Query 047556
Match_columns 1175
No_of_seqs 708 out of 5006
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-83 4.7E-88 772.9 44.7 647 7-704 4-673 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.3E-63 1.6E-67 633.5 52.7 697 181-1016 183-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-41 4.5E-46 374.0 14.5 276 187-470 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.3E-33 4.9E-38 363.7 25.8 526 537-1136 70-605 (968)
5 PLN00113 leucine-rich repeat r 100.0 3.7E-33 8E-38 361.7 23.5 490 594-1138 86-584 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 3E-28 6.5E-33 250.2 -14.1 446 601-1137 45-540 (565)
7 KOG4194 Membrane glycoprotein 99.9 2.8E-24 6E-29 231.1 5.9 132 992-1131 311-445 (873)
8 KOG4194 Membrane glycoprotein 99.9 1.9E-24 4.1E-29 232.4 2.0 359 602-1111 79-448 (873)
9 PLN03210 Resistant to P. syrin 99.9 7.3E-22 1.6E-26 255.0 24.4 105 593-701 550-662 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 2E-25 4.4E-30 229.5 -8.6 440 597-1113 87-539 (565)
11 KOG0618 Serine/threonine phosp 99.9 1.7E-24 3.6E-29 246.0 -5.4 459 596-1164 40-510 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 3.3E-24 7.3E-29 231.4 -6.2 364 600-1117 6-377 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 1.2E-23 2.7E-28 227.1 -3.1 371 535-1016 6-380 (1255)
14 KOG0618 Serine/threonine phosp 99.8 1.3E-22 2.9E-27 230.8 -6.4 415 600-1140 20-466 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 9.8E-15 2.1E-19 174.0 17.1 255 785-1113 202-456 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 2.1E-14 4.5E-19 171.2 15.9 256 809-1137 201-457 (788)
17 KOG4237 Extracellular matrix p 99.6 1.7E-16 3.6E-21 164.4 -2.7 121 602-723 68-192 (498)
18 PRK15370 E3 ubiquitin-protein 99.5 1.6E-13 3.6E-18 165.0 13.2 81 601-690 178-258 (754)
19 KOG4237 Extracellular matrix p 99.5 4.1E-15 9E-20 154.2 -1.2 117 590-707 80-199 (498)
20 PRK04841 transcriptional regul 99.4 9.6E-12 2.1E-16 161.3 25.4 292 182-519 14-333 (903)
21 PRK15370 E3 ubiquitin-protein 99.4 9.3E-13 2E-17 158.6 11.4 225 876-1137 197-427 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.3 8.8E-13 1.9E-17 161.3 5.4 108 599-707 543-653 (889)
23 KOG0617 Ras suppressor protein 99.3 5.1E-14 1.1E-18 128.7 -5.7 106 599-706 31-137 (264)
24 KOG0617 Ras suppressor protein 99.3 7.7E-14 1.7E-18 127.6 -4.6 130 594-725 49-179 (264)
25 PRK00411 cdc6 cell division co 99.3 4.7E-10 1E-14 129.9 25.5 300 180-497 28-358 (394)
26 TIGR03015 pepcterm_ATPase puta 99.2 1.4E-09 2.9E-14 118.8 21.4 181 210-396 44-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.2 6E-09 1.3E-13 119.3 25.8 300 182-497 15-350 (365)
28 PRK00080 ruvB Holliday junctio 99.1 1.5E-09 3.3E-14 121.0 15.0 277 181-498 24-311 (328)
29 PF01637 Arch_ATPase: Archaeal 99.1 6.8E-10 1.5E-14 118.8 11.1 195 184-391 1-233 (234)
30 TIGR00635 ruvB Holliday juncti 99.0 5E-09 1.1E-13 116.5 17.9 276 182-498 4-290 (305)
31 COG2909 MalT ATP-dependent tra 99.0 2.6E-08 5.7E-13 115.4 22.0 289 192-520 25-340 (894)
32 PRK15386 type III secretion pr 98.9 6.9E-09 1.5E-13 113.4 11.9 162 952-1140 53-215 (426)
33 PF05729 NACHT: NACHT domain 98.9 1E-08 2.2E-13 102.9 11.4 144 210-359 1-163 (166)
34 COG3899 Predicted ATPase [Gene 98.8 4.9E-08 1.1E-12 120.8 17.4 312 183-517 1-385 (849)
35 PTZ00112 origin recognition co 98.8 3.7E-07 8.1E-12 106.7 22.2 301 181-497 754-1086(1164)
36 cd00116 LRR_RI Leucine-rich re 98.8 1.5E-09 3.4E-14 122.2 0.4 111 595-706 17-147 (319)
37 PRK06893 DNA replication initi 98.7 3.1E-07 6.6E-12 96.4 13.9 153 210-394 40-205 (229)
38 cd00116 LRR_RI Leucine-rich re 98.6 7E-09 1.5E-13 116.9 0.9 91 594-684 44-149 (319)
39 PF14580 LRR_9: Leucine-rich r 98.6 1.9E-08 4E-13 98.5 3.4 104 599-707 17-124 (175)
40 COG2256 MGS1 ATPase related to 98.6 2.4E-07 5.3E-12 98.5 11.6 171 181-387 29-207 (436)
41 KOG4341 F-box protein containi 98.6 6.1E-10 1.3E-14 117.6 -8.2 297 833-1165 138-460 (483)
42 KOG0532 Leucine-rich repeat (L 98.6 4.9E-09 1.1E-13 114.9 -2.3 175 599-822 73-247 (722)
43 PF13401 AAA_22: AAA domain; P 98.6 1.7E-07 3.7E-12 89.6 7.9 118 209-328 4-125 (131)
44 COG3903 Predicted ATPase [Gene 98.6 1.4E-07 3E-12 101.3 7.8 292 208-519 13-315 (414)
45 PF14580 LRR_9: Leucine-rich r 98.5 4.2E-08 9.1E-13 96.0 3.5 104 599-706 40-150 (175)
46 PRK15386 type III secretion pr 98.5 3.3E-07 7.2E-12 100.5 10.6 57 905-965 51-108 (426)
47 PF13855 LRR_8: Leucine rich r 98.5 1E-07 2.2E-12 76.3 4.7 58 601-658 1-59 (61)
48 COG4886 Leucine-rich repeat (L 98.5 7.2E-08 1.6E-12 111.8 5.0 183 597-827 112-295 (394)
49 PRK13342 recombination factor 98.5 1.1E-06 2.5E-11 101.1 14.6 177 182-393 12-197 (413)
50 PTZ00202 tuzin; Provisional 98.5 4.3E-06 9.3E-11 90.9 16.8 168 176-358 256-433 (550)
51 KOG1259 Nischarin, modulator o 98.4 3.3E-08 7.1E-13 99.5 -0.2 195 923-1137 207-411 (490)
52 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.7E-06 3.8E-11 91.5 12.9 169 187-393 22-202 (226)
53 PRK04195 replication factor C 98.4 2.1E-05 4.6E-10 92.6 22.8 246 182-469 14-271 (482)
54 PRK05564 DNA polymerase III su 98.4 6E-06 1.3E-10 91.6 16.7 179 182-390 4-188 (313)
55 PRK14961 DNA polymerase III su 98.4 8.9E-06 1.9E-10 91.9 17.8 190 182-389 16-217 (363)
56 PRK07003 DNA polymerase III su 98.4 1.4E-05 3.1E-10 93.7 19.5 196 182-394 16-223 (830)
57 PLN03150 hypothetical protein; 98.4 3.5E-07 7.6E-12 110.8 6.7 100 602-701 419-520 (623)
58 PF05496 RuvB_N: Holliday junc 98.4 4.1E-06 8.9E-11 83.5 12.5 180 182-395 24-224 (233)
59 COG1474 CDC6 Cdc6-related prot 98.4 2E-05 4.3E-10 87.8 19.0 207 183-392 18-238 (366)
60 PRK12402 replication factor C 98.4 6.7E-06 1.5E-10 93.2 15.8 198 182-391 15-225 (337)
61 PF13191 AAA_16: AAA ATPase do 98.3 8.3E-07 1.8E-11 90.8 7.1 50 183-235 1-50 (185)
62 PRK14960 DNA polymerase III su 98.3 9.2E-06 2E-10 94.3 16.1 191 182-389 15-216 (702)
63 PRK14963 DNA polymerase III su 98.3 1.9E-06 4.2E-11 100.1 10.7 197 182-389 14-214 (504)
64 cd00009 AAA The AAA+ (ATPases 98.3 3.3E-06 7.2E-11 82.8 10.9 125 185-330 1-131 (151)
65 KOG4341 F-box protein containi 98.3 8.8E-09 1.9E-13 109.0 -8.1 280 809-1119 138-443 (483)
66 PRK14949 DNA polymerase III su 98.3 1.3E-05 2.9E-10 96.0 16.8 184 182-392 16-221 (944)
67 PF13173 AAA_14: AAA domain 98.3 2E-06 4.3E-11 81.2 8.3 118 210-350 3-126 (128)
68 KOG2028 ATPase related to the 98.3 8E-06 1.7E-10 85.1 12.7 157 207-386 160-330 (554)
69 KOG1259 Nischarin, modulator o 98.3 2.2E-07 4.8E-12 93.7 1.0 112 592-708 298-411 (490)
70 PLN03025 replication factor C 98.3 1E-05 2.2E-10 89.9 13.9 181 182-388 13-196 (319)
71 TIGR02903 spore_lon_C ATP-depe 98.3 1.6E-05 3.4E-10 95.5 16.4 203 182-395 154-398 (615)
72 KOG0532 Leucine-rich repeat (L 98.2 6.3E-08 1.4E-12 106.4 -3.8 127 594-725 114-240 (722)
73 COG4886 Leucine-rich repeat (L 98.2 9.5E-07 2.1E-11 102.5 5.4 192 604-844 96-288 (394)
74 PRK06645 DNA polymerase III su 98.2 2.1E-05 4.6E-10 91.0 16.2 193 182-388 21-225 (507)
75 PRK12323 DNA polymerase III su 98.2 2.6E-05 5.7E-10 90.4 16.5 197 182-390 16-223 (700)
76 PRK14962 DNA polymerase III su 98.2 3.6E-05 7.8E-10 88.9 17.8 200 182-408 14-239 (472)
77 PRK14957 DNA polymerase III su 98.2 2.9E-05 6.3E-10 90.4 16.8 186 182-394 16-223 (546)
78 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.9E-11 69.8 4.1 58 625-683 1-60 (61)
79 PRK08727 hypothetical protein; 98.2 3.1E-05 6.6E-10 81.5 15.3 148 210-389 42-201 (233)
80 PRK00440 rfc replication facto 98.2 3.7E-05 8E-10 86.4 17.1 180 182-389 17-200 (319)
81 cd01128 rho_factor Transcripti 98.2 3.6E-06 7.9E-11 88.1 7.8 89 209-299 16-113 (249)
82 PRK08691 DNA polymerase III su 98.2 3.2E-05 7E-10 90.8 15.9 191 182-389 16-217 (709)
83 PRK14956 DNA polymerase III su 98.2 1.6E-05 3.4E-10 89.9 12.9 189 182-387 18-217 (484)
84 PRK09112 DNA polymerase III su 98.2 4E-05 8.8E-10 85.0 15.7 197 181-392 22-240 (351)
85 PRK07994 DNA polymerase III su 98.1 3.5E-05 7.7E-10 91.1 15.6 192 182-390 16-218 (647)
86 TIGR02397 dnaX_nterm DNA polym 98.1 7.5E-05 1.6E-09 85.2 18.0 184 182-392 14-218 (355)
87 PRK09087 hypothetical protein; 98.1 2.9E-05 6.3E-10 80.8 13.2 140 210-392 45-195 (226)
88 PRK07471 DNA polymerase III su 98.1 8.6E-05 1.9E-09 82.9 17.7 195 181-392 18-238 (365)
89 PRK14964 DNA polymerase III su 98.1 5E-05 1.1E-09 87.1 15.7 181 182-388 13-213 (491)
90 PRK08084 DNA replication initi 98.1 7.2E-05 1.6E-09 78.8 15.7 152 210-393 46-210 (235)
91 PRK05896 DNA polymerase III su 98.1 6.3E-05 1.4E-09 87.6 16.5 195 182-393 16-222 (605)
92 PRK08903 DnaA regulatory inact 98.1 4.1E-05 9E-10 80.8 13.9 152 209-396 42-203 (227)
93 PRK14958 DNA polymerase III su 98.1 6.3E-05 1.4E-09 87.9 16.6 182 182-389 16-217 (509)
94 TIGR00678 holB DNA polymerase 98.1 7.4E-05 1.6E-09 76.2 15.1 91 288-388 95-187 (188)
95 PRK07940 DNA polymerase III su 98.1 5.7E-05 1.2E-09 85.0 15.4 179 182-391 5-212 (394)
96 PRK13341 recombination factor 98.1 2.7E-05 5.8E-10 94.3 13.4 172 182-387 28-212 (725)
97 PF05621 TniB: Bacterial TniB 98.1 0.00012 2.7E-09 76.9 16.2 198 189-390 44-259 (302)
98 PRK14951 DNA polymerase III su 98.1 8.3E-05 1.8E-09 87.9 16.7 196 182-390 16-223 (618)
99 PLN03150 hypothetical protein; 98.0 7E-06 1.5E-10 99.6 7.7 96 593-688 434-531 (623)
100 PF00308 Bac_DnaA: Bacterial d 98.0 8.7E-05 1.9E-09 77.0 14.6 187 183-393 10-209 (219)
101 PRK09376 rho transcription ter 98.0 1.2E-05 2.5E-10 87.5 7.7 89 209-299 169-266 (416)
102 PRK14969 DNA polymerase III su 98.0 0.00013 2.9E-09 85.9 17.1 185 182-392 16-221 (527)
103 PRK09111 DNA polymerase III su 98.0 0.00012 2.7E-09 86.7 16.6 196 182-391 24-232 (598)
104 PRK14955 DNA polymerase III su 98.0 7.5E-05 1.6E-09 85.5 14.0 197 182-389 16-225 (397)
105 TIGR01242 26Sp45 26S proteasom 98.0 0.00011 2.4E-09 83.5 15.1 178 182-386 122-328 (364)
106 PRK14087 dnaA chromosomal repl 98.0 0.00016 3.5E-09 83.5 16.2 169 209-394 141-321 (450)
107 PRK05642 DNA replication initi 97.9 7.9E-05 1.7E-09 78.4 12.4 155 210-396 46-212 (234)
