334)
T ss_pred cCcC-------------HHHHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 3221 3578999999885432 2222211 1111112347899999999999999999999999
Q ss_pred HHHHHcCCCC-CC-CC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 427 TALRDAKLSF-ND-LD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 427 ~~l~~~~~~~-~~-i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
++|+++.... .+ ++ .|+|+||+|++|+++++|++.|+.++....+|+++||+||++++..
T Consensus 262 ~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 262 VALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 9999886431 23 33 5999999999999999999999999998999999999999999765
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.4e-35 Score=306.31 Aligned_cols=311 Identities=25% Similarity=0.354 Sum_probs=237.0
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC-Cc-EEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI-GD-RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
..|||||||++++++++.++ .++. +||+|++.++ ++ .++|++|+......|.+.
T Consensus 9 ~~vgiDlGt~~t~i~~~~~~--~~~~-------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~--------------- 64 (335)
T PRK13930 9 KDIGIDLGTANTLVYVKGKG--IVLN-------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNI--------------- 64 (335)
T ss_pred cceEEEcCCCcEEEEECCCC--EEEe-------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCe---------------
Confidence 34999999999999987333 2331 5999999853 33 579999976643333221
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
.+..+.....+...+.+..+|+++++............+++|+|++|+..+|+.+.++++.
T Consensus 65 -------------------~~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~ 125 (335)
T PRK13930 65 -------------------EAIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEH 125 (335)
T ss_pred -------------------EEeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 1111222233344567888888888766554344456899999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
+|++.+.+++||+|||++++........++|||+|+||||++++..+... ..+...+||.+||+.|.+++.++++
T Consensus 126 ~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~~ 200 (335)
T PRK13930 126 AGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKYN 200 (335)
T ss_pred cCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHhC
Confidence 99999999999999999998876666678999999999999999877533 2566899999999999999988754
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee----eEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA----NISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVE 426 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 426 (593)
.... .+.||++|+.++..... .+.+.. .+........+.|++++|++++.+.++++.+.+.
T Consensus 201 ~~~~-------------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~ 265 (335)
T PRK13930 201 LLIG-------------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQQIVEAVK 265 (335)
T ss_pred CCCC-------------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHH
Confidence 2211 35799999999754321 222211 1111112346889999999999999999999999
Q ss_pred HHHHHcCCC--CCCCC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 427 TALRDAKLS--FNDLD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 427 ~~l~~~~~~--~~~i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
+.++++... ...++ .|+|+||+|++|+++++|++.|+.++....+|+++||.||++.+..
T Consensus 266 ~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 266 SVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 999987533 12235 4999999999999999999999999988899999999999999764
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=4.6e-35 Score=297.28 Aligned_cols=312 Identities=28% Similarity=0.402 Sum_probs=226.7
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC-cE-EecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG-DR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~-~~-~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
.-+||||||+++.++.. ++..++. .||+|+|+.+. +. .+|++|+. ++|+..
T Consensus 2 ~~igIDLGT~~t~i~~~--~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~---------------m~gktp--- 54 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVK--GKGIVLN-------EPSVVAYDKDTGKILAVGDEAKA---------------MLGKTP--- 54 (326)
T ss_dssp SEEEEEE-SSEEEEEET--TTEEEEE-------EES-EEEETTT--EEEESHHHHT---------------TTTS-G---
T ss_pred CceEEecCcccEEEEEC--CCCEEEe-------cCcEEEEECCCCeEEEEhHHHHH---------------HhhcCC---
Confidence 35899999999999553 3333332 49999999753 33 39999944 444431
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
..+.+..|..+..+...++...+|+++++.+.......-.+++++||+..++.+|+++.+++..
T Consensus 55 ----------------~~i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~ 118 (326)
T PF06723_consen 55 ----------------DNIEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQ 118 (326)
T ss_dssp ----------------TTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHH
T ss_pred ----------------CccEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1223333444556666788889999998877653222335799999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
+|...+.+++||.|||+..+.+..+....||+|+||||||++++..++... +....+||++||+++.+|++++|+
T Consensus 119 aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~-----s~si~~gG~~~DeaI~~~ir~~y~ 193 (326)
T PF06723_consen 119 AGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA-----SRSIRIGGDDIDEAIIRYIREKYN 193 (326)
T ss_dssp TT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE-----EEEES-SHHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE-----EEEEEecCcchhHHHHHHHHHhhC
Confidence 999999999999999999999988889999999999999999998665332 334689999999999999999987
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee--eEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA--NISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~--~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
-..+ .+.||++|++++..... ...+.....+.......++.|+.+++.+++++.+.+|.+.|+++
T Consensus 194 l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~ 260 (326)
T PF06723_consen 194 LLIG-------------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEV 260 (326)
T ss_dssp EE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-------------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 77999999998864321 11233333333334456799999999999999999999999999
Q ss_pred HHHcCCC-CCCC--CeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhh
Q 047555 429 LRDAKLS-FNDL--DEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 429 l~~~~~~-~~~i--~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~ 485 (593)
|++.... ..|| ++|+|+||++++++|.++|++.++.++....+|.++|+.||.....
T Consensus 261 Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 261 LEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 9986544 2244 5799999999999999999999999999999999999999987654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.9e-31 Score=258.77 Aligned_cols=315 Identities=27% Similarity=0.382 Sum_probs=248.4
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC--Cc-E-EecHHHHHhhhhCCCchhhhhhhhhCCCCc
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI--GD-R-LVGQIAKRQAVVNPENTFFSVKRFIGRKMS 188 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~--~~-~-~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~ 188 (593)
.-+|||+||.|+.|+.- ++. ++.+ -||+|++..+ .. . .+|.+| |+++|+..
T Consensus 7 ~diGIDLGTanTlV~~k--~kg-IVl~------ePSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP- 61 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--GKG-IVLN------EPSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTP- 61 (342)
T ss_pred ccceeeecccceEEEEc--Cce-EEec------CceEEEEeecCCCceEEEehHHH---------------HHHhccCC-
Confidence 47899999999999875 222 4444 4999999873 22 2 389998 66777752
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhC-CCcCcEEEEeCCCCCHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN-DKITKAVVTVPAYFNDSQRTATKDA 267 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~-~~~~~~viTVPa~~~~~~r~~l~~A 267 (593)
+++....|..+..+..-++...+|+++++....... .....++++||..-++.+|+++++|
T Consensus 62 ------------------~ni~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea 123 (342)
T COG1077 62 ------------------GNIVAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEA 123 (342)
T ss_pred ------------------CCceEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHH
Confidence 222333344566667778888899999887664322 3334699999999999999999999
Q ss_pred HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q 047555 268 GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347 (593)
Q Consensus 268 a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~ 347 (593)
++.||...+.++.||.|||+........+..-+|||+||||||++++.+++... +....+||+.||+.+.+|+++
T Consensus 124 ~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~-----~~Sirv~GD~~De~Ii~yvr~ 198 (342)
T COG1077 124 AESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS-----SSSVRVGGDKMDEAIIVYVRK 198 (342)
T ss_pred HHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE-----EeeEEEecchhhHHHHHHHHH
Confidence 999999999999999999999999887777889999999999999999987653 555789999999999999999
Q ss_pred HhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee----eEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 047555 348 NFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA----NISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKK 423 (593)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~ 423 (593)
+|+--.+ .+.+|++|.+....-.. ...++....+.-..-.-.++++.+++.+.+++.++.|.+
T Consensus 199 ~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Ive 265 (342)
T COG1077 199 KYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVE 265 (342)
T ss_pred HhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHH
Confidence 9987766 55799999988754221 122222222222222345899999999999999999999
Q ss_pred HHHHHHHHcCCC-CCCC--CeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhc
Q 047555 424 PVETALRDAKLS-FNDL--DEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 424 ~i~~~l~~~~~~-~~~i--~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~ 488 (593)
.++..|++.... ..|| ..++|+||++.+..+.+.|++..+.++....+|..|||+|+.+....+.
T Consensus 266 air~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 266 AIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 999999996644 2333 3599999999999999999999999999999999999999987765543
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=1.3e-29 Score=249.74 Aligned_cols=205 Identities=22% Similarity=0.334 Sum_probs=176.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCc
Q 047555 218 KQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNE 297 (593)
Q Consensus 218 ~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~ 297 (593)
..+..-+....+|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++.+.+++||.|++++|...
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----- 108 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----- 108 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----
Confidence 344566788999999999998888888899999999999999999999999999999999999999999998654
Q ss_pred eEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhh
Q 047555 298 TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKME 377 (593)
Q Consensus 298 ~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 377 (593)
..+|+|+||||+|+++++.+...+ ..+..+||++||+.|.+.+. ++ .++||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~G~i~~-----~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKKGKVIY-----SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEECCeEEE-----EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHh
Confidence 259999999999999987554332 45678999999998875543 11 4689999987
Q ss_pred cCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHH
Q 047555 378 LSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQEL 457 (593)
Q Consensus 378 Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~ 457 (593)
+.. .+++.++++++++++.+.+++.|++. .++.|+|+||++++|+|++.
T Consensus 165 ~~~--------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~ 213 (239)
T TIGR02529 165 HKD--------------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADV 213 (239)
T ss_pred cCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHH
Confidence 541 34577899999999999999999864 46789999999999999999
Q ss_pred HHhHhCCCCCCCCCChhHHHhHHHH
Q 047555 458 VKKMTGKDPNVTVNPDEVVALGAAV 482 (593)
Q Consensus 458 l~~~~g~~v~~~~~p~~aVA~GAal 482 (593)
+++.|+.++....||++++|+||++
T Consensus 214 l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 214 FEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHhCCCcccCCCCCeehhheeec
Confidence 9999999999999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=7e-27 Score=234.40 Aligned_cols=203 Identities=26% Similarity=0.390 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEE
Q 047555 222 AEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILV 301 (593)
Q Consensus 222 ~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlV 301 (593)
..+.....|+++++.++.+.+.++..++++||++|+..+++.+.++++.||++...+++||.|++.++..+ ..++
T Consensus 65 di~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-----~~~v 139 (267)
T PRK15080 65 DFIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-----NGAV 139 (267)
T ss_pred eHHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-----CcEE
Confidence 35677889999999999888888889999999999999999999999999999999999999999987653 2599
Q ss_pred EeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCC
Q 047555 302 FDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSL 381 (593)
Q Consensus 302 vD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 381 (593)
+|+||||||+++++.+...+ .++..+||++||+.|.+++.-. .++||++|+.++
T Consensus 140 vDIGggtt~i~v~~~g~~~~-----~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK~~~~-- 193 (267)
T PRK15080 140 VDIGGGTTGISILKDGKVVY-----SADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYKRDPK-- 193 (267)
T ss_pred EEeCCCcEEEEEEECCeEEE-----EecccCchHHHHHHHHHHhCCC-------------------HHHHHHHHhccC--
Confidence 99999999999987543322 3567999999999998775311 568889888742
Q ss_pred ceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhH
Q 047555 382 TQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM 461 (593)
Q Consensus 382 ~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~ 461 (593)
+++++.++++++++++.+.+++.++.. .++.|+|+||+|++|++++.+++.
T Consensus 194 ------------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 194 ------------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred ------------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 246788999999999999999999863 578999999999999999999999
Q ss_pred hCCCCCCCCCChhHHHhHHHHHh
Q 047555 462 TGKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 462 ~g~~v~~~~~p~~aVA~GAal~a 484 (593)
|+.++....+|++++|.|||+++
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.91 E-value=5.6e-23 Score=216.98 Aligned_cols=195 Identities=22% Similarity=0.364 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHH
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~i 337 (593)
....+.+.+|++.||++...++.||.|+|++++........++|+|+|+||||+++++.+...+ .....+||++|
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~-----~~~i~~GG~~i 231 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY-----TKVIPIGGNHI 231 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE-----EeeecchHHHH
Confidence 5567888999999999999999999999999876655577899999999999999997543222 34468999999
Q ss_pred HHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCC------ceeeEEeccccccCCCCceeEEEecHHHHH
Q 047555 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSL------TQANISLPFITATADGPKHIETTLTRAKFE 411 (593)
Q Consensus 338 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~itr~~~e 411 (593)
|+.+.+.+.. ..++||++|+.++.. ....+.++... ......+++++|+
T Consensus 232 t~~i~~~l~~-------------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~~~l~ 286 (371)
T TIGR01174 232 TKDIAKALRT-------------------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHhCC-------------------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcHHHHH
Confidence 9988765421 167899999999863 23445554332 2355899999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHcCCCCCCCCe-EEEEeCCCChHhHHHHHHhHhCCCCCC------------CCCChhHHH
Q 047555 412 ELCSDLLDRLKKPVE-TALRDAKLSFNDLDE-VILVGGSTRIPAVQELVKKMTGKDPNV------------TVNPDEVVA 477 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-VvLvGG~s~~p~l~~~l~~~~g~~v~~------------~~~p~~aVA 477 (593)
+++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|++++++++.|+.++.. ..+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999998776 56766 999999999999999999999865321 237899999
Q ss_pred hHHHHH
Q 047555 478 LGAAVQ 483 (593)
Q Consensus 478 ~GAal~ 483 (593)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 998864
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.91 E-value=5.4e-23 Score=219.72 Aligned_cols=197 Identities=19% Similarity=0.249 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHH
Q 047555 260 QRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 339 (593)
Q Consensus 260 ~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~ 339 (593)
..+.+.+|++.||++...++.||.|+|.+++.+...+..++|+|+||||||+++++.+... ......+||++|++
T Consensus 167 ~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~-----~~~~i~~GG~~it~ 241 (420)
T PRK09472 167 MAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR-----HTKVIPYAGNVVTS 241 (420)
T ss_pred HHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE-----EEeeeechHHHHHH
Confidence 3445567999999999999999999999998776667889999999999999999843222 34557899999999
Q ss_pred HHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCC------ceeeEEeccccccCCCCceeEEEecHHHHHHH
Q 047555 340 RVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSL------TQANISLPFITATADGPKHIETTLTRAKFEEL 413 (593)
Q Consensus 340 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~ 413 (593)
.|.+.+.-. .+.||++|..+... ....+.++... +. ....+++.+|.++
T Consensus 242 dIa~~l~i~-------------------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~----~~--~~~~i~~~~l~~i 296 (420)
T PRK09472 242 DIAYAFGTP-------------------PSDAEAIKVRHGCALGSIVGKDESVEVPSVG----GR--PPRSLQRQTLAEV 296 (420)
T ss_pred HHHHHhCcC-------------------HHHHHHHHHhcceeccccCCCCceeEecCCC----CC--CCeEEcHHHHHHH
Confidence 987655311 56899999776532 22344444321 11 1257899999999
Q ss_pred HHHHHHHHHHHHHHHH-------HHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCC------------CCCChh
Q 047555 414 CSDLLDRLKKPVETAL-------RDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV------------TVNPDE 474 (593)
Q Consensus 414 ~~~~~~~i~~~i~~~l-------~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~------------~~~p~~ 474 (593)
+++.++++.+.+++.+ .+.++....+++|+|+||++++|+|++++++.|+.++.. ..+|.+
T Consensus 297 i~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ 376 (420)
T PRK09472 297 IEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYY 376 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHH
Confidence 9998888888776544 555666667899999999999999999999999855432 258999
Q ss_pred HHHhHHHHHhhh
Q 047555 475 VVALGAAVQGGV 486 (593)
Q Consensus 475 aVA~GAal~a~~ 486 (593)
+++.|+++|+..
T Consensus 377 ata~Gl~~~~~~ 388 (420)
T PRK09472 377 STAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHHhhh
Confidence 999999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.86 E-value=2.4e-20 Score=194.36 Aligned_cols=205 Identities=27% Similarity=0.414 Sum_probs=169.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecC
Q 047555 249 VVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSG 328 (593)
Q Consensus 249 viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~ 328 (593)
++|+|.. .-+.+.+|++++|+++..++.+|.|++.+.+.+..++..++++|+||||||+++++-+... +.+
T Consensus 159 vit~~~~----~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~-----~~~ 229 (418)
T COG0849 159 VITGPKN----ILENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR-----YTG 229 (418)
T ss_pred EEEcchH----HHHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE-----EEe
Confidence 5555543 5778999999999999999999999999999998889999999999999999999966433 356
Q ss_pred CCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce------eeEEeccccccCCCCceeE
Q 047555 329 DTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ------ANISLPFITATADGPKHIE 402 (593)
Q Consensus 329 ~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~~~~~~~~~~~~~~ 402 (593)
..++||++++..|..-|.-. .+.||+.|..+..... ..++++....+ ..
T Consensus 230 ~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~------~~ 284 (418)
T COG0849 230 VIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGSD------IP 284 (418)
T ss_pred eEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCCc------cc
Confidence 68999999999998876654 5689999999875433 23444433221 25
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCC------------CC
Q 047555 403 TTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV------------TV 470 (593)
Q Consensus 403 ~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~------------~~ 470 (593)
..+++.++.+++++.+.++.++++..|++.+....-..+|+|+||++++|++.+..++.|+.++.. ..
T Consensus 285 ~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~ 364 (418)
T COG0849 285 RQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIAR 364 (418)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhcc
Confidence 689999999999999999999999999999987555689999999999999999999999754321 24
Q ss_pred CChhHHHhHHHHHhhhh
Q 047555 471 NPDEVVALGAAVQGGVL 487 (593)
Q Consensus 471 ~p~~aVA~GAal~a~~l 487 (593)
+|..+.+.|..+++...
T Consensus 365 ~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 365 NPAFSTAVGLLLYGALM 381 (418)
T ss_pred CchhhhhHHHHHHHhhc
Confidence 78999999999998864
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.84 E-value=1.2e-19 Score=191.90 Aligned_cols=309 Identities=19% Similarity=0.187 Sum_probs=204.3
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC---------CcEEecHHHHHhhhhCCCchhhhhhhhhC
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI---------GDRLVGQIAKRQAVVNPENTFFSVKRFIG 184 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~K~~lg 184 (593)
.|.||+||.++++++..++.|..+ +||+++...+ ...++|++|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC--------------
Confidence 378999999999999977766655 5888877643 355678776432100
Q ss_pred CCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHH
Q 047555 185 RKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTAT 264 (593)
Q Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l 264 (593)
...+..|.....+...+.+..+|+++....... ...-..+++++|..++..+|+.+
T Consensus 59 -----------------------~~~~~~P~~~G~i~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r~~~ 114 (371)
T cd00012 59 -----------------------GLELIYPIEHGIVVDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNREKT 114 (371)
T ss_pred -----------------------ceEEcccccCCEEeCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHHHHH
Confidence 011222222334456677788888887643221 22235799999999998888888
Q ss_pred HHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHH
Q 047555 265 KDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 265 ~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
.+. ++..|++.+.++++|.+|+++++. .+.+|||+|+++|+++.+..+.. +........+||.++|+.|.+
T Consensus 115 ~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~G~~---~~~~~~~~~~GG~~l~~~l~~ 186 (371)
T cd00012 115 TEIMFETFNVPALYVAIQAVLSLYASGR-----TTGLVVDSGDGVTHVVPVYDGYV---LPHAIKRLDLAGRDLTRYLKE 186 (371)
T ss_pred HHHhhccCCCCEEEEechHHHHHHhcCC-----CeEEEEECCCCeeEEEEEECCEE---chhhheeccccHHHHHHHHHH
Confidence 775 777999999999999999999875 57799999999999998875421 122234578999999999999
Q ss_pred HHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee---e-----EEeccccccCCCCceeEEEecHHHH---HH
Q 047555 344 WLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA---N-----ISLPFITATADGPKHIETTLTRAKF---EE 412 (593)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~---~-----i~i~~~~~~~~~~~~~~~~itr~~~---e~ 412 (593)
++..+... ... ..-...++.+|+.+...... . ...........-++...+.+..+.| |-
T Consensus 187 ~l~~~~~~---~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~ 256 (371)
T cd00012 187 LLRERGYE---LNS-------SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEI 256 (371)
T ss_pred HHHhcCCC---ccc-------hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHh
Confidence 98765320 010 01134567777665432110 0 0000000001111223466666544 34
Q ss_pred HHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhCC----------CCCCCCCChhH
Q 047555 413 LCSDL-----LDRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTGK----------DPNVTVNPDEV 475 (593)
Q Consensus 413 ~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g~----------~v~~~~~p~~a 475 (593)
+|+|. ...+.+.|.+.++.+..+ ..-.+.|+|+||+|++|++.++|++.+.. .+....+|..+
T Consensus 257 lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~ 336 (371)
T cd00012 257 LFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYS 336 (371)
T ss_pred cCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCcccc
Confidence 45542 347788888888876533 22357799999999999999999998852 12345789999
Q ss_pred HHhHHHHHhhh
Q 047555 476 VALGAAVQGGV 486 (593)
Q Consensus 476 VA~GAal~a~~ 486 (593)
++.||+++|..
T Consensus 337 aw~G~si~as~ 347 (371)
T cd00012 337 VWLGGSILASL 347 (371)
T ss_pred EEeCchhhcCc
Confidence 99999999875
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.80 E-value=1.3e-18 Score=184.26 Aligned_cols=306 Identities=19% Similarity=0.204 Sum_probs=197.4
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC--------cEEecHHHHHhhhhCCCchhhhhhhhhC
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG--------DRLVGQIAKRQAVVNPENTFFSVKRFIG 184 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~--------~~~~G~~A~~~~~~~~~~~i~~~K~~lg 184 (593)
..|+||+||.++++++..++.|.++ +||+|+...++ ..++|++|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 4689999999999999987778766 69998876543 235677663210 0
Q ss_pred CCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHH
Q 047555 185 RKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTAT 264 (593)
Q Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l 264 (593)
...+..|.....+...+.+..+|+++...... ....-..+++++|...+..+|+.+
T Consensus 59 -----------------------~~~~~~P~~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~ 114 (373)
T smart00268 59 -----------------------GLELKYPIEHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKI 114 (373)
T ss_pred -----------------------CceecCCCcCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHH
Confidence 00122222244456678888888888764221 111234689999999889999999
Q ss_pred HHHH-HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHH
Q 047555 265 KDAG-RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 265 ~~Aa-~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
.+.+ +..|++.+.++++|.+|+++++ ..+.+|||+|+++|+++.+..+. -+........+||.++|+.|.+
T Consensus 115 ~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv~~G~---~~~~~~~~~~~GG~~l~~~l~~ 186 (373)
T smart00268 115 LEIMFETFNFPALYIAIQAVLSLYASG-----RTTGLVIDSGDGVTHVVPVVDGY---VLPHAIKRIDIAGRDLTDYLKE 186 (373)
T ss_pred HHHhhccCCCCeEEEeccHHHHHHhCC-----CCEEEEEecCCCcceEEEEECCE---EchhhheeccCcHHHHHHHHHH
Confidence 8885 6789999999999999999987 35679999999999999888442 1222233468999999999999
Q ss_pred HHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce---eeE----------EeccccccCCCCceeEEEecHHHH
Q 047555 344 WLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ---ANI----------SLPFITATADGPKHIETTLTRAKF 410 (593)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~~i----------~i~~~~~~~~~~~~~~~~itr~~~ 410 (593)
++...-. .+ .. ..-.+.++.+|+.+..... ... ..+......+ ...+.+..+.|
T Consensus 187 ~l~~~~~-~~--~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd---g~~~~~~~er~ 253 (373)
T smart00268 187 LLSERGY-QF--NS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPD---GNTIKVGNERF 253 (373)
T ss_pred HHHhcCC-CC--Cc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCC---CCEEEEChHHe
Confidence 8876210 00 00 0113455666665532110 000 0000000011 12244444333
Q ss_pred ---HHHHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC------C--CCCCCCCC
Q 047555 411 ---EELCSDL-----LDRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG------K--DPNVTVNP 472 (593)
Q Consensus 411 ---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g------~--~v~~~~~p 472 (593)
|.+|+|. ...+.+.|.+++.++..+ ..-.+.|+|+||+|++|++.++|++.+. . .+....++
T Consensus 254 ~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~ 333 (373)
T smart00268 254 RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPER 333 (373)
T ss_pred eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCC
Confidence 3344442 246778888888776533 1113569999999999999999998872 1 23334577
Q ss_pred hhHHHhHHHHHhhh
Q 047555 473 DEVVALGAAVQGGV 486 (593)
Q Consensus 473 ~~aVA~GAal~a~~ 486 (593)
..++..||+++|..
T Consensus 334 ~~~~W~G~silas~ 347 (373)
T smart00268 334 KYSVWLGGSILASL 347 (373)
T ss_pred ccceEeCcccccCc
Confidence 88999999988765
No 35
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.77 E-value=5.3e-17 Score=173.84 Aligned_cols=292 Identities=17% Similarity=0.159 Sum_probs=186.6
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC------------cEEecHHHHHhhhhCCCchhhhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG------------DRLVGQIAKRQAVVNPENTFFSV 179 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~------------~~~~G~~A~~~~~~~~~~~i~~~ 179 (593)
...|.||+|+.+++++++.+..|.++ +||+|+...++ ++++|++|...
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~------------ 63 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA------------ 63 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhC------------
Confidence 34799999999999999987788766 68888765331 23455544221
Q ss_pred hhhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHH
Q 047555 180 KRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDS 259 (593)
Q Consensus 180 K~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~ 259 (593)
.+...+..|.....+...+.+..+|+++...... ....-..+++|.|..++..
