BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047556
(1175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 69/246 (28%)
Query: 784 TNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNC 843
++++ TI+ G P ++ +E L L LP+++ + L+ L I C
Sbjct: 104 SHLQHXTIDAAGLXELPD--TXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRAC 160
Query: 844 KNLQHLVD-----------ENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQ 892
L L + + + L+SLR L + R LP+S+ L+
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLR------LEWTGIRSLPASIANLQ-------- 206
Query: 893 HLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIP---DG 949
LK L IR P L++L P I LE+L + C L + P G
Sbjct: 207 --------------NLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 950 LHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCP 1009
++R+ ++ C +L++L P D+H+L LE L L+ C
Sbjct: 252 RAPLKRLILKDCSNLLTL-----------------------PLDIHRLTQLEKLDLRGCV 288
Query: 1010 SIVRFP 1015
++ R P
Sbjct: 289 NLSRLP 294
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 26/204 (12%)
Query: 665 PSKMRKLINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFL 724
P + +L +L+H I A L E+P ++ L+ L+ + + L L L
Sbjct: 97 PDQAFRLSHLQHXTIDAAGL-XELPDTXQQFAGLETLTLARNPLRALPASIASLNRLREL 155
Query: 725 SGELC--ISRLENVTISREASEEILYENQ---NLEALSLQWGS----QFDISRNEDKEEL 775
S C ++ L S +AS E +Q NL++L L+W I+ ++ + L
Sbjct: 156 SIRACPELTELPEPLASTDASGE----HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 776 V-----LGMLKPCTN----IKKLTINGYGGKR-FPSWIGDPSYSKMEVLILENCENCTYL 825
L L P + +++L + G R +P G + ++ LIL++C N L
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDCSNLLTL 269
Query: 826 PSTVLWSSSLKMLEIHNCKNLQHL 849
P + + L+ L++ C NL L
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRL 293
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 817 ENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC----------D 866
ENC C+ LP + +S S K+ E+ L +L + +LQ++S IT+
Sbjct: 704 ENCPACSQLPQNIQFSPSAKLQEV-----LDYLTNSASLQMKSPAITATLEGKNRTLYLQ 758
Query: 867 SLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRL 911
S+T I R P+ K L+ + Q L D T+ L +L
Sbjct: 759 SVTSIEERTRPNLSKTLKELGLVDGQELAVA--DVTTPQTVLFKL 801
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 1116 KSFPEVGLPSSILWL------NIWSCPMLEKEYKRDTGKEWSKIATIPRVCIDGKFVGG 1168
K FP+ G +++ + S +LE E R KE+S T P++ IDG+F GG
Sbjct: 28 KDFPQCGFSQTVVQILKSLNAPFESVNILENELLRQGLKEYSSWPTFPQLYIDGEFFGG 86
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 817 ENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC----------D 866
ENC C+ LP + +S S K+ E+ L +L + +LQ++S IT+
Sbjct: 362 ENCPACSQLPQNIQFSPSAKLQEV-----LDYLTNSASLQMKSPAITATLEGKNRTLYLQ 416
Query: 867 SLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRL 911
S+T I R P+ K L+ + Q L D T+ L +L
Sbjct: 417 SVTSIEERTRPNLSKTLKELGLVDGQELAVA--DVTTPQTVLFKL 459
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 817 ENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC----------D 866
ENC C+ LP + +S S K+ E+ L +L + +LQ++S IT+
Sbjct: 343 ENCPACSQLPQNIQFSPSAKLQEV-----LDYLTNSASLQMKSPAITATLEGKNRTLYLQ 397
Query: 867 SLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRL 911
S+T I R P+ K L+ + Q L D T+ L +L
Sbjct: 398 SVTSIEERTRPNLSKTLKELGLVDGQELAVA--DVTTPQTVLFKL 440
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 817 ENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC----------D 866
ENC C+ LP + +S S K+ E+ L +L + +LQ++S IT+
Sbjct: 333 ENCPACSQLPQNIQFSPSAKLQEV-----LDYLTNSASLQMKSPAITATLEGKNRTLYLQ 387
Query: 867 SLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRL 911
S+T I R P+ K L+ + Q L D T+ L +L
Sbjct: 388 SVTSIEERTRPNLSKTLKELGLVDGQELAVA--DVTTPQTVLFKL 430
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 817 ENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC----------D 866
ENC C+ LP + +S S K+ E+ L +L + +LQ++S IT+
Sbjct: 333 ENCPACSQLPQNIQFSPSAKLQEV-----LDYLTNSASLQMKSPAITATLEGKNRTLYLQ 387
Query: 867 SLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRL 911
S+T I R P+ K L+ + Q L D T+ L +L
Sbjct: 388 SVTSIEERTRPNLSKTLKELGLVDGQELAVA--DVTTPQTVLFKL 430
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 817 ENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC----------D 866
ENC C+ LP + +S S K+ E+ L +L + +LQ++S IT+
Sbjct: 330 ENCPACSQLPQNIQFSPSAKLQEV-----LDYLTNSASLQMKSPAITATLEGKNRTLYLQ 384
Query: 867 SLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRL 911
S+T I R P+ K L+ + Q L D T+ L +L
Sbjct: 385 SVTSIEERTRPNLSKTLKELGLVDGQELAVA--DVTTPQTVLFKL 427