108 KOG0989 Replication factor C, 97.9 5.8E-05 1.3E-09 77.7 10.5 183 181-385 35-223 (346)
109 COG2255 RuvB Holliday junction 97.9 0.00023 4.9E-09 72.6 14.3 176 182-391 26-222 (332)
110 KOG3207 Beta-tubulin folding c 97.9 1.8E-06 4E-11 92.4 -0.5 42 782-823 299-340 (505)
111 KOG3207 Beta-tubulin folding c 97.9 2.2E-06 4.7E-11 91.8 -0.1 111 596-706 141-256 (505)
112 PRK14950 DNA polymerase III su 97.9 0.00013 2.9E-09 87.6 15.1 194 182-392 16-221 (585)
113 PRK14959 DNA polymerase III su 97.9 0.00022 4.7E-09 83.7 16.1 197 182-396 16-225 (624)
114 PRK14970 DNA polymerase III su 97.9 0.00026 5.6E-09 80.8 16.7 181 182-388 17-205 (367)
115 PF14516 AAA_35: AAA-like doma 97.9 0.00062 1.3E-08 75.8 18.7 200 182-399 11-246 (331)
116 KOG2227 Pre-initiation complex 97.9 0.00035 7.6E-09 76.3 15.7 178 180-360 148-339 (529)
117 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 58.2 3.4 38 626-664 2-39 (44)
118 PRK07133 DNA polymerase III su 97.9 0.0004 8.8E-09 82.8 17.4 194 182-392 18-220 (725)
119 TIGR00767 rho transcription te 97.8 4.2E-05 9.1E-10 83.9 8.1 89 209-299 168-265 (415)
120 PRK07764 DNA polymerase III su 97.8 0.00035 7.6E-09 85.9 17.0 190 182-388 15-217 (824)
121 PRK14952 DNA polymerase III su 97.8 0.00055 1.2E-08 80.8 17.9 198 182-396 13-224 (584)
122 PRK11331 5-methylcytosine-spec 97.8 0.00012 2.6E-09 81.8 11.5 109 182-303 175-286 (459)
123 PRK06305 DNA polymerase III su 97.8 0.00052 1.1E-08 79.4 17.0 183 182-392 17-223 (451)
124 PRK08451 DNA polymerase III su 97.8 0.00069 1.5E-08 78.7 17.9 179 182-391 14-217 (535)
125 TIGR00362 DnaA chromosomal rep 97.8 0.00031 6.6E-09 81.2 15.2 161 209-390 136-308 (405)
126 PRK14954 DNA polymerase III su 97.8 0.00043 9.2E-09 82.4 16.4 200 182-391 16-228 (620)
127 PRK14953 DNA polymerase III su 97.8 0.00079 1.7E-08 78.4 18.3 183 182-391 16-219 (486)
128 PHA02544 44 clamp loader, smal 97.8 0.00016 3.6E-09 80.8 12.3 147 182-356 21-170 (316)
129 PF05673 DUF815: Protein of un 97.8 0.00046 9.9E-09 70.3 14.0 126 179-332 24-154 (249)
130 PRK06620 hypothetical protein; 97.8 0.00053 1.1E-08 70.8 14.4 137 210-391 45-188 (214)
131 TIGR02881 spore_V_K stage V sp 97.8 0.00034 7.3E-09 75.4 13.6 161 183-360 7-192 (261)
132 PF12799 LRR_4: Leucine Rich r 97.8 2.3E-05 4.9E-10 57.0 3.0 41 601-642 1-41 (44)
133 PRK14948 DNA polymerase III su 97.7 0.00078 1.7E-08 80.7 17.7 195 182-391 16-221 (620)
134 KOG0531 Protein phosphatase 1, 97.7 6.5E-06 1.4E-10 95.5 -0.2 103 597-704 91-194 (414)
135 CHL00181 cbbX CbbX; Provisiona 97.7 0.00099 2.1E-08 72.2 16.5 134 210-360 60-210 (287)
136 PRK14971 DNA polymerase III su 97.7 0.00084 1.8E-08 80.5 17.4 181 182-389 17-219 (614)
137 KOG2543 Origin recognition com 97.7 0.00023 5.1E-09 75.6 10.6 167 181-358 5-192 (438)
138 PRK14088 dnaA chromosomal repl 97.7 0.00062 1.3E-08 78.7 15.1 161 209-390 130-303 (440)
139 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00013 2.7E-09 91.1 10.0 156 182-358 187-362 (852)
140 TIGR02639 ClpA ATP-dependent C 97.7 0.00038 8.2E-09 86.4 14.0 158 182-359 182-358 (731)
141 KOG0531 Protein phosphatase 1, 97.7 9.4E-06 2E-10 94.1 -0.1 109 599-712 70-178 (414)
142 PRK14086 dnaA chromosomal repl 97.7 0.0018 3.8E-08 75.9 18.2 160 210-390 315-486 (617)
143 PRK14965 DNA polymerase III su 97.6 0.0015 3.2E-08 78.3 17.6 195 182-393 16-222 (576)
144 KOG4579 Leucine-rich repeat (L 97.6 1.4E-05 3E-10 71.7 0.0 94 596-691 48-141 (177)
145 CHL00095 clpC Clp protease ATP 97.6 0.0005 1.1E-08 86.4 13.8 156 182-357 179-352 (821)
146 PRK12422 chromosomal replicati 97.6 0.00099 2.1E-08 76.7 14.6 154 209-385 141-306 (445)
147 TIGR02880 cbbX_cfxQ probable R 97.6 0.00083 1.8E-08 72.9 13.2 133 211-360 60-209 (284)
148 PRK03992 proteasome-activating 97.6 0.00068 1.5E-08 77.2 13.0 177 182-385 131-336 (389)
149 COG0593 DnaA ATPase involved i 97.6 0.0026 5.6E-08 70.7 16.8 164 208-392 112-290 (408)
150 KOG1909 Ran GTPase-activating 97.5 3.1E-05 6.7E-10 81.0 1.7 90 594-683 23-131 (382)
151 PRK00149 dnaA chromosomal repl 97.5 0.00096 2.1E-08 78.1 14.4 161 209-390 148-320 (450)
152 PRK06647 DNA polymerase III su 97.5 0.0027 5.8E-08 75.3 18.0 192 182-390 16-218 (563)
153 PRK07399 DNA polymerase III su 97.5 0.0028 6.1E-08 69.5 16.1 198 182-392 4-221 (314)
154 KOG4579 Leucine-rich repeat (L 97.5 9.2E-06 2E-10 72.8 -2.7 104 601-706 27-133 (177)
155 TIGR00602 rad24 checkpoint pro 97.5 0.00068 1.5E-08 80.5 11.4 52 181-233 83-134 (637)
156 PF00004 AAA: ATPase family as 97.4 0.00037 8.1E-09 66.4 7.7 22 212-233 1-22 (132)
157 PRK05707 DNA polymerase III su 97.4 0.0025 5.5E-08 70.3 14.6 97 288-392 105-203 (328)
158 TIGR00763 lon ATP-dependent pr 97.4 0.004 8.6E-08 77.9 17.8 52 182-233 320-371 (775)
159 KOG2120 SCF ubiquitin ligase, 97.4 7.1E-06 1.5E-10 83.3 -5.2 82 602-684 186-272 (419)
160 COG3267 ExeA Type II secretory 97.4 0.0081 1.8E-07 61.0 16.2 179 209-393 51-246 (269)
161 PRK11034 clpA ATP-dependent Cl 97.4 0.00042 9.1E-09 84.6 8.4 157 183-359 187-362 (758)
162 PRK05563 DNA polymerase III su 97.4 0.0054 1.2E-07 73.1 17.5 191 182-389 16-217 (559)
163 KOG0991 Replication factor C, 97.3 0.0011 2.4E-08 65.3 9.3 101 182-310 27-134 (333)
164 PRK08116 hypothetical protein; 97.3 0.00089 1.9E-08 71.8 9.7 104 210-329 115-221 (268)
165 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0022 4.8E-08 80.9 14.0 157 182-358 173-348 (852)
166 PRK10536 hypothetical protein; 97.3 0.0039 8.5E-08 64.5 13.1 137 182-331 55-215 (262)
167 KOG2120 SCF ubiquitin ligase, 97.3 2.2E-05 4.7E-10 79.8 -3.1 133 974-1135 234-373 (419)
168 PTZ00361 26 proteosome regulat 97.3 0.0014 3.1E-08 74.6 10.9 158 182-360 183-368 (438)
169 KOG1859 Leucine-rich repeat pr 97.2 2E-05 4.2E-10 89.7 -4.4 95 626-725 165-260 (1096)
170 PRK08769 DNA polymerase III su 97.2 0.0074 1.6E-07 65.9 15.4 95 288-392 112-208 (319)
171 PTZ00454 26S protease regulato 97.2 0.0049 1.1E-07 69.9 14.4 157 182-359 145-329 (398)
172 TIGR03689 pup_AAA proteasome A 97.2 0.0048 1E-07 71.4 14.2 168 182-359 182-378 (512)
173 smart00382 AAA ATPases associa 97.2 0.0015 3.2E-08 63.3 9.0 87 210-301 3-90 (148)
174 KOG1859 Leucine-rich repeat pr 97.1 2.7E-05 5.8E-10 88.6 -4.6 109 593-706 179-289 (1096)
175 PRK10787 DNA-binding ATP-depen 97.1 0.016 3.5E-07 71.7 18.8 166 181-359 321-506 (784)
176 PRK10865 protein disaggregatio 97.1 0.0014 3.1E-08 82.2 9.5 46 182-233 178-223 (857)
177 PRK08118 topology modulation p 97.1 0.00026 5.6E-09 70.0 2.3 35 211-245 3-37 (167)
178 PRK06871 DNA polymerase III su 97.1 0.019 4.1E-07 62.9 16.6 176 190-389 10-200 (325)
179 PF13177 DNA_pol3_delta2: DNA 97.1 0.0052 1.1E-07 60.4 11.1 121 186-330 1-143 (162)
180 PF10443 RNA12: RNA12 protein; 97.1 0.055 1.2E-06 60.1 19.9 209 187-409 1-297 (431)
181 TIGR02639 ClpA ATP-dependent C 97.0 0.0034 7.3E-08 78.1 12.0 121 183-315 455-579 (731)
182 CHL00176 ftsH cell division pr 97.0 0.018 4E-07 69.3 17.3 177 182-384 183-386 (638)
183 COG1222 RPT1 ATP-dependent 26S 97.0 0.021 4.5E-07 60.9 15.3 200 183-410 152-391 (406)
184 KOG3665 ZYG-1-like serine/thre 97.0 0.00057 1.2E-08 82.7 4.4 112 557-686 144-264 (699)
185 TIGR02640 gas_vesic_GvpN gas v 97.0 0.016 3.6E-07 62.2 15.1 43 210-258 22-64 (262)
186 PRK06090 DNA polymerase III su 97.0 0.031 6.7E-07 61.0 17.1 93 288-392 107-201 (319)
187 PRK08058 DNA polymerase III su 97.0 0.01 2.3E-07 66.0 13.8 163 183-358 6-181 (329)
188 PRK07261 topology modulation p 96.9 0.0023 5E-08 63.7 7.3 35 211-245 2-36 (171)
189 PRK08939 primosomal protein Dn 96.9 0.0036 7.8E-08 68.3 9.2 122 186-328 135-260 (306)
190 PRK07952 DNA replication prote 96.9 0.0039 8.4E-08 65.3 8.9 102 210-328 100-204 (244)
191 PRK08181 transposase; Validate 96.9 0.0022 4.8E-08 68.2 7.1 101 210-329 107-209 (269)
192 PRK06526 transposase; Provisio 96.9 0.0016 3.5E-08 68.9 5.9 100 210-329 99-201 (254)
193 PF04665 Pox_A32: Poxvirus A32 96.8 0.0021 4.6E-08 66.3 6.4 36 210-248 14-49 (241)
194 COG2607 Predicted ATPase (AAA+ 96.8 0.014 3.1E-07 58.4 11.5 118 181-329 59-183 (287)
195 PRK12377 putative replication 96.8 0.002 4.3E-08 67.6 6.0 101 210-328 102-205 (248)
196 PRK07993 DNA polymerase III su 96.8 0.031 6.7E-07 61.9 15.6 177 190-389 10-201 (334)
197 KOG2123 Uncharacterized conser 96.8 0.0001 2.2E-09 74.4 -3.5 104 599-706 17-127 (388)
198 KOG1514 Origin recognition com 96.8 0.04 8.7E-07 64.0 16.3 173 182-359 396-589 (767)
199 KOG3665 ZYG-1-like serine/thre 96.8 0.00036 7.9E-09 84.3 0.1 87 595-683 142-231 (699)
200 TIGR01241 FtsH_fam ATP-depende 96.7 0.03 6.4E-07 66.6 16.0 178 182-385 55-259 (495)
201 PRK06921 hypothetical protein; 96.7 0.0047 1E-07 66.1 8.2 99 210-328 118-224 (266)
202 PF01695 IstB_IS21: IstB-like 96.7 0.0013 2.8E-08 65.7 3.7 101 210-329 48-150 (178)
203 PRK10865 protein disaggregatio 96.7 0.012 2.6E-07 74.0 13.1 137 183-328 569-720 (857)
204 COG1373 Predicted ATPase (AAA+ 96.7 0.019 4.1E-07 65.5 13.5 119 211-355 39-163 (398)
205 PRK12608 transcription termina 96.7 0.012 2.6E-07 64.7 11.1 101 191-298 120-229 (380)
206 PRK04296 thymidine kinase; Pro 96.7 0.003 6.6E-08 64.1 6.1 114 210-331 3-118 (190)
207 PRK09361 radB DNA repair and r 96.7 0.008 1.7E-07 63.3 9.5 47 207-257 21-67 (225)
208 PRK09183 transposase/IS protei 96.6 0.0056 1.2E-07 65.4 8.2 101 210-329 103-206 (259)
209 KOG0741 AAA+-type ATPase [Post 96.6 0.047 1E-06 60.9 15.0 149 207-382 536-704 (744)
210 COG0542 clpA ATP-binding subun 96.6 0.0042 9.2E-08 74.3 7.7 134 182-327 491-642 (786)
211 KOG1644 U2-associated snRNP A' 96.6 0.002 4.4E-08 62.4 4.1 102 602-706 43-150 (233)
212 KOG2982 Uncharacterized conser 96.6 0.0021 4.6E-08 65.9 4.4 86 598-683 68-157 (418)
213 COG2812 DnaX DNA polymerase II 96.6 0.0095 2.1E-07 68.5 10.0 187 182-386 16-214 (515)
214 smart00763 AAA_PrkA PrkA AAA d 96.6 0.002 4.4E-08 70.3 4.4 52 183-234 52-103 (361)
215 TIGR03345 VI_ClpV1 type VI sec 96.6 0.005 1.1E-07 77.1 8.4 137 182-328 566-718 (852)
216 TIGR03346 chaperone_ClpB ATP-d 96.6 0.01 2.2E-07 75.1 11.1 137 182-328 565-717 (852)
217 COG2884 FtsE Predicted ATPase 96.6 0.019 4E-07 55.5 9.9 123 210-336 29-204 (223)