T Consensus 64 --------------------------~~~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~ 116 (414)
T PTZ00280 64 --------------------------SKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPE 116 (414)
T ss_pred --------------------------cCCcEEecCccCCEeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHH
Confidence 0112233344445566778888888887643211 1122235899999999999
Q ss_pred HHHHHHHH-HHHcCCceEEEechhHHHHHHhccccC-----CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCcc
Q 047555 260 QRTATKDA-GRIAGLEVLRIINEPTAASLAYGFERK-----NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 333 (593)
Q Consensus 260 ~r~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~-----~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lG 333 (593)
+|+.|.+. ++..+++.+.+..+|.++++++..... ...+-+|||+|.++|+++.+..+. . +........+|
T Consensus 117 ~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~--~-l~~~~~~~~~G 193 (414)
T PTZ00280 117 NREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGY--V-IGSSIKHIPLA 193 (414)
T ss_pred HHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCE--E-cccceEEecCc
Confidence 99999887 566699999999999999998733211 233569999999999998777432 1 11122336899
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee-------------eEEeccccccCCCCce
Q 047555 334 GDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA-------------NISLPFITATADGPKH 400 (593)
Q Consensus 334 G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-------------~i~i~~~~~~~~~~~~ 400 (593)
|.++|+.|.++|.++.. .+... ..++.++.+|+.++..... .....+...+..+...
T Consensus 194 G~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~ 263 (414)
T PTZ00280 194 GRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKP 263 (414)
T ss_pred HHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCc
Confidence 99999999999865421 11111 1134566677666532110 0000000011111122
Q ss_pred eEEEecHHHH---HHHHHHHH------HHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC
Q 047555 401 IETTLTRAKF---EELCSDLL------DRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG 463 (593)
Q Consensus 401 ~~~~itr~~~---e~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g 463 (593)
..+.|..+.| |-+|+|-+ ..+.++|.+.+.++... ..-.+.|+|+||+|.+|++.++|++.+.
T Consensus 264 ~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 264 YTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred cEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 4577777777 34666633 25678888888876543 1223679999999999999999998874
No 36
>PTZ00452 actin; Provisional
Probab=99.75 E-value=7.9e-17 Score=169.69 Aligned_cols=308 Identities=17% Similarity=0.152 Sum_probs=200.2
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC---------cEEecHHHHHhhhhCCCchhhhhhh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG---------DRLVGQIAKRQAVVNPENTFFSVKR 181 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~K~ 181 (593)
+...|.||+|+.+++++++.+..|.++ +||+|...++. +.++|++|...
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~-------------- 61 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAK-------------- 61 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhcc--------------
Confidence 445789999999999999988888876 68888765432 23345444210
Q ss_pred hhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHH
Q 047555 182 FIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQR 261 (593)
Q Consensus 182 ~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r 261 (593)
.+...+..|.....+...+.+..+|+++...... ....-..+++|-|..++..+|
T Consensus 62 ------------------------~~~~~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~-v~p~~~pvlitE~~~~~~~~R 116 (375)
T PTZ00452 62 ------------------------RGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELC-MSPEDQPVFMTDAPMNSKFNR 116 (375)
T ss_pred ------------------------ccCcEEcccCcCCEEcCHHHHHHHHHHHHHhhcC-CCcccCceeeecCCCCCHHHH
Confidence 1122233344455666788888888887643221 222234689999999999999
Q ss_pred HHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHH
Q 047555 262 TATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 340 (593)
Q Consensus 262 ~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~ 340 (593)
+.|.+. ++..+++.+.+.+.+.+++++++.. +-+|||+|.+.++++.+.-+- .+........+||.++++.
T Consensus 117 e~l~eilFE~~~vp~~~~~~~~~lslya~g~~-----tglVVDiG~~~t~v~PV~dG~---~l~~~~~r~~~gG~~lt~~ 188 (375)
T PTZ00452 117 ERMTQIMFETFNTPCLYISNEAVLSLYTSGKT-----IGLVVDSGEGVTHCVPVFEGH---QIPQAITKINLAGRLCTDY 188 (375)
T ss_pred HHHHHHHhhccCCceEEEechHHHHHHHCCCc-----eeeeecCCCCcceEEEEECCE---EeccceEEeeccchHHHHH
Confidence 999887 6778999999999999999987653 559999999999998777441 1222223367999999999
Q ss_pred HHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee---eE-------EeccccccCCCCceeEEEecHHHH
Q 047555 341 VVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA---NI-------SLPFITATADGPKHIETTLTRAKF 410 (593)
Q Consensus 341 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~---~i-------~i~~~~~~~~~~~~~~~~itr~~~ 410 (593)
|.++|..+ +..+..... ...++.+|+.++..... +. .....+.. ++...+.+..+.|
T Consensus 189 L~~lL~~~-----~~~~~~~~~-----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~L---PDg~~i~l~~er~ 255 (375)
T PTZ00452 189 LTQILQEL-----GYSLTEPHQ-----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKL---PDGNILTIKSQKF 255 (375)
T ss_pred HHHHHHhc-----CCCCCCHHH-----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEEC---CCCCEEEeehHHh
Confidence 99887543 111111111 22345555555422100 00 00000111 1223466777766
Q ss_pred ---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCC
Q 047555 411 ---EELCSDLL-----DRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNP 472 (593)
Q Consensus 411 ---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p 472 (593)
|-+|+|.+ ..+.+++.+.+..+... ..-.+.|+|+||+|.+|++.++|++.+. .++....++
T Consensus 256 ~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r 335 (375)
T PTZ00452 256 RCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDR 335 (375)
T ss_pred cCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCc
Confidence 44556643 24677888888776533 2223689999999999999999998773 123334567
Q ss_pred hhHHHhHHHHHhhh
Q 047555 473 DEVVALGAAVQGGV 486 (593)
Q Consensus 473 ~~aVA~GAal~a~~ 486 (593)
..++..|++++|..
T Consensus 336 ~~~aW~GgSilasl 349 (375)
T PTZ00452 336 RFSAWIGGSIQCTL 349 (375)
T ss_pred ceeEEECchhhcCc
Confidence 78899999999864
No 37
>PTZ00004 actin-2; Provisional
Probab=99.72 E-value=2.7e-16 Score=166.26 Aligned_cols=302 Identities=16% Similarity=0.174 Sum_probs=196.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC---------cEEecHHHHHhhhhCCCchhhhhhh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG---------DRLVGQIAKRQAVVNPENTFFSVKR 181 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~K~ 181 (593)
....|.||+|+.+++++++.++.|.++ +||+++...+. ..++|+++...
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~-------------- 62 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDK-------------- 62 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhcc--------------
Confidence 445789999999999999988778766 68888765431 23455544211
Q ss_pred hhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHH
Q 047555 182 FIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQR 261 (593)
Q Consensus 182 ~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r 261 (593)
.+...+..|.....+...+.+..+|+++...-.. .......+++|.|..++..+|
T Consensus 63 ------------------------~~~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~~l~-v~~~~~pvllte~~~~~~~~r 117 (378)
T PTZ00004 63 ------------------------RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANR 117 (378)
T ss_pred ------------------------cccceEcccCcCCEEcCHHHHHHHHHHHHHhhcc-cCCccCcceeecCCCCcHHHH
Confidence 0011122233344556677788888886532111 122234688999999999999
Q ss_pred HHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHH
Q 047555 262 TATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 340 (593)
Q Consensus 262 ~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~ 340 (593)
+.+.+. ++..+++.+.+..+|.+++++++. .+-+|||+|.+.|+++.+.-+- .+.......++||.++++.
T Consensus 118 ~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~pV~dG~---~l~~~~~~~~~GG~~lt~~ 189 (378)
T PTZ00004 118 EKMTQIMFETHNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGY---SLPHAIHRLDVAGRDLTEY 189 (378)
T ss_pred HHHHHHHHhhcCCceEEeeccHHHHHHhcCC-----ceEEEEECCCCcEEEEEEECCE---EeecceeeecccHHHHHHH
Confidence 888776 677899999999999999998764 3559999999999998777441 2222334468999999999
Q ss_pred HHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCc-----------------eeeEEeccccccCCCCceeEE
Q 047555 341 VVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLT-----------------QANISLPFITATADGPKHIET 403 (593)
Q Consensus 341 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~~~i~i~~~~~~~~~~~~~~~ 403 (593)
|.++|..+. ..+... .-.+.+++.|+.++... .....+| | .-.+
T Consensus 190 L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP------d---g~~i 250 (378)
T PTZ00004 190 MMKILHERG-----TTFTTT-----AEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP------D---GTII 250 (378)
T ss_pred HHHHHHhcC-----CCCCcH-----HHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC------C---CCEE
Confidence 999886531 111111 01234555665543211 0111111 1 2235
Q ss_pred EecHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------C
Q 047555 404 TLTRAKF---EELCSDL------LDRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------K 464 (593)
Q Consensus 404 ~itr~~~---e~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~ 464 (593)
.+..+.| |-+|+|- ...+.++|.+++.++... ..-...|+|+||+|.+|++.++|++.+. .
T Consensus 251 ~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~ 330 (378)
T PTZ00004 251 TVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKI 330 (378)
T ss_pred EEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccE
Confidence 6666665 3566664 235667888888776533 1123679999999999999999998873 1
Q ss_pred CCCCCCCChhHHHhHHHHHhhh
Q 047555 465 DPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 465 ~v~~~~~p~~aVA~GAal~a~~ 486 (593)
++....++..++.+||+++|..
T Consensus 331 ~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 331 KVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred EEecCCCCceeEEECcccccCc
Confidence 2333457888999999998764
No 38
>PTZ00281 actin; Provisional
Probab=99.71 E-value=9.4e-17 Score=169.53 Aligned_cols=306 Identities=16% Similarity=0.175 Sum_probs=197.1
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC---------cEEecHHHHHhhhhCCCchhhhhhhhh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG---------DRLVGQIAKRQAVVNPENTFFSVKRFI 183 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~K~~l 183 (593)
..|.||+|+.+++++++.+..|..+ +||+|+..++. ..++|+++...
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~---------------- 62 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSK---------------- 62 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhcc----------------
Confidence 4689999999999999988888766 68887764332 22344443210
Q ss_pred CCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 184 GRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 184 g~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
.+...+..|.....+...+.+..+|+++...... ....-..+++|-|..+...+|+.
T Consensus 63 ----------------------~~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l~-v~p~~~pvllte~~~~~~~~re~ 119 (376)
T PTZ00281 63 ----------------------RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREK 119 (376)
T ss_pred ----------------------ccCcEEeccCcCCEEcCHHHHHHHHHHHHHhhcc-CCCccCeEEEecCCCCcHHHHHH
Confidence 0111233333345566777888888887642111 12223468999999999999999
Q ss_pred HHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
|.+. ++..+++.+.+..+|.+++++++. .+-+|||+|.+.+.++-+.-+-.. ........+||.++++.|.
T Consensus 120 l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~PV~dG~~~---~~~~~~~~~GG~~lt~~L~ 191 (376)
T PTZ00281 120 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVMDSGDGVSHTVPIYEGYAL---PHAILRLDLAGRDLTDYMM 191 (376)
T ss_pred HHHHHhcccCCceeEeeccHHHHHHhcCC-----ceEEEEECCCceEEEEEEEecccc---hhheeeccCcHHHHHHHHH
Confidence 9885 778899999999999999998765 356999999999999877655322 2223346899999999999
Q ss_pred HHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce-e--eE-------EeccccccCCCCceeEEEecHHHH--
Q 047555 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ-A--NI-------SLPFITATADGPKHIETTLTRAKF-- 410 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-~--~i-------~i~~~~~~~~~~~~~~~~itr~~~-- 410 (593)
+.|..+- ..+... .-.+.++.+|+.++.... . +. .........| ...+.+..+.|
T Consensus 192 ~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPd---g~~i~i~~er~~~ 258 (376)
T PTZ00281 192 KILTERG-----YSFTTT-----AEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPD---GQVITIGNERFRC 258 (376)
T ss_pred HHHHhcC-----CCCCcH-----HHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCC---CCEEEeeHHHeeC
Confidence 8876531 111110 012346666666542110 0 00 0000001111 23466666655
Q ss_pred -HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCChh
Q 047555 411 -EELCSDLL-----DRLKKPVETALRDAKLSF--NDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNPDE 474 (593)
Q Consensus 411 -e~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p~~ 474 (593)
|-+|+|.+ ..+.++|.+.+.++.... .-.+.|+|+||+|.+|++.++|++.+. .++....++..
T Consensus 259 ~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~ 338 (376)
T PTZ00281 259 PEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKY 338 (376)
T ss_pred cccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCce
Confidence 45666533 246677777777764331 113679999999999999999988773 12333457788
Q ss_pred HHHhHHHHHhhh
Q 047555 475 VVALGAAVQGGV 486 (593)
Q Consensus 475 aVA~GAal~a~~ 486 (593)
++.+|++++|..
T Consensus 339 ~aW~Ggsilasl 350 (376)
T PTZ00281 339 SVWIGGSILASL 350 (376)
T ss_pred eEEECcccccCc
Confidence 999999999874
No 39
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.70 E-value=2.3e-17 Score=149.93 Aligned_cols=196 Identities=26% Similarity=0.387 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCc
Q 047555 228 QVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGG 307 (593)
Q Consensus 228 ~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~Ggg 307 (593)
.+.+++++.+++.++.++++..-++|..-.....+...+..+.||++++.+++||+|||.-..++.. .|+|+|||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg-----~VVDiGGG 150 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG-----GVVDIGGG 150 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC-----cEEEeCCC
Confidence 4568889999999999999999999998877777888888999999999999999999987766544 89999999
Q ss_pred eEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEE
Q 047555 308 TFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANIS 387 (593)
Q Consensus 308 T~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~ 387 (593)
||-+++++-++..| ..+...||.+++.-|+-+ ++++ .+++|+.|+.-...
T Consensus 151 TTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k~~------ 200 (277)
T COG4820 151 TTGISIVKKGKVIY-----SADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHKKG------ 200 (277)
T ss_pred cceeEEEEcCcEEE-----eccCCCCceeEEEEEecc--------cCcC-----------HhHHHHhhhccccc------
Confidence 99999999887665 566778888776544322 2332 56777777652111
Q ss_pred eccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCC
Q 047555 388 LPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN 467 (593)
Q Consensus 388 i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~ 467 (593)
+|+-..++|+++++.+.+.+.++..+ +..++|+||+|.-|.+.+.++++|+.++.
T Consensus 201 --------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~ 255 (277)
T COG4820 201 --------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVH 255 (277)
T ss_pred --------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhccccc
Confidence 12234578999999999999998765 55699999999999999999999999999
Q ss_pred CCCCChhHHHhHHHHH
Q 047555 468 VTVNPDEVVALGAAVQ 483 (593)
Q Consensus 468 ~~~~p~~aVA~GAal~ 483 (593)
.+..|....-+|.|+-
T Consensus 256 ~P~~p~y~TPLgIA~s 271 (277)
T COG4820 256 LPQHPLYMTPLGIASS 271 (277)
T ss_pred cCCCcceechhhhhhc
Confidence 9999998888877754
No 40
>PTZ00466 actin-like protein; Provisional
Probab=99.69 E-value=4e-16 Score=164.54 Aligned_cols=308 Identities=16% Similarity=0.158 Sum_probs=197.1
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC---------cEEecHHHHHhhhhCCCchhhhhhhhh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG---------DRLVGQIAKRQAVVNPENTFFSVKRFI 183 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~K~~l 183 (593)
..|.||+|+.+++++++.+..|.++ +||+|+..+.. ..++|+++...
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~---------------- 68 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEY---------------- 68 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhh----------------
Confidence 4688999999999999988888766 68888765331 23445544211
Q ss_pred CCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 184 GRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 184 g~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
.+...+..|.....+...+.+..+++++.+... ....-..+++|-|..++..+|+.
T Consensus 69 ----------------------~~~~~l~~Pi~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~ 124 (380)
T PTZ00466 69 ----------------------RGLLKVTYPINHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEK 124 (380)
T ss_pred ----------------------CcCceeCccccCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHH
Confidence 011112223334456778888888888864321 12223468999999999999999
Q ss_pred HHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
|.+. ++..+++.+.+.++|.+++++++. .+-+|||+|.+.|.++-+..+ . .+.......++||.++++.|.
T Consensus 125 ~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-----~tglVVD~G~~~t~v~PV~~G--~-~~~~~~~~~~~GG~~lt~~L~ 196 (380)
T PTZ00466 125 IAEVFFETFNVPALFISIQAILSLYSCGK-----TNGTVLDCGDGVCHCVSIYEG--Y-SITNTITRTDVAGRDITTYLG 196 (380)
T ss_pred HHHHHhccCCCCeEEEecchHHHHHhcCC-----ceEEEEeCCCCceEEEEEECC--E-EeecceeEecCchhHHHHHHH
Confidence 8776 677899999999999999998865 356999999999999877633 1 122223346899999999999
Q ss_pred HHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce---eeE---EeccccccCCCCceeEEEecHHHH---HHH
Q 047555 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ---ANI---SLPFITATADGPKHIETTLTRAKF---EEL 413 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~~i---~i~~~~~~~~~~~~~~~~itr~~~---e~~ 413 (593)
+.|.+. +..... . .-++.++.+|+.++.... .+. .-+.......-++...+.+..+.| |-+
T Consensus 197 ~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~L 266 (380)
T PTZ00466 197 YLLRKN-----GHLFNT-S----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVL 266 (380)
T ss_pred HHHHhc-----CCCCCc-H----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccc
Confidence 887642 111100 0 113345566665542110 000 000000000011223466777666 455
Q ss_pred HHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhCC--------CCCCCCCChhHHHh
Q 047555 414 CSDLL-----DRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTGK--------DPNVTVNPDEVVAL 478 (593)
Q Consensus 414 ~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g~--------~v~~~~~p~~aVA~ 478 (593)
|+|-+ ..+.++|.+.+.++..+ ..-...|+|+||+|.+|++.++|++.+.. ++....++..++.+
T Consensus 267 F~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~ 346 (380)
T PTZ00466 267 FNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFI 346 (380)
T ss_pred cCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEE
Confidence 65532 24667777777776543 12236799999999999999999988731 23334577788999
Q ss_pred HHHHHhhh
Q 047555 479 GAAVQGGV 486 (593)
Q Consensus 479 GAal~a~~ 486 (593)
|++++|..
T Consensus 347 GgSilasl 354 (380)
T PTZ00466 347 GGSILASL 354 (380)
T ss_pred CchhhcCc
Confidence 99999864
No 41
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.69 E-value=5.6e-16 Score=165.36 Aligned_cols=312 Identities=21% Similarity=0.265 Sum_probs=191.6
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC----cEEecHHHHHhhhhCCCchhhhhhhhhCCCC
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG----DRLVGQIAKRQAVVNPENTFFSVKRFIGRKM 187 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~----~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~ 187 (593)
..+|-||+|+.+++++++.+..|..+ +||+++...+. ...+|.++...
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~-------------------- 55 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP-------------------- 55 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT--------------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc--------------------
Confidence 46789999999999999877777765 58888876543 35688774221
Q ss_pred chhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q 047555 188 SEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDA 267 (593)
Q Consensus 188 ~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~A 267 (593)
.....+..+.....+...+.+..+|+++...... ....-..++++.|..++...|+.+.+.
T Consensus 56 ------------------~~~~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~-~~~~~~~vll~~~~~~~~~~r~~l~e~ 116 (393)
T PF00022_consen 56 ------------------RSNLELRSPIENGVIVDWDALEEIWDYIFSNLLK-VDPSDHPVLLTEPPFNPRSQREKLAEI 116 (393)
T ss_dssp ------------------GTGEEEEESEETTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHH
T ss_pred ------------------hhheeeeeeccccccccccccccccccccccccc-cccccceeeeeccccCCchhhhhhhhh
Confidence 0011122222234455667778888887764311 222334699999999999999988777
Q ss_pred -HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHH
Q 047555 268 -GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLA 346 (593)
Q Consensus 268 -a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~ 346 (593)
++..+++.+.+++++.+|+++++.. +-+|||+|.+.|.++.+..+ .. +........+||.++++.|.++|.
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~-----tglVVD~G~~~t~v~pV~dG--~~-~~~~~~~~~~GG~~lt~~l~~lL~ 188 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRT-----TGLVVDIGYSSTSVVPVVDG--YV-LPHSIKRSPIGGDDLTEYLKELLK 188 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBS-----SEEEEEESSS-EEEEEEETT--EE--GGGBEEES-SHHHHHHHHHHHHH
T ss_pred hhcccccceeeeeecccccccccccc-----cccccccceeeeeeeeeeec--cc-cccccccccccHHHHHHHHHHHHH
Confidence 6678999999999999999999776 44999999999999887633 21 111223368999999999999988
Q ss_pred HH-hhhhhCCCCc------CCHHHHHHHHHHHHHHhhhcCC---------------CceeeEEeccccccCCCCceeEEE
Q 047555 347 EN-FKRDEGVVLL------NDKQALQRLTEAAEKAKMELSS---------------LTQANISLPFITATADGPKHIETT 404 (593)
Q Consensus 347 ~~-~~~~~~~~~~------~~~~~~~~L~~~~e~~K~~Ls~---------------~~~~~i~i~~~~~~~~~~~~~~~~ 404 (593)
.+ +......... ........-....+.+|+.+.. .....+.+| ++ ..+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP------dg---~~i~ 259 (393)
T PF00022_consen 189 ERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP------DG---QTII 259 (393)
T ss_dssp HT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T------TS---SEEE
T ss_pred hhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc------cc---cccc
Confidence 84 1111000000 0000011112333344433321 111222222 11 2456
Q ss_pred ecHHHH---HHHHHHHH------------HHHHHHHHHHHHHcCCCCC--CCCeEEEEeCCCChHhHHHHHHhHhC----
Q 047555 405 LTRAKF---EELCSDLL------------DRLKKPVETALRDAKLSFN--DLDEVILVGGSTRIPAVQELVKKMTG---- 463 (593)
Q Consensus 405 itr~~~---e~~~~~~~------------~~i~~~i~~~l~~~~~~~~--~i~~VvLvGG~s~~p~l~~~l~~~~g---- 463 (593)
+..+.| |-+|.|.. ..+.++|.+.+.++..... -.+.|+|+||+|++|++.++|.+.+.
T Consensus 260 ~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~ 339 (393)
T PF00022_consen 260 LGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLP 339 (393)
T ss_dssp ESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSG
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhh
Confidence 665555 23334322 1577888888887653311 13679999999999999999988773
Q ss_pred ----CCCCCCC-CChhHHHhHHHHHhhhh
Q 047555 464 ----KDPNVTV-NPDEVVALGAAVQGGVL 487 (593)
Q Consensus 464 ----~~v~~~~-~p~~aVA~GAal~a~~l 487 (593)
.++.... +|..++..||+++|..-
T Consensus 340 ~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 340 SSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp TTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ccccceeccCchhhhhcccccceeeeccc
Confidence 1233344 89999999999998764
No 42
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.64 E-value=4.5e-14 Score=146.88 Aligned_cols=205 Identities=16% Similarity=0.180 Sum_probs=137.7
Q ss_pred EEEEeCCCCCHHH-HHHHHHHHHHc------------CCceEEEechhHHHHHHhcccc--------CCCceEEEEeeCC
Q 047555 248 AVVTVPAYFNDSQ-RTATKDAGRIA------------GLEVLRIINEPTAASLAYGFER--------KNNETILVFDLGG 306 (593)
Q Consensus 248 ~viTVPa~~~~~~-r~~l~~Aa~~A------------Gl~~v~li~Ep~AAal~~~~~~--------~~~~~vlVvD~Gg 306 (593)
++...|..+-..+ ++.+++..... .+..+.+++||.+|.+.+..+. .....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 4469998875444 36677665321 1245789999999988776542 1345789999999
Q ss_pred ceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeE
Q 047555 307 GTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANI 386 (593)
Q Consensus 307 gT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 386 (593)
||||++++. +..+. ...++....|..++.+.+.+.+..+.. +..+ +.. .++++-+. . .+
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~--~~~-------~ie~~l~~---g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKEE---GASI--TPY-------MLEKGLEY---G---AC 253 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhCC---CCCC--CHH-------HHHHHHHc---C---cE
Confidence 999999987 33322 233455788999999999888864422 1111 111 22222111 0 01
Q ss_pred EeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCC
Q 047555 387 SLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDP 466 (593)
Q Consensus 387 ~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v 466 (593)
.+. +.+. +.+ ++++.++++++++++.+.++..+.+ ..+++.|+|+||++.+ +++.|++.|+. +
T Consensus 254 ~~~-------~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~ 316 (344)
T PRK13917 254 KLN-------QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-V 316 (344)
T ss_pred EeC-------CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-e
Confidence 110 0011 222 3567778889999988888887754 2478999999999976 89999999974 4
Q ss_pred CCCCCChhHHHhHHHHHhhhhcCC
Q 047555 467 NVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 467 ~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
....||..|.|+|...+|..+.+.
T Consensus 317 ~~~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 317 EKADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred EEcCChHHHHHHHHHHHHHHHhcc
Confidence 678999999999999999877654
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.54 E-value=1.3e-12 Score=137.02 Aligned_cols=179 Identities=20% Similarity=0.240 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHHcCCceEEEechhHHHHHHhc------cccCCCc-eEEEEeeCCceEEEEEEEEcCCEEEEEEecCC
Q 047555 257 NDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG------FERKNNE-TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 329 (593)
Q Consensus 257 ~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~------~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~ 329 (593)
.....+.+.++++.||++...+..+|.|.+-.+. ....... .++++|+|+++|++++++-+...+ ...
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEE
Confidence 4567888999999999999999999999876662 1122233 499999999999999998665443 555
Q ss_pred CCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHH
Q 047555 330 THLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAK 409 (593)
Q Consensus 330 ~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~ 409 (593)
..+||.+|++.+.+.+. .+ .+.||+.|........ .