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 817 ENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC----------D 866
ENC C+ LP + +S S K+ E+ L +L + +LQ++S IT+
Sbjct: 333 ENCPACSQLPQNIQFSPSAKLQEV-----LDYLTNSASLQMKSPAITATLEGKNRTLYLQ 387
Query: 867 SLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRL 911
S+T I R P+ K L+ + Q L D T+ L +L
Sbjct: 388 SVTSIEERTRPNLSKTLKELGLVDGQELAVA--DVTTPQTVLFKL 430
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 817 ENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC----------D 866
ENC C+ LP + +S S K+ E+ L +L + +LQ++S IT+
Sbjct: 333 ENCPACSQLPQNIQFSPSAKLQEV-----LDYLTNSASLQMKSPAITATLEGKNRTLYLQ 387
Query: 867 SLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRL 911
S+T I R P+ K L+ + Q L D T+ L +L
Sbjct: 388 SVTSIEERTRPNLSKTLKELGLVDGQELAVA--DVTTPQTVLFKL 430
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 29/108 (26%)
Query: 595 NLLSKCRKLRVLSLSR-SYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINXXXX 653
N + R+L + L R SYI+E G+ G +LRYLNL+ +R +P T
Sbjct: 157 NRIPSLRRLDLGELKRLSYISE---GAFEGLSNLRYLNLAMCNLREIPNLT--------- 204
Query: 654 XXXXXXXXXXXPSKMRKLINLRHLDITGAYLIKEMPFGMKELKNLQAL 701
LI L LD++G +L P + L +LQ L
Sbjct: 205 ----------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK 642
+ K L+ L L + + LP G +L YLNL+H +++LPK
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK 642
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK 642
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS 643
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS 643
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK 642
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS 643
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 144 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 191
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS 643
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS 643
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK 642
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 143 LLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS 643
LL+ KL LSL+ + +TELP G ++G ++L L L + +PK
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 23 GELLNFVRQLGGGVDSELKKWKNTLMMIQAVLSDAEE--KQLTDQAVKIWLDNLRDLAYD 80
GELL +L GV ++ L A L E ++ D K+W D +R+L+Y
Sbjct: 11 GELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWADEVRELSYV 70
Query: 81 VEDNLDVF 88
+ED +D F
Sbjct: 71 IEDVVDKF 78
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 198 VSANSPSGHANIAV--IPIVGMGGIGKTTLAREVYNDKEVETFK 239
++AN P G ++A+ + +VG GG+GK+ L + D+ VE ++
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE 44
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 987 LEALPNDLH-KLNSLEHLYLQRCPSIVRFPEEGFPNNLVELKIRGVDVKMYKAAIQWGLH 1045
L++LPN + +L SL LYL + P F N L L + ++
Sbjct: 40 LKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVF-NKLTSLTYLNLSTNQLQSLPNGVFD 97
Query: 1046 RLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRN-LKKLSSKGFQSLTSL 1104
+LT L+ L + + ++ + PD + T L L + ++N LK + F LTSL
Sbjct: 98 KLTQLKELAL---NTNQLQSLPDGVFDKL--TQLKDLRL--YQNQLKSVPDGVFDRLTSL 150
Query: 1105 EFLWIDD------CPNLKSFPE 1120
+++W+ D CP ++ E
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLSE 172
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKA 244
NI + I+G G+GKT+L NDK + +K I A
Sbjct: 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA 43
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 26/138 (18%)
Query: 919 LTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISS 978
LTS+ GI P + +L + + KL+S+P G+ + L L + L
Sbjct: 19 LTSVPTGI--PSSATRLEL-ESNKLQSLPHGVFD----------KLTQLTKLSL------ 59
Query: 979 VRIWSCEKLEALPNDL-HKLNSLEHLYLQRCPSIVRFPEEGFPNNLVELKIRGVDVKMYK 1037
S ++++LP+ + KL L LYL + P F + L +LK +D K
Sbjct: 60 ----SQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVF-DKLTQLKELALDTNQLK 113
Query: 1038 AAIQWGLHRLTSLRRLWI 1055
+ RLTSL+++W+
Sbjct: 114 SVPDGIFDRLTSLQKIWL 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,640,616
Number of Sequences: 62578
Number of extensions: 1286008
Number of successful extensions: 3330
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3276
Number of HSP's gapped (non-prelim): 68
length of query: 1175
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1065
effective length of database: 8,089,757
effective search space: 8615591205
effective search space used: 8615591205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)