218 PRK06964 DNA polymerase III su 96.5 0.082 1.8E-06 58.4 16.6 94 287-392 130-225 (342)
219 TIGR02237 recomb_radB DNA repa 96.5 0.0091 2E-07 62.1 8.7 49 207-259 10-58 (209)
220 COG0470 HolB ATPase involved i 96.5 0.015 3.1E-07 65.6 10.8 143 183-345 2-167 (325)
221 KOG1644 U2-associated snRNP A' 96.5 0.0026 5.6E-08 61.8 3.8 87 596-683 59-151 (233)
222 COG5238 RNA1 Ran GTPase-activa 96.4 0.0025 5.4E-08 64.5 3.3 87 597-683 26-131 (388)
223 PRK11889 flhF flagellar biosyn 96.4 0.02 4.4E-07 62.9 10.5 89 208-299 240-330 (436)
224 PF02562 PhoH: PhoH-like prote 96.4 0.0088 1.9E-07 60.3 7.3 132 187-331 5-158 (205)
225 cd01394 radB RadB. The archaea 96.4 0.016 3.4E-07 60.7 9.6 44 207-253 17-60 (218)
226 PF07728 AAA_5: AAA domain (dy 96.4 0.0018 3.9E-08 62.3 2.2 87 212-312 2-88 (139)
227 cd01393 recA_like RecA is a b 96.4 0.018 3.9E-07 60.7 10.0 92 207-299 17-124 (226)
228 PRK06835 DNA replication prote 96.3 0.0044 9.6E-08 68.1 4.9 102 210-328 184-288 (329)
229 KOG1909 Ran GTPase-activating 96.3 0.0011 2.4E-08 69.7 0.3 14 808-821 297-310 (382)
230 PF00448 SRP54: SRP54-type pro 96.3 0.0047 1E-07 62.6 4.7 87 209-298 1-92 (196)
231 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.026 5.6E-07 60.0 10.6 59 207-266 17-78 (235)
232 PRK05541 adenylylsulfate kinas 96.3 0.013 2.9E-07 58.9 7.9 36 208-246 6-41 (176)
233 TIGR02238 recomb_DMC1 meiotic 96.2 0.021 4.5E-07 62.6 9.7 72 192-268 83-157 (313)
234 PF08423 Rad51: Rad51; InterP 96.2 0.018 4E-07 61.3 9.1 69 193-266 26-97 (256)
235 KOG2228 Origin recognition com 96.2 0.032 6.9E-07 58.9 10.3 172 183-359 25-219 (408)
236 CHL00095 clpC Clp protease ATP 96.2 0.019 4E-07 72.5 10.6 138 182-328 509-661 (821)
237 PF07693 KAP_NTPase: KAP famil 96.2 0.1 2.3E-06 58.6 15.7 46 188-236 2-47 (325)
238 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.022 4.7E-07 54.9 8.4 117 210-330 3-139 (159)
239 KOG2739 Leucine-rich acidic nu 96.2 0.0022 4.7E-08 65.2 1.7 105 598-707 40-154 (260)
240 KOG0734 AAA+-type ATPase conta 96.2 0.025 5.3E-07 63.1 9.6 53 183-235 305-363 (752)
241 KOG2004 Mitochondrial ATP-depe 96.2 0.028 6.2E-07 65.1 10.4 107 181-300 410-516 (906)
242 TIGR02902 spore_lonB ATP-depen 96.2 0.016 3.6E-07 68.8 9.1 45 182-232 65-109 (531)
243 cd01120 RecA-like_NTPases RecA 96.1 0.018 3.9E-07 57.1 8.0 40 211-253 1-40 (165)
244 PRK04132 replication factor C 96.1 0.11 2.4E-06 64.0 15.8 154 217-390 574-729 (846)
245 PF13207 AAA_17: AAA domain; P 96.1 0.0042 9.2E-08 58.0 3.0 22 211-232 1-22 (121)
246 PRK11034 clpA ATP-dependent Cl 96.1 0.019 4.1E-07 70.5 9.3 120 183-314 459-582 (758)
247 PRK08699 DNA polymerase III su 96.1 0.052 1.1E-06 59.9 11.8 71 288-358 112-184 (325)
248 cd03247 ABCC_cytochrome_bd The 96.0 0.038 8.2E-07 55.7 9.8 117 210-333 29-161 (178)
249 PF14532 Sigma54_activ_2: Sigm 96.0 0.0046 1E-07 59.2 2.9 109 185-329 1-110 (138)
250 TIGR03499 FlhF flagellar biosy 96.0 0.023 4.9E-07 61.7 8.4 88 208-298 193-281 (282)
251 COG0542 clpA ATP-binding subun 96.0 0.024 5.1E-07 68.1 9.1 156 182-358 170-345 (786)
252 PF00560 LRR_1: Leucine Rich R 95.9 0.0041 9E-08 37.4 1.4 20 627-646 2-21 (22)
253 TIGR02012 tigrfam_recA protein 95.9 0.027 5.8E-07 61.3 8.6 85 207-299 53-143 (321)
254 TIGR01243 CDC48 AAA family ATP 95.9 0.065 1.4E-06 67.1 13.3 180 182-387 178-382 (733)
255 PRK06696 uridine kinase; Valid 95.9 0.0093 2E-07 62.5 5.0 45 186-233 2-46 (223)
256 CHL00195 ycf46 Ycf46; Provisio 95.9 0.048 1E-06 63.5 11.0 159 182-361 228-407 (489)
257 PTZ00494 tuzin-like protein; P 95.9 0.42 9E-06 52.9 17.0 167 177-358 366-543 (664)
258 COG1484 DnaC DNA replication p 95.9 0.012 2.6E-07 62.5 5.6 80 210-307 106-185 (254)
259 PRK13695 putative NTPase; Prov 95.9 0.0071 1.5E-07 60.7 3.7 24 211-234 2-25 (174)
260 TIGR01243 CDC48 AAA family ATP 95.9 0.098 2.1E-06 65.5 14.5 179 182-386 453-657 (733)
261 cd00983 recA RecA is a bacter 95.8 0.028 6.1E-07 61.2 8.4 84 207-298 53-142 (325)
262 PRK06067 flagellar accessory p 95.8 0.036 7.9E-07 58.7 9.2 87 207-299 23-130 (234)
263 PRK09354 recA recombinase A; P 95.8 0.03 6.6E-07 61.4 8.6 85 207-299 58-148 (349)
264 PRK14722 flhF flagellar biosyn 95.8 0.025 5.4E-07 62.9 8.0 87 210-299 138-225 (374)
265 KOG1969 DNA replication checkp 95.8 0.028 6E-07 65.4 8.4 83 207-310 324-408 (877)
266 cd03238 ABC_UvrA The excision 95.8 0.051 1.1E-06 54.0 9.4 122 210-343 22-161 (176)
267 PLN03187 meiotic recombination 95.8 0.047 1E-06 60.3 10.0 61 207-268 124-187 (344)
268 COG1223 Predicted ATPase (AAA+ 95.8 0.078 1.7E-06 53.7 10.4 156 182-359 121-297 (368)
269 KOG0733 Nuclear AAA ATPase (VC 95.8 0.15 3.3E-06 58.2 13.7 98 182-300 190-293 (802)
270 PF00158 Sigma54_activat: Sigm 95.8 0.034 7.4E-07 54.8 7.9 46 184-233 1-46 (168)
271 PRK12724 flagellar biosynthesi 95.7 0.026 5.7E-07 63.1 7.7 25 209-233 223-247 (432)
272 KOG0728 26S proteasome regulat 95.7 0.22 4.7E-06 50.0 13.1 155 184-359 148-331 (404)
273 COG1136 SalX ABC-type antimicr 95.7 0.074 1.6E-06 54.3 10.1 81 256-336 120-210 (226)
274 KOG1947 Leucine rich repeat pr 95.7 0.00046 9.9E-09 82.9 -7.0 60 1081-1141 380-443 (482)
275 PHA02244 ATPase-like protein 95.7 0.065 1.4E-06 58.8 10.1 22 211-232 121-142 (383)
276 PF13604 AAA_30: AAA domain; P 95.6 0.016 3.4E-07 59.1 5.2 109 210-331 19-133 (196)
277 cd03223 ABCD_peroxisomal_ALDP 95.6 0.083 1.8E-06 52.4 10.2 118 210-333 28-152 (166)
278 cd03228 ABCC_MRP_Like The MRP 95.6 0.055 1.2E-06 54.0 9.0 117 210-334 29-160 (171)
279 PRK15455 PrkA family serine pr 95.6 0.0083 1.8E-07 68.9 3.2 51 183-233 77-127 (644)
280 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.069 1.5E-06 51.4 9.2 104 210-333 27-131 (144)
281 TIGR02239 recomb_RAD51 DNA rep 95.6 0.053 1.1E-06 59.7 9.4 70 193-267 84-156 (316)
282 PRK05703 flhF flagellar biosyn 95.6 0.086 1.9E-06 60.6 11.4 86 209-298 221-308 (424)
283 COG1875 NYN ribonuclease and A 95.6 0.027 5.8E-07 60.1 6.6 138 185-331 227-390 (436)
284 COG0466 Lon ATP-dependent Lon 95.5 0.0097 2.1E-07 69.2 3.6 166 181-359 322-508 (782)
285 PRK12727 flagellar biosynthesi 95.5 0.049 1.1E-06 62.6 9.1 89 208-299 349-438 (559)
286 PLN03186 DNA repair protein RA 95.5 0.068 1.5E-06 59.1 9.9 61 207-268 121-184 (342)
287 cd03214 ABC_Iron-Siderophores_ 95.5 0.077 1.7E-06 53.5 9.6 118 210-332 26-161 (180)
288 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.082 1.8E-06 54.9 9.6 122 210-333 31-203 (254)
289 KOG0733 Nuclear AAA ATPase (VC 95.5 0.17 3.7E-06 57.8 12.7 155 209-386 545-718 (802)
290 COG0468 RecA RecA/RadA recombi 95.5 0.083 1.8E-06 56.1 9.9 88 207-298 58-150 (279)
291 cd01133 F1-ATPase_beta F1 ATP 95.5 0.071 1.5E-06 56.4 9.3 87 210-298 70-172 (274)
292 TIGR02236 recomb_radA DNA repa 95.5 0.097 2.1E-06 58.1 11.1 60 207-267 93-155 (310)
293 PRK12723 flagellar biosynthesi 95.4 0.09 2E-06 59.1 10.6 90 209-300 174-265 (388)
294 PLN00020 ribulose bisphosphate 95.4 0.027 5.9E-07 61.1 6.1 29 207-235 146-174 (413)
295 KOG0731 AAA+-type ATPase conta 95.4 0.25 5.3E-06 59.3 14.4 181 182-388 311-520 (774)
296 KOG0730 AAA+-type ATPase [Post 95.4 0.12 2.5E-06 60.0 11.3 134 207-361 466-617 (693)
297 PTZ00088 adenylate kinase 1; P 95.4 0.015 3.3E-07 60.4 4.1 23 211-233 8-30 (229)
298 cd00544 CobU Adenosylcobinamid 95.4 0.036 7.8E-07 54.6 6.5 79 212-298 2-82 (169)
299 COG0572 Udk Uridine kinase [Nu 95.3 0.024 5.1E-07 57.1 5.1 79 207-290 6-85 (218)
300 TIGR01650 PD_CobS cobaltochela 95.3 0.44 9.6E-06 51.8 15.0 61 183-257 46-106 (327)
301 COG1618 Predicted nucleotide k 95.3 0.016 3.4E-07 54.4 3.3 27 210-236 6-32 (179)
302 cd03222 ABC_RNaseL_inhibitor T 95.3 0.096 2.1E-06 52.2 9.2 102 210-333 26-136 (177)
303 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.098 2.1E-06 55.4 9.8 59 193-260 9-67 (237)
304 cd03216 ABC_Carb_Monos_I This 95.2 0.047 1E-06 53.9 6.9 116 210-333 27-146 (163)
305 KOG2739 Leucine-rich acidic nu 95.2 0.011 2.3E-07 60.4 2.2 63 994-1057 87-152 (260)
306 PRK05800 cobU adenosylcobinami 95.2 0.025 5.5E-07 55.9 4.8 80 211-298 3-85 (170)
307 PRK04301 radA DNA repair and r 95.2 0.12 2.7E-06 57.3 10.9 60 207-267 100-162 (317)
308 PRK14974 cell division protein 95.2 0.088 1.9E-06 58.0 9.5 90 208-300 139-233 (336)
309 PRK00771 signal recognition pa 95.2 0.077 1.7E-06 60.8 9.3 87 208-298 94-184 (437)
310 TIGR01360 aden_kin_iso1 adenyl 95.2 0.032 6.9E-07 56.9 5.8 25 208-232 2-26 (188)
311 KOG0739 AAA+-type ATPase [Post 95.2 1.7 3.6E-05 45.4 17.5 154 183-359 134-312 (439)
312 PF07724 AAA_2: AAA domain (Cd 95.2 0.019 4E-07 56.9 3.8 43 209-253 3-45 (171)
313 KOG1051 Chaperone HSP104 and r 95.2 0.086 1.9E-06 64.5 9.9 120 183-314 563-685 (898)
314 COG5238 RNA1 Ran GTPase-activa 95.1 0.0073 1.6E-07 61.2 0.8 194 621-843 26-252 (388)
315 PTZ00035 Rad51 protein; Provis 95.1 0.14 3.1E-06 56.8 11.0 71 192-267 105-178 (337)
316 COG1102 Cmk Cytidylate kinase 95.1 0.038 8.2E-07 51.9 5.2 45 211-269 2-46 (179)
317 PRK05439 pantothenate kinase; 95.1 0.1 2.2E-06 56.6 9.3 82 207-290 84-166 (311)
318 TIGR00708 cobA cob(I)alamin ad 95.1 0.14 3.1E-06 50.0 9.4 117 210-330 6-141 (173)
319 cd03246 ABCC_Protease_Secretio 95.1 0.082 1.8E-06 52.9 8.2 116 210-333 29-160 (173)
320 cd01131 PilT Pilus retraction 95.1 0.029 6.4E-07 57.4 5.0 110 210-332 2-112 (198)
321 PF12775 AAA_7: P-loop contain 95.0 0.03 6.5E-07 60.1 5.2 90 191-301 22-112 (272)
322 TIGR01817 nifA Nif-specific re 95.0 0.11 2.4E-06 62.6 10.6 136 181-329 195-341 (534)
323 KOG2123 Uncharacterized conser 95.0 0.0041 8.9E-08 63.2 -1.3 81 596-678 36-123 (388)
324 TIGR02974 phageshock_pspF psp 95.0 0.058 1.3E-06 59.9 7.6 45 184-232 1-45 (329)
325 PRK15429 formate hydrogenlyase 95.0 0.081 1.7E-06 65.8 9.6 134 182-329 376-521 (686)
326 PF00485 PRK: Phosphoribulokin 95.0 0.083 1.8E-06 54.0 8.2 80 211-293 1-87 (194)
327 cd03115 SRP The signal recogni 95.0 0.097 2.1E-06 52.4 8.5 23 211-233 2-24 (173)
328 PRK11608 pspF phage shock prot 95.0 0.064 1.4E-06 59.6 7.8 46 183-232 7-52 (326)