T Consensus 216 i~~G~~~i~~~i~~~~~--------~~-----------~~~Ae~~k~~~~~~~~-------------------------~ 251 (348)
T TIGR01175 216 VPFGTRQLTSELSRAYG--------LN-----------PEEAGEAKQQGGLPLL-------------------------Y 251 (348)
T ss_pred eechHHHHHHHHHHHcC--------CC-----------HHHHHHHHhcCCCCCc-------------------------h
Confidence 78999999998865332 11 4678888875321110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCC-------------------
Q 047555 410 FEELCSDLLDRLKKPVETALRDA--KLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV------------------- 468 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~------------------- 468 (593)
-.+++++.++++...|++.++-. ......++.|+|+||++++++|.+.+++.++.++..
T Consensus 252 ~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~ 331 (348)
T TIGR01175 252 DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLA 331 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHH
Confidence 12345666666666666666532 122345899999999999999999999999854321
Q ss_pred CCCChhHHHhHHHHHh
Q 047555 469 TVNPDEVVALGAAVQG 484 (593)
Q Consensus 469 ~~~p~~aVA~GAal~a 484 (593)
...|..++|.|+|+++
T Consensus 332 ~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 332 VDAPALMTALGLALRG 347 (348)
T ss_pred hhhHHHHHHhhHhhcC
Confidence 1356778888888874
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.46 E-value=4e-12 Score=131.44 Aligned_cols=204 Identities=19% Similarity=0.187 Sum_probs=130.0
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceEEEechhHHHHHHhcccc----CCCceEEEEeeCCceEE
Q 047555 244 KITKAVVTVPAYFNDSQRTATKDAGRIA---------GLEVLRIINEPTAASLAYGFER----KNNETILVFDLGGGTFD 310 (593)
Q Consensus 244 ~~~~~viTVPa~~~~~~r~~l~~Aa~~A---------Gl~~v~li~Ep~AAal~~~~~~----~~~~~vlVvD~GggT~D 310 (593)
.+..+|+..|..+...+++.+++.+... -++.+.+++||.+|.+.+..+. .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999888999998886542 3466889999999988776532 24667899999999999
Q ss_pred EEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEecc
Q 047555 311 VSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPF 390 (593)
Q Consensus 311 vsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~ 390 (593)
+.++. +..+ +...++....|-.++-+.+.+.+.++++.. ...+...+ ....+.-|.....
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~----~~~~~~~i---~~~l~~g~~~~~~---------- 240 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGTP----AYRDIDRI---DLALRTGKQPRIY---------- 240 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcCCC----CccCHHHH---HHHHHhCCceeec----------
Confidence 98774 3333 334455577898888888888887765432 00111111 1111111100000
Q ss_pred ccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC-CCCCC
Q 047555 391 ITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK-DPNVT 469 (593)
Q Consensus 391 ~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-~v~~~ 469 (593)
.+. +.|+ +..+..+..++++...+...+. ...+++.|+|+||++. .+++.|++.|+. .+...
T Consensus 241 -------gk~--~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~ 303 (320)
T TIGR03739 241 -------QKP--VDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEV 303 (320)
T ss_pred -------cee--cCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEec
Confidence 001 1121 2222333333444433333332 1245889999999986 778999999975 34567
Q ss_pred CCChhHHHhHHHHHh
Q 047555 470 VNPDEVVALGAAVQG 484 (593)
Q Consensus 470 ~~p~~aVA~GAal~a 484 (593)
.||..|.|+|-..+|
T Consensus 304 ~dp~~ANarG~~~~g 318 (320)
T TIGR03739 304 DEPMFANVRGFQIAG 318 (320)
T ss_pred CCcHHHHHHHHHHhh
Confidence 899999999988765
No 45
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.46 E-value=6.4e-12 Score=125.42 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=129.5
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEe----C----CcEEecHHHHHhhhhCCCchhhhhhhhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK----I----GDRLVGQIAKRQAVVNPENTFFSVKRFI 183 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~----~----~~~~~G~~A~~~~~~~~~~~i~~~K~~l 183 (593)
-..|.||.|+..++++|+..+-|..+ +||++.... + +..+++..|...
T Consensus 11 v~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~~---------------- 66 (426)
T KOG0679|consen 11 VSALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIHV---------------- 66 (426)
T ss_pred cceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhccC----------------
Confidence 35788999999999999988888776 688887421 1 112444443211
Q ss_pred CCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 184 GRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 184 g~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
+ +....+..+.....+...|++.+.+++.++...+ .+.....++||-|++-+.+.|+.
T Consensus 67 --p-------------------r~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek 124 (426)
T KOG0679|consen 67 --P-------------------RPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREK 124 (426)
T ss_pred --C-------------------CCCCeeccchhcCCcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHH
Confidence 0 1111122222244557889999999998864332 22233468999998888888998
Q ss_pred HHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
+.++ ++...++..+++.+|+++|++.+.. +-||||+|++++.++-+..+ +.+....-...+||+.|+..+.
T Consensus 125 ~~ElmFE~~nvPAf~L~k~~v~~AFA~Grs-----talVvDiGa~~~svsPV~DG---~Vlqk~vvks~laGdFl~~~~~ 196 (426)
T KOG0679|consen 125 LTELMFEKLNVPAFYLAKTAVCTAFANGRS-----TALVVDIGATHTSVSPVHDG---YVLQKGVVKSPLAGDFLNDQCR 196 (426)
T ss_pred HHHHHHhhcCCceEEEechHHHHHHhcCCC-----ceEEEEecCCCceeeeeecc---eEeeeeeEecccchHHHHHHHH
Confidence 8776 7788999999999999999998764 56999999999999977644 2222222336899999999999
Q ss_pred HHHHHH
Q 047555 343 DWLAEN 348 (593)
Q Consensus 343 ~~l~~~ 348 (593)
+.|..+
T Consensus 197 q~l~~~ 202 (426)
T KOG0679|consen 197 QLLEPK 202 (426)
T ss_pred HHHhhc
Confidence 998765
No 46
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.43 E-value=5e-12 Score=134.30 Aligned_cols=317 Identities=19% Similarity=0.213 Sum_probs=192.6
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEe----------CCcEEecHHHHHhhhhCCCchhhhhhhhhC
Q 047555 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK----------IGDRLVGQIAKRQAVVNPENTFFSVKRFIG 184 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~----------~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg 184 (593)
|.||.||..++++++.+..|..+ +|+++.-.. .+...+|+++....
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V--------~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~---------------- 64 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTV--------FPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDR---------------- 64 (444)
T ss_pred EEEeCCCceEEeeecCCCCceee--------cccccccccccccccccccccccccCchhhhcc----------------
Confidence 89999999999999998888766 455554331 23344555542210
Q ss_pred CCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHH-HHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 185 RKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDA-SKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a-~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
......+..+.....+...+.+..++++++..- .......-..+++|-|..+....|+.
T Consensus 65 --------------------~~~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~ 124 (444)
T COG5277 65 --------------------DNSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREK 124 (444)
T ss_pred --------------------CCccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHH
Confidence 001222333444555677888889999887753 11111222369999999999999999
Q ss_pred HHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
+.+. ++...+..+.+..++.+++++.+... .+.+|+|+|.+.++++-+-.+-. +........+||.+++..|.
T Consensus 125 ~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~---~~g~ViD~G~~~t~v~PV~DG~~---l~~a~~ri~~gG~~it~~l~ 198 (444)
T COG5277 125 ITELLFETLNVPALYLAIQAVLSLYASGSSD---ETGLVIDSGDSVTHVIPVVDGIV---LPKAVKRIDIGGRDITDYLK 198 (444)
T ss_pred HHHHHHHhcCCcceEeeHHHHHHHHhcCCCC---CceEEEEcCCCceeeEeeecccc---ccccceeeecCcHHHHHHHH
Confidence 8776 78889999999999999999887653 46799999999999997775522 22233446899999999999
Q ss_pred HHHHHHhhhhhCCCCc-----CCHHHHHHHHHHHH------------------HHhhhcCCC---------ceeeEEecc
Q 047555 343 DWLAENFKRDEGVVLL-----NDKQALQRLTEAAE------------------KAKMELSSL---------TQANISLPF 390 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~-----~~~~~~~~L~~~~e------------------~~K~~Ls~~---------~~~~i~i~~ 390 (593)
+.|........+..+. .+.+....+..++. +.++..... ........
T Consensus 199 ~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~- 277 (444)
T COG5277 199 KLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKE- 277 (444)
T ss_pred HHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccc-
Confidence 9998854211111111 11222222222222 222111000 00000000
Q ss_pred ccccCCCCceeEEEecHH-HH---HHHHHHH--H-----HH---------------------------HHHHHHHHHHHc
Q 047555 391 ITATADGPKHIETTLTRA-KF---EELCSDL--L-----DR---------------------------LKKPVETALRDA 432 (593)
Q Consensus 391 ~~~~~~~~~~~~~~itr~-~~---e~~~~~~--~-----~~---------------------------i~~~i~~~l~~~ 432 (593)
....++...+.+-.+ .| |.+|.|- + +. +.+++.+.+..+
T Consensus 278 ---~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~ 354 (444)
T COG5277 278 ---SKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQIC 354 (444)
T ss_pred ---cccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHHhc
Confidence 000111122333222 22 2233332 1 11 455555555544
Q ss_pred CCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCChhHHHhHHHHHhh
Q 047555 433 KLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 433 ~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p~~aVA~GAal~a~ 485 (593)
... ..-+..|+|+||++.+|++.++|.+.+. ..+..+.+|...+.+||+++|.
T Consensus 355 ~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 355 DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred cHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 322 1224679999999999999999999873 2355667999999999999987
No 47
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.43 E-value=1.1e-12 Score=136.85 Aligned_cols=178 Identities=22% Similarity=0.336 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhccc------cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCC
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE------RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTH 331 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~------~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~ 331 (593)
....+.+.++++.||++...+--++.|.+-.+... ......++++|+|+..+.++++.-+...+ .+...
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF-----SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE-----EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE-----EEEEe
Confidence 56778889999999999988888888865544331 12356799999999999999998554333 44578
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHH
Q 047555 332 LGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411 (593)
Q Consensus 332 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e 411 (593)
+||.++++.+.+.+.-. .+++|+.|..-+... +...
T Consensus 210 ~G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~~l~~-------------------------~~~~ 245 (340)
T PF11104_consen 210 IGGNDLTEAIARELGID-------------------FEEAEELKRSGGLPE-------------------------EYDQ 245 (340)
T ss_dssp -SHHHHHHHHHHHTT---------------------HHHHHHHHHHT-------------------------------HH
T ss_pred eCHHHHHHHHHHhcCCC-------------------HHHHHHHHhcCCCCc-------------------------chHH
Confidence 99999999998764432 456677666521100 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCC---------CC----------
Q 047555 412 ELCSDLLDRLKKPVETALRD--AKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV---------TV---------- 470 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~---------~~---------- 470 (593)
+.+++.++++...|++.++- .......|+.|+|+||++++++|.+.|++.++.++.. ..
T Consensus 246 ~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~ 325 (340)
T PF11104_consen 246 DALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQED 325 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhh
Confidence 56667777777777777663 2233457999999999999999999999999854321 11
Q ss_pred CChhHHHhHHHHHh
Q 047555 471 NPDEVVALGAAVQG 484 (593)
Q Consensus 471 ~p~~aVA~GAal~a 484 (593)
.|..++|.|.|+++
T Consensus 326 ~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 326 APQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhcC
Confidence 36779999999874
No 48
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.35 E-value=8.6e-12 Score=128.66 Aligned_cols=173 Identities=18% Similarity=0.295 Sum_probs=99.8
Q ss_pred ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhh
Q 047555 274 EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDE 353 (593)
Q Consensus 274 ~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 353 (593)
..+.+++|+.||.+.+..+..+...++|+|+||+|+|++++.-. .-.+....+...+|-..+.+.+.+.|... ....
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~--~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~-~~~~ 217 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGG--LPDISKCSGTPEIGVSDLYDAIAQALRSA-GIDT 217 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGG--G--EEEEEEETTSSTHHHHHHHHHHTT---SBHH
T ss_pred eeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCC--ccccchhccCCchhHHHHHHHHHHHHHHh-cCCC
Confidence 57889999999999988776666789999999999999988632 11122234446788888888887776652 1100
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047555 354 GVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAK 433 (593)
Q Consensus 354 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~ 433 (593)
+ ...++++-....... ++..... ..-..+++.++++..++++.+.|.+.+.+
T Consensus 218 ------s-------~~~~~~ii~~~~~~~-------~~~~~i~------~~~~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 218 ------S-------ELQIDDIIRNRKDKG-------YLRQVIN------DEDVIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp ------H-------HHHHHHHHHTTT-HH-------HHHHHSS------SHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ------c-------HHHHHHHHHhhhccc-------eeccccc------chhhHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 0 001111100000000 0000000 00012344445555555555555544432
Q ss_pred CCCCCCCeEEEEeCCCChHhHHHHHHhHhC---CCCCCCCCChhHHHhHHH
Q 047555 434 LSFNDLDEVILVGGSTRIPAVQELVKKMTG---KDPNVTVNPDEVVALGAA 481 (593)
Q Consensus 434 ~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g---~~v~~~~~p~~aVA~GAa 481 (593)
..+++.|+|+||++ ..+.+.|++.++ ..+....||+.|.|+|-+
T Consensus 270 --~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 34678999999998 489999999987 357788999999999975
No 49
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=99.20 E-value=1.2e-10 Score=119.58 Aligned_cols=303 Identities=19% Similarity=0.217 Sum_probs=175.8
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEe---------CCcEEecHHHHHhhhhCCCchhhhhhh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK---------IGDRLVGQIAKRQAVVNPENTFFSVKR 181 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~---------~~~~~~G~~A~~~~~~~~~~~i~~~K~ 181 (593)
+...|-||.|+.+++++++.+..|..+ +||+|.... .++..+|++|....
T Consensus 6 ~~~~vViDnGsg~~KaGfag~~~P~~v--------~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~------------- 64 (372)
T KOG0676|consen 6 DIQAVVIDNGSGFVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR------------- 64 (372)
T ss_pred CcceEEEECCCceeecccCCCCCCcee--------cceeccccccccccccccccccccchhhhccc-------------
Confidence 447889999999999999866666544 577774311 12344566553221
Q ss_pred hhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHH
Q 047555 182 FIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQR 261 (593)
Q Consensus 182 ~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r 261 (593)
.+..|.....++.++-+..+++++...-.....+. ..+++|-|..|....|
T Consensus 65 ----------------------------~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee-~pvllte~pl~p~~nR 115 (372)
T KOG0676|consen 65 ----------------------------TLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEE-HPVLLTEPPLNPKANR 115 (372)
T ss_pred ----------------------------cccCccccccccchHHHHHHHHHHHHHhhccCccc-CceEeecCCCCchHhH
Confidence 11222223445666777889988884333222222 5799999999999999
Q ss_pred HHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHH
Q 047555 262 TATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 340 (593)
Q Consensus 262 ~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~ 340 (593)
+.|.+. ++..+.+.+.+.. .|..++++.. +=+|+|+|.|-+++.-+--+ +.+...-....+||.++++.
T Consensus 116 Ek~tqi~FE~fnvpa~yva~--qavlya~g~t-----tG~VvD~G~gvt~~vPI~eG---~~lp~ai~~ldl~G~dlt~~ 185 (372)
T KOG0676|consen 116 EKLTQIMFETFNVPALYVAI--QAVLYASGRT-----TGLVVDSGDGVTHVVPIYEG---YALPHAILRLDLAGRDLTDY 185 (372)
T ss_pred HHHHHHhhhhcCccHhHHHH--HHHHHHcCCe-----eEEEEEcCCCceeeeecccc---cccchhhheecccchhhHHH
Confidence 999887 6666777766522 3333444443 34999999998877655433 22223344578999999998
Q ss_pred HHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce---e-------eEEeccccccCCCCceeEEEecHHHH
Q 047555 341 VVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ---A-------NISLPFITATADGPKHIETTLTRAKF 410 (593)
Q Consensus 341 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~-------~i~i~~~~~~~~~~~~~~~~itr~~~ 410 (593)
+...|.+. +.......+ ++.++.+|+.++.... . .-.+...+...|+.. +.+.-+.|
T Consensus 186 l~~~L~~~-----g~s~~~~~~-----~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~---i~i~~erf 252 (372)
T KOG0676|consen 186 LLKQLRKR-----GYSFTTSAE-----FEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQK---ITIGNERF 252 (372)
T ss_pred HHHHHHhc-----ccccccccH-----HHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCE---EecCCccc
Confidence 77777761 111111111 2334555555542210 0 000111111222221 44444443
Q ss_pred ---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCC
Q 047555 411 ---EELCSDLL-----DRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNP 472 (593)
Q Consensus 411 ---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p 472 (593)
|-+|+|-+ ..+.+.+-+.+.++..+ ..-...|+|+||++.+|++.+++.+.+. .++..+.+.
T Consensus 253 ~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r 332 (372)
T KOG0676|consen 253 RCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPER 332 (372)
T ss_pred ccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCccc
Confidence 33444432 33444555544444332 2223679999999999999999988763 123334444
Q ss_pred hhHHHhHHHHHhhh
Q 047555 473 DEVVALGAAVQGGV 486 (593)
Q Consensus 473 ~~aVA~GAal~a~~ 486 (593)
..++..|+.+.|..
T Consensus 333 ~~s~WlGgSIlasl 346 (372)
T KOG0676|consen 333 KYSAWLGGSILASL 346 (372)
T ss_pred ccceecCceeEeec
Confidence 56788888887764
No 50
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=2.1e-09 Score=106.30 Aligned_cols=160 Identities=20% Similarity=0.266 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhcccc------CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCC
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFER------KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTH 331 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~------~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~ 331 (593)
.+..+...+|++.||++...+--|..|.--+|.... ...-.++|+|+|+..+.+.++.-+...| .....
T Consensus 148 kE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~ 222 (354)
T COG4972 148 KEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVP 222 (354)
T ss_pred hhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----Eeecc
Confidence 345666788999999999888888888866665221 1123478999999999999999776665 66688
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHH
Q 047555 332 LGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411 (593)
Q Consensus 332 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e 411 (593)
+||+.+++.+.+.+.- + ...++.+|....... +.-.
T Consensus 223 ~g~~Qlt~~i~r~~~L--------~-----------~~~a~~~k~~~~~P~-------------------------~y~~ 258 (354)
T COG4972 223 VGTDQLTQEIQRAYSL--------T-----------EEKAEEIKRGGTLPT-------------------------DYGS 258 (354)
T ss_pred CcHHHHHHHHHHHhCC--------C-----------hhHhHHHHhCCCCCC-------------------------chhH
Confidence 9999999887654321 1 345666666643222 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHHc--CCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCC
Q 047555 412 ELCSDLLDRLKKPVETALRDA--KLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDP 466 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v 466 (593)
++..++++++.+.|.+.|+-. .-...+|++|+|.||++.+-+|.+.+.+.++.+.
T Consensus 259 ~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t 315 (354)
T COG4972 259 EVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPT 315 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCe
Confidence 566777777777777776642 2234678999999999999999999999987543
No 51
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.99 E-value=2.8e-09 Score=101.20 Aligned_cols=307 Identities=18% Similarity=0.216 Sum_probs=187.8
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEE-----------eCCcEEecHHHHHhhhhCCCchhhhhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT-----------KIGDRLVGQIAKRQAVVNPENTFFSVK 180 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~-----------~~~~~~~G~~A~~~~~~~~~~~i~~~K 180 (593)
..+|.+|-||.+.+++++..+-|+.+ +||+|.-. +-.+..+|++|.. ++
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~--------FPs~VGRPilR~~e~~g~~~iKD~mvGdease------------lR 63 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHI--------FPSIVGRPILRAEEKVGNIEIKDLMVGDEASE------------LR 63 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccc--------cchhcCchhhhhhhhccCeehhhheccchHHH------------HH
Confidence 56889999999999999977766544 46665421 0023456776643 23
Q ss_pred hhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhC--CCcCcEEEEeCCCCCH
Q 047555 181 RFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN--DKITKAVVTVPAYFND 258 (593)
Q Consensus 181 ~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~--~~~~~~viTVPa~~~~ 258 (593)
.+|.-++ |.....+...+-+..++.+-.- +.++ ..-.++.+|-|..-..
T Consensus 64 s~L~i~Y--------------------------PmeNGivrnwddM~h~WDytF~---ekl~idp~~~KiLLTePPmNP~ 114 (389)
T KOG0677|consen 64 SLLDINY--------------------------PMENGIVRNWDDMEHVWDYTFG---EKLKIDPTNCKILLTEPPMNPT 114 (389)
T ss_pred HHHhcCC--------------------------ccccccccChHHHHHHHHhhhh---hhccCCCccCeEEeeCCCCCcc
Confidence 3333221 1122333344444444444332 2222 2234689999999888
Q ss_pred HHHHHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHH
Q 047555 259 SQRTATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 259 ~~r~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~i 337 (593)
..|+.|.+. ++..||.-+.+.-...-+.++-++... +|+|-|.|-|.+.-+..+ +..-.-.+...+.|+++
T Consensus 115 kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG-----vVvDSGDGVTHi~PVye~---~~l~HLtrRldvAGRdi 186 (389)
T KOG0677|consen 115 KNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG-----VVVDSGDGVTHIVPVYEG---FVLPHLTRRLDVAGRDI 186 (389)
T ss_pred ccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce-----EEEecCCCeeEEeeeecc---eehhhhhhhccccchhH
Confidence 999999887 788999999998888777777666544 999999999998755533 11111234467899999
Q ss_pred HHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCc-----------eeeEEeccccccCCCCceeEEEec
Q 047555 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLT-----------QANISLPFITATADGPKHIETTLT 406 (593)
Q Consensus 338 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i~i~~~~~~~~~~~~~~~~it 406 (593)
++-|.+++..+ .+...-..+ .+..+.+|+.|+... ++.+-++. ..-++.-.+.+-
T Consensus 187 TryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~~----YtLPDGRvIkvG 252 (389)
T KOG0677|consen 187 TRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVES----YTLPDGRVIKVG 252 (389)
T ss_pred HHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeeee----eecCCCcEEEec
Confidence 99999888765 111111122 334555566654211 11111111 111112235556
Q ss_pred HHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCCC--CCCeEEEEeCCCChHhHHHHHHhHhC-------------
Q 047555 407 RAKF---EELCSDLL-----DRLKKPVETALRDAKLSFN--DLDEVILVGGSTRIPAVQELVKKMTG------------- 463 (593)
Q Consensus 407 r~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~~~--~i~~VvLvGG~s~~p~l~~~l~~~~g------------- 463 (593)
.+.| |.+|+|.+ ..+.+++-++++.+.++.. -..+|+|.||++.-|++..+|++.+.
T Consensus 253 ~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~ 332 (389)
T KOG0677|consen 253 GERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTD 332 (389)
T ss_pred ceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChh
Confidence 6666 46777754 3467788888888765421 13689999999999999998887652
Q ss_pred ------CCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 464 ------KDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 464 ------~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.++--+..-.+.|-.|.|.+|.++..
T Consensus 333 ~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 333 KLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred hhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 11222233345677888888877654
No 52
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.99 E-value=4.6e-08 Score=97.46 Aligned_cols=168 Identities=18% Similarity=0.269 Sum_probs=102.8
Q ss_pred EechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCC
Q 047555 278 IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVL 357 (593)
Q Consensus 278 li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~ 357 (593)
.++|-+|-+.+...-....+ .|+|+||..+-+..++ ++.+.-.........|+..|.+.+.+.+.-.
T Consensus 74 ~~~ei~~~~~g~~~~~~~~~--~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~--------- 140 (248)
T TIGR00241 74 IVTEISCHGKGANYLAPEAR--GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVS--------- 140 (248)
T ss_pred ceEEhhHHHHHHHHHCCCCC--EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCC---------
Confidence 56777776554433322222 5999999999888887 4444333344445667777777666554322
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCC----ceeeEEec--cccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 358 LNDKQALQRLTEAAEKAKMELSSL----TQANISLP--FITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRD 431 (593)
Q Consensus 358 ~~~~~~~~~L~~~~e~~K~~Ls~~----~~~~i~i~--~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 431 (593)
.++++..+..-... ....+..+ .+..... .. ..++++..+++.+...+.+.+..
T Consensus 141 ----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~-------g~---~~~di~~~~~~~va~~i~~~~~~ 200 (248)
T TIGR00241 141 ----------VEELGSLAEKADRKAKISSMCTVFAESELISLLAA-------GV---KKEDILAGVYESIAERVAEMLQR 200 (248)
T ss_pred ----------HHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHC-------CC---CHHHHHHHHHHHHHHHHHHHHhh
Confidence 22333333331111 11111110 0000000 01 13566666777777666666654
Q ss_pred cCCCCCCCC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHH
Q 047555 432 AKLSFNDLD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 432 ~~~~~~~i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~ 483 (593)
.+ ++ .|+|+||.++++++.+.+++.++.++..+.+|..+.|+|||++
T Consensus 201 ~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 201 LK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred cC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 43 44 7999999999999999999999999999999999999999973
No 53
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.89 E-value=2.3e-08 Score=104.80 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=61.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHH------------cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEE
Q 047555 247 KAVVTVPAYFNDSQRTATKDAGRI------------AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVL 314 (593)
Q Consensus 247 ~~viTVPa~~~~~~r~~l~~Aa~~------------AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~ 314 (593)
-.+||..+. .++.++++++. ||++.-.++. |.|++.+.+.+ +++..++++|+||||++++++
T Consensus 90 ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-Eke~gVa~IDIGgGTT~iaVf 163 (475)
T PRK10719 90 AVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-ERNTRVLNIDIGGGTANYALF 163 (475)
T ss_pred EEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-hccCceEEEEeCCCceEEEEE
Confidence 367877654 45666666666 5665555555 99999988865 778899999999999999999
Q ss_pred EEcCCEEEEEEecCCCCccHHHHHH
Q 047555 315 EVGDGVFEVLSTSGDTHLGGDDFDK 339 (593)
Q Consensus 315 ~~~~~~~~vl~~~~~~~lGG~~id~ 339 (593)
+-+...+ .+..++||++|+.