329 PRK07667 uridine kinase; Provi 95.0 0.03 6.6E-07 57.0 4.8 39 191-233 3-41 (193)
330 PRK07132 DNA polymerase III su 95.0 0.72 1.6E-05 50.2 15.5 156 209-391 18-184 (299)
331 COG2842 Uncharacterized ATPase 95.0 0.31 6.7E-06 51.2 12.0 97 210-315 95-191 (297)
332 cd02025 PanK Pantothenate kina 94.9 0.074 1.6E-06 55.3 7.6 23 211-233 1-23 (220)
333 PRK12726 flagellar biosynthesi 94.9 0.18 3.9E-06 55.6 10.6 90 208-300 205-296 (407)
334 PTZ00301 uridine kinase; Provi 94.9 0.036 7.9E-07 56.8 5.1 25 209-233 3-27 (210)
335 KOG2035 Replication factor C, 94.9 0.094 2E-06 53.8 7.8 205 184-410 15-257 (351)
336 TIGR00554 panK_bact pantothena 94.9 0.1 2.2E-06 56.2 8.6 25 207-231 60-84 (290)
337 KOG0735 AAA+-type ATPase [Post 94.9 0.055 1.2E-06 62.7 6.7 73 208-299 430-504 (952)
338 COG0563 Adk Adenylate kinase a 94.8 0.043 9.3E-07 54.6 5.3 23 211-233 2-24 (178)
339 cd03230 ABC_DR_subfamily_A Thi 94.8 0.12 2.7E-06 51.6 8.7 117 210-333 27-159 (173)
340 KOG0736 Peroxisome assembly fa 94.8 0.28 6E-06 57.8 12.3 153 183-356 673-853 (953)
341 KOG2170 ATPase of the AAA+ sup 94.8 0.07 1.5E-06 55.6 6.7 116 182-314 82-203 (344)
342 cd01121 Sms Sms (bacterial rad 94.8 0.15 3.3E-06 57.3 10.1 95 191-298 68-167 (372)
343 cd01122 GP4d_helicase GP4d_hel 94.7 0.22 4.7E-06 54.2 11.0 52 209-264 30-81 (271)
344 KOG0744 AAA+-type ATPase [Post 94.7 0.061 1.3E-06 56.4 6.0 80 209-299 177-260 (423)
345 KOG2982 Uncharacterized conser 94.7 0.04 8.8E-07 56.9 4.7 65 593-658 89-156 (418)
346 PRK13531 regulatory ATPase Rav 94.7 0.033 7.2E-07 63.4 4.6 42 183-232 21-62 (498)
347 cd01125 repA Hexameric Replica 94.7 0.18 3.9E-06 53.6 10.0 144 210-353 2-198 (239)
348 PF00006 ATP-synt_ab: ATP synt 94.6 0.11 2.4E-06 53.3 7.8 84 210-298 16-114 (215)
349 COG0396 sufC Cysteine desulfur 94.6 0.27 5.8E-06 49.5 10.0 65 278-342 151-217 (251)
350 PF13238 AAA_18: AAA domain; P 94.6 0.024 5.2E-07 53.6 2.7 21 212-232 1-21 (129)
351 PRK10867 signal recognition pa 94.6 0.095 2.1E-06 59.8 7.9 26 208-233 99-124 (433)
352 TIGR02858 spore_III_AA stage I 94.6 0.39 8.4E-06 51.4 12.1 124 191-333 98-233 (270)
353 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.094 2E-06 53.1 7.2 22 211-232 1-22 (183)
354 PRK04328 hypothetical protein; 94.6 0.12 2.6E-06 55.0 8.3 42 207-251 21-62 (249)
355 COG1428 Deoxynucleoside kinase 94.6 0.025 5.4E-07 56.1 2.7 26 209-234 4-29 (216)
356 PF03308 ArgK: ArgK protein; 94.5 0.059 1.3E-06 55.6 5.5 64 190-258 14-77 (266)
357 COG0464 SpoVK ATPases of the A 94.5 0.37 8.1E-06 57.5 13.3 133 207-360 274-424 (494)
358 TIGR00390 hslU ATP-dependent p 94.5 0.083 1.8E-06 58.9 7.0 84 182-265 12-104 (441)
359 COG4088 Predicted nucleotide k 94.5 0.021 4.5E-07 55.7 2.1 26 210-235 2-27 (261)
360 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.074 1.6E-06 55.0 6.4 120 210-335 30-160 (213)
361 TIGR00959 ffh signal recogniti 94.5 0.1 2.2E-06 59.5 8.0 90 208-299 98-192 (428)
362 TIGR00064 ftsY signal recognit 94.5 0.12 2.5E-06 55.7 7.9 89 207-299 70-164 (272)
363 cd01124 KaiC KaiC is a circadi 94.5 0.08 1.7E-06 53.9 6.5 37 212-251 2-38 (187)
364 COG4608 AppF ABC-type oligopep 94.4 0.13 2.9E-06 53.4 7.8 125 209-336 39-177 (268)
365 PRK08533 flagellar accessory p 94.4 0.18 3.9E-06 52.9 9.1 49 208-261 23-71 (230)
366 KOG0473 Leucine-rich repeat pr 94.4 0.0023 5.1E-08 63.1 -4.5 87 597-685 38-124 (326)
367 TIGR00150 HI0065_YjeE ATPase, 94.4 0.056 1.2E-06 50.4 4.6 42 189-234 6-47 (133)
368 PRK13948 shikimate kinase; Pro 94.4 0.28 6.1E-06 49.0 10.0 26 208-233 9-34 (182)
369 PF13306 LRR_5: Leucine rich r 94.4 0.059 1.3E-06 50.9 5.0 84 595-682 6-91 (129)
370 cd02019 NK Nucleoside/nucleoti 94.4 0.029 6.2E-07 45.9 2.4 22 211-232 1-22 (69)
371 PRK09270 nucleoside triphospha 94.4 0.15 3.2E-06 53.8 8.4 28 207-234 31-58 (229)
372 PRK06547 hypothetical protein; 94.4 0.054 1.2E-06 53.7 4.7 26 207-232 13-38 (172)
373 KOG1947 Leucine rich repeat pr 94.4 0.0072 1.6E-07 72.5 -1.8 208 929-1141 187-417 (482)
374 PRK05022 anaerobic nitric oxid 94.4 0.11 2.4E-06 61.9 8.2 135 181-329 186-332 (509)
375 COG1419 FlhF Flagellar GTP-bin 94.3 0.24 5.3E-06 54.7 9.9 103 209-315 203-309 (407)
376 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.16 3.4E-06 52.3 8.2 121 210-333 27-168 (200)
377 PRK08233 hypothetical protein; 94.3 0.035 7.5E-07 56.3 3.3 25 209-233 3-27 (182)
378 TIGR01069 mutS2 MutS2 family p 94.3 0.049 1.1E-06 67.4 5.1 186 209-409 322-518 (771)
379 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.15 3.2E-06 54.7 8.2 42 207-251 34-75 (259)
380 PRK06217 hypothetical protein; 94.2 0.068 1.5E-06 54.0 5.3 36 211-246 3-38 (183)
381 PRK13539 cytochrome c biogenes 94.2 0.21 4.6E-06 51.7 9.0 63 282-347 138-202 (207)
382 COG1703 ArgK Putative periplas 94.2 0.068 1.5E-06 55.8 5.1 64 192-260 38-101 (323)
383 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.24 5.3E-06 52.2 9.6 42 207-251 18-59 (229)
384 COG1126 GlnQ ABC-type polar am 94.1 0.41 8.9E-06 47.8 10.0 122 210-335 29-202 (240)
385 PF13671 AAA_33: AAA domain; P 94.1 0.038 8.3E-07 53.3 3.1 21 211-231 1-21 (143)
386 TIGR00235 udk uridine kinase. 94.1 0.039 8.5E-07 57.1 3.4 26 207-232 4-29 (207)
387 PRK05480 uridine/cytidine kina 94.1 0.04 8.6E-07 57.2 3.4 27 207-233 4-30 (209)
388 PRK05986 cob(I)alamin adenolsy 94.1 0.21 4.5E-06 49.6 8.1 118 210-330 23-159 (191)
389 PRK05201 hslU ATP-dependent pr 94.1 0.1 2.2E-06 58.2 6.6 84 182-265 15-107 (443)
390 PRK00889 adenylylsulfate kinas 94.0 0.11 2.4E-06 52.1 6.3 25 209-233 4-28 (175)
391 COG4181 Predicted ABC-type tra 94.0 0.53 1.1E-05 44.9 10.0 86 251-336 120-214 (228)
392 cd03282 ABC_MSH4_euk MutS4 hom 94.0 0.064 1.4E-06 54.9 4.6 119 210-336 30-158 (204)
393 PRK06731 flhF flagellar biosyn 94.0 0.26 5.6E-06 52.6 9.2 88 210-300 76-165 (270)
394 PF07726 AAA_3: ATPase family 94.0 0.057 1.2E-06 49.3 3.6 22 212-233 2-23 (131)
395 PHA00729 NTP-binding motif con 94.0 0.068 1.5E-06 54.6 4.6 25 208-232 16-40 (226)
396 cd03229 ABC_Class3 This class 94.0 0.13 2.8E-06 51.8 6.7 23 210-232 27-49 (178)
397 PRK14723 flhF flagellar biosyn 94.0 0.29 6.4E-06 59.4 10.6 88 209-299 185-273 (767)
398 KOG1532 GTPase XAB1, interacts 94.0 0.17 3.7E-06 51.7 7.3 62 207-269 17-87 (366)
399 cd02027 APSK Adenosine 5'-phos 94.0 0.11 2.3E-06 50.4 5.8 23 211-233 1-23 (149)
400 PF00560 LRR_1: Leucine Rich R 94.0 0.027 5.8E-07 33.9 1.0 21 649-670 1-21 (22)
401 PRK13538 cytochrome c biogenes 93.9 0.35 7.7E-06 49.9 10.1 23 210-232 28-50 (204)
402 PRK10733 hflB ATP-dependent me 93.9 0.36 7.8E-06 59.1 11.6 157 183-360 153-336 (644)
403 PF13481 AAA_25: AAA domain; P 93.9 0.17 3.6E-06 51.8 7.6 42 210-251 33-81 (193)
404 cd03369 ABCC_NFT1 Domain 2 of 93.9 0.61 1.3E-05 48.3 11.8 23 210-232 35-57 (207)
405 PRK06762 hypothetical protein; 93.9 0.046 9.9E-07 54.4 3.1 23 210-232 3-25 (166)
406 PRK06995 flhF flagellar biosyn 93.8 0.31 6.8E-06 56.3 10.1 87 209-298 256-343 (484)
407 PF01583 APS_kinase: Adenylyls 93.8 0.03 6.5E-07 53.7 1.6 26 210-235 3-28 (156)
408 PF03969 AFG1_ATPase: AFG1-lik 93.8 0.19 4.2E-06 56.2 8.1 108 208-331 61-169 (362)
409 PRK14721 flhF flagellar biosyn 93.8 0.26 5.6E-06 56.0 9.2 88 208-298 190-278 (420)
410 COG4618 ArpD ABC-type protease 93.8 0.44 9.5E-06 53.7 10.6 22 210-231 363-384 (580)
411 PRK12678 transcription termina 93.7 0.1 2.2E-06 60.1 5.8 88 209-298 416-512 (672)
412 PRK13540 cytochrome c biogenes 93.7 0.34 7.3E-06 49.8 9.4 24 210-233 28-51 (200)
413 PRK13949 shikimate kinase; Pro 93.7 0.35 7.7E-06 47.9 9.1 23 211-233 3-25 (169)
414 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.14 3.1E-06 50.3 6.3 118 210-334 26-145 (157)
415 cd01135 V_A-ATPase_B V/A-type 93.7 0.38 8.3E-06 50.8 9.6 90 210-299 70-176 (276)
416 cd03263 ABC_subfamily_A The AB 93.7 0.33 7.1E-06 50.9 9.4 23 210-232 29-51 (220)
417 PRK08972 fliI flagellum-specif 93.7 0.25 5.5E-06 55.8 8.8 85 209-298 162-261 (444)
418 PF00154 RecA: recA bacterial 93.6 0.12 2.7E-06 56.0 6.1 84 207-298 51-140 (322)
419 PF06745 KaiC: KaiC; InterPro 93.6 0.079 1.7E-06 55.8 4.7 44 207-252 17-60 (226)
420 PRK09544 znuC high-affinity zi 93.6 0.33 7.2E-06 51.8 9.4 23 210-232 31-53 (251)
421 PRK05917 DNA polymerase III su 93.6 0.8 1.7E-05 49.1 12.0 130 191-346 6-154 (290)
422 cd03232 ABC_PDR_domain2 The pl 93.6 0.3 6.6E-06 49.8 8.7 22 210-231 34-55 (192)
423 cd03235 ABC_Metallic_Cations A 93.6 0.34 7.3E-06 50.5 9.3 23 210-232 26-48 (213)
424 cd03215 ABC_Carb_Monos_II This 93.6 0.55 1.2E-05 47.4 10.5 24 210-233 27-50 (182)
425 PRK05973 replicative DNA helic 93.5 0.35 7.6E-06 50.4 9.0 48 208-260 63-110 (237)
426 PF08298 AAA_PrkA: PrkA AAA do 93.5 0.083 1.8E-06 57.3 4.5 52 182-233 61-112 (358)
427 CHL00206 ycf2 Ycf2; Provisiona 93.5 0.96 2.1E-05 59.6 14.3 28 208-235 1629-1656(2281)
428 PRK11823 DNA repair protein Ra 93.5 0.3 6.5E-06 56.7 9.4 54 191-251 66-119 (446)
429 cd03245 ABCC_bacteriocin_expor 93.5 0.45 9.8E-06 49.8 10.1 23 210-232 31-53 (220)
430 PRK00279 adk adenylate kinase; 93.5 0.11 2.5E-06 54.0 5.5 22 211-232 2-23 (215)
431 cd03244 ABCC_MRP_domain2 Domai 93.4 0.5 1.1E-05 49.5 10.4 23 210-232 31-53 (221)
432 PRK13543 cytochrome c biogenes 93.4 0.56 1.2E-05 48.8 10.5 24 210-233 38-61 (214)
433 PRK06002 fliI flagellum-specif 93.4 0.38 8.3E-06 54.8 9.7 85 210-298 166-263 (450)
434 PRK03839 putative kinase; Prov 93.4 0.056 1.2E-06 54.5 2.9 23 211-233 2-24 (180)
435 COG3598 RepA RecA-family ATPas 93.3 0.24 5.3E-06 52.1 7.3 60 210-269 90-157 (402)
436 PF00910 RNA_helicase: RNA hel 93.3 0.046 9.9E-07 49.5 1.9 22 212-233 1-22 (107)
437 PF13306 LRR_5: Leucine rich r 93.3 0.15 3.2E-06 48.1 5.5 84 593-681 27-112 (129)
438 COG2401 ABC-type ATPase fused 93.3 0.089 1.9E-06 57.1 4.2 160 183-343 372-582 (593)
439 TIGR00416 sms DNA repair prote 93.3 0.42 9.1E-06 55.6 10.2 56 188-250 77-132 (454)
440 PRK09519 recA DNA recombinatio 93.3 0.29 6.3E-06 59.6 9.1 85 207-299 58-148 (790)
441 TIGR03771 anch_rpt_ABC anchore 93.3 0.53 1.2E-05 49.3 10.2 23 210-232 7-29 (223)
442 PRK04040 adenylate kinase; Pro 93.3 0.065 1.4E-06 54.1 3.1 24 210-233 3-26 (188)
443 PRK14527 adenylate kinase; Pro 93.2 0.093 2E-06 53.5 4.3 26 208-233 5-30 (191)
444 COG0194 Gmk Guanylate kinase [ 93.2 0.096 2.1E-06 50.9 3.9 24 210-233 5-28 (191)
445 PRK00625 shikimate kinase; Pro 93.2 0.057 1.2E-06 53.5 2.5 23 211-233 2-24 (173)
446 cd03233 ABC_PDR_domain1 The pl 93.2 0.61 1.3E-05 48.0 10.2 24 210-233 34-57 (202)
447 cd03237 ABC_RNaseL_inhibitor_d 93.2 0.42 9.2E-06 50.8 9.2 125 210-334 26-181 (246)
448 TIGR03522 GldA_ABC_ATP gliding 93.2 0.59 1.3E-05 51.5 10.7 23 210-232 29-51 (301)
449 PRK09580 sufC cysteine desulfu 93.1 0.47 1E-05 50.8 9.8 23 210-232 28-50 (248)
450 PF03205 MobB: Molybdopterin g 93.1 0.1 2.2E-06 49.7 4.0 39 210-250 1-39 (140)
451 cd03253 ABCC_ATM1_transporter 93.1 0.52 1.1E-05 50.0 10.0 61 281-343 147-208 (236)
452 cd03251 ABCC_MsbA MsbA is an e 93.1 0.83 1.8E-05 48.4 11.5 23 210-232 29-51 (234)
453 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.1 0.48 1E-05 49.7 9.5 24 210-233 49-72 (224)
454 cd03226 ABC_cobalt_CbiO_domain 93.1 0.44 9.4E-06 49.3 9.0 23 210-232 27-49 (205)
455 cd03254 ABCC_Glucan_exporter_l 93.0 0.72 1.6E-05 48.6 10.9 23 210-232 30-52 (229)
456 COG1224 TIP49 DNA helicase TIP 93.0 0.15 3.2E-06 54.5 5.2 51 181-235 38-91 (450)
457 cd03231 ABC_CcmA_heme_exporter 93.0 0.52 1.1E-05 48.4 9.4 23 210-232 27-49 (201)
458 PRK10820 DNA-binding transcrip 93.0 0.22 4.8E-06 59.4 7.5 47 182-232 204-250 (520)
459 PRK13765 ATP-dependent proteas 92.9 0.16 3.5E-06 61.1 6.2 76 182-268 31-106 (637)
460 PF10236 DAP3: Mitochondrial r 92.9 2.9 6.3E-05 46.0 15.6 49 340-389 258-306 (309)
461 TIGR03575 selen_PSTK_euk L-ser 92.9 0.23 5E-06 54.7 6.9 23 212-234 2-24 (340)
462 PRK00409 recombination and DNA 92.9 0.087 1.9E-06 65.5 4.1 187 208-409 326-523 (782)
463 cd03213 ABCG_EPDR ABCG transpo 92.9 0.5 1.1E-05 48.2 9.1 24 210-233 36-59 (194)
464 PRK08149 ATP synthase SpaL; Va 92.9 0.49 1.1E-05 53.8 9.6 85 210-299 152-251 (428)
465 PHA02774 E1; Provisional 92.9 0.29 6.3E-06 56.8 7.9 48 191-248 421-468 (613)
466 cd03264 ABC_drug_resistance_li 92.9 0.44 9.6E-06 49.5 8.8 22 211-232 27-48 (211)
467 COG3640 CooC CO dehydrogenase 92.9 0.14 3E-06 51.6 4.5 43 211-255 2-44 (255)
468 PRK09280 F0F1 ATP synthase sub 92.8 0.38 8.1E-06 55.0 8.6 87 210-298 145-247 (463)
469 cd03250 ABCC_MRP_domain1 Domai 92.8 1.3 2.8E-05 45.7 12.2 24 210-233 32-55 (204)
470 COG0714 MoxR-like ATPases [Gen 92.8 0.19 4E-06 56.3 6.3 65 183-261 25-89 (329)
471 KOG0079 GTP-binding protein H- 92.8 0.12 2.7E-06 47.1 3.7 82 212-300 11-92 (198)
472 KOG0743 AAA+-type ATPase [Post 92.8 1.4 3.1E-05 49.2 12.5 24 210-233 236-259 (457)
473 PRK10463 hydrogenase nickel in 92.7 0.25 5.3E-06 52.8 6.6 27 207-233 102-128 (290)
474 PF13504 LRR_7: Leucine rich r 92.7 0.069 1.5E-06 29.7 1.3 14 627-640 3-16 (17)
475 PRK07594 type III secretion sy 92.7 0.46 9.9E-06 54.1 9.1 85 209-298 155-254 (433)
476 cd01428 ADK Adenylate kinase ( 92.7 0.087 1.9E-06 54.0 3.2 21 212-232 2-22 (194)
477 cd02024 NRK1 Nicotinamide ribo 92.7 0.071 1.5E-06 53.4 2.4 22 211-232 1-22 (187)
478 PF06309 Torsin: Torsin; Inte 92.7 0.38 8.3E-06 43.9 6.7 47 183-232 26-76 (127)
479 PTZ00185 ATPase alpha subunit; 92.6 0.67 1.5E-05 53.0 10.1 89 210-299 190-299 (574)
480 PRK08927 fliI flagellum-specif 92.6 0.55 1.2E-05 53.5 9.5 85 209-298 158-257 (442)
481 TIGR01425 SRP54_euk signal rec 92.6 0.34 7.3E-06 55.1 7.9 27 208-234 99-125 (429)
482 KOG3864 Uncharacterized conser 92.6 0.029 6.3E-07 54.9 -0.5 70 1042-1116 119-190 (221)
483 PRK10875 recD exonuclease V su 92.6 0.47 1E-05 57.0 9.5 120 210-332 168-305 (615)
484 cd02023 UMPK Uridine monophosp 92.6 0.074 1.6E-06 54.7 2.4 22 211-232 1-22 (198)
485 COG1120 FepC ABC-type cobalami 92.6 0.51 1.1E-05 49.4 8.5 23 209-231 28-50 (258)
486 PF03215 Rad17: Rad17 cell cyc 92.5 0.14 3E-06 60.1 4.8 60 182-247 19-78 (519)
487 PF08433 KTI12: Chromatin asso 92.5 0.11 2.3E-06 55.6 3.7 25 210-234 2-26 (270)
488 PRK00131 aroK shikimate kinase 92.5 0.091 2E-06 52.8 3.0 24 210-233 5-28 (175)
489 TIGR02322 phosphon_PhnN phosph 92.5 0.09 2E-06 53.0 3.0 24 210-233 2-25 (179)
490 TIGR03498 FliI_clade3 flagella 92.5 0.51 1.1E-05 53.7 9.1 84 210-298 141-239 (418)
491 COG1936 Predicted nucleotide k 92.5 0.089 1.9E-06 50.4 2.5 20 211-230 2-21 (180)
492 cd01134 V_A-ATPase_A V/A-type 92.5 0.73 1.6E-05 50.3 9.7 48 210-262 158-206 (369)
493 cd01132 F1_ATPase_alpha F1 ATP 92.4 0.31 6.7E-06 51.5 6.8 85 210-299 70-171 (274)
494 cd03252 ABCC_Hemolysin The ABC 92.4 0.98 2.1E-05 47.9 10.9 23 210-232 29-51 (237)
495 COG2019 AdkA Archaeal adenylat 92.4 0.11 2.3E-06 49.3 2.9 24 209-232 4-27 (189)
496 TIGR02655 circ_KaiC circadian 92.4 0.39 8.5E-06 56.7 8.5 68 190-267 248-315 (484)
497 TIGR01193 bacteriocin_ABC ABC- 92.4 0.6 1.3E-05 58.7 10.7 23 210-232 501-523 (708)
498 PRK13647 cbiO cobalt transport 92.4 0.69 1.5E-05 50.2 9.8 23 210-232 32-54 (274)
499 PRK12597 F0F1 ATP synthase sub 92.4 0.29 6.3E-06 56.1 7.1 87 210-298 144-246 (461)
500 KOG0729 26S proteasome regulat 92.4 0.34 7.3E-06 49.2 6.5 50 183-232 178-234 (435)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-83 Score=772.87 Aligned_cols=647 Identities=28% Similarity=0.433 Sum_probs=505.1
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhhhhhhhhhh
Q 047556 7 LLSALFQVIFDRLAPHGELLNFVRQLGGGVDSELKKWKNTLMMIQAVLSDAEEKQLTDQAVKIWLDNLRDLAYDVEDNLD 86 (1175)
Q Consensus 7 ~~s~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~eD~ld 86 (1175)
.++..++.+.+.+..+ .+.+. ++++.+..|++.|..+++++++++.++.....++.|...+++++|++||.++
T Consensus 4 ~~s~~~~~~~~~l~~~---~~~~~----~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 4 CVSFGVEKLDQLLNRE---SECLD----GKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred EEEEehhhHHHHHHHH---HHHHh----chHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544433 33333 6678999999999999999999999988888899999999999999999999
Q ss_pred hhhhhHHHHHhhhccCCcccccchhcccccccccccccccccchhhHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCC
Q 047556 87 VFATSALEHKLIADHDHEASTSKVQRLLPVAFFRCFNRYTVKFNHSMRSSVKDITGRLEELCKQRIELGLQLTPGGASSN 166 (1175)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1175)
.|......++... . ........+.+.. ..+++.....+..+.+++..+.+....++.+.........
T Consensus 77 ~~~v~~~~~~~~~--~-l~~~~~~~~~~c~----------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~ 143 (889)
T KOG4658|consen 77 LFLVEEIERKAND--L-LSTRSVERQRLCL----------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES 143 (889)
T ss_pred HHHHHHHHHHHhH--H-hhhhHHHHHHHhh----------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc
Confidence 9998876654332 0 0001111121111 1345666777777777777777777777654322111100
Q ss_pred CCCCCCCCCCCCCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccc-ccccccceEEE
Q 047556 167 TAAQRRPPSSSVPTERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKE-VETFKFDIKAW 245 (1175)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~w 245 (1175)
..+....+..+...... ||.+..++++++.|...+ ..+++|+||||+||||||+.++|+.. +.. +|+.++|
T Consensus 144 ~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~-~Fd~~iW 215 (889)
T KOG4658|consen 144 LDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGN-HFDGVIW 215 (889)
T ss_pred ccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcc-cCceEEE
Confidence 11111223333333334 999999999999998753 28999999999999999999999987 666 9999999
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCc--cchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE
Q 047556 246 VCVSEDFDVLSISRAILESITYSSCDL--KALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV 323 (1175)
Q Consensus 246 v~~s~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1175)
|+||+.++...++++|++.++...... ...++.+..|.+.|+++||+||+||||+. .+|+.+..++|...+||+|+
T Consensus 216 V~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~Kvv 293 (889)
T KOG4658|consen 216 VVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVV 293 (889)
T ss_pred EEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEE
Confidence 999999999999999999998754332 33478889999999999999999999986 46999999999999999999
Q ss_pred EecCChhhhhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCC-CH
Q 047556 324 VTTRHSHVAST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSK-RH 401 (1175)
Q Consensus 324 vTtr~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~ 401 (1175)
+|||++.|+.. +++...+++++|+.+|||+||.+.++.... ...+...++|++++++|+|+|||++++|+.|+.+ +.
T Consensus 294 lTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~ 372 (889)
T KOG4658|consen 294 LTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTV 372 (889)
T ss_pred EEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcH
Confidence 99999999998 888899999999999999999999986543 2334488999999999999999999999999999 88
Q ss_pred HHHHHHHhhcccCCCC-----CCCchHHHHHhhhcCChhhhhhhhhhccCCCCcccChhHHHHHHHHccCccccccCCCC
Q 047556 402 DAWDEILNSKILDLPQ-----RNGILPALSLSYHYLPSHLKRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQ 476 (1175)
Q Consensus 402 ~~w~~~~~~~~~~~~~-----~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 476 (1175)
.+|+++.+...+.+.. .+.|.+++++|||.||+++|.||+|||+||+||+|+.+.|+.+|+||||+.+.... ..
T Consensus 373 ~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~-~~ 451 (889)
T KOG4658|consen 373 QEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGG-ET 451 (889)
T ss_pred HHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccc-cc
Confidence 8999999866554222 26789999999999999999999999999999999999999999999999985544 88
Q ss_pred HHHHHHHHHHHHHhCCCccccC--CCCCceEEchhHHHHHHHHhc-----cccceeccc-----ccccccccceeEEEee
Q 047556 477 PEVLGREYFHDLLSRSILQPSS--SNNSKFVMHDLVHDLAQLVSG-----QTSFRWEEA-----NKSISSVQKSRHFSYD 544 (1175)
Q Consensus 477 ~~~~~~~~~~~L~~~sll~~~~--~~~~~~~mHdlv~~~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~r~l~~~ 544 (1175)
++++|..|+.+|++++|+.... .....|+|||+||++|.++++ ++......+ ......+..+|++++.