T Consensus 164 ~~G~l~~-----T~~l~vGG~~IT~ 183 (475)
T PRK10719 164 DAGKVID-----TACLNVGGRLIET 183 (475)
T ss_pred ECCEEEE-----EEEEecccceEEE
Confidence 9765443 5567899988754
No 54
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=98.75 E-value=8.1e-08 Score=99.43 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=88.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHHHhCCCcC-----cEEEEeCCCCCHHHHHHHHHH-HHHcCCceEEEechhHHHHHHhccc
Q 047555 219 QFAAEEISAQVLRKLVDDASKFLNDKIT-----KAVVTVPAYFNDSQRTATKDA-GRIAGLEVLRIINEPTAASLAYGFE 292 (593)
Q Consensus 219 ~~~~~~l~~~~L~~l~~~a~~~l~~~~~-----~~viTVPa~~~~~~r~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~ 292 (593)
.++..++++++-+-+.....+.++.+.. .+|+-||..|...+.+.+... ....||..+.++.|+.|+.+..+..
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 3466666666544333333444554433 489999999998876665554 7788999999999999999988876
Q ss_pred cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q 047555 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347 (593)
Q Consensus 293 ~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~ 347 (593)
.-.|||+|+-+|.++.++.+- ....+.-....||.||++.|+-++++
T Consensus 276 -----s~CVVdiGAQkTsIaCVEdGv---s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 276 -----SACVVDIGAQKTSIACVEDGV---SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred -----ceeEEEccCcceeEEEeecCc---cccCceEEeccCCchHHHHHHHHHHh
Confidence 449999999999999988651 11222333678999999999887775
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.69 E-value=2.4e-06 Score=86.49 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhh
Q 047555 410 FEELCSDLLDRLKKPVET-ALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
.|+++.-+...+.+.+.. +++...+. +-|+|+||.+....+.+++++.++.++.++.+|...-|.|||+++...
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhhh
Confidence 466666666666655555 55554432 229999999999999999999999999999999999999999998643
No 56
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.67 E-value=1.2e-05 Score=80.51 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCC-CCCCChhHHHhHHHHHhhh
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN-VTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~-~~~~p~~aVA~GAal~a~~ 486 (593)
+++.-+...+.+.+...+.+.++. ..|+|+||.++.+.+.+.+++.++.++. .+.+|..+-|.|||++|..
T Consensus 217 dI~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 217 MVIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 344444444444444444443322 3599999999999999999999998877 5778999999999999864
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.66 E-value=3.2e-06 Score=87.75 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhh
Q 047555 411 EELCSDLLDRLKKPVET-ALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~ 485 (593)
++++.-+...+.+.+.. +++..++. +.|+++||.++.+.+.+.+++.++.++..+.+|+.+-|+|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 34444444444444443 33333221 3499999999999999999999999999999999999999999975
No 58
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.63 E-value=5.9e-06 Score=93.64 Aligned_cols=328 Identities=18% Similarity=0.260 Sum_probs=182.2
Q ss_pred ecHHHHHhhhh----CCCchhhhhhhhhCCCC--c---hh-------hhh--hccCceEEEECCCCcEEEEe-------C
Q 047555 160 VGQIAKRQAVV----NPENTFFSVKRFIGRKM--S---EV-------DDE--SKQVSYRVVRDENGNVKLDC-------P 214 (593)
Q Consensus 160 ~G~~A~~~~~~----~~~~~i~~~K~~lg~~~--~---~~-------~~~--~~~~~~~v~~~~~g~~~i~~-------~ 214 (593)
+|.+|.+.... +...-+.+.||+|=... . .. +.+ ....|+.-..+++|.+.... +
T Consensus 332 VG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~p 411 (1002)
T PF07520_consen 332 VGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERLP 411 (1002)
T ss_pred ecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccCc
Confidence 79998776543 22234678888873321 1 00 000 11122222334455543333 1
Q ss_pred CCCeeeeHHHHHHHHHHHHHHHHHHHhCCC--------------cCcEEEEeCCCCCHHHHHHHHHHHHHc--------C
Q 047555 215 AIGKQFAAEEISAQVLRKLVDDASKFLNDK--------------ITKAVVTVPAYFNDSQRTATKDAGRIA--------G 272 (593)
Q Consensus 215 ~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~--------------~~~~viTVPa~~~~~~r~~l~~Aa~~A--------G 272 (593)
.....|+-.-++..+|.+++.+|.-+.+.. ..++++|||......+|+.++++++.| |
T Consensus 412 vf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lG 491 (1002)
T PF07520_consen 412 VFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALG 491 (1002)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 122347788899999999998887766532 345999999999999999999988876 4
Q ss_pred Cc---------------------eEEEechhHHHHHHhccc---------------------c--------CCCceEEEE
Q 047555 273 LE---------------------VLRIINEPTAASLAYGFE---------------------R--------KNNETILVF 302 (593)
Q Consensus 273 l~---------------------~v~li~Ep~AAal~~~~~---------------------~--------~~~~~vlVv 302 (593)
+. +..=-+|.+|.-+-|++. . .+.-.|.-+
T Consensus 492 w~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASI 571 (1002)
T PF07520_consen 492 WHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASI 571 (1002)
T ss_pred CCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEE
Confidence 31 111124555544433321 0 013458899
Q ss_pred eeCCceEEEEEEEEc----CC-EEEEEE---ecCCCCccHHHHHHHHHH-HHHHHhhhh----------------hCCCC
Q 047555 303 DLGGGTFDVSVLEVG----DG-VFEVLS---TSGDTHLGGDDFDKRVVD-WLAENFKRD----------------EGVVL 357 (593)
Q Consensus 303 D~GggT~Dvsv~~~~----~~-~~~vl~---~~~~~~lGG~~id~~l~~-~l~~~~~~~----------------~~~~~ 357 (593)
|+||||||+.|-... .+ ...+.- ..-+-.+.|+||=..+++ ++...+... +|.+-
T Consensus 572 DIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg 651 (1002)
T PF07520_consen 572 DIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDG 651 (1002)
T ss_pred ecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcc
Confidence 999999999887754 22 111111 122356788888666655 443333322 12221
Q ss_pred cCCHHH--------------HHHHHHHHHHHhhhcCCCceeeEE--------------eccccccC----CC-----Cce
Q 047555 358 LNDKQA--------------LQRLTEAAEKAKMELSSLTQANIS--------------LPFITATA----DG-----PKH 400 (593)
Q Consensus 358 ~~~~~~--------------~~~L~~~~e~~K~~Ls~~~~~~i~--------------i~~~~~~~----~~-----~~~ 400 (593)
....+. ..++++++|..-..-.... .... ++++.... .+ .-+
T Consensus 652 ~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~-~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdild 730 (1002)
T PF07520_consen 652 QSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAE-IDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILD 730 (1002)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcc-ccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceec
Confidence 111100 0124445554332111000 0000 01111000 11 123
Q ss_pred eEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCC----------
Q 047555 401 IETTLTRAKFEELCS---DLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN---------- 467 (593)
Q Consensus 401 ~~~~itr~~~e~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~---------- 467 (593)
+.+.|+.+++...|. -.+.+....+-+++...+ -|-++|+|--|++|+|+..+++....++.
T Consensus 731 v~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~t 805 (1002)
T PF07520_consen 731 VPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRT 805 (1002)
T ss_pred ceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeee
Confidence 457889999988775 445555555555555533 45699999999999999999998854322
Q ss_pred ----------CCCCChhHHHhHHHHHhhhhcCCCCc
Q 047555 468 ----------VTVNPDEVVALGAAVQGGVLAGDVSD 493 (593)
Q Consensus 468 ----------~~~~p~~aVA~GAal~a~~l~~~~~~ 493 (593)
...||...||.||.+.......+.++
T Consensus 806 g~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~n 841 (1002)
T PF07520_consen 806 GNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPN 841 (1002)
T ss_pred cccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCC
Confidence 34599999999997765443323333
No 59
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.38 E-value=3.6e-06 Score=86.40 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC-----CCCCCCCCChhHHHhHHHHHh
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG-----KDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g-----~~v~~~~~p~~aVA~GAal~a 484 (593)
++++.-+...+...+...+.+.. ..-..|+|+||.++.+++.+.|++.++ .++..+.+|+.+-|+|||++|
T Consensus 357 eDIaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 357 EDILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 34444455555555555555432 112459999999999999999999994 567789999999999999975
No 60
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=98.36 E-value=8.7e-06 Score=80.22 Aligned_cols=321 Identities=16% Similarity=0.157 Sum_probs=162.6
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcE--EecHHHHHhhhhCCCchhhhhhhhhCCCCch
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDR--LVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 189 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~--~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~ 189 (593)
...|-+|=|..+.+++.+.+.+|.++ |.++.-++.+.+ ++|.+-.. .|..
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~~v---------pNcl~kaK~~~rr~f~~nei~e------------c~D~------- 54 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPFVV---------PNCLAKAKFGRRRSFLANEIDE------------CKDI------- 54 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCceec---------cchhhhcccccchhhhhhhhhh------------ccCc-------
Confidence 36788999999999999988888886 666766655442 34433211 0110
Q ss_pred hhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH-H
Q 047555 190 VDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDA-G 268 (593)
Q Consensus 190 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~A-a 268 (593)
..+.+..+.....+..++.-..++.++.....-...-.-.++++|-|..--++-.+.+.+. .
T Consensus 55 -----------------ssL~y~rp~erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilF 117 (400)
T KOG0680|consen 55 -----------------SSLFYRRPHERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILF 117 (400)
T ss_pred -----------------cceEEeehhhcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHH
Confidence 0111222222333445556666666654322100112234689999976555555555444 7
Q ss_pred HHcCCceEEEechhHHHHHH-hccccCC-----CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLA-YGFERKN-----NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~-~~~~~~~-----~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
+..+++.+.-.+-.+-+|.. |..+..+ ....+|+|.|-+-|.+.-+-.+...++ +.. ...+||..++..|.
T Consensus 118 Eey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~q--aV~-RiDvGGK~LTn~LK 194 (400)
T KOG0680|consen 118 EEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQ--AVK-RIDVGGKALTNLLK 194 (400)
T ss_pred HHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhh--ceE-EeecchHHHHHHHH
Confidence 78888876544433333333 2222222 568999999999988875554322211 111 36799999999998
Q ss_pred HHHHHH-hhhh--------hCCCCcCCHHHHHHHHHHHHHHhhhcCCCc-eeeEEecccc----------ccCCCCceeE
Q 047555 343 DWLAEN-FKRD--------EGVVLLNDKQALQRLTEAAEKAKMELSSLT-QANISLPFIT----------ATADGPKHIE 402 (593)
Q Consensus 343 ~~l~~~-~~~~--------~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-~~~i~i~~~~----------~~~~~~~~~~ 402 (593)
+++.=+ ++-. .+.++.--. ..+.+..+.+|.....+. ....-+|.+. +.....+...
T Consensus 195 E~iSyR~lNvmdET~vVNeiKEdvcfVS---qnF~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qi 271 (400)
T KOG0680|consen 195 ETISYRHLNVMDETYVVNEIKEDVCFVS---QNFKEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQI 271 (400)
T ss_pred HHhhhhhhcccchhhhhhhhhhheEEec---hhhHHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcce
Confidence 877532 1100 000100000 112233333333322111 1111111110 0000111233
Q ss_pred EEecHHHH---HHHHHHHHH-----HHHHHHHHHHHHcCC--CCCCCCeEEEEeCCCChHhHHHHHHhHhC--------C
Q 047555 403 TTLTRAKF---EELCSDLLD-----RLKKPVETALRDAKL--SFNDLDEVILVGGSTRIPAVQELVKKMTG--------K 464 (593)
Q Consensus 403 ~~itr~~~---e~~~~~~~~-----~i~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~ 464 (593)
++++-+.| |-+|.|--- .|.+.|-+.|....- ...-+..|+++||.++.|+++++|++.+. .
T Consensus 272 i~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v 351 (400)
T KOG0680|consen 272 ITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEV 351 (400)
T ss_pred eeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceE
Confidence 55555555 344444221 122222222222110 01113469999999999999999988762 3
Q ss_pred CCCCCCCChhHHHhHHHHH
Q 047555 465 DPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 465 ~v~~~~~p~~aVA~GAal~ 483 (593)
.+..+.||..-...|+...
T Consensus 352 ~V~~p~dp~~~~W~~g~~~ 370 (400)
T KOG0680|consen 352 SVSVPEDPITFAWEGGSEF 370 (400)
T ss_pred EEecCCCcceeeehhcccc
Confidence 4555667765555555444
No 61
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.32 E-value=1.5e-05 Score=77.39 Aligned_cols=195 Identities=19% Similarity=0.218 Sum_probs=107.0
Q ss_pred HHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHH
Q 047555 266 DAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWL 345 (593)
Q Consensus 266 ~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l 345 (593)
+.-+..|.++..-=-|+++|.+..+.....+..+.++|+|||+||.+++...+... -+.-.| .|+-++..+..
T Consensus 103 ~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~-~iHlAG----AG~mVTmlI~s-- 175 (332)
T PF08841_consen 103 ELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT-AIHLAG----AGNMVTMLINS-- 175 (332)
T ss_dssp HHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE-EEEEE-----SHHHHHHHHHH--
T ss_pred HHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE-EEEecC----CchhhHHHHHH--
Confidence 33456688888888999999999999888888999999999999999998665432 221122 35555554432
Q ss_pred HHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCC-----------CceeeEEeccccc---------cCCCCceeEEEe
Q 047555 346 AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSS-----------LTQANISLPFITA---------TADGPKHIETTL 405 (593)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~-----------~~~~~i~i~~~~~---------~~~~~~~~~~~i 405 (593)
++. ++ + +..+|.+|+-=-. +....+.-..+.. ..++-..+...+
T Consensus 176 --ELG----l~---d-------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~ 239 (332)
T PF08841_consen 176 --ELG----LE---D-------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDL 239 (332)
T ss_dssp --HCT-----S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS
T ss_pred --hhC----CC---C-------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCc
Confidence 222 11 1 4567777763110 0111110000000 000001111223
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCChh
Q 047555 406 TRAKFEELCSDLLDRL-KKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNPDE 474 (593)
Q Consensus 406 tr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p~~ 474 (593)
+-+++..+=+..-+++ ..-..++|++.... ..+|+.|+|+||++.-.-|.+++.+.+. .++.-..-|..
T Consensus 240 ~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRN 319 (332)
T PF08841_consen 240 SLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRN 319 (332)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTST
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchH
Confidence 3444444433333322 22333444443322 4678999999999988888888888773 24555678999
Q ss_pred HHHhHHHHH
Q 047555 475 VVALGAAVQ 483 (593)
Q Consensus 475 aVA~GAal~ 483 (593)
|||.|.++.
T Consensus 320 AVATGLvls 328 (332)
T PF08841_consen 320 AVATGLVLS 328 (332)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 62
>PRK13317 pantothenate kinase; Provisional
Probab=98.28 E-value=0.00016 Score=72.76 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=42.7
Q ss_pred CCCeEEEEe-CCCChHhHHHHHHhHh---CCCCCCCCCChhHHHhHHHHHhh
Q 047555 438 DLDEVILVG-GSTRIPAVQELVKKMT---GKDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 438 ~i~~VvLvG-G~s~~p~l~~~l~~~~---g~~v~~~~~p~~aVA~GAal~a~ 485 (593)
.++.|+++| |.+..|.+++.+.+.+ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356799999 7999999999999988 57788899999999999999875
No 63
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.20 E-value=0.00028 Score=69.74 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC-C----CCCCCCChhHHHhHHHHHh
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK-D----PNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-~----v~~~~~p~~aVA~GAal~a 484 (593)
++++.-+.+.+.+.+...+++.+.. -+.|+|+||.++.+.+.+.|++.++. + +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3444444555555444445543211 13599999999999999999998842 2 5556789999999999975
No 64
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.89 E-value=0.0035 Score=67.66 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=57.1
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCC--------------
Q 047555 402 ETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN-------------- 467 (593)
Q Consensus 402 ~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~-------------- 467 (593)
.+.|.-.++++.+-..--.+......+.+..+. .+-|-++|+|--+++|+++..++.....++.
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~--y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WY 821 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAINH--YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWY 821 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHhh--hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecccee
Confidence 356677777666544311233333333333222 2345699999999999999999987754322
Q ss_pred ------CCCCChhHHHhHHHHHhhhhcCCCCc
Q 047555 468 ------VTVNPDEVVALGAAVQGGVLAGDVSD 493 (593)
Q Consensus 468 ------~~~~p~~aVA~GAal~a~~l~~~~~~ 493 (593)
+..||...+|.||.+.+..+.-+.++
T Consensus 822 PF~k~grIddPKtTAaVGAMLC~Lsl~~rl~n 853 (1014)
T COG4457 822 PFRKQGRIDDPKTTAAVGAMLCALSLELRLPN 853 (1014)
T ss_pred cccccCcCCCcchHHHHHHHHHHHHhhccCcc
Confidence 23599999999998877654443333
No 65
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.57 E-value=0.00081 Score=71.14 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=58.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceEEE---echhHHHHHHhccc---cCCCceEEEEeeCCceEEEEEEEEcCCE
Q 047555 247 KAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI---INEPTAASLAYGFE---RKNNETILVFDLGGGTFDVSVLEVGDGV 320 (593)
Q Consensus 247 ~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~l---i~Ep~AAal~~~~~---~~~~~~vlVvD~GggT~Dvsv~~~~~~~ 320 (593)
-+.||==+.-.+.+++.+...+..||==++.- -.|+.-|+...+.. .+.+..++=+|+||||+.+++++.++..
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~ 166 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVI 166 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEE
Confidence 36777766667888888888888887422221 24666666544432 3457889999999999999999976422
Q ss_pred EEEEEecCCCCccHHHH
Q 047555 321 FEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 321 ~~vl~~~~~~~lGG~~i 337 (593)
+ .++.++||+.|
T Consensus 167 ----~-T~cl~IGGRLi 178 (473)
T PF06277_consen 167 ----D-TACLDIGGRLI 178 (473)
T ss_pred ----E-EEEEeeccEEE
Confidence 2 34467777543
No 66
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.36 E-value=0.025 Score=56.80 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=39.2
Q ss_pred CCCCeEEEEeC-CCChHhHHHHHHhHh---CCCCCCCCCChhHHHhHHHH
Q 047555 437 NDLDEVILVGG-STRIPAVQELVKKMT---GKDPNVTVNPDEVVALGAAV 482 (593)
Q Consensus 437 ~~i~~VvLvGG-~s~~p~l~~~l~~~~---g~~v~~~~~p~~aVA~GAal 482 (593)
..+..|+++|| ....|.+++.+...+ +.+...+.+....+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 577899999998876 46677888999999999986
No 67
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=97.32 E-value=0.0017 Score=68.59 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=114.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC-----cEEecHHHHHhhhhCCCchhhhhhhhhCC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG-----DRLVGQIAKRQAVVNPENTFFSVKRFIGR 185 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~-----~~~~G~~A~~~~~~~~~~~i~~~K~~lg~ 185 (593)
+...|.||.|+..+.++|+....|.++ ++.+++-..++ ..++|..-. .+-+.
T Consensus 22 n~~piVIDNGS~~~RaGw~ge~eP~lv--------FrNvl~r~Rdrk~~~s~t~vgnd~~---------------~~~~~ 78 (645)
T KOG0681|consen 22 NTIPIVIDNGSYECRAGWAGEKEPRLV--------FRNVLTRPRDRKLGASVTLVGNDIL---------------NFQGV 78 (645)
T ss_pred CCCcEEEeCCceeEeecccCCCCccch--------hhhhhccccccccccccccccchhh---------------hhhhh
Confidence 477899999999999999977677765 45555432221 112333221 11010
Q ss_pred CCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCc-CcEEEEeCCCCCHHHHHHH
Q 047555 186 KMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKI-TKAVVTVPAYFNDSQRTAT 264 (593)
Q Consensus 186 ~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~-~~~viTVPa~~~~~~r~~l 264 (593)
. ... ..|..+..++..+++..+|.++..+.--. +..+ ..+++|-+..-....|+.|
T Consensus 79 R------s~~----------------rSPFd~nVvtNwel~E~ilDY~F~~LG~~-~~~idhPIilTE~laNP~~~R~~m 135 (645)
T KOG0681|consen 79 R------SSP----------------RSPFDRNVVTNWELMEQILDYIFGKLGVD-GQGIDHPIILTEALANPVYSRSEM 135 (645)
T ss_pred h------ccC----------------CCCCcCCccccHHHHHHHHHHHHHhcCCC-ccCCCCCeeeehhccChHHHHHHH
Confidence 0 001 11222555678888888888776643211 1112 3489999977777889998
Q ss_pred HHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHH
Q 047555 265 KDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 265 ~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
.+. ++..|++.+.+=-...=+.+. -.....+..-+|+++|..+|.|..+..+...+ ......++||.....-|.+
T Consensus 136 ~elLFE~YgvP~V~yGIDslfS~~h-N~~~~~~~~~liis~g~~~T~vipvldG~~il---~~~kRiN~GG~qa~dYL~~ 211 (645)
T KOG0681|consen 136 VELLFETYGVPKVAYGIDSLFSFYH-NYGKSSNKSGLIISMGHSATHVIPVLDGRLIL---KDVKRINWGGYQAGDYLSR 211 (645)
T ss_pred HHHHHHHcCCcceeechhhHHHHhh-ccCcccCcceEEEecCCCcceeEEEecCchhh---hcceeeccCcchHHHHHHH
Confidence 887 677899887654443333221 11122244789999999999998887665432 2233478899887777766
Q ss_pred HHHHH
Q 047555 344 WLAEN 348 (593)
Q Consensus 344 ~l~~~ 348 (593)
++..+
T Consensus 212 Lmq~K 216 (645)
T KOG0681|consen 212 LMQLK 216 (645)
T ss_pred HHhcc
Confidence 66543
No 68
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.30 E-value=0.24 Score=49.89 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh-----CCCCCCCCCChhHHHhHHHHHh
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT-----GKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~-----g~~v~~~~~p~~aVA~GAal~a 484 (593)
.++++...+.+.+.+...+.+...... .|+|+||..+...+++.+++.+ ..++.....|....+.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 456666677777777777776553321 2999999999987777775444 3455667889999999999986
No 69
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=97.06 E-value=0.0025 Score=63.35 Aligned_cols=196 Identities=20% Similarity=0.227 Sum_probs=105.6
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhhhhh
Q 047555 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDES 194 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~~~ 194 (593)
+-||.||.+++..++.+..|..+ +|++++... ...++..+..... ....++..++|... +.
T Consensus 7 ~V~d~Gtgytklg~agn~~p~~i--------~p~~ia~~~--~~~~s~~~~~~~~----~~~~dldf~ig~ea--l~--- 67 (415)
T KOG0678|consen 7 CVIDNGTGYTKLGYAGNTEPQFI--------IPTAIAVKE--SAAVSSKATRRVK----RGTEDLDFFIGDEA--LD--- 67 (415)
T ss_pred eeeccCcceeeeeccccCCcccc--------cceeEEecc--ccccccchhhhhh----ccccccceecccHH--Hh---
Confidence 78999999999999888777665 588887652 1223332221100 00011111111110 00
Q ss_pred ccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCC--cCcEEEEeCCCCCHHHHHHHHHHH-HHc
Q 047555 195 KQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDK--ITKAVVTVPAYFNDSQRTATKDAG-RIA 271 (593)
Q Consensus 195 ~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~--~~~~viTVPa~~~~~~r~~l~~Aa-~~A 271 (593)
.+...+..+.....+-..+++..|+++-+= .++..+ -....+|.|..-.++.|+-+.+.. +..
T Consensus 68 -----------~~~ysl~ypiRhg~ve~wd~mer~~~q~if---kylr~ePedh~fLlteppln~penreytaeImfEsf 133 (415)
T KOG0678|consen 68 -----------ATTYSLKYPIRHGQVEDWDLMERFWEQCIF---KYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESF 133 (415)
T ss_pred -----------hcccccccceeccccccHHHHHHHHhhhhh---hhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhc
Confidence 011112222223334456677777665322 222222 234789999888888888888773 333
Q ss_pred CCceEEEechhHHHHHHhccccC----CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q 047555 272 GLEVLRIINEPTAASLAYGFERK----NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~~~~~~----~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~ 347 (593)
+...+.+.-...- |++..+... ..-.=+|+|-|.|-+.+..+..+ +.+.+.-....+.|++++.-+..++++
T Consensus 134 nvpglyiAVqavL-ALaaswts~~v~er~ltG~VidsGdgvThvipvaEg---yVigScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 134 NVPGLYIAVQAVL-ALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEG---YVIGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred cCchHHHHHHHHH-HHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecc---eEEeeeeccccccCCchhHHHHHHhhC
Confidence 3333222222221 222222211 12334799999999988777644 444444566889999999877666644
No 70
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.93 E-value=0.0012 Score=63.19 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 410 FEELCSDLLDRLKKPVETALRDAKLS-FNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
..+++.-+++.+.-.++..++...-. ...++.|+++||.++.+.+.+.+.+.++.++.+... .++.+.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 45555666666665555555544211 245889999999999999999999999988876555 88999999999874
No 71
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.74 E-value=0.08 Score=58.23 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCceEEEechhHHHHHHhcccc--CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHH
Q 047555 259 SQRTATKDAGRIAGLEVLRIINEPTAASLAYGFER--KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 336 (593)
Q Consensus 259 ~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~--~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~ 336 (593)
...+.+.++-+..|++.-.+--|-+|-..+.+... ...+..+|+|+|||+|.+++++-+... ...+..+|.-.