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 9999999999999999999875 245789999999999999999 555444432 1112234567888887
Q ss_pred ccCCCcchhhHhhhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccc-cccCCCCccCC
Q 047556 545 CSVNDGNSMLEVMHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSY-ITELPKGSMSG 623 (1175)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~-i~~l~~~~~~~ 623 (1175)
+.... ....-.+.++|+||....+.. + .......+|..++.||+|||++|. +..+| ..|++
T Consensus 532 ~~~~~---~~~~~~~~~~L~tLll~~n~~-~-------------l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~ 593 (889)
T KOG4658|consen 532 NNKIE---HIAGSSENPKLRTLLLQRNSD-W-------------LLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGE 593 (889)
T ss_pred ccchh---hccCCCCCCccceEEEeecch-h-------------hhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhh
Confidence 75321 112224556799998877531 0 133456678999999999999875 78888 89999
Q ss_pred cccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCccCCCCCCccccCc
Q 047556 624 WKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFGMKELKNLQALSN 703 (1175)
Q Consensus 624 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~ 703 (1175)
|.|||||+|+++.|..+|.++++|++|.+||+..+..+..+|..+..|.+||+|.+.... .......++.+.+|++|..
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLEN 672 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhh
Confidence 999999999999999999999999999999999998777778777889999999987654 1111222444444554443
Q ss_pred e
Q 047556 704 F 704 (1175)
Q Consensus 704 ~ 704 (1175)
.
T Consensus 673 l 673 (889)
T KOG4658|consen 673 L 673 (889)
T ss_pred h
Confidence 3
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.3e-63 Score=633.46 Aligned_cols=697 Identities=20% Similarity=0.279 Sum_probs=482.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEe---CCC------
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCV---SED------ 251 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~------ 251 (1175)
.+.+|||+..++++..++.... +++++|+||||||+||||||+++|+... . .|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~-~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSRLS--R-QFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred cccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHHHh--h-cCCeEEEeeccccccchhhccc
Confidence 4569999999999999886432 5679999999999999999999998643 3 7888887742 111
Q ss_pred -----CC-HHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEe
Q 047556 252 -----FD-VLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVT 325 (1175)
Q Consensus 252 -----~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 325 (1175)
+. ...++++++.++...... .... ...+++.++++|+||||||||+ ..+|+.+.....+.++||+||||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~--~~~~-~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDI--KIYH-LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCc--ccCC-HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEE
Confidence 01 123444555554332211 0101 1456778899999999999976 46788888777777899999999
Q ss_pred cCChhhhhhcCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCHHHHH
Q 047556 326 TRHSHVASTMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSKRHDAWD 405 (1175)
Q Consensus 326 tr~~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~ 405 (1175)
||+++++..++..++|+|+.|+++|||+||+++||+... +++...+++++|+++|+|+||||+++|++|++++..+|+
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~ 408 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHH
Confidence 999999988777889999999999999999999997543 345678899999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCchHHHHHhhhcCCh-hhhhhhhhhccCCCCcccChhHHHHHHHHccCccccccCCCCHHHHHHHH
Q 047556 406 EILNSKILDLPQRNGILPALSLSYHYLPS-HLKRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQPEVLGREY 484 (1175)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~ 484 (1175)
.++++..... ...|..+|++||+.|++ ..|.||+++|+|+.+..++ .+..|++.+.... +..
T Consensus 409 ~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------------~~~ 471 (1153)
T PLN03210 409 DMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------------NIG 471 (1153)
T ss_pred HHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc------------hhC
Confidence 9998754432 25799999999999987 5999999999999887654 3667877764432 223
Q ss_pred HHHHHhCCCccccCCCCCceEEchhHHHHHHHHhcccc-------ceecccc-----cccccccceeEEEeeccCCCcc-
Q 047556 485 FHDLLSRSILQPSSSNNSKFVMHDLVHDLAQLVSGQTS-------FRWEEAN-----KSISSVQKSRHFSYDCSVNDGN- 551 (1175)
Q Consensus 485 ~~~L~~~sll~~~~~~~~~~~mHdlv~~~~~~~~~~~~-------~~~~~~~-----~~~~~~~~~r~l~~~~~~~~~~- 551 (1175)
++.|+++|||+.. ...+.|||++|+||+++++++. +.+.... ........++++++........
T Consensus 472 l~~L~~ksLi~~~---~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~ 548 (1153)
T PLN03210 472 LKNLVDKSLIHVR---EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH 548 (1153)
T ss_pred hHHHHhcCCEEEc---CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee
Confidence 8899999999875 3579999999999999987664 2221110 0011234567777654432211
Q ss_pred hhhHhhhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcC-CCccEEEecccccccCCCCccCCcccccEE
Q 047556 552 SMLEVMHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKC-RKLRVLSLSRSYITELPKGSMSGWKHLRYL 630 (1175)
Q Consensus 552 ~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L 630 (1175)
....++..|.+|+.|.+........ ... ...++..|..+ .+||.|.+.++.+..+| ..| .+.+|+.|
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~---------~~~-~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP-~~f-~~~~L~~L 616 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQK---------KEV-RWHLPEGFDYLPPKLRLLRWDKYPLRCMP-SNF-RPENLVKL 616 (1153)
T ss_pred ecHHHHhcCccccEEEEeccccccc---------ccc-eeecCcchhhcCcccEEEEecCCCCCCCC-CcC-CccCCcEE
Confidence 1235577888999887754321000 000 11122233443 57999999999999998 455 57899999
Q ss_pred EecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCccCCCCCCccccCceeeccCC
Q 047556 631 NLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGT 710 (1175)
Q Consensus 631 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~ 710 (1175)
+|+++.+..+|..+..+++|++|+|++|..+..+|. ++.+++|++|++++|..+..+|..+++|++|+.|++..+
T Consensus 617 ~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c---- 691 (1153)
T PLN03210 617 QMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC---- 691 (1153)
T ss_pred ECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC----
Confidence 999999999999999999999999999988899986 889999999999999888899999999999998865433
Q ss_pred CccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEE
Q 047556 711 RSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLT 790 (1175)
Q Consensus 711 ~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 790 (1175)
.++..+... ..+++|+. |+
T Consensus 692 --------~~L~~Lp~~--------------------i~l~sL~~---------------------------------L~ 710 (1153)
T PLN03210 692 --------ENLEILPTG--------------------INLKSLYR---------------------------------LN 710 (1153)
T ss_pred --------CCcCccCCc--------------------CCCCCCCE---------------------------------Ee
Confidence 222222100 01122333 33
Q ss_pred EeccC-CCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCccc
Q 047556 791 INGYG-GKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLT 869 (1175)
Q Consensus 791 l~~~~-~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~ 869 (1175)
++++. ...+|. ..++|+.|++++|.+ ..+|..+.. ++|+.|.+.++....... . ...+.
T Consensus 711 Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i-~~lP~~~~l-~~L~~L~l~~~~~~~l~~-~------------~~~l~ 770 (1153)
T PLN03210 711 LSGCSRLKSFPD-----ISTNISWLDLDETAI-EEFPSNLRL-ENLDELILCEMKSEKLWE-R------------VQPLT 770 (1153)
T ss_pred CCCCCCcccccc-----ccCCcCeeecCCCcc-ccccccccc-cccccccccccchhhccc-c------------ccccc
Confidence 33321 111221 123444445544443 233333322 444444444432111000 0 00000
Q ss_pred cccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCC
Q 047556 870 FIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDG 949 (1175)
Q Consensus 870 ~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~ 949 (1175)
.. ....+++|+.|.+++|+.+..++.. .+.+++|+.|++++|..++.+|... .+++|+.|++++|..+..+|..
T Consensus 771 ~~-~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 771 PL-MTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred hh-hhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 00 0123456677777776666655432 2236778888888887777777765 5677888888888777777777
Q ss_pred CCCCCEEeeCCCCCccccccC-CCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCC
Q 047556 950 LHNVQRIDIQRCPSLVSLAER-GLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPE 1016 (1175)
Q Consensus 950 ~~~L~~L~l~~~~~L~~l~~~-~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 1016 (1175)
.++|+.|+++++ .++.+|.. ...++|+.|++.+|++++.+|..+..+++|+.|++++|+.+..++-
T Consensus 845 ~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 845 STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 777888887764 55555532 1235788888888888888888788888888888888877776543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-41 Score=374.02 Aligned_cols=276 Identities=37% Similarity=0.601 Sum_probs=221.7
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhc
Q 047556 187 RHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESIT 266 (1175)
Q Consensus 187 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 266 (1175)
||.++++|.+.|.... .+.++|+|+||||+||||||++++++...+. +|+.++||.++...+...++..|+.+++
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccc-cccccccccccccccccccccccccccc
Confidence 7899999999998754 4679999999999999999999999866666 8999999999999999999999999998
Q ss_pred CCCC---CccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhhhhcCC-CCeee
Q 047556 267 YSSC---DLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTMEP-IQQYN 342 (1175)
Q Consensus 267 ~~~~---~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~ 342 (1175)
.... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 8743 3456777889999999999999999999864 5888888888777789999999999999876654 67899
Q ss_pred CCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCC-CHHHHHHHHhhcccCCC----C
Q 047556 343 LRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSK-RHDAWDEILNSKILDLP----Q 417 (1175)
Q Consensus 343 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~~~~~~~~~~----~ 417 (1175)
+++|+.+||++||.+.++... ...++...+.+++|+++|+|+||||+++|++|+.+ +..+|+.++++...... .
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999987655 12334445678999999999999999999999766 78889998875443332 1
Q ss_pred CCCchHHHHHhhhcCChhhhhhhhhhccCCCCcccChhHHHHHHHHccCcccc
Q 047556 418 RNGILPALSLSYHYLPSHLKRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQES 470 (1175)
Q Consensus 418 ~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~ 470 (1175)
...+..++.+||+.||+++|.||+|||+||+++.|+++.++++|+|+|||...
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 26689999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-33 Score=363.65 Aligned_cols=526 Identities=17% Similarity=0.141 Sum_probs=304.6
Q ss_pred ceeEEEeeccCCCcchhhHhhhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccC
Q 047556 537 KSRHFSYDCSVNDGNSMLEVMHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITEL 616 (1175)
Q Consensus 537 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l 616 (1175)
.++.+.+....... .....+..+++|+.|.+.++.. ....+...+..+++|++|+|++|.+++.
T Consensus 70 ~v~~L~L~~~~i~~-~~~~~~~~l~~L~~L~Ls~n~~---------------~~~ip~~~~~~l~~L~~L~Ls~n~l~~~ 133 (968)
T PLN00113 70 RVVSIDLSGKNISG-KISSAIFRLPYIQTINLSNNQL---------------SGPIPDDIFTTSSSLRYLNLSNNNFTGS 133 (968)
T ss_pred cEEEEEecCCCccc-cCChHHhCCCCCCEEECCCCcc---------------CCcCChHHhccCCCCCEEECcCCccccc
Confidence 46666665432221 1234567788888888766532 1223445566889999999999988754
Q ss_pred CCCccCCcccccEEEecccccc-cccccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCccCCCC
Q 047556 617 PKGSMSGWKHLRYLNLSHTWIR-NLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFGMKEL 695 (1175)
Q Consensus 617 ~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L 695 (1175)
.+ .+.+++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++++++|++|++++|.+.+.+|..++++
T Consensus 134 ~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 134 IP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred cC--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 42 356889999999999887 678889999999999999996667889999999999999999998777889889999
Q ss_pred CCccccCceeeccC-CCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHH
Q 047556 696 KNLQALSNFIVGTG-TRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEE 774 (1175)
Q Consensus 696 ~~L~~L~~~~~~~~-~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 774 (1175)
++|+.|++..+... ..+..+..+++|+.|+. ......+. ....+..+++|+.|.+..+....
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-------~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~--------- 274 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL-------VYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSG--------- 274 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEEC-------cCceeccc-cChhHhCCCCCCEEECcCCeeec---------
Confidence 99999988777654 34555677777776652 22211111 12235566777777776543210
Q ss_pred HHHhcCCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccc-
Q 047556 775 LVLGMLKPCTNIKKLTINGYGGK-RFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDE- 852 (1175)
Q Consensus 775 ~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~- 852 (1175)
..+..+..+++|+.|++++|... .+|.++.. +++|+.|++++|.+.+.+|..+..+++|+.|+++++.....++..
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ--LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcC--CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 12233445677777777776543 45666654 777888888877777777776666677777777775433222211
Q ss_pred -cccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCc
Q 047556 853 -NNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEA 931 (1175)
Q Consensus 853 -~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 931 (1175)
....|+.|+++++.-...++. ....+++|+.|++.+|.....+|..+..+++
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~---------------------------~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPE---------------------------GLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCCh---------------------------hHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 122344444444322211110 0011334555555555444444444444455
Q ss_pred cceEEeecCCCCCccCCC---CCCCCEEeeCCCCCccccccC-CCCCCccEEEEccCcccccCccccCCCCcccEEEeeC
Q 047556 932 LEQLYIWDCQKLESIPDG---LHNVQRIDIQRCPSLVSLAER-GLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQR 1007 (1175)
Q Consensus 932 L~~L~l~~~~~l~~~p~~---~~~L~~L~l~~~~~L~~l~~~-~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 1007 (1175)
|+.|++++|...+.+|.. +++|+.|++++|.-...++.. ...++|+.|++++|.....+|..+ ..++|+.|++++
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~ 484 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSR 484 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcC
Confidence 555555555444444432 244445555444221111110 112345555555555544555433 335566666666
Q ss_pred CCCCCCCCCC-CCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecC
Q 047556 1008 CPSIVRFPEE-GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIG 1086 (1175)
Q Consensus 1008 c~~l~~lp~~-~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~ 1086 (1175)
|...+.+|.. ..+++|+.|++++|. +.+.+|..+.++++|+.|+|++|... ..+|... ..+++|+.|+|++
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~---~~l~~L~~L~Ls~ 556 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENK---LSGEIPDELSSCKKLVSLDLSHNQLS--GQIPASF---SEMPVLSQLDLSQ 556 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCc---ceeeCChHHcCccCCCEEECCCCccc--ccCChhH---hCcccCCEEECCC
Confidence 6333333322 123455555554332 23333445566666666766665421 2233222 2345666677766
Q ss_pred CcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCCCCCCCcceeeeccCc
Q 047556 1087 FRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEVGLPSSILWLNIWSCP 1136 (1175)
Q Consensus 1087 c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~cp 1136 (1175)
|+-...+| ..+.++++|+.|++++|+....+|..+.+.++....+.++|
T Consensus 557 N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 557 NQLSGEIP-KNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred CcccccCC-hhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 43333444 55666777777777776655566655444444444444444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-33 Score=361.69 Aligned_cols=490 Identities=18% Similarity=0.184 Sum_probs=352.9
Q ss_pred HHhhhcCCCccEEEecccccc-cCCCCccCCcccccEEEecccccc-cccccccCcccccEEeccCccccccCchhhhcc
Q 047556 594 SNLLSKCRKLRVLSLSRSYIT-ELPKGSMSGWKHLRYLNLSHTWIR-NLPKSTCSLINLQILLLRGCYYLLKLPSKMRKL 671 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~-~l~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 671 (1175)
+..|..+++|++|+|++|.+. .+|...+..+.+|++|+|++|.+. .+|. +.+++|++|+|++|.....+|..++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 456889999999999999987 577555669999999999999987 4554 568999999999997667899999999
Q ss_pred CCCceeeecCccccccCCccCCCCCCccccCceeeccC-CCccCccccccccccccccccCCccCCCChhhcchhhhccc
Q 047556 672 INLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTG-TRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYEN 750 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~-~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 750 (1175)
++|++|++++|.+.+.+|..++++++|++|++..+... ..+..+..+++|+.|. +.+....+.. ...+..+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~-------L~~n~l~~~~-p~~l~~l 235 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY-------LGYNNLSGEI-PYEIGGL 235 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE-------CcCCccCCcC-ChhHhcC
Confidence 99999999999988889999999999999998877644 3455566667776664 2222221111 1224556
Q ss_pred ccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEeCCCCCCCCCCCc
Q 047556 751 QNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGK-RFPSWIGDPSYSKMEVLILENCENCTYLPSTV 829 (1175)
Q Consensus 751 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 829 (1175)
.+|+.|++..+... ...+..+..+++|+.|++++|... .+|.++.. +++|+.|++++|.+.+.+|..+
T Consensus 236 ~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 236 TSLNHLDLVYNNLT---------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS--LQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCCCEEECcCceec---------cccChhHhCCCCCCEEECcCCeeeccCchhHhh--ccCcCEEECcCCeeccCCChhH
Confidence 66666666544321 112233455666667766666543 34555543 6667777777666666666655
Q ss_pred CCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcC
Q 047556 830 LWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLK 909 (1175)
Q Consensus 830 ~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~ 909 (1175)
..+++|+.|+++++.....++.. ..-.++|+.|.++++.-...++. ..+.+++|+
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~---------------------~~~l~~L~~L~L~~n~l~~~~p~----~l~~~~~L~ 359 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVA---------------------LTSLPRLQVLQLWSNKFSGEIPK----NLGKHNNLT 359 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChh---------------------HhcCCCCCEEECcCCCCcCcCCh----HHhCCCCCc
Confidence 55566666666654322111100 01125677777776653222221 123467899
Q ss_pred eEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCC---CCCCCEEeeCCCCCccccccC-CCCCCccEEEEccCc
Q 047556 910 RLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDG---LHNVQRIDIQRCPSLVSLAER-GLPITISSVRIWSCE 985 (1175)
Q Consensus 910 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~---~~~L~~L~l~~~~~L~~l~~~-~~~~~L~~L~l~~~~ 985 (1175)
.|++++|.....+|..+..+++|+.|++++|.....+|.. +++|+.|++++|.--..+|.. ...++|+.|++++|.
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 9999999877778887777889999999999887777764 578999999988543333321 223689999999998
Q ss_pred ccccCccccCCCCcccEEEeeCCCCCCCCCCCCCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccc
Q 047556 986 KLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAEC 1065 (1175)
Q Consensus 986 ~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~ 1065 (1175)
....+|..+..+++|+.|++++|...+.+|.....++|+.|++++|.. .+..|..|.++++|+.|++++|.. ...
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l--~~~ 514 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF---SGAVPRKLGSLSELMQLKLSENKL--SGE 514 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc---CCccChhhhhhhccCEEECcCCcc--eee
Confidence 877888888899999999999997777777765567899999986654 445566788999999999999762 234
Q ss_pred cchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCC-CCCCCCcceeeeccCchh
Q 047556 1066 FPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPE-VGLPSSILWLNIWSCPML 1138 (1175)
Q Consensus 1066 ~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~~sL~~L~i~~cp~L 1138 (1175)
+|... ..+++|+.|+|++ |.++...+..+.++++|+.|++++|+....+|. ...+++|++|++++|+..
T Consensus 515 ~p~~~---~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 515 IPDEL---SSCKKLVSLDLSH-NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CChHH---cCccCCCEEECCC-CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 55543 4568999999999 466655447899999999999999877667886 233678999999999754
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=3e-28 Score=250.16 Aligned_cols=446 Identities=20% Similarity=0.227 Sum_probs=276.1
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeec
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDIT 680 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 680 (1175)
..|..|++++|.+..+. ..+.++..|.+|++.+|.+.++|.+|+.+..++.|+.++| .+..+|+.++.+.+|++|+.+
T Consensus 45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCchhhcc-HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcc
Confidence 45666777777777766 5677777777888888877778888888888888888777 677777777777788888777
Q ss_pred CccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccccc
Q 047556 681 GAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQW 760 (1175)
Q Consensus 681 ~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 760 (1175)
.|. ...+|++++.+-.|..|+...+...+.|.++..+.++..+.. ... +++.+
T Consensus 123 ~n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~-------~~n---------------~l~~l---- 175 (565)
T KOG0472|consen 123 SNE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDL-------EGN---------------KLKAL---- 175 (565)
T ss_pred ccc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhc-------ccc---------------chhhC----
Confidence 777 667777777777777777777766666666666665555431 000 11111
Q ss_pred ccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEee
Q 047556 761 GSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEI 840 (1175)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L 840 (1175)
++..-.+..|++|+...|....+|..++. +.+|..|++..|++ ..+| .|..+..|+.|.+
T Consensus 176 ----------------~~~~i~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 176 ----------------PENHIAMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNKI-RFLP-EFPGCSLLKELHV 235 (565)
T ss_pred ----------------CHHHHHHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhccc-ccCC-CCCccHHHHHHHh
Confidence 00011145566667767777777777764 77777777777776 3445 3444466666666
Q ss_pred ccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCC
Q 047556 841 HNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELT 920 (1175)
Q Consensus 841 ~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~ 920 (1175)
+. +.++.++.+.... .++|..|++++ .++++++.+..- +.+|++|++++| .+.
T Consensus 236 g~-N~i~~lpae~~~~--------------------L~~l~vLDLRd-Nklke~Pde~cl----LrsL~rLDlSNN-~is 288 (565)
T KOG0472|consen 236 GE-NQIEMLPAEHLKH--------------------LNSLLVLDLRD-NKLKEVPDEICL----LRSLERLDLSNN-DIS 288 (565)
T ss_pred cc-cHHHhhHHHHhcc--------------------cccceeeeccc-cccccCchHHHH----hhhhhhhcccCC-ccc
Confidence 44 3333333322211 13444445544 334444332221 445777777776 456
Q ss_pred cCCCCCCCcCccceEEeecCCCCCc----c----------------------------------CCCC------CCCCEE
Q 047556 921 SLSPGIRLPEALEQLYIWDCQKLES----I----------------------------------PDGL------HNVQRI 956 (1175)
Q Consensus 921 ~~~~~~~~~~~L~~L~l~~~~~l~~----~----------------------------------p~~~------~~L~~L 956 (1175)
.+|...+++ +|+.|.+.+|+.-+. + +..+ -+.+.|
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 677777777 677777777763210 0 0001 122233
Q ss_pred eeCCCCCccccccCCCC----CCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCC-CCCCCcceEEEecc
Q 047556 957 DIQRCPSLVSLAERGLP----ITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEE-GFPNNLVELKIRGV 1031 (1175)
Q Consensus 957 ~l~~~~~L~~l~~~~~~----~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~ 1031 (1175)
++++ .+++.+|..-+- .-+...+++.+ .+..+|..+..+..+.+.-+..+..+..+|.. ..+++|..|++++|
T Consensus 368 ~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 368 DVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred cccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence 3322 123333322111 12334444444 45566666666665554433333355554432 23578888888877
Q ss_pred CccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccC
Q 047556 1032 DVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDD 1111 (1175)
Q Consensus 1032 ~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 1111 (1175)
-.+.++ ..++.+..|+.|+++.|. ...+|.-. ..+..++.+-.++ +.+..++++++.++.+|.+|++.+
T Consensus 446 ~Ln~LP----~e~~~lv~Lq~LnlS~Nr---Fr~lP~~~---y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 446 LLNDLP----EEMGSLVRLQTLNLSFNR---FRMLPECL---YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred hhhhcc----hhhhhhhhhheecccccc---cccchHHH---hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC
Confidence 766654 456778889999999864 66677644 2334455554555 899999988899999999999998
Q ss_pred CCCCCcCCC-CCCCCCcceeeeccCch
Q 047556 1112 CPNLKSFPE-VGLPSSILWLNIWSCPM 1137 (1175)
Q Consensus 1112 c~~l~~lp~-~~~~~sL~~L~i~~cp~ 1137 (1175)
+.++.+|. .|.+++|++|++.|+|-
T Consensus 515 -Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 515 -NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred -CchhhCChhhccccceeEEEecCCcc
Confidence 77888886 67889999999999984
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.8e-24 Score=231.09 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=79.3
Q ss_pred cccCCCCcccEEEeeCCCCCCCCCCCCC--CCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchh
Q 047556 992 NDLHKLNSLEHLYLQRCPSIVRFPEEGF--PNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDE 1069 (1175)
Q Consensus 992 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~ 1069 (1175)
+++..+++|++|+|++| .++.+++..+ +..|++|.++.|++..+.. ..|..+.+|+.|+|.+|.. ...+.+.
T Consensus 311 d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e---~af~~lssL~~LdLr~N~l--s~~IEDa 384 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAE---GAFVGLSSLHKLDLRSNEL--SWCIEDA 384 (873)
T ss_pred chhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHh---hHHHHhhhhhhhcCcCCeE--EEEEecc
Confidence 34455667777777776 6666666543 3567777776666655543 2455667777777776432 1223333
Q ss_pred hhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCCCC-CCCcceee
Q 047556 1070 EMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEVGL-PSSILWLN 1131 (1175)
Q Consensus 1070 ~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~-~~sL~~L~ 1131 (1175)
...+..+++|+.|.+.+ |++++++..+|.+|++|+.|++.+++ +.++-...+ +..|+.|.
T Consensus 385 a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv 445 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELV 445 (873)
T ss_pred hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhh
Confidence 22234467777777777 67777777777777777777777743 444433222 33555554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-24 Score=232.36 Aligned_cols=359 Identities=18% Similarity=0.203 Sum_probs=196.6
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccC-chhhhccCCCceeeec
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKL-PSKMRKLINLRHLDIT 680 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 680 (1175)
.-+.||+++|.+..+....|.++++|+.+++.+|.++.+|.......+|+.|+|.+| .+..+ .+.+.-++.||.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 456799999998888878888999999999999999999988888888999999998 45444 4567888889999998
Q ss_pred CccccccCCcc-CCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccc
Q 047556 681 GAYLIKEMPFG-MKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQ 759 (1175)
Q Consensus 681 ~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 759 (1175)
.|. +..+|.. +..-.++++|++..+.+...
T Consensus 158 rN~-is~i~~~sfp~~~ni~~L~La~N~It~l------------------------------------------------ 188 (873)
T KOG4194|consen 158 RNL-ISEIPKPSFPAKVNIKKLNLASNRITTL------------------------------------------------ 188 (873)
T ss_pred hch-hhcccCCCCCCCCCceEEeecccccccc------------------------------------------------
Confidence 887 5555532 44334444444433322111
Q ss_pred cccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEe
Q 047556 760 WGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLE 839 (1175)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~ 839 (1175)
..+.+..+.+|..|.++.|.++.+|...+. .+++|+.|+|..|.+...--..|+.+++|+.|.
T Consensus 189 ----------------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 189 ----------------ETGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred ----------------ccccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 112233344566666777777777765553 467777777776665322222344445555555
Q ss_pred eccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccC-------CCCCCcCeEE
Q 047556 840 IHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDAT-------SSSVTLKRLG 912 (1175)
Q Consensus 840 L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~-------~~~~~L~~L~ 912 (1175)
+... .+. .|+.=.+..|.+++.+.+..|... .++.+|+.|+
T Consensus 252 lqrN-~I~-------------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 252 LQRN-DIS-------------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred hhhc-Ccc-------------------------------cccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 5431 111 111112223333222222222111 1233344444
Q ss_pred eecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCcc
Q 047556 913 IRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPN 992 (1175)
Q Consensus 913 l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~ 992 (1175)
++.|..-..-+.++.+.++|+.|+|++|... .++ ++
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~----------------------~l~----------------------~~ 335 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRIT----------------------RLD----------------------EG 335 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccc----------------------cCC----------------------hh
Confidence 4444322222333333344444444444321 111 23
Q ss_pred ccCCCCcccEEEeeCCCCCCCCCCCC--CCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhh
Q 047556 993 DLHKLNSLEHLYLQRCPSIVRFPEEG--FPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEE 1070 (1175)
Q Consensus 993 ~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~ 1070 (1175)
+|..+..|++|.|++| .+..+.+.. ..++|+.|+++.|...-........|..+++|+.|.+.+|. ++++|.-.
T Consensus 336 sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq---lk~I~krA 411 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ---LKSIPKRA 411 (873)
T ss_pred HHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce---eeecchhh
Confidence 3444555555555555 444444332 23455555554444332221222345666777777776654 55666555
Q ss_pred hhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccC
Q 047556 1071 MRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDD 1111 (1175)
Q Consensus 1071 ~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 1111 (1175)
| .-+.+|++|+|.+ |.+.++-+++|..+ .|++|.+..
T Consensus 412 f--sgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 412 F--SGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred h--ccCcccceecCCC-Ccceeecccccccc-hhhhhhhcc
Confidence 4 3456677777766 56666666666666 666666543
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=7.3e-22 Score=255.01 Aligned_cols=105 Identities=28% Similarity=0.370 Sum_probs=75.0
Q ss_pred HHHhhhcCCCccEEEecccccc-------cCCCCccCCc-ccccEEEecccccccccccccCcccccEEeccCccccccC
Q 047556 593 FSNLLSKCRKLRVLSLSRSYIT-------ELPKGSMSGW-KHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKL 664 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~~i~-------~l~~~~~~~l-~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 664 (1175)
....|.+|++|+.|.+..+... .+| ..|..+ .+||+|.+.++.++.+|..+ .+.+|+.|+|.+| .+..+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-ccccc
Confidence 4566888999999988665321 234 445554 45888888888888888877 4688888888887 67788
Q ss_pred chhhhccCCCceeeecCccccccCCccCCCCCCcccc
Q 047556 665 PSKMRKLINLRHLDITGAYLIKEMPFGMKELKNLQAL 701 (1175)
Q Consensus 665 p~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 701 (1175)
|.++..+++|+.|+++++..+..+| .++.+++|+.|
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L 662 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETL 662 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEE
Confidence 8888888888888888776555555 34444555544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=2e-25 Score=229.49 Aligned_cols=440 Identities=23% Similarity=0.241 Sum_probs=226.5
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCce
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRH 676 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 676 (1175)
++.+..+..|+.++|.+..+| ..++.+..|+.|+.++|.+.++|++|+.+..|..|+..+| .+..+|..+..+.+|..