T Consensus 92 N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vr 166 (496)
T PRK11031 92 NADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT-----SLFSLSMGCVT 166 (496)
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee-----eeeEEeccchH
Confidence 34556667777789998555555555544443321 223468999999999999998744322 23447888877
Q ss_pred HHHHH
Q 047555 337 FDKRV 341 (593)
Q Consensus 337 id~~l 341 (593)
+.+.|
T Consensus 167 l~e~f 171 (496)
T PRK11031 167 WLERY 171 (496)
T ss_pred HHHHh
Confidence 76655
No 72
>PRK15027 xylulokinase; Provisional
Probab=96.39 E-value=0.0082 Score=65.96 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
.++++.+++.+.-.++..++........++.|+++||+++++...+.+.+.+|.++....+.+++.++|||+.|+.-.|.
T Consensus 359 ~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~ 438 (484)
T PRK15027 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcCC
Confidence 33444444444444444333322122347889999999999999999999999999766677778899999999876553
No 73
>PF13941 MutL: MutL protein
Probab=96.22 E-value=0.015 Score=62.21 Aligned_cols=43 Identities=33% Similarity=0.662 Sum_probs=32.2
Q ss_pred EEEEEcCccceEEEEEE--CCeeEEEeCCCCCccceEEEEEEeCCcEEecHH
Q 047555 114 VVGIDLGTTNSAVAAME--GGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQI 163 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~--~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~ 163 (593)
++.+|||+|+|++..++ .+..+++ |....||.| .+ ++...|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EP-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--Cc-ccHHHHHH
Confidence 68899999999999998 7777777 344568877 22 45666654
No 74
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.20 E-value=0.015 Score=64.80 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhh
Q 047555 406 TRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 406 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~ 485 (593)
+|..+.+++..+++.+.=.++..++...-....++.|.++||.++++...+.+.+.+|.++.+..++ ++.++|||+.|+
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~ 489 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAMLGA 489 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHHHH
Confidence 4666777888888777766666665543223457889999999999999999999999999876665 477999999998
Q ss_pred hhcC
Q 047555 486 VLAG 489 (593)
Q Consensus 486 ~l~~ 489 (593)
.-.|
T Consensus 490 ~~~G 493 (541)
T TIGR01315 490 KAAG 493 (541)
T ss_pred HhcC
Confidence 6554
No 75
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.16 E-value=0.27 Score=52.29 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=41.2
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHH
Q 047555 401 IETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVK 459 (593)
Q Consensus 401 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~ 459 (593)
-.+.||..+++++. ---..+..-++-+|++++++..+|++|+|.||++..=-.++.+.
T Consensus 291 ~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 291 DDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp S-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 35899999997754 33456777888899999999999999999999998666666554
No 76
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.11 E-value=0.063 Score=53.85 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=48.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceEE---EechhHHHHHHhccc---cCCCceEEEEeeCCceEEEEEEEEcCCEE
Q 047555 248 AVVTVPAYFNDSQRTATKDAGRIAGLEVLR---IINEPTAASLAYGFE---RKNNETILVFDLGGGTFDVSVLEVGDGVF 321 (593)
Q Consensus 248 ~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~---li~Ep~AAal~~~~~---~~~~~~vlVvD~GggT~Dvsv~~~~~~~~ 321 (593)
+.||=-..-....|..+......||==++. --.|+.-|.-..+.+ .+....++=+|+||||+.++++..++..
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~- 168 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVS- 168 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccccc-
Confidence 566655555556666665555555532211 123555444433322 3446778899999999999999866421
Q ss_pred EEEEecCCCCccHHH
Q 047555 322 EVLSTSGDTHLGGDD 336 (593)
Q Consensus 322 ~vl~~~~~~~lGG~~ 336 (593)
...+..+||+-
T Consensus 169 ----dTaCLdiGGRL 179 (473)
T COG4819 169 ----DTACLDIGGRL 179 (473)
T ss_pred ----cceeeecCcEE
Confidence 23335566654
No 77
>PLN02669 xylulokinase
Probab=95.96 E-value=0.022 Score=63.53 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 413 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
+++.+++.+.=.++..++..+.. ..++.|+++||+++++.+.+.+.+.||.++.+...+ ++.++|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555554445555444332 457899999999999999999999999988877666 6789999999976
No 78
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=95.87 E-value=0.15 Score=54.98 Aligned_cols=86 Identities=23% Similarity=0.287 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 407 RAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 407 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
.+.+..+....+..+.--.+..++...-....|+.|+.+||-.+.|.+.+.+.+..|.++... ..+++++.|+|+.++.
T Consensus 400 ~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~av 478 (544)
T COG1069 400 PESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFAAV 478 (544)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhcCCeEEee-cccchhhhHHHHHHHH
Confidence 344445555555555433333333333344568999999999999999999999999888765 6677999999999987
Q ss_pred hcCCCCc
Q 047555 487 LAGDVSD 493 (593)
Q Consensus 487 l~~~~~~ 493 (593)
-.+..++
T Consensus 479 Aag~~~d 485 (544)
T COG1069 479 AAGVHPD 485 (544)
T ss_pred HhccCcc
Confidence 6664333
No 79
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.85 E-value=0.015 Score=50.93 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=27.5
Q ss_pred EEEEeeCCceEEEEEEEEcCC-EEEEEEecCCCCcc--HHHHH--HHHHHHHHHH
Q 047555 299 ILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLG--GDDFD--KRVVDWLAEN 348 (593)
Q Consensus 299 vlVvD~GggT~Dvsv~~~~~~-~~~vl~~~~~~~lG--G~~id--~~l~~~l~~~ 348 (593)
++++|+|++++.+.+++.+.. .++++.......-| +.+|. +.+.+-+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a 55 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIA 55 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHH
Confidence 589999999999999997533 34444322111111 67776 6665554443
No 80
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.71 E-value=0.029 Score=61.96 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
+++..+++.+.-.++..++...- ....++.|+++||.++++.+.+.+.+.+|.++....++ ++.++|||+.|+.-.|.
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMA-ETTALGAALLAGLAVGV 457 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEecCcc-cchHHHHHHHHHhhcCc
Confidence 34445555554444444443221 12247889999999999999999999999998766644 47899999999876554
No 81
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.69 E-value=0.031 Score=61.70 Aligned_cols=79 Identities=23% Similarity=0.234 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAK-LSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.-.++..++... .....++.|.++||.++++.+.+.+.+.+|.++.....+ ++.++|||+.|+.-.|
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPVVA-ETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecCcc-cchHHHHHHHHhhhcC
Confidence 44555555555555544444432 112347889999999999999999999999998755544 6889999999987555
Q ss_pred C
Q 047555 490 D 490 (593)
Q Consensus 490 ~ 490 (593)
.
T Consensus 454 ~ 454 (498)
T PRK00047 454 F 454 (498)
T ss_pred c
Confidence 3
No 82
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.64 E-value=0.028 Score=61.97 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.-.++..++.... ....++.|.++||.++++.+.+.+.+.+|.++..... .++.++|||+.|+.-.|
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~-~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPKV-TETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEecCC-CcchHHHHHHHHHhhcC
Confidence 344444555554444444443321 1234788999999999999999999999999876555 46789999999887555
Q ss_pred C
Q 047555 490 D 490 (593)
Q Consensus 490 ~ 490 (593)
.
T Consensus 450 ~ 450 (493)
T TIGR01311 450 Y 450 (493)
T ss_pred c
Confidence 3
No 83
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.64 E-value=0.034 Score=61.09 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.++++.+++.+.-.++..++...- ....++.|+++||.++++.+.+.+.+.+|.++.... ..++.++|||+.|+.-.+
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcC
Confidence 334444444444444444433221 113478899999999999999999999999887655 556889999999987655
Q ss_pred C
Q 047555 490 D 490 (593)
Q Consensus 490 ~ 490 (593)
.
T Consensus 441 ~ 441 (481)
T TIGR01312 441 E 441 (481)
T ss_pred C
Confidence 3
No 84
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.61 E-value=0.031 Score=62.23 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCC-CChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGS-TRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
++++.+++.+.-.++..++........++.|+++||+ ++++.+.+.+.+.||.++.+..++ ++.++|||+.|+.-.|.
T Consensus 409 ~~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 409 LLYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIFAAVAAGV 487 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHHHHHHcCC
Confidence 3445555554444444444332222457899999999 999999999999999998766665 57899999999876553
No 85
>PRK04123 ribulokinase; Provisional
Probab=95.53 E-value=0.033 Score=62.28 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCC-CChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGS-TRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
++++.+++.+.-.+...++........++.|+++||+ ++++.+.+.+.+.+|.++.+..+ .++.++|||+.|+.-.|
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~-~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVAS-DQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCc-cccchHHHHHHHHHHhc
Confidence 4455555555544444444332222357889999999 99999999999999998865554 56889999999987555
No 86
>PRK10854 exopolyphosphatase; Provisional
Probab=95.52 E-value=0.14 Score=56.62 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHH
Q 047555 259 SQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 336 (593)
Q Consensus 259 ~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~ 336 (593)
...+.+.++-+..|++.-.+--|-+|...+.+.. ....+..+|+|+|||+|.+++++-++... ..+..+|...
T Consensus 97 N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~-----~~S~~lG~vr 171 (513)
T PRK10854 97 NATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL-----VESRRMGCVS 171 (513)
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE-----eEEEecceee
Confidence 3455566666777998854444555544444332 22235689999999999999988543222 1113667666
Q ss_pred HHHHH
Q 047555 337 FDKRV 341 (593)
Q Consensus 337 id~~l 341 (593)
+.+.+
T Consensus 172 l~e~f 176 (513)
T PRK10854 172 FAQLY 176 (513)
T ss_pred HHhhh
Confidence 66544
No 87
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.44 E-value=0.037 Score=60.50 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLS-FNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.-.++..++...-. ...++.|.++||+++++.+.+.+.+.+|.++.+..++ ++.++|||+.|+.-.|
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGAAMFGFYGVG 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHHHHHHHHhcC
Confidence 4455555555544444444332211 2247889999999999999999999999998766665 6779999999987555
No 88
>PRK10331 L-fuculokinase; Provisional
Probab=95.42 E-value=0.04 Score=60.34 Aligned_cols=78 Identities=22% Similarity=0.252 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.-.++..++...- ....++.|.++||+++++.+.+.+.+.+|.++.....+ ++.++|||+.|+.-.|
T Consensus 361 ~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~-e~~a~GaA~la~~~~G 439 (470)
T PRK10331 361 GHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDDA-ETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCcc-cchHHHHHHHHHHhcC
Confidence 334455555554444444443321 12357889999999999999999999999998766654 5889999999987555
No 89
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=95.27 E-value=0.015 Score=61.77 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCC--CCCCeEEEEeCCCChHhHHHHHHhHh------C--CCCCCCCCChhHHHhHHHHHhhh
Q 047555 421 LKKPVETALRDAKLSF--NDLDEVILVGGSTRIPAVQELVKKMT------G--KDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~--~~i~~VvLvGG~s~~p~l~~~l~~~~------g--~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
+.+++...|....... .-++.|+|+||++++|++.++|++.+ | ..|....||...+.+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 4445555555432221 12788999999999999999999876 2 34667789999999999999886
No 90
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.24 E-value=0.048 Score=59.40 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=44.7
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVS 492 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~ 492 (593)
.++.|.++||+++++.+.+.+.+.+|.++... +.++.++|||+.|+.-.|..+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G~~~ 439 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALDEIN 439 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcCCcC
Confidence 47889999999999999999999999998643 367889999999987655433
No 91
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.23 E-value=0.046 Score=60.45 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=45.3
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
.++.|+++||.++++.+.+.+.+.+|.++.+..++ ++.++|||+.|+.-.|.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 57899999999999999999999999998766655 58899999999876553
No 92
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.20 E-value=0.068 Score=57.69 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSF-NDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
+.+....++.+.-.++..|+...... ..|+.+.+.||.++.+.+.+.+.+.+|.++..+.+.+. ++.|||+.|+..++
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcC
Confidence 44444556666655555555444333 46888999999999999999999999999999999988 99999999998776
Q ss_pred C
Q 047555 490 D 490 (593)
Q Consensus 490 ~ 490 (593)
.
T Consensus 465 ~ 465 (516)
T KOG2517|consen 465 K 465 (516)
T ss_pred C
Confidence 5
No 93
>PLN02295 glycerol kinase
Probab=94.95 E-value=0.068 Score=59.20 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC----C--CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHH
Q 047555 410 FEELCSDLLDRLKKPVETALRDAK----L--SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~~l~~~~----~--~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~ 483 (593)
-.++++.+++.+.=.++..++... . ....++.|.++||+++++.+.+.+.+.+|.++..... .++.++|||+.
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~-~e~~alGaA~~ 456 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPAD-IETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCc-cccHHHHHHHH
Confidence 344445555555444444444322 1 1234788999999999999999999999999965554 46889999999
Q ss_pred hhhhcC
Q 047555 484 GGVLAG 489 (593)
Q Consensus 484 a~~l~~ 489 (593)
|+.-.|
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 887655
No 94
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.93 E-value=0.24 Score=50.78 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCceEEEechhHHHHHHhc-ccc-CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHH
Q 047555 260 QRTATKDAGRIAGLEVLRIINEPTAASLAYG-FER-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 260 ~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~-~~~-~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~i 337 (593)
....+.+.-+..|++. .+++..+=|.+.|. ... -.....+++|+|||++.++++.-++.. ...+.++|...+
T Consensus 87 ~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~-----~~~Sl~lG~vrl 160 (300)
T TIGR03706 87 GPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG-----EGVSLPLGCVRL 160 (300)
T ss_pred HHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe-----EEEEEccceEEh
Confidence 3444555556679877 46655555444442 211 112235999999999999988644322 233466777666
Q ss_pred HHHH
Q 047555 338 DKRV 341 (593)
Q Consensus 338 d~~l 341 (593)
.+.|
T Consensus 161 ~e~f 164 (300)
T TIGR03706 161 TEQF 164 (300)
T ss_pred HHhh
Confidence 6554
No 95
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.79 E-value=0.072 Score=59.12 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAK-LSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.=.++..++... .....++.|+++||+++++...+.+.+.+|.++....++ ++.++|||+.|+.-.|
T Consensus 381 ~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 381 ATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 33444444444433333333221 112347889999999999999999999999999766655 5779999999987655
No 96
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.65 E-value=0.096 Score=57.33 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 413 LCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 413 ~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
+++-+++.+.-.++..++.... ....++.|.++||+++++.+.+.+.+.+|.++.... .++.++||++.|+.-.|.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 4444444444444444433221 123478899999999999999999999999986543 378899999998875553
No 97
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.10 E-value=0.16 Score=51.81 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCC-CCCCCCChhHHHhHHHHH
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD-PNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~-v~~~~~p~~aVA~GAal~ 483 (593)
.+++-..+.+.+.|++.....+....+ -.++.+||.+ |.+...+.+.+|.+ +..+..+.-+.|.||++-
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEE-E--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 344445555566666654444433222 1255566665 78888999999875 444555788899999853
No 98
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.00 E-value=0.13 Score=48.66 Aligned_cols=31 Identities=35% Similarity=0.309 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHH
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLA 288 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~ 288 (593)
....+.+.++++.+|++...++.+|.|++.+
T Consensus 156 ~~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 156 KSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred hHHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 4578889999999999999999999998754
No 99
>PRK09604 UGMP family protein; Validated
Probab=93.54 E-value=2.5 Score=43.96 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhHHHHHhhhhcC
Q 047555 421 LKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~GAal~a~~l~~ 489 (593)
+.+.++.+++. ..++.|+|+||.++..++++.|.+.+ +.++..+. --|.++++|++=+-....|
T Consensus 242 l~~~~~~~~~~-----~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 242 LVIKTKRALKQ-----TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred HHHHHHHHHHH-----hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 33444444443 34678999999999999999999988 44444333 3467888888744333333
No 100
>PRK13321 pantothenate kinase; Reviewed
Probab=93.29 E-value=4.3 Score=40.49 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEECC
Q 047555 114 VVGIDLGTTNSAVAAMEGG 132 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g 132 (593)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999865
No 101
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.18 E-value=0.27 Score=51.61 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=46.4
Q ss_pred HcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 431 DAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 431 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
..+........|+.|||.|+...|-+.|.+.||.++... +-.++.+.|+|++|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 344455567899999999999999999999999988765 6777889999999764
No 102
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.41 E-value=0.39 Score=53.05 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=38.3
Q ss_pred CCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 437 NDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
..++.|+++||+++++...+++.+.+|.++......+.+.+-||++.+..
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~ 449 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAA 449 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHH
Confidence 44678999999999999999999999999885555555555555544443
No 103
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=92.29 E-value=0.037 Score=48.39 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC---CceEE---------Eechh-HHHHHH
Q 047555 224 EISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAG---LEVLR---------IINEP-TAASLA 288 (593)
Q Consensus 224 ~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AG---l~~v~---------li~Ep-~AAal~ 288 (593)
+-++..|+..++.+++..+.++.++.+++ .....+.+.++++..+ ++.-. ++.+| .|+|++
T Consensus 46 ~~i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 46 EDISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 34455555556666665555555555555 5556666777777776 66656 67788 787765
No 104
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=92.11 E-value=0.34 Score=49.20 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCceEEEechhHHHHHHhcc--ccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHH
Q 047555 261 RTATKDAGRIAGLEVLRIINEPTAASLAYGF--ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338 (593)
Q Consensus 261 r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~--~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id 338 (593)
...+.++-+..|++.-.+-.|-+|...+.+. ........+|+|+|||+|.+++++-+... ...+.++|.-.+.
T Consensus 74 ~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vrl~ 148 (285)
T PF02541_consen 74 DEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV-----FSQSLPLGAVRLT 148 (285)
T ss_dssp HHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE-----EEEEES--HHHHH
T ss_pred HHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee-----EeeeeehHHHHHH
Confidence 3445556667799885555555554333222 12246788999999999999988744322 1334678888877
Q ss_pred HHH
Q 047555 339 KRV 341 (593)
Q Consensus 339 ~~l 341 (593)
+.+
T Consensus 149 e~~ 151 (285)
T PF02541_consen 149 ERF 151 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 105
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=91.96 E-value=2.7 Score=41.76 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=37.2
Q ss_pred CCCCCeEEEEeCCCChHhHHHHHHhHhC--CC--CCCCCCChhHHHhHHHHH
Q 047555 436 FNDLDEVILVGGSTRIPAVQELVKKMTG--KD--PNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 436 ~~~i~~VvLvGG~s~~p~l~~~l~~~~g--~~--v~~~~~p~~aVA~GAal~ 483 (593)
...+|.|+|+||.++...+-++|.+... .+ +.-..+-.+|.|.|+..-
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lRV 345 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALRV 345 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHHH
Confidence 3579999999999999999999998874 22 333456678999998643
No 106
>PRK09557 fructokinase; Reviewed
Probab=91.56 E-value=18 Score=36.94 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=27.3
Q ss_pred cCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEE
Q 047555 271 AGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVL 314 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~ 314 (593)
.|++ +.+.++..|+|++-... .+..++++.+.+|.| +-..++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEE
Confidence 4775 67999999999876442 223467777778754 344444
No 107
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=91.34 E-value=8.6 Score=38.09 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHH
Q 047555 407 RAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELV 458 (593)
Q Consensus 407 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l 458 (593)
++..+.+...++.....+|+..+++.+.....-..++++||.++ .+.+.+
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~--~~~~~~ 230 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK--LLLDEL 230 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH--hhhhhc
Confidence 45567777777777777777777765533223467999999864 444443
No 108
>PRK13318 pantothenate kinase; Reviewed
Probab=91.04 E-value=11 Score=37.65 Aligned_cols=19 Identities=42% Similarity=0.800 Sum_probs=17.0
Q ss_pred EEEEEcCccceEEEEEECC
Q 047555 114 VVGIDLGTTNSAVAAMEGG 132 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g 132 (593)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 6899999999999998754
No 109
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.95 E-value=1.7 Score=44.80 Aligned_cols=70 Identities=27% Similarity=0.406 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC----CCCCCCCC----hhHHHhHHHHHhhh
Q 047555 415 SDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK----DPNVTVNP----DEVVALGAAVQGGV 486 (593)
Q Consensus 415 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~----~v~~~~~p----~~aVA~GAal~a~~ 486 (593)
+..++.+.+.|...+.. ..+++.|+|+|-.++++-+.+.+++.|+. ++. ...+ ....|.|||+.|.-
T Consensus 241 ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 241 EAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhh
Confidence 33444444444444333 24578899999999999998888887732 222 2222 13379999999987
Q ss_pred hcC
Q 047555 487 LAG 489 (593)
Q Consensus 487 l~~ 489 (593)
+.|
T Consensus 316 laG 318 (343)
T PF07318_consen 316 LAG 318 (343)
T ss_pred hhc
Confidence 766
No 110
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=90.82 E-value=3 Score=40.88 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCCcCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCce
Q 047555 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDS-QRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGT 308 (593)
Q Consensus 230 L~~l~~~a~~~l~~~~~~~viTVPa~~~~~-~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT 308 (593)
.+.+++.++...+.++ .++++-..|... .....++.+. |+. .|.|- .......++.++||+|..|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aNW---------~Ata~--~~~e~~~dsci~VD~GSTT 141 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-ANW---------VATAR--FLAEEIKDSCILVDMGSTT 141 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hhh---------HHHHH--HHHHhcCCceEEEecCCcc
Confidence 4556777777666654 688888877653 2222333211 111 01111 1112335778999999999
Q ss_pred EEEEEEEEc
Q 047555 309 FDVSVLEVG 317 (593)
Q Consensus 309 ~Dvsv~~~~ 317 (593)
+|+.-+..+
T Consensus 142 tDIIPi~~g 150 (330)
T COG1548 142 TDIIPIKDG 150 (330)
T ss_pred cceEeecch
Confidence 999877654
No 111
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.81 E-value=2.2 Score=46.56 Aligned_cols=93 Identities=18% Similarity=0.119 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCC---CHHHHHHHHHHHHHcCCceEEEechhHHHHHHhcc--ccCCCce
Q 047555 224 EISAQVLRKLVDDASKFLNDKITKAVVTVPAYF---NDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF--ERKNNET 298 (593)
Q Consensus 224 ~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~---~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~--~~~~~~~ 298 (593)
+.+...+..|+..++...+....++ ..|=... -...-+.+..+-+..|++.-.+--|-+|-..+.+. .......
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~ 130 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGD 130 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCC
Confidence 3444444444444444334444442 2222111 12345667777888899886666666665444433 2233678
Q ss_pred EEEEeeCCceEEEEEEEEc
Q 047555 299 ILVFDLGGGTFDVSVLEVG 317 (593)
Q Consensus 299 vlVvD~GggT~Dvsv~~~~ 317 (593)
.+|+|+|||+|.+++....
T Consensus 131 ~lv~DIGGGStEl~~g~~~ 149 (492)
T COG0248 131 GLVIDIGGGSTELVLGDNF 149 (492)
T ss_pred EEEEEecCCeEEEEEecCC
Confidence 9999999999999988743
No 112
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=90.01 E-value=6 Score=41.63 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=54.6
Q ss_pred EEecHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCe-EEEEeCCCChHhHHHHHHhHhCC-CCCCCC-CChhHHHh
Q 047555 403 TTLTRAKFEELCSDLLDRL-KKPVETALRDAKLSFNDLDE-VILVGGSTRIPAVQELVKKMTGK-DPNVTV-NPDEVVAL 478 (593)
Q Consensus 403 ~~itr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~~~~i~~-VvLvGG~s~~p~l~~~l~~~~g~-~v~~~~-~p~~aVA~ 478 (593)
..-.+.++...++..++++ ...++.++++.+ ++. ++|.||.+..-.+-..|.+..+. ++.+.+ --|..+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 3456777877777777665 466666777665 445 99999999888888888877543 344333 44778999
Q ss_pred HHHHHhhhhcC
Q 047555 479 GAAVQGGVLAG 489 (593)
Q Consensus 479 GAal~a~~l~~ 489 (593)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999886443
No 113
>PLN02666 5-oxoprolinase
Probab=89.89 E-value=7.5 Score=47.52 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=47.2
Q ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCC-CCCCCCChhHHHhHHHH
Q 047555 405 LTRAKFEELCSDLL-DRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD-PNVTVNPDEVVALGAAV 482 (593)
Q Consensus 405 itr~~~e~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~-v~~~~~p~~aVA~GAal 482 (593)
++-++..+-+..+. ..+.+.|+......+.+..+ -.++..||. =|...-.|.+.+|.+ +..+.+|....|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 44455544444433 34455666665555544322 224444444 488999999999987 77788999889999875
No 114
>PRK00292 glk glucokinase; Provisional
Probab=89.85 E-value=26 Score=36.02 Aligned_cols=47 Identities=32% Similarity=0.342 Sum_probs=30.8
Q ss_pred HHHHcCCceEEEechhHHHHHHhcc---------ccCC---CceEEEEeeCCceEEEEEE
Q 047555 267 AGRIAGLEVLRIINEPTAASLAYGF---------ERKN---NETILVFDLGGGTFDVSVL 314 (593)
Q Consensus 267 Aa~~AGl~~v~li~Ep~AAal~~~~---------~~~~---~~~vlVvD~GggT~Dvsv~ 314 (593)
..+..|++.+.+.|+-.|+|++-.. ...+ ...++++-+|-| +-.+++
T Consensus 86 l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 86 MKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 3344588778999999999998543 1111 367888888766 333333
No 115
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=89.08 E-value=2 Score=43.32 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=45.7
Q ss_pred CCeEEEEeC--CCChH-hHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEe
Q 047555 439 LDEVILVGG--STRIP-AVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLD 498 (593)
Q Consensus 439 i~~VvLvGG--~s~~p-~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~ 498 (593)
...|+|.|- +.+.| .+++.|++.+..++..... +..|.|+|+.|.-+.+..++++-++
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~--ksAA~G~AiIA~dI~gGk~~iLGi~ 323 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS--ESAAIGLALIAEDIFSGKREILGID 323 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc--hhhhhhHHHHHHHHhCCcceEeeee
Confidence 347999997 88999 9999999999866553333 7889999999998877666665443
No 116
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=88.55 E-value=25 Score=36.28 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhHHH
Q 047555 421 LKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALGAA 481 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~GAa 481 (593)
+.+.++..++. ..++.|+|.||.++..++.+.|.+.+ +.++..+. --|.++++|++
T Consensus 247 l~~~~~~~~~~-----~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKK-----TGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHH-----hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 33444444443 24678999999999999999999988 44444333 23667777765
No 117
>PRK14878 UGMP family protein; Provisional
Probab=85.88 E-value=27 Score=36.14 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=25.8
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMT---GKDPNVT 469 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~ 469 (593)
.+..|+|+||-++..++++.+.+.+ +.++..+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~ 275 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVV 275 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECC
Confidence 3678999999999999999999977 5444433
No 118
>PRK00976 hypothetical protein; Provisional
Probab=85.64 E-value=5.6 Score=40.85 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=43.9
Q ss_pred CCCeEEEEeCCCChH--hHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEe
Q 047555 438 DLDEVILVGGSTRIP--AVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLD 498 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p--~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~ 498 (593)
+++.|+|-||-++.+ .+.+.+++++... ...-..++-++|||+.|..+.+..++++-++
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G~~~ilgi~ 323 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNGKKDILGIE 323 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCCCceeeeeE
Confidence 478899999999987 7888998888543 2333447899999999987766556655443
No 119
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=85.16 E-value=2.7 Score=44.14 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC-CCC------CCCCChhHHHhHHHHHh
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK-DPN------VTVNPDEVVALGAAVQG 484 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-~v~------~~~~p~~aVA~GAal~a 484 (593)
+++.-+.+=+.+.|.+.+++.. .+++.|+++||+.+.+.|.+.|++.++. ++. ...+..||++ -|++|
T Consensus 261 D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~a--FA~La 335 (364)
T PF03702_consen 261 DILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMA--FAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHH--HHHHH
Confidence 3344444444455555555543 2277899999999999999999999964 332 2234445544 45555
Q ss_pred hh
Q 047555 485 GV 486 (593)
Q Consensus 485 ~~ 486 (593)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 120
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=85.12 E-value=49 Score=36.86 Aligned_cols=51 Identities=29% Similarity=0.250 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhHHHHHhhhhc
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~GAal~a~~l~ 488 (593)
.++.|+|+||-++..++++.|.+.+ +.++..+. --|.+++.|++.+.....
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3677999999999999999999665 44444443 346788888876544333
No 121
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=84.87 E-value=31 Score=35.34 Aligned_cols=38 Identities=26% Similarity=0.500 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh
Q 047555 420 RLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT 462 (593)
Q Consensus 420 ~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~ 462 (593)
-+.+.+++.++.. .++.|+|+||-++...+++.|.+.+
T Consensus 245 ~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 245 HLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3444445555442 4678999999999999999999887
No 122
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=83.61 E-value=54 Score=33.29 Aligned_cols=184 Identities=16% Similarity=0.152 Sum_probs=90.4
Q ss_pred eEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEE---ecCCCCccHHHHHHHHHHHHHHHhhh
Q 047555 275 VLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLS---TSGDTHLGGDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 275 ~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~---~~~~~~lGG~~id~~l~~~l~~~~~~ 351 (593)
.+.+.+....|......+ ++. +|+=.|-|+.-+.. .++...... ..-+...+|..|=+.+.+++...+..
T Consensus 99 ~v~v~~Dg~iAl~ga~~~---~~G-ii~i~GTGSi~~~~---~gg~~~r~GG~Gf~IgDegSga~ig~~~L~~~lra~DG 171 (301)
T COG2971 99 KVDVENDGLIALRGALGD---DDG-IIVIAGTGSIGYGR---KGGRRERVGGWGFPIGDEGSGAWIGREALQEALRAFDG 171 (301)
T ss_pred eEEEecChHHHHhhccCC---CCC-EEEEecCCeEEEEE---eCCeeEEecCcCccccccchHHHHHHHHHHHHHHHhcC
Confidence 777888877776655433 222 44446777766554 222221111 12234667888888888877766553
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHH------HHHHHHHHHHHHHH
Q 047555 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE------ELCSDLLDRLKKPV 425 (593)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e------~~~~~~~~~i~~~i 425 (593)
..... -.++.+...|..+....+. +.+...-..+.+ -.+...-|+ .+--.++++....|
T Consensus 172 ~~~~t------------~L~d~v~~~f~~d~edlv~--~~y~a~~~~~~i-a~lap~V~~~A~~GD~~A~~Il~~aa~~i 236 (301)
T COG2971 172 RREAT------------PLTDAVMAEFNLDPEDLVA--FIYKAGPGDKKI-AALAPAVFEAARKGDPVAIRILKEAAAYI 236 (301)
T ss_pred CccCC------------hHHHHHHHHhCCCHHHHHH--HHHhcCCchHHH-HHhhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32111 0112222222221110000 000000000000 011111111 12224556666666
Q ss_pred HHHHHHcCCCCCCCCeEEEEeCCCCh-HhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhh
Q 047555 426 ETALRDAKLSFNDLDEVILVGGSTRI-PAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 426 ~~~l~~~~~~~~~i~~VvLvGG~s~~-p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
...++..... .....+.|.||..+. +++.+..++..-.++ ..-+..||.+.|...
T Consensus 237 ~~~~~~l~~~-~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~~ 292 (301)
T COG2971 237 ATLLEALSIF-NGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHhcc-cCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHHh
Confidence 6666665322 335679999999776 777777777763332 555688888887543
No 123
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=83.14 E-value=3.9 Score=43.73 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLS-FNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
+.+++..++.+.=...++++..... ...+..+-+=||.++..++.+...+.+|.+|.++.+. |..|.|||+.|..-.|
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~-EtTAlGaA~lAGla~G 452 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVVL-ETTALGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeeccccc-hhhHHHHHHHHhhhhC
Confidence 4445555555554444444432211 1257889999999999999999999999988866554 5789999999987655
No 124
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=82.71 E-value=23 Score=40.46 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.5
Q ss_pred ccCCCeEEEEEcCccceEEEEEE
Q 047555 108 RVVNEKVVGIDLGTTNSAVAAME 130 (593)
Q Consensus 108 ~~~~~~vVGIDfGTt~s~va~~~ 130 (593)
....+.++|||+|.|++++++.+
T Consensus 14 ~~~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 14 QHADGPRLLADVGGTNARFALET 36 (638)
T ss_pred cCCCCCEEEEEcCchhheeeeec
Confidence 44567799999999999999874
No 125
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=82.07 E-value=69 Score=33.43 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=57.9
Q ss_pred eHHHHHHHHHHHHHHHHHHHh---C---CCcCcEEEEe-CCCCCHHHHHHH---HHHHHHcCCceEEEechhHHHHHHhc
Q 047555 221 AAEEISAQVLRKLVDDASKFL---N---DKITKAVVTV-PAYFNDSQRTAT---KDAGRIAGLEVLRIINEPTAASLAYG 290 (593)
Q Consensus 221 ~~~~l~~~~L~~l~~~a~~~l---~---~~~~~~viTV-Pa~~~~~~r~~l---~~Aa~~AGl~~v~li~Ep~AAal~~~ 290 (593)
-|++......+.|....++.+ + ..++.+.+|. |..|.. -|--+ +..+...|++. .-++.-+|=+++..
T Consensus 41 vP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~-LrVG~~~Ak~LA~a~~~Pl-igV~HlegHi~a~~ 118 (345)
T PTZ00340 41 LPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAP-LSVGAVVARTLSLLWGKPL-VGVNHCVAHIEMGR 118 (345)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhh-HHHHHHHHHHHHHHcCCCE-eecchHHHHHHHHh
Confidence 344444444444433333322 2 2345566665 443332 22222 33344455554 34455555444333
Q ss_pred cccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHH
Q 047555 291 FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 339 (593)
Q Consensus 291 ~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~ 339 (593)
+....... |++=+-||+|.+.. ...+.+++++...|...| +.||+
T Consensus 119 l~~~~~~P-l~LlVSGGhT~l~~--~~~~~~~ilG~T~Dda~G-ea~DK 163 (345)
T PTZ00340 119 LVTGAENP-VVLYVSGGNTQVIA--YSEHRYRIFGETIDIAVG-NCLDR 163 (345)
T ss_pred hccCCCCC-eEEEEeCCceEEEE--ecCCeEEEEEeecccchh-HHHHH
Confidence 32221122 66777888888776 445678999988876554 66664
No 126
>PRK03011 butyrate kinase; Provisional
Probab=81.63 E-value=5.6 Score=41.78 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhC----CCCCCCCCChhHHHhHHHHH
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTG----KDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g----~~v~~~~~p~~aVA~GAal~ 483 (593)
+++.|+|.||.+..+.+.+.|++.+. ..+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999999999988774 23344456668999998765
No 127
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=81.34 E-value=70 Score=33.02 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhH
Q 047555 439 LDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALG 479 (593)
Q Consensus 439 i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~G 479 (593)
++.|+|+||-++..++.+.|.+.+ +.++..+. --|.++++|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 677999999999999999999965 44444322 235566666
No 128
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=80.59 E-value=97 Score=34.14 Aligned_cols=212 Identities=20% Similarity=0.184 Sum_probs=102.8
Q ss_pred cCCc-eEEEechhHH-HHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCC-ccHHHHHHHHHHHHHH
Q 047555 271 AGLE-VLRIINEPTA-ASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTH-LGGDDFDKRVVDWLAE 347 (593)
Q Consensus 271 AGl~-~v~li~Ep~A-Aal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~-lGG~~id~~l~~~l~~ 347 (593)
.+++ .+.++..-.| |+-+|....-++.-++++|-.|--...++....++.+..+....... +| .... .|.+++--
T Consensus 110 ~~~~~kv~~~eHH~aHAasAf~~SpF~~a~vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG-~fY~-~~T~~lGf 187 (555)
T COG2192 110 KGLPVKVLFVEHHLAHAASAFFTSPFEEALVLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLG-LFYA-AFTELLGF 187 (555)
T ss_pred ccCccceeechHHHHHHHHHhcCCCcccceEEEEeccCCceEEEEEeccCCeeEEEEeecCcchHH-HHHH-HHHHHhCC
Confidence 4554 4556655555 33444443334578899998887676777766677777776654443 33 2222 33333221
Q ss_pred HhhhhhCC----CCcCCHHHHHHHHHHHHHHhhhcCCC-c------eeeE-EeccccccCCCCceeEEEecHHHHHHHHH
Q 047555 348 NFKRDEGV----VLLNDKQALQRLTEAAEKAKMELSSL-T------QANI-SLPFITATADGPKHIETTLTRAKFEELCS 415 (593)
Q Consensus 348 ~~~~~~~~----~~~~~~~~~~~L~~~~e~~K~~Ls~~-~------~~~i-~i~~~~~~~~~~~~~~~~itr~~~e~~~~ 415 (593)
+-....+. ..-.++.....+....++ |...... . ...+ .................+....++...++
T Consensus 188 ~~n~~EgKvMgLAaYG~p~y~~~~~d~l~~-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diAasaQ 266 (555)
T COG2192 188 KPNSDEGKVMGLAAYGDPNYDLSLLDLLRE-KEDGLFVINGELLKRLARLGTFSLLGALKRRLPESPSTERAADIAASAQ 266 (555)
T ss_pred CCCCCCccEEEeeccCCcccchHHHHHHhh-ccccceeccHHHHHhccccceeccccccccccccccccccHHHHHHHHH
Confidence 11111110 001112111122222222 1100000 0 0000 00000000010011223444556666677
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHH-HHHHhHhCCCCCCCCC-ChhHHHhHHHHHhhhhcC
Q 047555 416 DLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQ-ELVKKMTGKDPNVTVN-PDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 416 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~-~~l~~~~g~~v~~~~~-p~~aVA~GAal~a~~l~~ 489 (593)
..++++...+-..+.+.. ....+.+.||.+..-..- +.+++.+..++.+.+. -|.-.|.|||+++....+
T Consensus 267 ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~~~~ 338 (555)
T COG2192 267 AYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKRELG 338 (555)
T ss_pred HHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHHHHHHhc
Confidence 777776655555554432 146799999998765555 6677766666655443 456689999999876543
No 129
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=80.44 E-value=50 Score=35.19 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCC--ceEEEechhHHHHHHhc
Q 047555 258 DSQRTATKDAGRIAGL--EVLRIINEPTAASLAYG 290 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl--~~v~li~Ep~AAal~~~ 290 (593)
..-.+.+.++.+.-++ .++.+++..+++.++-.
T Consensus 181 ~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~ 215 (466)
T COG5026 181 TDVVRLLQEALSARNLPIRVVAVINDTTGTLLASV 215 (466)
T ss_pred hhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHh
Confidence 4556777888777776 67889999999888643
No 130
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=80.15 E-value=74 Score=32.52 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=50.4
Q ss_pred eHHHHHHHHHHHHHHHHHHH--hCCCcCcEEEEeCCCCCHH------------HHHHHHHHH-HHcCCceEEEechhHHH
Q 047555 221 AAEEISAQVLRKLVDDASKF--LNDKITKAVVTVPAYFNDS------------QRTATKDAG-RIAGLEVLRIINEPTAA 285 (593)
Q Consensus 221 ~~~~l~~~~L~~l~~~a~~~--l~~~~~~~viTVPa~~~~~------------~r~~l~~Aa-~~AGl~~v~li~Ep~AA 285 (593)
++++++..+.+.+.+...+. ...++..+.|++|...+.. +...+.+.. +..|++ +.+.++..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 44554444444443333221 1123455778888644321 111233333 344765 6799999999
Q ss_pred HHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 286 SLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 286 al~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
|++-... ....++++++.+|.|- -.+++.
T Consensus 111 alaE~~~g~~~~~~~~~~v~igtGi-G~giv~ 141 (318)
T TIGR00744 111 ALGEYKKGAGKGARDVICITLGTGL-GGGIII 141 (318)
T ss_pred HHHHHHhcccCCCCcEEEEEeCCcc-EEEEEE
Confidence 8865432 2235778888888775 555543
No 131
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=76.71 E-value=25 Score=34.73 Aligned_cols=95 Identities=18% Similarity=0.314 Sum_probs=57.8
Q ss_pred CCCcCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccC--CCceEEEEeeCCceEEEEEEEEc
Q 047555 242 NDKITKAVV--TVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERK--NNETILVFDLGGGTFDVSVLEVG 317 (593)
Q Consensus 242 ~~~~~~~vi--TVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~--~~~~vlVvD~GggT~Dvsv~~~~ 317 (593)
+..+..++. .+|.+|+ --+++++.+...|.+. .+.+--.||.+..+.+.. ....++++|+|-|.|=..+++ +
T Consensus 111 g~~~~~~~y~~~~P~~~T--Rm~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~-~ 186 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFT--RMRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK-D 186 (254)
T ss_pred CCCHHHeeecCCCcHHHH--HHHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe-C
Confidence 334456777 7787754 2334555555556666 666777777777777644 367899999999999888883 3
Q ss_pred CCEEEEEEecCCCCccHHHHHHHH
Q 047555 318 DGVFEVLSTSGDTHLGGDDFDKRV 341 (593)
Q Consensus 318 ~~~~~vl~~~~~~~lGG~~id~~l 341 (593)
+.++-+....+ ..+-...+...+
T Consensus 187 ~rI~GvfEHHT-~~l~~~kL~~~l 209 (254)
T PF08735_consen 187 GRIYGVFEHHT-GMLTPEKLEEYL 209 (254)
T ss_pred CEEEEEEeccc-CCCCHHHHHHHH
Confidence 22333333333 445444444433
No 132
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=73.97 E-value=1.2e+02 Score=31.57 Aligned_cols=222 Identities=18% Similarity=0.185 Sum_probs=107.0
Q ss_pred eeeHHHHHHHHHHHHHHHHHHHh---CC---CcCcEEEEeCCCCCHHHHHHH---HHHHHHcCCceEEEechhHHHHHHh
Q 047555 219 QFAAEEISAQVLRKLVDDASKFL---ND---KITKAVVTVPAYFNDSQRTAT---KDAGRIAGLEVLRIINEPTAASLAY 289 (593)
Q Consensus 219 ~~~~~~l~~~~L~~l~~~a~~~l---~~---~~~~~viTVPa~~~~~~r~~l---~~Aa~~AGl~~v~li~Ep~AAal~~ 289 (593)
.+-||...+...+.+....++.+ +. .++-+.+|.=......-+--. +..+-..+. .+.-|+.-++=.++.
T Consensus 40 GVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~k-Pli~VnH~~gHi~a~ 118 (342)
T COG0533 40 GVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNK-PLIPVNHLEGHIEAA 118 (342)
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCC-CEeecchHHHHHHHH
Confidence 35677777777776655444433 33 344466665445544333222 122222333 344566666655544
Q ss_pred ccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHH
Q 047555 290 GFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTE 369 (593)
Q Consensus 290 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 369 (593)
....+.....+.+=+-||.|.+..++- -+.|++++..-|..+| +.||+- .++ .+......+ .+.+
T Consensus 119 ~l~~~~~~p~v~LlVSGGHTqli~~~~-~g~y~ilGeTlDdA~G-ea~DKv-AR~--------lGL~yPGGp----~Ie~ 183 (342)
T COG0533 119 RLETGLAFPPVALLVSGGHTQLIAVRG-IGRYEVLGETLDDAAG-EAFDKV-ARL--------LGLGYPGGP----AIEK 183 (342)
T ss_pred HhccCCCCCcEEEEEecCceEEEEEcC-CCcEEEEeeechhhhh-HHHHHH-HHH--------hCCCCCCcH----HHHH
Confidence 443331333444445667777655552 1568999888776654 666642 222 122222222 1122
Q ss_pred HHHHHhh---hcCCC--ce--eeEEecccc-----ccCCCCceeEEEecHHHHHHHHHH----HHHHHHHHHHHHHHHcC
Q 047555 370 AAEKAKM---ELSSL--TQ--ANISLPFIT-----ATADGPKHIETTLTRAKFEELCSD----LLDRLKKPVETALRDAK 433 (593)
Q Consensus 370 ~~e~~K~---~Ls~~--~~--~~i~i~~~~-----~~~~~~~~~~~~itr~~~e~~~~~----~~~~i~~~i~~~l~~~~ 433 (593)
.|++-.. .|... .. .+++...+. ........ -.+..++.++++.. .++-+.+..+++++..+
T Consensus 184 lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~--~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~ 261 (342)
T COG0533 184 LAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQK--EELNEEDKEDIAASFQEAVFDMLVEKTERALKHTG 261 (342)
T ss_pred HHhcCCCCceeCCccccCCCCcceehHhHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2222211 01000 00 000000000 00000000 11223333444433 45555666666676654
Q ss_pred CCCCCCCeEEEEeCCCChHhHHHHHHhHhC
Q 047555 434 LSFNDLDEVILVGGSTRIPAVQELVKKMTG 463 (593)
Q Consensus 434 ~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g 463 (593)
.+.++++||-+....||+++++.+.
T Consensus 262 -----~~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 262 -----KKELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred -----CCEEEEeccHHHhHHHHHHHHHHHH
Confidence 5679999999999999999999773
No 133
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=73.95 E-value=3.6 Score=40.56 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=17.0
Q ss_pred eEEEEEcCccceEEEEEEC
Q 047555 113 KVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~ 131 (593)
+++|||+|||++++++++.
T Consensus 1 y~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred CEEEEEEcccceEEEEEeC
Confidence 4799999999999999873
No 134
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=73.51 E-value=17 Score=38.19 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCC----CCCChhHHHhHHHHHhhh
Q 047555 421 LKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV----TVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~----~~~p~~aVA~GAal~a~~ 486 (593)
+...|.+.+.... ...+.|+++||+++.+.|.++|++.++.++.. ..+++.-=|..-|++|..
T Consensus 272 TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 272 TAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3344444444332 22468999999999999999999998633332 134443334445666543
No 135
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=73.03 E-value=11 Score=43.43 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=37.3
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhC---CCCCCCC---CChhHHHhHHHHHhh
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTG---KDPNVTV---NPDEVVALGAAVQGG 485 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g---~~v~~~~---~p~~aVA~GAal~a~ 485 (593)
.++.|+|+||.++...|.+.|.+.++ .++..+. --|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998874 3443332 347789999988764
No 136
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=72.40 E-value=4.2 Score=36.29 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.1
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 047555 112 EKVVGIDLGTTNSAVAAMEGG 132 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g 132 (593)
+.++|||+|+..+++|+.+..
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 468999999999999998765
No 137
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=72.29 E-value=7.5 Score=40.83 Aligned_cols=156 Identities=18% Similarity=0.249 Sum_probs=78.9
Q ss_pred CCCeEEEEEcCccceEEEEEEC--C---eeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhC
Q 047555 110 VNEKVVGIDLGTTNSAVAAMEG--G---KPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIG 184 (593)
Q Consensus 110 ~~~~vVGIDfGTt~s~va~~~~--g---~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg 184 (593)
...+.+-||=|+|-|+|=++.= . .+-.+..+.=+..-|-.-+|.+ +|+.....++.+|.
T Consensus 65 ~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfad----------------dp~~aA~Sl~~LLd 128 (453)
T KOG1385|consen 65 KRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFAD----------------DPEEAANSLRPLLD 128 (453)
T ss_pred ceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCC----------------ChHHHHHhHHHHHH
Confidence 3678999999999999987732 1 1111111000111233333432 34444455666666
Q ss_pred CCCchhhhh-hccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 185 RKMSEVDDE-SKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 185 ~~~~~~~~~-~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
.....+-.+ -++.| +.++.. .|-+..+.+-...+|+.++++.+..-.-.+..-.++|
T Consensus 129 ~A~~~vP~~~~~kTP----------i~lkAT-AGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsI----------- 186 (453)
T KOG1385|consen 129 VAEAFVPREHWKKTP----------IVLKAT-AGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSI----------- 186 (453)
T ss_pred HHHhhCCHhHhccCc----------eEEEee-cccccCChhHHHHHHHHHHHHHhccCCccccCCceee-----------
Confidence 554322211 11222 222211 2555677888888888888876632221111111111
Q ss_pred HHHHHHHcCCceEEEechhHHHHH--Hhccc---cCCCceEEEEeeCCceEEEEEEE
Q 047555 264 TKDAGRIAGLEVLRIINEPTAASL--AYGFE---RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 264 l~~Aa~~AGl~~v~li~Ep~AAal--~~~~~---~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
+.=.+|..-|.+ .|+.. ......+.|+|+|||+|.++..-
T Consensus 187 ------------m~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 187 ------------MDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ------------ccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 111233333322 22222 12267899999999999998765
No 138
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.53 E-value=5 Score=45.66 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=29.9
Q ss_pred eEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEEEc
Q 047555 275 VLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLEVG 317 (593)
Q Consensus 275 ~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~~~ 317 (593)
...+.+=|.|..+++.+- ...+ +++++|+||.|||++++.-+
T Consensus 255 v~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~~G 298 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALIIDG 298 (674)
T ss_pred eeeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeeecC
Confidence 344667777766655443 2223 69999999999999998844
No 139
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=70.91 E-value=16 Score=35.16 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCCc---eEEEechhHHHHHHhcc
Q 047555 258 DSQRTATKDAGRIAGLE---VLRIINEPTAASLAYGF 291 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~---~v~li~Ep~AAal~~~~ 291 (593)
..-.+.+.+|.++.|+. ++.++|..+|..++..+
T Consensus 168 ~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 168 KDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp SBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred CccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 44578888998888875 67899999999887654
No 140
>PLN02914 hexokinase
Probab=70.26 E-value=52 Score=36.05 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=40.6
Q ss_pred eCCCCCHHHHHHHHHHHHHcCC--ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEE
Q 047555 252 VPAYFNDSQRTATKDAGRIAGL--EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 252 VPa~~~~~~r~~l~~Aa~~AGl--~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
++..-...-.+.|.+|.++-|+ +++.++|..++..++..+... +..+=+=+|-||=-+.+-+
T Consensus 199 ~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~--~~~iGlIlGTGtNacY~E~ 262 (490)
T PLN02914 199 VSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD--DVMVAVILGTGTNACYVER 262 (490)
T ss_pred cCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC--CceEEEEEECCeeeEEEee
Confidence 3333345678889999888776 678899999999887766533 2334444566654444433
No 141
>PLN02362 hexokinase
Probab=69.98 E-value=61 Score=35.74 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHcCC--ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEE
Q 047555 257 NDSQRTATKDAGRIAGL--EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDV 311 (593)
Q Consensus 257 ~~~~r~~l~~Aa~~AGl--~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dv 311 (593)
...-.+.+.+|.++-|+ +++.++|..++..++..+... +..+=+=+|-||=-+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~--~~~iG~IlGTGtNac 258 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDP--DTVAAVIIGTGTNAC 258 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCC--CceEEEEEECCccce
Confidence 45678889999988886 678899999998887665432 333334456665333
No 142
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=69.89 E-value=4.3 Score=33.57 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=16.2
Q ss_pred eEEEEEcCccceEEEEEE
Q 047555 113 KVVGIDLGTTNSAVAAME 130 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~ 130 (593)
.++|||+|.|++++|+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 489999999999999874
No 143
>PLN02405 hexokinase
Probab=69.21 E-value=65 Score=35.42 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCC--ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEE
Q 047555 257 NDSQRTATKDAGRIAGL--EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVL 314 (593)
Q Consensus 257 ~~~~r~~l~~Aa~~AGl--~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~ 314 (593)
...-.+.+++|+++-|+ +++.++|..++..++..+... +..+=+=+|-||=-+.+-
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~--~~~iG~IlGTGtNacY~E 261 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP--DVVAAVILGTGTNAAYVE 261 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC--CceEEEEEeCCeeeEEEe
Confidence 45678889999988887 568899999999887766533 344444457665444433
No 144
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=68.28 E-value=5.8 Score=43.81 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=19.6
Q ss_pred CCeEEEEEcCccceEEEEEECC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGG 132 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g 132 (593)
+..++|||+|||++++.+++.+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 6789999999999999998654
No 145
>PLN02920 pantothenate kinase 1
Probab=66.22 E-value=41 Score=35.52 Aligned_cols=49 Identities=14% Similarity=-0.018 Sum_probs=36.6
Q ss_pred CCCCeEEEEeCCCChH-hHHHHHHhH---h---CCCCCCCCCChhHHHhHHHHHhh
Q 047555 437 NDLDEVILVGGSTRIP-AVQELVKKM---T---GKDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~p-~l~~~l~~~---~---g~~v~~~~~p~~aVA~GAal~a~ 485 (593)
.+++.|+++|.+.+.+ ...+.|.-. + +.+.....+....-|+||.+...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 5688999999999988 777744332 3 34566678888999999987643
No 146
>PRK00047 glpK glycerol kinase; Provisional
Probab=64.81 E-value=6.5 Score=43.36 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.6
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 047555 112 EKVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~ 131 (593)
..++|||+|||++++++++.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH 24 (498)
T ss_pred CEEEEEecCCCceEEEEECC
Confidence 47999999999999999853
No 147
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=63.78 E-value=6.6 Score=43.56 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.3
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~ 131 (593)
|..++|||+|||++++++++.
T Consensus 2 m~~~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDL 22 (520)
T ss_pred CcEEEEEecCCCceEEEEECC
Confidence 358999999999999999854
No 148
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=63.67 E-value=6.8 Score=43.32 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.7
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 047555 112 EKVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~ 131 (593)
..++|||+|||++++++++.
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred cEEEEEecCCCceEEEEECC
Confidence 37999999999999999854
No 149
>PTZ00107 hexokinase; Provisional
Probab=63.24 E-value=80 Score=34.46 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--ceEEEechhHHHHHHhccccC--CCceEEEEeeCCceE
Q 047555 253 PAYFNDSQRTATKDAGRIAGL--EVLRIINEPTAASLAYGFERK--NNETILVFDLGGGTF 309 (593)
Q Consensus 253 Pa~~~~~~r~~l~~Aa~~AGl--~~v~li~Ep~AAal~~~~~~~--~~~~vlVvD~GggT~ 309 (593)
|..-...-.+.+++|+++-|+ +++.++|..+|..++..+... .++..+=+=+|-||=
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~N 249 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSN 249 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEecccc
Confidence 444556678889999888877 678899999999887776641 123333333565543
No 150
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=61.33 E-value=8.2 Score=34.58 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.1
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~ 131 (593)
++.++|||+|+..+++|+.+.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecC
Confidence 346999999999999998755
No 151
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=60.83 E-value=8.7 Score=34.46 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.4
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 047555 112 EKVVGIDLGTTNSAVAAMEGG 132 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g 132 (593)
+.++|||+||-.++||+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 579999999999999997654
No 152
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=60.30 E-value=29 Score=26.09 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=26.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 047555 247 KAVVTVPAYFNDSQRTATKDAGRIAGLEV 275 (593)
Q Consensus 247 ~~viTVPa~~~~~~r~~l~~Aa~~AGl~~ 275 (593)
.-.++.|+.++..+|..+.+.|+..|+..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 56789999999999999999999999965
No 153
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.09 E-value=78 Score=31.42 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=49.8
Q ss_pred HHHHHHHHH---cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHH
Q 047555 262 TATKDAGRI---AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338 (593)
Q Consensus 262 ~~l~~Aa~~---AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id 338 (593)
.+|+.|+.. ++-. ..+++.-.||+..++.+... ...+|+|+|-|.+..+++.-+ ++.-+.......+.-+.|.
T Consensus 191 tRMraaa~sal~~~t~-av~mDskfaav~gal~dpaa-~palvVd~GngHttaalvded--RI~gv~EHHT~~Lspekle 266 (342)
T COG4012 191 TRMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPAA-DPALVVDYGNGHTTAALVDED--RIVGVYEHHTIRLSPEKLE 266 (342)
T ss_pred HHHHHHHHHHHhcCce-EEEEcchhHhhhhcccCccc-CceEEEEccCCceEEEEecCC--eEEEEeecccccCCHHHHH
Confidence 345554433 3434 34555556666666666443 489999999999998887644 4443434444556666655
Q ss_pred HHHHHHHHHHh
Q 047555 339 KRVVDWLAENF 349 (593)
Q Consensus 339 ~~l~~~l~~~~ 349 (593)
..|.+++.-++
T Consensus 267 d~I~rf~~GeL 277 (342)
T COG4012 267 DQIIRFVEGEL 277 (342)
T ss_pred HHHHHHHhccc
Confidence 55555554443
No 154
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=59.32 E-value=9.6 Score=39.21 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=23.4
Q ss_pred hHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEc
Q 047555 282 PTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVG 317 (593)
Q Consensus 282 p~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~ 317 (593)
..|.|.+.... -.+++++|+||.|+|++++.-+
T Consensus 116 ~~a~A~~la~~---~~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 116 WLATAQLIAKR---IPECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred HHHHHHHHHhc---CCCEEEEEcCccceeeEEecCC
Confidence 55534433332 4559999999999999998754
No 155
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=58.94 E-value=40 Score=36.10 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCC
Q 047555 410 FEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD 465 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~ 465 (593)
++++-+-+++.+.+++.+.+.+++....+|..++++|-+...-.+...=-+.++..
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~~~ 110 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLGRA 110 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhccC
Confidence 45566677788899999999999999999999999998776655555444444433
No 156
>PTZ00288 glucokinase 1; Provisional
Probab=58.40 E-value=85 Score=33.60 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.5
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~ 131 (593)
...+||+|+|-|++++++++.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CCeEEEEEecCCceEEEEEec
Confidence 467999999999999999854
No 157
>PRK10331 L-fuculokinase; Provisional
Probab=58.20 E-value=9 Score=41.91 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=17.1
Q ss_pred eEEEEEcCccceEEEEEEC
Q 047555 113 KVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~ 131 (593)
.++|||+|||++++++++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~ 21 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDR 21 (470)
T ss_pred eEEEEecCCCceEEEEEcC
Confidence 6899999999999999853
No 158
>PLN02596 hexokinase-like
Probab=57.50 E-value=1.5e+02 Score=32.48 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHcCC--ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEE
Q 047555 257 NDSQRTATKDAGRIAGL--EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEV 316 (593)
Q Consensus 257 ~~~~r~~l~~Aa~~AGl--~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~ 316 (593)
.+.-.+.+.+|.++.|+ +++.++|..++..++..+... +..+=+=+|-||=-+.+-+.
T Consensus 204 G~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~--~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 204 GKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK--DTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC--CeEEEEEEecccceEEEEEc
Confidence 35566777888887777 678899999999887776533 33333346777544444433
No 159
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=57.46 E-value=10 Score=41.48 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=17.1
Q ss_pred eEEEEEcCccceEEEEEEC
Q 047555 113 KVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~ 131 (593)
.++|||+|||++++++++.
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 5899999999999999864
No 160
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=55.92 E-value=1.2e+02 Score=29.55 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=45.1
Q ss_pred ecHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC---CCCCCCCCChhHHHhHH
Q 047555 405 LTRAKFE-ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG---KDPNVTVNPDEVVALGA 480 (593)
Q Consensus 405 itr~~~e-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g---~~v~~~~~p~~aVA~GA 480 (593)
.+.+++- ++-+.++.-+.+.-++++...+ -+.|++|||-+..-.||+++...+. .+++ ..|-..|+-.|+
T Consensus 225 ~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~f-aTDeRfCIDNG~ 298 (336)
T KOG2708|consen 225 VTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLF-ATDERFCIDNGV 298 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceE-ecccceeeeCch
Confidence 3444442 3333455556666666776654 3469999999999999999998873 2232 344455555565
Q ss_pred HH
Q 047555 481 AV 482 (593)
Q Consensus 481 al 482 (593)
.+
T Consensus 299 MI 300 (336)
T KOG2708|consen 299 MI 300 (336)
T ss_pred HH
Confidence 43
No 161
>PRK04123 ribulokinase; Provisional
Probab=55.52 E-value=12 Score=41.96 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=17.5
Q ss_pred CeEEEEEcCccceEEEEEE
Q 047555 112 EKVVGIDLGTTNSAVAAME 130 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~ 130 (593)
..++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 4799999999999999987
No 162
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=54.51 E-value=16 Score=33.25 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=16.0
Q ss_pred eEEEEEcCccceEEEEEE
Q 047555 113 KVVGIDLGTTNSAVAAME 130 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~ 130 (593)
.|+|||.|++++++|+.+
T Consensus 1 rILGIDPGl~~~G~av~~ 18 (154)
T cd00529 1 RILGIDPGSRNTGYGVIE 18 (154)
T ss_pred CEEEEccCcCceEEEEEE
Confidence 389999999999999874
No 163
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=54.25 E-value=1.6e+02 Score=32.10 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=48.4
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCc---eEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEc
Q 047555 251 TVPAYFNDSQRTATKDAGRIAGLE---VLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVG 317 (593)
Q Consensus 251 TVPa~~~~~~r~~l~~Aa~~AGl~---~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~ 317 (593)
.++......-.+.+.++.++-|+. ++.+++..++..++..+... +.++-+=+|.||=-+.+.+.+
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~--~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP--NCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC--CcEEEEEECCCccceeeeecc
Confidence 444455567789999999999885 67899999998887766543 566667778888776666655
No 164
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=53.33 E-value=43 Score=35.08 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC--CCCCC--CCCChhHHHhHHHH
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG--KDPNV--TVNPDEVVALGAAV 482 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g--~~v~~--~~~p~~aVA~GAal 482 (593)
.+++.+...+...|-..+...+ .+++.|++.||-+..+.+.+.|.+.+. .++.. ..+-.++.|.||..
T Consensus 270 ~a~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 270 LILDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 3444444444444444444431 258899999999999988899988874 23322 23445678888864
No 165
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=52.30 E-value=1.9e+02 Score=30.31 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=37.2
Q ss_pred CCCCCeEEEEeCCCChHhHHHHHHhHh-CCCCCC----CCCChhHHHhHHHHHhhh
Q 047555 436 FNDLDEVILVGGSTRIPAVQELVKKMT-GKDPNV----TVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 436 ~~~i~~VvLvGG~s~~p~l~~~l~~~~-g~~v~~----~~~p~~aVA~GAal~a~~ 486 (593)
..+.+..+++||+.+.|.+.+.|...+ |..|.. ..+++..=|.+-|++|..
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r 343 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWR 343 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHH
Confidence 356788999999999999999999999 434432 345665556666666654
No 166
>PRK15027 xylulokinase; Provisional
Probab=52.14 E-value=12 Score=41.07 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=16.7
Q ss_pred eEEEEEcCccceEEEEEEC
Q 047555 113 KVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~ 131 (593)
.++|||+|||++++++++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE 19 (484)
T ss_pred CEEEEEecccceEEEEEcC
Confidence 3789999999999999854
No 167
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=50.73 E-value=15 Score=40.90 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=17.0
Q ss_pred eEEEEEcCccceEEEEEE
Q 047555 113 KVVGIDLGTTNSAVAAME 130 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~ 130 (593)
.++|||+|||.+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 168
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=50.48 E-value=1.2e+02 Score=31.27 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=70.0
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCC------------CCCHHHHHHHHHHHHHcCCceEEEechhHHHHHH
Q 047555 221 AAEEISAQVLRKLVDDASKFLNDKITKAVVTVPA------------YFNDSQRTATKDAGRIAGLEVLRIINEPTAASLA 288 (593)
Q Consensus 221 ~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa------------~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~ 288 (593)
+.++++..||..+.. ....+..++|+|+. .|.-. . .+..+..|++.+.++|.=+|.|++
T Consensus 37 s~~~~l~~~l~~~~~-----~~~~p~~~~iavAGPV~~~~~~lTN~~W~i~-~---~~l~~~lg~~~v~liNDfeA~a~g 107 (316)
T PF02685_consen 37 SFEDALADYLAELDA-----GGPEPDSACIAVAGPVRDGKVRLTNLPWTID-A---DELAQRLGIPRVRLINDFEAQAYG 107 (316)
T ss_dssp HHHHHHHHHHHHTCH-----HHTCEEEEEEEESS-EETTCEE-SSSCCEEE-H---HHCHCCCT-TCEEEEEHHHHHHHH
T ss_pred CHHHHHHHHHHhccc-----CCCccceEEEEEecCccCCEEEecCCCcccc-H---HHHHHHhCCceEEEEcccchheec
Confidence 567777777776511 11223457777763 23211 1 222345688999999999999987
Q ss_pred hccc------------cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEe-cCCCCccH-HHHHHHHHHHHHHHhh
Q 047555 289 YGFE------------RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLST-SGDTHLGG-DDFDKRVVDWLAENFK 350 (593)
Q Consensus 289 ~~~~------------~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~-~~~~~lGG-~~id~~l~~~l~~~~~ 350 (593)
...- ...+...+|+=.|-| +-++.+--.+..+.++.+ .|...+.- .+.+.+|.+++.+++.
T Consensus 108 l~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~~~~v~~sEgGH~~fap~~~~e~~l~~~l~~~~~ 182 (316)
T PF02685_consen 108 LPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGDGYYVLPSEGGHVDFAPRTDEEAELLRFLRRRYG 182 (316)
T ss_dssp HHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETTEEEEEEE-GGGSB---SSHHHHHHHHHHHHHCT
T ss_pred cCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCCceEeCCCccccccCCCCCHHHHHHHHHHHHhcC
Confidence 6431 123677889888866 455444444444445544 45444443 5677888899988873
No 169
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=50.31 E-value=57 Score=24.57 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 047555 237 ASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEV 275 (593)
Q Consensus 237 a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~ 275 (593)
...+.... ..-.++.|+.++..+|..+.+.|+..|+..
T Consensus 8 i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 8 IQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 33444433 356789999999999999999999999965
No 170
>PRK13331 pantothenate kinase; Reviewed
Probab=49.86 E-value=21 Score=35.44 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=22.3
Q ss_pred cccCCCeEEEEEcCccceEEEEEECCe
Q 047555 107 VRVVNEKVVGIDLGTTNSAVAAMEGGK 133 (593)
Q Consensus 107 ~~~~~~~vVGIDfGTt~s~va~~~~g~ 133 (593)
|....+.++.||.|+|+++++++++++
T Consensus 2 ~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 2 MFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 444567899999999999999998654
No 171
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=49.54 E-value=16 Score=40.33 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.0
Q ss_pred eEEEEEcCccceEEEEEEC
Q 047555 113 KVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~ 131 (593)
.++|||+|||++++++++.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred eEEEEecCCCceEEEEECC
Confidence 5899999999999999853
No 172
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=49.46 E-value=14 Score=40.75 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=16.6
Q ss_pred eEEEEEcCccceEEEEEEC
Q 047555 113 KVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~ 131 (593)
.++|||+|||++++++++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 3799999999999999854
No 173
>PLN02295 glycerol kinase
Probab=49.04 E-value=15 Score=40.73 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=16.3
Q ss_pred eEEEEEcCccceEEEEEE
Q 047555 113 KVVGIDLGTTNSAVAAME 130 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~ 130 (593)
.++|||+|||++++++++
T Consensus 1 ~vlgID~GTts~Ka~l~d 18 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYD 18 (512)
T ss_pred CEEEEecCCCceEEEEEC
Confidence 379999999999999985
No 174
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=48.73 E-value=2.2e+02 Score=29.64 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=33.6
Q ss_pred CCCCeEEEEeCCCCh-HhHHHHHH---hHhC---CCCCCCCCChhHHHhHHHHH
Q 047555 437 NDLDEVILVGGSTRI-PAVQELVK---KMTG---KDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~-p~l~~~l~---~~~g---~~v~~~~~p~~aVA~GAal~ 483 (593)
.+++.|+++|.+-+. |...+.|. +++. .+.....+...+-|.||.+.
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 347889999999764 67788887 4443 34556778899999999875
No 175
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=48.60 E-value=55 Score=24.62 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 047555 235 DDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEV 275 (593)
Q Consensus 235 ~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~ 275 (593)
+....++... ....+..|+.++..+|..+.+.|+..|+..
T Consensus 6 ~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 6 AMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred HHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 3334444433 236788999999999999999999999965
No 176
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=48.27 E-value=66 Score=32.15 Aligned_cols=53 Identities=28% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCCCeEEEEeCCCChHh----HHHHHHhHh---C--CCCCCCC--CChhHHHhHHHHHhhhhcC
Q 047555 437 NDLDEVILVGGSTRIPA----VQELVKKMT---G--KDPNVTV--NPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~p~----l~~~l~~~~---g--~~v~~~~--~p~~aVA~GAal~a~~l~~ 489 (593)
...+.|+|.|-++++|- +++.|++.| | ..+.... --.--.|.|||+.|.-++|
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 34678999999999765 455555555 2 2222211 1122358899998877766
No 177
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=47.36 E-value=17 Score=40.65 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEEC
Q 047555 114 VVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~ 131 (593)
++|||+|||++++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 689999999999999853
No 178
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=46.65 E-value=64 Score=32.55 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC-------CCCCCCCChhHHHhHHHHHh
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK-------DPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-------~v~~~~~p~~aVA~GAal~a 484 (593)
++++...+.+...+...+.- -+++.|+|-|+....+.+.+.+++.+.. ++........+.+.||+.++
T Consensus 212 ~~~~~~~~~la~~l~~l~~~-----~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 212 ALINRSAQAIARLIADLKAT-----LDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 34444444444444444443 2467888888877666666667666532 11223344677899999875
Q ss_pred h
Q 047555 485 G 485 (593)
Q Consensus 485 ~ 485 (593)
.
T Consensus 287 ~ 287 (291)
T PRK05082 287 Q 287 (291)
T ss_pred c
Confidence 4
No 179
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=45.61 E-value=3.4e+02 Score=27.52 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=18.6
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~ 131 (593)
+..++|||+|.|++.+++.+.
T Consensus 5 ~~~~lgidIggt~i~~~l~d~ 25 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDL 25 (314)
T ss_pred CcEEEEEEecCCEEEEEEECC
Confidence 678999999999999998754
No 180
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=43.38 E-value=92 Score=31.60 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHcCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
+..|++ +.+.++..|+|++-.+. .+..++++.+.+|.| +-.+++.
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~ 140 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVF 140 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEE
Confidence 334775 67999999988875432 223567888888865 3444443
No 181
>PLN02377 3-ketoacyl-CoA synthase
Probab=42.80 E-value=1e+02 Score=34.04 Aligned_cols=57 Identities=4% Similarity=0.096 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE-EeCCCChHhHHHHHHhHhCCC
Q 047555 409 KFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVIL-VGGSTRIPAVQELVKKMTGKD 465 (593)
Q Consensus 409 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~l~~~l~~~~g~~ 465 (593)
.++...++..+-+.+.++++|++++++..+|+.|++ +.+....|.+..+|.+.+|.+
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 344555555556678888999999999999999877 344446899999999999865
No 182
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=41.90 E-value=3.1e+02 Score=27.71 Aligned_cols=47 Identities=26% Similarity=0.198 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCC---------CCCCCCCChhHHHhHHHHHh
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGK---------DPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~---------~v~~~~~p~~aVA~GAal~a 484 (593)
+++.|+|-||.+..+.+.+.|++.+.. ++........+.++||+..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 467788877777666666666665521 12223345678899999775
No 183
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=41.52 E-value=75 Score=32.07 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC--CCeEEEEeCCC-ChHhHHHHHHhHhC----CCCCCCCCChhHHHhHHHHHhh
Q 047555 413 LCSDLLDRLKKPVETALRDAKLSFND--LDEVILVGGST-RIPAVQELVKKMTG----KDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 413 ~~~~~~~~i~~~i~~~l~~~~~~~~~--i~~VvLvGG~s-~~p~l~~~l~~~~g----~~v~~~~~p~~aVA~GAal~a~ 485 (593)
+|..-=+.+-..|..++.+......+ .=.|+++||-- ....+++-....+. .+-.....|.+.-|.|||++|+
T Consensus 236 ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa 315 (336)
T KOG1794|consen 236 IFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAA 315 (336)
T ss_pred HHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhh
Confidence 33333334445556666655433222 23599999974 34455554443332 2223456888889999999999
Q ss_pred hhcC
Q 047555 486 VLAG 489 (593)
Q Consensus 486 ~l~~ 489 (593)
.+..
T Consensus 316 ~~~~ 319 (336)
T KOG1794|consen 316 SLDN 319 (336)
T ss_pred hhcc
Confidence 7654
No 184
>PLN02669 xylulokinase
Probab=40.59 E-value=28 Score=39.00 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.4
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~ 131 (593)
...++|||+||+.+++++++.
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~ 27 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS 27 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC
Confidence 567999999999999998853
No 185
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=40.34 E-value=4.5e+02 Score=27.44 Aligned_cols=229 Identities=17% Similarity=0.178 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcC---cEEEEeCCCCCHHHHHHHHHHHHHcCC--ceEEEechhHHHHHHhcccc-CC
Q 047555 222 AEEISAQVLRKLVDDASKFLNDKIT---KAVVTVPAYFNDSQRTATKDAGRIAGL--EVLRIINEPTAASLAYGFER-KN 295 (593)
Q Consensus 222 ~~~l~~~~L~~l~~~a~~~l~~~~~---~~viTVPa~~~~~~r~~l~~Aa~~AGl--~~v~li~Ep~AAal~~~~~~-~~ 295 (593)
.++.-..-+..+++.+....+...+ -+.+|+=....-.-+.=++.|-..|+- +.+.-|..-+|=|+...... ..
T Consensus 78 a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v 157 (405)
T KOG2707|consen 78 AQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSV 157 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCc
Confidence 4556667777777777766554444 467777667766666666666555532 34455677778777776654 44
Q ss_pred CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHh
Q 047555 296 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAK 375 (593)
Q Consensus 296 ~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 375 (593)
.-.++.+=+-||.+-+.+.+ +-+.++.+...-+... |+.||..-. .+. ... .+......-+++|..-
T Consensus 158 ~FPFl~lLvSGGH~llvla~-~~~~~~llg~TvDiAp-Ge~lDK~ar-----~Lg----l~~--~~e~~~~~g~aie~la 224 (405)
T KOG2707|consen 158 RFPFLALLVSGGHTLLVLAN-GVGDHELLGQTVDIAP-GEALDKCAR-----RLG----LLG--HPEDARSGGKAIEHLA 224 (405)
T ss_pred CCceeeEeeeCCceEEEEec-cccceeeeecccccch-HHHHHHHHH-----Hhc----CCC--CccchhhhhhHHHHHH
Confidence 66777777788888776655 2245677776665544 466664322 111 110 0000001111111111
Q ss_pred hhcCCCceeeEEeccccc-----cCCC------------CceeEEEecHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCCC
Q 047555 376 MELSSLTQANISLPFITA-----TADG------------PKHIETTLTRAKFEE-LCSDLLDRLKKPVETALRDAKLSFN 437 (593)
Q Consensus 376 ~~Ls~~~~~~i~i~~~~~-----~~~~------------~~~~~~~itr~~~e~-~~~~~~~~i~~~i~~~l~~~~~~~~ 437 (593)
..-+..-..++.+|.... .+.+ ++.-.....+.+|.. +-...+.-+.+....+++.+.+...
T Consensus 225 ~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~ 304 (405)
T KOG2707|consen 225 NRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPK 304 (405)
T ss_pred hccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 111111111111111000 0000 000001122233322 2222344455555555555556666
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTG 463 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g 463 (593)
.+...++.||-+...+|+.+|+...+
T Consensus 305 ~~~~lV~SGGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 305 NVKQLVISGGVASNQYIRGALEKLSA 330 (405)
T ss_pred CCceEEEcCCccchHHHHHHHHHHHH
Confidence 78889999999999999999998764
No 186
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=40.03 E-value=72 Score=34.49 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHH-----cCCce------EEEechhHHHHHHhccccC-----CC-ceEEEEeeCCceEEEEEEE
Q 047555 258 DSQRTATKDAGRI-----AGLEV------LRIINEPTAASLAYGFERK-----NN-ETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 258 ~~~r~~l~~Aa~~-----AGl~~------v~li~Ep~AAal~~~~~~~-----~~-~~vlVvD~GggT~Dvsv~~ 315 (593)
+..|+.+++.+.. -|++. ..+++-|.|...+.-.-.+ .+ ..++++|+||-|||+--+.
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 4567777776432 25532 3456666666544322111 12 3599999999999986444
No 187
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=38.25 E-value=82 Score=23.39 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 047555 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEV 275 (593)
Q Consensus 233 l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~ 275 (593)
+.+..+.++... .-.++.|+ .+..+|..+.+.|...|+..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 444444444433 45678998 89999999999999999854
No 188
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=38.09 E-value=27 Score=32.25 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=17.1
Q ss_pred CeEEEEEcCccceEEEEEE
Q 047555 112 EKVVGIDLGTTNSAVAAME 130 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~ 130 (593)
+.|+|||-|++++++|+.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 5799999999999999874
No 189
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=36.35 E-value=23 Score=31.37 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.8
Q ss_pred EEEEcCccceEEEEEEC
Q 047555 115 VGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~ 131 (593)
+|||+|+..+++|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998654
No 190
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=36.28 E-value=2.7e+02 Score=29.41 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=26.8
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChH-hHHHHHHh
Q 047555 405 LTRAKFEELCSDLLDRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIP-AVQELVKK 460 (593)
Q Consensus 405 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p-~l~~~l~~ 460 (593)
++.+.++.+++.+++.....- .+.++. ......|.++||.+.+- .+...+.+
T Consensus 66 l~~~~~~~i~~~i~~~s~~~q----~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~ 120 (374)
T PRK11199 66 VPPDLIEDVLRRVMRESYSSE----NDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTL 120 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHh----HHhcccccCcccceEEEEcCCChhhHHHHHHHHH
Confidence 344555666666555443211 222222 12457799999776654 44444444
No 191
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=35.77 E-value=5e+02 Score=26.57 Aligned_cols=119 Identities=21% Similarity=0.241 Sum_probs=71.6
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCCcCcEE--EEeCC----------CCCHHHHHHHHHHHHHcCCceEEEechhHHHHHH
Q 047555 221 AAEEISAQVLRKLVDDASKFLNDKITKAV--VTVPA----------YFNDSQRTATKDAGRIAGLEVLRIINEPTAASLA 288 (593)
Q Consensus 221 ~~~~l~~~~L~~l~~~a~~~l~~~~~~~v--iTVPa----------~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~ 288 (593)
+.++.+.+||.+... ..+.+.+ ++-|. .|.-. ++.| ....|++.+.++|.-+|.|++
T Consensus 43 sle~av~~yl~~~~~-------~~~~~a~~AiAgPv~gd~v~lTN~~W~~s-~~~~---r~~Lgl~~v~liNDF~A~A~A 111 (320)
T COG0837 43 SLEEAVQDYLSEHTA-------VAPRSACFAIAGPIDGDEVRLTNHDWVFS-IARM---RAELGLDHLSLINDFAAQALA 111 (320)
T ss_pred CHHHHHHHHHHHhhc-------cCccceEEEEecCccCCEEeeecCccccc-HHHH---HHhcCCCcEEEechHHHHHhh
Confidence 688888888887611 1122333 33332 33221 2223 345699999999999999987
Q ss_pred hccc------------cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEE-ecCCCCcc-HHHHHHHHHHHHHHHhhh
Q 047555 289 YGFE------------RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLS-TSGDTHLG-GDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 289 ~~~~------------~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~-~~~~~~lG-G~~id~~l~~~l~~~~~~ 351 (593)
...- ...+...+|+--|-|-=-..++..++. +.++. ..|...++ .+..+-.+.+++.+++..
T Consensus 112 i~~l~~~dl~qigg~~~~~~a~~avlGPGTGLGVa~Lv~~~~~-w~~lp~EGGHvdf~P~~~~E~~i~~~l~~~~Gr 187 (320)
T COG0837 112 IPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGLGVAGLVPNGGG-WIPLPGEGGHVDFAPRSEREFQILEYLRARFGR 187 (320)
T ss_pred ccccCHHHHHHhcCCCCCCCCceEEEcCCCCcceEEEEecCCe-eEeccCCCccccCCCCCHHHHHHHHHHHHhcCc
Confidence 6422 122566777755544334445555554 55554 44555555 467888999999988664
No 192
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=35.53 E-value=60 Score=29.40 Aligned_cols=24 Identities=42% Similarity=0.803 Sum_probs=16.5
Q ss_pred EEEEEcCccceEEEEEE--CCeeEEE
Q 047555 114 VVGIDLGTTNSAVAAME--GGKPTIV 137 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~--~g~~~ii 137 (593)
|+|||-|+++++.|+.+ +++...+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 79999999999999873 3444443
No 193
>PRK13320 pantothenate kinase; Reviewed
Probab=35.44 E-value=43 Score=33.15 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.8
Q ss_pred CeEEEEEcCccceEEEEEECCe
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGK 133 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~ 133 (593)
+.++.||.|+|+++.+++++++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 3589999999999999988653
No 194
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=35.27 E-value=1.1e+02 Score=32.66 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCC-ChHhHHHHHHhHhC
Q 047555 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGST-RIPAVQELVKKMTG 463 (593)
Q Consensus 413 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~l~~~l~~~~g 463 (593)
+++-++.++.+.|-....... ..+|.|+++||-+ ..+.|++.|.+.++
T Consensus 301 A~d~f~yri~k~Iga~~a~L~---g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAALN---GRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 344455555555555554431 3599999999999 99999999998763
No 195
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.20 E-value=76 Score=31.47 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=33.0
Q ss_pred eEEEEeeCCceEEEEEEEEcC-CEEE----------------------EEEecCCCCccHHHHHHHHHHHHHH
Q 047555 298 TILVFDLGGGTFDVSVLEVGD-GVFE----------------------VLSTSGDTHLGGDDFDKRVVDWLAE 347 (593)
Q Consensus 298 ~vlVvD~GggT~Dvsv~~~~~-~~~~----------------------vl~~~~~~~lGG~~id~~l~~~l~~ 347 (593)
++|++|+|.||.|+-.+.-.. +.+. -+.-. +...||--++.++.+++..
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~ 73 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKK 73 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhc
Confidence 479999999999998775321 1111 11112 2567888999999888775
No 196
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=35.16 E-value=39 Score=37.05 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=18.2
Q ss_pred CCeEEEEEcCccceEEEEEE
Q 047555 111 NEKVVGIDLGTTNSAVAAME 130 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~ 130 (593)
...++|||.|||.+++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 46799999999999999986
No 197
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=34.81 E-value=1.8e+02 Score=25.08 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHH---
Q 047555 339 KRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCS--- 415 (593)
Q Consensus 339 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~--- 415 (593)
..|.+++..-|.+.++.. .+..+...+|.++++.....++...... +..+.+.++.++++.+..
T Consensus 6 ~~lE~~v~g~Far~F~~~-vqPvEIa~~L~remd~~a~~~~~~r~~a------------PN~y~V~Ls~~D~~~l~~~~~ 72 (116)
T PF12401_consen 6 RRLERAVEGAFARVFRSE-VQPVEIAKALRREMDDQARVVSRGRTLA------------PNVYTVELSPEDYERLSPWGD 72 (116)
T ss_dssp ---SS--STHHHHHHTTS-S-THHHHHHHHHHHHHT-B---TT--B---------------EEEEEEEHHHHHHH-S-SH
T ss_pred HHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHhCCeecCCCCEEc------------CeeEEEEECHHHHHHHhhhHH
Confidence 334444444444444332 2455666778888888766655443321 135789999999998876
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEE
Q 047555 416 DLLDRLKKPVETALRDAKLSFNDLDEVIL 444 (593)
Q Consensus 416 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvL 444 (593)
.+.+++.+.+.+.....+......-.|-+
T Consensus 73 ~l~~el~~~l~~~a~~qgy~~~G~v~V~~ 101 (116)
T PF12401_consen 73 RLARELADYLAEHAREQGYTFVGPVTVEF 101 (116)
T ss_dssp HHHHHHHHHHHHHHHHHT-B-SS--EEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeecCCEEEEE
Confidence 68888888888888887765433333433
No 198
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=33.96 E-value=2.9e+02 Score=24.58 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=51.1
Q ss_pred CceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceE
Q 047555 197 VSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVL 276 (593)
Q Consensus 197 ~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v 276 (593)
-+..+..+.+|.+++. ++.++.+++...+-.... +..-..++|..-..-+....-.+.++++.+|++.+
T Consensus 60 ~~i~v~i~~~G~~~l~----~~~v~~~~l~~~l~~~~~-------~~~~~~v~i~aD~~v~y~~vv~vm~~l~~aG~~~v 128 (137)
T COG0848 60 KPIIVSVDADGQIYLN----DKPVSLEELEAALAALAK-------GKKNPRVVIRADKNVKYGTVVKVMDLLKEAGFKKV 128 (137)
T ss_pred CCEEEEEeCCCcEEEC----CccccHHHHHHHHHHHhc-------CCCCceEEEEeCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3556666777777765 334555555443333221 11112578888878888888888999999999999
Q ss_pred EEechhHH
Q 047555 277 RIINEPTA 284 (593)
Q Consensus 277 ~li~Ep~A 284 (593)
.++.++.+
T Consensus 129 ~L~t~~~~ 136 (137)
T COG0848 129 GLVTEKKK 136 (137)
T ss_pred EEEecCCC
Confidence 99988753
No 199
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=33.54 E-value=90 Score=23.55 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=25.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 047555 247 KAVVTVPAYFNDSQRTATKDAGRIAGLEV 275 (593)
Q Consensus 247 ~~viTVPa~~~~~~r~~l~~Aa~~AGl~~ 275 (593)
.-.++.|+.++..+|+.+...|...|+..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 45677899999999999999999999965
No 200
>PLN03170 chalcone synthase; Provisional
Probab=33.01 E-value=1.2e+02 Score=32.30 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=44.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCC-ChHhHHHHHHhHhCCCCC
Q 047555 409 KFEELCS-DLLDRLKKPVETALRDAKLSFNDLDEVILVGGST-RIPAVQELVKKMTGKDPN 467 (593)
Q Consensus 409 ~~e~~~~-~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~l~~~l~~~~g~~v~ 467 (593)
+-.+++. ...+-..+..+++|++++++..+|+.|+++-.+. ..|.+.-.|.+.+|.+..
T Consensus 97 ~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~ 157 (401)
T PLN03170 97 ARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPS 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCcc
Confidence 3334333 3445557788999999999999999988776554 699999999999986543
No 201
>PRK13326 pantothenate kinase; Reviewed
Probab=32.84 E-value=47 Score=33.28 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=19.7
Q ss_pred CCeEEEEEcCccceEEEEEECCe
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGK 133 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~ 133 (593)
-+.++.||.|+|+++++++++++
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECCE
Confidence 35689999999999999998764
No 202
>PLN03173 chalcone synthase; Provisional
Probab=32.69 E-value=1.5e+02 Score=31.63 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=44.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCC-ChHhHHHHHHhHhCCCCC
Q 047555 408 AKFEELCSD-LLDRLKKPVETALRDAKLSFNDLDEVILVGGST-RIPAVQELVKKMTGKDPN 467 (593)
Q Consensus 408 ~~~e~~~~~-~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~l~~~l~~~~g~~v~ 467 (593)
++-.+++.. ..+-..+.++++|+++++...+|+.|+++.-+. ..|.+.-.|.+.+|.+..
T Consensus 92 ~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~~ 153 (391)
T PLN03173 92 DARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSS 153 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCcc
Confidence 444444443 344456778899999999999999998877554 589999999999986543
No 203
>PLN03172 chalcone synthase family protein; Provisional
Probab=32.57 E-value=1.3e+02 Score=32.09 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCC-ChHhHHHHHHhHhCCCCC
Q 047555 415 SDLLDRLKKPVETALRDAKLSFNDLDEVILVGGST-RIPAVQELVKKMTGKDPN 467 (593)
Q Consensus 415 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~l~~~l~~~~g~~v~ 467 (593)
+...+-..+.++++|+++++...+|+.|+++-.+. .+|.+.-.|.+.+|.+..
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~~ 153 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPS 153 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCCC
Confidence 34445556778899999999999999998777655 699999999999986543
No 204
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=29.30 E-value=1.3e+02 Score=29.88 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHH
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAA 481 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAa 481 (593)
+++.|+| |++..|++.+.+++.++.++ ...||.+++|.=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 4666655 89999999999999997654 46899888887554
No 205
>PRK09698 D-allose kinase; Provisional
Probab=29.25 E-value=1.5e+02 Score=30.07 Aligned_cols=42 Identities=17% Similarity=0.066 Sum_probs=27.2
Q ss_pred cCCceEEEechhHHHHHHhccc-cCCCceEEEEeeCCceEEEEEE
Q 047555 271 AGLEVLRIINEPTAASLAYGFE-RKNNETILVFDLGGGTFDVSVL 314 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~-~~~~~~vlVvD~GggT~Dvsv~ 314 (593)
.|++ +.+.++..|+|++-... .....+++.+.+|.| +-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEE
Confidence 4775 58999999988764322 223457888888866 444444
No 206
>PRK00865 glutamate racemase; Provisional
Probab=28.29 E-value=1.7e+02 Score=29.15 Aligned_cols=43 Identities=21% Similarity=0.418 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHH
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~ 483 (593)
.++.|+| |++.+|++.+.+++.++.++ ...||..+++.-+.-+
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~~~v-~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLGEGV-TLIDSGEAIARRVARL 219 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcCCCC-EEECCHHHHHHHHHHH
Confidence 4666665 78999999999999987554 3578988877655433
No 207
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=27.58 E-value=3.3e+02 Score=29.33 Aligned_cols=28 Identities=36% Similarity=0.790 Sum_probs=23.4
Q ss_pred CCCceEEEEeeCCceEEEEEEEEc-CCEE
Q 047555 294 KNNETILVFDLGGGTFDVSVLEVG-DGVF 321 (593)
Q Consensus 294 ~~~~~vlVvD~GggT~Dvsv~~~~-~~~~ 321 (593)
.+...+|++|+||..+-++++++. ++.+
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~g~gt~ 100 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLGGDGTF 100 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeCCCCCc
Confidence 346789999999999999999998 3444
No 208
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=27.56 E-value=1.8e+02 Score=30.99 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCC-ChHhHHHHHHhHh
Q 047555 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGST-RIPAVQELVKKMT 462 (593)
Q Consensus 413 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~l~~~l~~~~ 462 (593)
+++-++.++.+.|-......+ ..+|.|+++||-+ ..+.+++.+.+.+
T Consensus 305 A~~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 305 AIKMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 334444555555554444433 2489999999999 8999999999876
No 209
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=27.32 E-value=2.9e+02 Score=30.25 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=33.1
Q ss_pred ceEEEEeeCCceEEEEEEEEcCCEEE-EEEecCCCCccHHHHHHHHH
Q 047555 297 ETILVFDLGGGTFDVSVLEVGDGVFE-VLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 297 ~~vlVvD~GggT~Dvsv~~~~~~~~~-vl~~~~~~~lGG~~id~~l~ 342 (593)
.+=+-||+|.+++-+-++.+..+... ...+.....-||+++|.+..
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 34477999999999999998876443 33344445568999987653
No 210
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=27.12 E-value=74 Score=30.55 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=23.8
Q ss_pred CCceEEEEeeCCceEEEEEEEEcCC-EEEE
Q 047555 295 NNETILVFDLGGGTFDVSVLEVGDG-VFEV 323 (593)
Q Consensus 295 ~~~~vlVvD~GggT~Dvsv~~~~~~-~~~v 323 (593)
+...+|++|+||.++-+.++++.+. .+++
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 3567999999999999999999865 4443
No 211
>PLN03168 chalcone synthase; Provisional
Probab=26.50 E-value=1.8e+02 Score=31.01 Aligned_cols=60 Identities=12% Similarity=0.255 Sum_probs=44.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCC-CChHhHHHHHHhHhCCCCC
Q 047555 408 AKFEELCS-DLLDRLKKPVETALRDAKLSFNDLDEVILVGGS-TRIPAVQELVKKMTGKDPN 467 (593)
Q Consensus 408 ~~~e~~~~-~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~l~~~l~~~~g~~v~ 467 (593)
++-.+++. ...+-..+..+++|+++++...+|+.|+++-.+ -.+|.+.-.|.+.+|.+..
T Consensus 91 ~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~ 152 (389)
T PLN03168 91 NVRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKPT 152 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCCc
Confidence 34444444 344445788899999999999999999876443 2579999999999986543
No 212
>PLN02854 3-ketoacyl-CoA synthase
Probab=26.30 E-value=1.5e+02 Score=32.83 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE-EeCCCChHhHHHHHHhHhCCC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVIL-VGGSTRIPAVQELVKKMTGKD 465 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~l~~~l~~~~g~~ 465 (593)
++.-++.-.-+...++++|++++++..+|+.||+ +.+....|.+..+|.+.+|.+
T Consensus 182 ~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 182 EEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 3333333444566778889999999999999886 344445799999999999865
No 213
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=23.52 E-value=97 Score=27.80 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=18.8
Q ss_pred CCeEEEEEcCccc-----eEEEEEECCe
Q 047555 111 NEKVVGIDLGTTN-----SAVAAMEGGK 133 (593)
Q Consensus 111 ~~~vVGIDfGTt~-----s~va~~~~g~ 133 (593)
|..+++|||-|++ |+.|+..+++
T Consensus 1 ~~~~LslD~STs~~~~~gTG~A~~~~~~ 28 (159)
T PF07066_consen 1 MKKVLSLDFSTSSKKGEGTGWAFFKGSD 28 (159)
T ss_pred CCeeEEEEEecccCCCCCceeEEecCCe
Confidence 4578999999998 9998877553
No 214
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=23.38 E-value=87 Score=29.92 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=16.6
Q ss_pred EEEEEcCccceEEEEEECCe
Q 047555 114 VVGIDLGTTNSAVAAMEGGK 133 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~ 133 (593)
++-||+|+|+++++++++++
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 57899999999999998774
No 215
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=22.97 E-value=3.8e+02 Score=28.71 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=40.0
Q ss_pred EEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHH-HHH
Q 047555 209 VKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTA-ASL 287 (593)
Q Consensus 209 ~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~A-Aal 287 (593)
+.+.+|.....+...-++..+-.++ -+ +.++|++-|..-+..--..+.-|+..+|++.++-+-=..| ||+
T Consensus 110 vG~YVPGG~a~~pStvlM~aiPA~v-------AG--V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAl 180 (412)
T PF00815_consen 110 VGLYVPGGRAPYPSTVLMTAIPAKV-------AG--VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAAL 180 (412)
T ss_dssp EEEE---SSS--THHHHHHHHHHHH-------HT---SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHH
T ss_pred eEEEccCCCCCccHHHHHcccchhh-------cC--CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHH
Confidence 3355564444454444544444433 22 4689999998876666778899999999999999988887 577
Q ss_pred Hhccc
Q 047555 288 AYGFE 292 (593)
Q Consensus 288 ~~~~~ 292 (593)
+|+.+
T Consensus 181 AyGTe 185 (412)
T PF00815_consen 181 AYGTE 185 (412)
T ss_dssp HH--S
T ss_pred HcCCC
Confidence 89865
No 216
>PRK13321 pantothenate kinase; Reviewed
Probab=22.78 E-value=3.3e+02 Score=26.94 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=27.7
Q ss_pred EEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHH
Q 047555 299 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLA 346 (593)
Q Consensus 299 vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~ 346 (593)
+|.+|+|+.++-+.++. ++.............-+...+-..+.+++.
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~i~~~~~~~T~~~~~~~~~~~~l~~l~~ 48 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDRLLRSFRLPTDKSRTSDELGILLLSLFR 48 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCEEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 57899999999999998 332222222223333455555555555444
No 217
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=22.49 E-value=2.3e+02 Score=28.34 Aligned_cols=55 Identities=18% Similarity=0.063 Sum_probs=34.1
Q ss_pred HHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHH
Q 047555 284 AASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338 (593)
Q Consensus 284 AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id 338 (593)
+|.+......++...++.+|+|..++-+.+.+.....+.+.......--.|.-+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~d 65 (267)
T PRK15080 11 AALINKTPVATESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVD 65 (267)
T ss_pred HHHhcCCCCCCCCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEee
Confidence 3444444333457789999999999998887765545555544433334454444
No 218
>PRK07058 acetate kinase; Provisional
Probab=22.40 E-value=2.3e+02 Score=30.12 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCC-ChHhHHHHHHhHhC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGST-RIPAVQELVKKMTG 463 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~l~~~l~~~~g 463 (593)
-+++-++.++.+.|-...... ..+|.|+++||-+ ..+.+++.+.+.++
T Consensus 296 lA~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 296 EALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 344455555665555555544 2589999999999 99999999998763
No 219
>PRK13324 pantothenate kinase; Reviewed
Probab=22.14 E-value=90 Score=31.16 Aligned_cols=20 Identities=15% Similarity=0.582 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEECCe
Q 047555 114 VVGIDLGTTNSAVAAMEGGK 133 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~ 133 (593)
++.||.|+|+++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999998543
No 220
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=22.10 E-value=45 Score=36.28 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.9
Q ss_pred EEEEcCccceEEEEEEC
Q 047555 115 VGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~ 131 (593)
+|||+|||+++++.++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998843
No 221
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=21.99 E-value=1.1e+02 Score=27.56 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=17.5
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 047555 112 EKVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~ 131 (593)
+.|++||.|+-|.+.+..+.
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 46899999999999998864
No 222
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=21.98 E-value=2.2e+02 Score=28.84 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCeE-EEEeCCCChHhHHHHHHhHhCCC
Q 047555 420 RLKKPVETALRDAKLSFNDLDEV-ILVGGSTRIPAVQELVKKMTGKD 465 (593)
Q Consensus 420 ~i~~~i~~~l~~~~~~~~~i~~V-vLvGG~s~~p~l~~~l~~~~g~~ 465 (593)
-+...|+++|++.+++..+|+.+ +-+..++..|.|-.+|.+.||.+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 45677889999999999999964 45567788999999999999854
No 223
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=21.74 E-value=4.5e+02 Score=22.14 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=35.6
Q ss_pred EEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECC--CceEEEE
Q 047555 528 SEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA--NGILSVT 592 (593)
Q Consensus 528 ~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~--~g~l~v~ 592 (593)
+..|....+....+.+.+|.-+.. .+..||+..+. +.....| ..+...|.+.. .|.|.++
T Consensus 53 ~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g-~~~~~~~~L~~~~~g~l~~~ 114 (119)
T cd04036 53 TFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLG-EKVRVTFSLNPQGKEELEVE 114 (119)
T ss_pred EEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCC-CcEEEEEECCCCCCceEEEE
Confidence 345554444445688889885432 56789999875 3332233 24566666665 3666664
No 224
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=21.67 E-value=88 Score=30.90 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=16.8
Q ss_pred EEEEcCccceEEEEEECCe
Q 047555 115 VGIDLGTTNSAVAAMEGGK 133 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~ 133 (593)
+.||+|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999998764
No 225
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=20.91 E-value=76 Score=37.27 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=17.6
Q ss_pred eEEEEEcCccceEEEEEECC
Q 047555 113 KVVGIDLGTTNSAVAAMEGG 132 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g 132 (593)
.+||+|+||+.++.|+.+.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 68999999999999998644
No 226
>PLN02902 pantothenate kinase
Probab=20.59 E-value=4.7e+02 Score=30.87 Aligned_cols=50 Identities=14% Similarity=-0.004 Sum_probs=30.2
Q ss_pred CCCCeEEEEeCCCCh-HhHHHHHHh---HhC---CCCCCCCCChhHHHhHHHHHhhh
Q 047555 437 NDLDEVILVGGSTRI-PAVQELVKK---MTG---KDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~-p~l~~~l~~---~~g---~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
.+++.|+++|.+-+- +...+.|.. ++. .+.....+--+.-|.||.+....
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~~ 401 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEK 401 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCCc
Confidence 468889999988432 233333332 332 34444556667789999876543
No 227
>PRK12408 glucokinase; Provisional
Probab=20.47 E-value=71 Score=33.18 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.1
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~ 131 (593)
+..++|+|+|.|++++++++.
T Consensus 15 ~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 15 PESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred cccEEEEEcChhhhheeEEec
Confidence 556899999999999998853
No 228
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=20.19 E-value=64 Score=35.20 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=15.1
Q ss_pred EEEEcCccceEEEEEEC
Q 047555 115 VGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~ 131 (593)
||||+||+++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 59999999999999853
No 229
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.07 E-value=3.8e+02 Score=27.18 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=37.3
Q ss_pred CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 296 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 296 ~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
...++-+|+|+..+.++++......+..........-....+-+.+.+.+.+.+.
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 59 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLK 59 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHH
Confidence 4578999999999999999987765444443333333335666677766665554
No 230
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=20.05 E-value=1.1e+02 Score=25.29 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.1
Q ss_pred CCCcCeEEEEEEECCCceEEEEc
Q 047555 571 PRGVPQIEVKFDIDANGILSVTA 593 (593)
Q Consensus 571 ~~g~~~i~v~f~~d~~g~l~v~a 593 (593)
|.+.....|+-.+..||+|+|+|
T Consensus 67 P~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 67 PPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCCCchhEEEEeCCCCeEEEEc
Confidence 45556678999999999999986
Done!