T Consensus 87 ig~l~~l~~l~vs~n~ls~lp-~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~ 164 (565)
T KOG0472|consen 87 IGELEALKSLNVSHNKLSELP-EQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSK 164 (565)
T ss_pred HHHHHHHHHhhcccchHhhcc-HHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHH
Confidence 334444444444444444444 3344444444444444444444444444444444444443 34444444444444444
Q ss_pred eeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccc
Q 047556 677 LDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEAL 756 (1175)
Q Consensus 677 L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 756 (1175)
|++.+|. +..+|+..-+++.|++|+...+-....|..++.+.+|.-|. ++...... ...+.++..|++|
T Consensus 165 l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly-------L~~Nki~~---lPef~gcs~L~El 233 (565)
T KOG0472|consen 165 LDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY-------LRRNKIRF---LPEFPGCSLLKEL 233 (565)
T ss_pred hhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH-------hhhccccc---CCCCCccHHHHHH
Confidence 4444444 33333333334444444444443333443333333333222 11111000 0013334444444
Q ss_pred ccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCcc
Q 047556 757 SLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLK 836 (1175)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 836 (1175)
++.. +..+....+.++.+++|..|++..|..+++|..+.- +.+|++|++++|.+. .+|...+.+ .|+
T Consensus 234 h~g~---------N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is-~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 234 HVGE---------NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDIS-SLPYSLGNL-HLK 300 (565)
T ss_pred Hhcc---------cHHHhhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccc-cCCcccccc-eee
Confidence 4321 222444556667788999999999999999998875 888999999999884 456666665 888
Q ss_pred EEeeccCcCcceeccc---cc--cccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeE
Q 047556 837 MLEIHNCKNLQHLVDE---NN--LQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRL 911 (1175)
Q Consensus 837 ~L~L~~~~~l~~l~~~---~~--~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L 911 (1175)
.|.+.|.+ ++++..+ .+ .-|+.|.- . ..|..+..- .+........+
T Consensus 301 ~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs----------------~------~~~dglS~s-e~~~e~~~t~~----- 351 (565)
T KOG0472|consen 301 FLALEGNP-LRTIRREIISKGTQEVLKYLRS----------------K------IKDDGLSQS-EGGTETAMTLP----- 351 (565)
T ss_pred ehhhcCCc-hHHHHHHHHcccHHHHHHHHHH----------------h------hccCCCCCC-cccccccCCCC-----
Confidence 88888744 3333211 00 00111100 0 000000000 00000000000
Q ss_pred EeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCC------CCCCEEeeCCCCCccccccCCC-CCCccEEEEccC
Q 047556 912 GIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGL------HNVQRIDIQRCPSLVSLAERGL-PITISSVRIWSC 984 (1175)
Q Consensus 912 ~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~------~~L~~L~l~~~~~L~~l~~~~~-~~~L~~L~l~~~ 984 (1175)
....+..-...+.+.|++++-+ ++.+|... .-....+++.+ ++.++|..-- ...+.+.-+.++
T Consensus 352 --------~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 352 --------SESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred --------CCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhc
Confidence 0000001122334444444432 22333211 01223333332 2222221100 011122223345
Q ss_pred cccccCccccCCCCcccEEEeeCCCCCCCCCCCC-CCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccc
Q 047556 985 EKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEG-FPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEA 1063 (1175)
Q Consensus 985 ~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~ 1063 (1175)
+++..+|..+..+++|..|++++| .+.++|.+. ....|+.|+++.|+...++. .+..+..|+.+-.+++. +
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~----~~y~lq~lEtllas~nq---i 493 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPE----CLYELQTLETLLASNNQ---I 493 (565)
T ss_pred CccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchH----HHhhHHHHHHHHhcccc---c
Confidence 567777888899999999999998 788888774 34679999998887666653 34445566666666654 7
Q ss_pred cccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCC
Q 047556 1064 ECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCP 1113 (1175)
Q Consensus 1064 ~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1113 (1175)
..++..+. ....+|..|++.+ |.+..+| ..++++++|++|+|+++|
T Consensus 494 ~~vd~~~l--~nm~nL~tLDL~n-Ndlq~IP-p~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 494 GSVDPSGL--KNMRNLTTLDLQN-NDLQQIP-PILGNMTNLRHLELDGNP 539 (565)
T ss_pred cccChHHh--hhhhhcceeccCC-CchhhCC-hhhccccceeEEEecCCc
Confidence 78887753 4668899999998 8999999 589999999999999965
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-24 Score=246.04 Aligned_cols=459 Identities=23% Similarity=0.280 Sum_probs=246.2
Q ss_pred hhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCc
Q 047556 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLR 675 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 675 (1175)
+..+.-.|+.||+++|.+...| ..+..+.+|+.|+++.|.|.+.|.++.++.+|++|+|.+| .+..+|.++..+++|+
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQ 117 (1081)
T ss_pred HhhheeeeEEeeccccccccCC-chhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccc
Confidence 3444455888888888888888 6788888888888888888888888888888888888887 7888888888888888
Q ss_pred eeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccc
Q 047556 676 HLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEA 755 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 755 (1175)
.|++++|. ...+|..+..++.+..+...++..... ++... .+.+. +....+.. .......+++.
T Consensus 118 ~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~---lg~~~-ik~~~--l~~n~l~~---------~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 118 YLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQR---LGQTS-IKKLD--LRLNVLGG---------SFLIDIYNLTH 181 (1081)
T ss_pred ccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhh---hcccc-chhhh--hhhhhccc---------chhcchhhhhe
Confidence 88888888 567777777777777665544411000 11100 11111 00000000 00011111111
Q ss_pred -cccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCC
Q 047556 756 -LSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSS 834 (1175)
Q Consensus 756 -L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~ 834 (1175)
|++.++.. . ...+..+.+|+.|....+....+.. .-++|+.|+..+|.+....+.. ...+
T Consensus 182 ~ldLr~N~~-----------~-~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~l~~~~~~p--~p~n 242 (1081)
T KOG0618|consen 182 QLDLRYNEM-----------E-VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNPLTTLDVHP--VPLN 242 (1081)
T ss_pred eeecccchh-----------h-hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCcceeecccc--cccc
Confidence 22221111 0 1112223333333333222211110 1233333333333332111110 0022
Q ss_pred ccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCC------CCCCc
Q 047556 835 LKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATS------SSVTL 908 (1175)
Q Consensus 835 L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~------~~~~L 908 (1175)
|++++++.. .+..++ =.+..|.+++.+....+.... ...+|
T Consensus 243 l~~~dis~n-----------------------~l~~lp----------~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 243 LQYLDISHN-----------------------NLSNLP----------EWIGACANLEALNANHNRLVALPLRISRITSL 289 (1081)
T ss_pred ceeeecchh-----------------------hhhcch----------HHHHhcccceEecccchhHHhhHHHHhhhhhH
Confidence 333333220 000000 011122222222221111110 12344
Q ss_pred CeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccc
Q 047556 909 KRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLE 988 (1175)
Q Consensus 909 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~ 988 (1175)
+.|.+..| .+..+|+......+|++|+|..|. +..+|..+ +..+ ..++..|..+ +..+.
T Consensus 290 ~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~-L~~lp~~~--l~v~----------------~~~l~~ln~s-~n~l~ 348 (1081)
T KOG0618|consen 290 VSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNF--LAVL----------------NASLNTLNVS-SNKLS 348 (1081)
T ss_pred HHHHhhhh-hhhhCCCcccccceeeeeeehhcc-ccccchHH--Hhhh----------------hHHHHHHhhh-hcccc
Confidence 45554444 234444444444555555555543 23333311 0000 0112222222 22333
Q ss_pred cCccc-cCCCCcccEEEeeCCCCCCC--CCCCCCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccc
Q 047556 989 ALPND-LHKLNSLEHLYLQRCPSIVR--FPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAEC 1065 (1175)
Q Consensus 989 ~lp~~-~~~l~~L~~L~l~~c~~l~~--lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~ 1065 (1175)
.+|.. =..++.|+.|++.+| .+++ +|....+..|+.|++++|..+.+++. .+.++..|++|+++||. ++.
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas---~~~kle~LeeL~LSGNk---L~~ 421 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS---KLRKLEELEELNLSGNK---LTT 421 (1081)
T ss_pred ccccccchhhHHHHHHHHhcC-cccccchhhhccccceeeeeecccccccCCHH---HHhchHHhHHHhcccch---hhh
Confidence 44421 235678899999988 4443 44444567899999998888888765 47788999999999976 778
Q ss_pred cchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCC-CCCC-CCcceeeeccCchhHHhhc
Q 047556 1066 FPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPE-VGLP-SSILWLNIWSCPMLEKEYK 1143 (1175)
Q Consensus 1066 ~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~-~sL~~L~i~~cp~L~~~~~ 1143 (1175)
+|+.. .....|+.|...+ |++..+| .+..++.|+.++++. ++|+.+.- ...| +.|++||++|++.+..
T Consensus 422 Lp~tv---a~~~~L~tL~ahs-N~l~~fP--e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~--- 491 (1081)
T KOG0618|consen 422 LPDTV---ANLGRLHTLRAHS-NQLLSFP--ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLVF--- 491 (1081)
T ss_pred hhHHH---HhhhhhHHHhhcC-Cceeech--hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccccc---
Confidence 88665 3456788887777 7899998 578999999999996 77776432 3467 8999999999986431
Q ss_pred cCCCCCCccccCcceEEECCe
Q 047556 1144 RDTGKEWSKIATIPRVCIDGK 1164 (1175)
Q Consensus 1144 ~~~g~~~~~i~~i~~~~i~~~ 1164 (1175)
..+..+..+++....|+-+
T Consensus 492 --d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 492 --DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred --chhhhHHhhhhhheecccC
Confidence 1233444455555444433
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=3.3e-24 Score=231.44 Aligned_cols=364 Identities=18% Similarity=0.228 Sum_probs=210.9
Q ss_pred CCCccEEEecccccc--cCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCcee
Q 047556 600 CRKLRVLSLSRSYIT--ELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHL 677 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~--~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 677 (1175)
++-.|-.|+++|.++ .+| .....+..++.|.|..+.+..+|+.++.|.+|++|.+++| .+..+...++.|+.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 455677788888876 344 6777888888888888888888888888888888888888 566666667788888888
Q ss_pred eecCccc-cccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccc
Q 047556 678 DITGAYL-IKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEAL 756 (1175)
Q Consensus 678 ~l~~~~~-~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 756 (1175)
++..|++ ...+|..+-+|..|..|+++.+.....|
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP-------------------------------------------- 119 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP-------------------------------------------- 119 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcc--------------------------------------------
Confidence 8887764 2356777777777777766555333322
Q ss_pred ccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCcc
Q 047556 757 SLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLK 836 (1175)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 836 (1175)
..+..-.++-.|++++|.+.++|..++- ++..|-.|+|++|.+ +.+|+-+..+.+|+
T Consensus 120 ---------------------~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrL-e~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 120 ---------------------TNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRL-EMLPPQIRRLSMLQ 176 (1255)
T ss_pred ---------------------hhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchh-hhcCHHHHHHhhhh
Confidence 1122234566777888888888876653 577788888888876 45666666667888
Q ss_pred EEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecC
Q 047556 837 MLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRC 916 (1175)
Q Consensus 837 ~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~ 916 (1175)
+|.|++.+- ... .+..+|. +.+|+.|.+++.
T Consensus 177 tL~Ls~NPL------------~hf-----------------------QLrQLPs--------------mtsL~vLhms~T 207 (1255)
T KOG0444|consen 177 TLKLSNNPL------------NHF-----------------------QLRQLPS--------------MTSLSVLHMSNT 207 (1255)
T ss_pred hhhcCCChh------------hHH-----------------------HHhcCcc--------------chhhhhhhcccc
Confidence 888877431 000 0001111 122333333332
Q ss_pred C-CCCcCCCCCCCcCccceEEeecCCCCCccCCC---CCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCcc
Q 047556 917 P-ELTSLSPGIRLPEALEQLYIWDCQKLESIPDG---LHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPN 992 (1175)
Q Consensus 917 ~-~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~---~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~ 992 (1175)
+ .+..+|..+..+.+|..++++.|. +..+|+. +++|..|+++++ .+ +.+.-
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N-~i-----------------------teL~~ 262 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN-KI-----------------------TELNM 262 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC-ce-----------------------eeeec
Confidence 1 223344444444555555554442 2333332 133333333321 11 11111
Q ss_pred ccCCCCcccEEEeeCCCCCCCCCCC-CCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhh
Q 047556 993 DLHKLNSLEHLYLQRCPSIVRFPEE-GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEM 1071 (1175)
Q Consensus 993 ~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~ 1071 (1175)
......+|++|++|+| .++.+|.. ..++.|+.|.+.+|..+ ...+|.+++.|.+|+.+..++|. ++-+|++.
T Consensus 263 ~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~--FeGiPSGIGKL~~Levf~aanN~---LElVPEgl- 335 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLT--FEGIPSGIGKLIQLEVFHAANNK---LELVPEGL- 335 (1255)
T ss_pred cHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCccc--ccCCccchhhhhhhHHHHhhccc---cccCchhh-
Confidence 2344556677777776 66666654 12355555555443322 12345566666666666666644 44555543
Q ss_pred hccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCc
Q 047556 1072 RMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKS 1117 (1175)
Q Consensus 1072 ~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1117 (1175)
.-...|+.|.|+. |.+-.+| +++.-|+.|+.|++..+|++--
T Consensus 336 --cRC~kL~kL~L~~-NrLiTLP-eaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 336 --CRCVKLQKLKLDH-NRLITLP-EAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred --hhhHHHHHhcccc-cceeech-hhhhhcCCcceeeccCCcCccC
Confidence 2335566666654 5666666 5566666666666666666543
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.2e-23 Score=227.12 Aligned_cols=371 Identities=19% Similarity=0.235 Sum_probs=219.7
Q ss_pred ccceeEEEeeccCCCcchhhHhhhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccc
Q 047556 535 VQKSRHFSYDCSVNDGNSMLEVMHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYIT 614 (1175)
Q Consensus 535 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~ 614 (1175)
.+-+|.+.+..+++.+......+..|++++-|.+.... ....|.-++.+.+|.+|.+++|++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-----------------L~~vPeEL~~lqkLEHLs~~HN~L~ 68 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-----------------LEQVPEELSRLQKLEHLSMAHNQLI 68 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-----------------hhhChHHHHHHhhhhhhhhhhhhhH
Confidence 34566666666666655555666777777777664432 2334666778888888888888887
Q ss_pred cCCCCccCCcccccEEEecccccc--cccccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCcc-
Q 047556 615 ELPKGSMSGWKHLRYLNLSHTWIR--NLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFG- 691 (1175)
Q Consensus 615 ~l~~~~~~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~- 691 (1175)
.+. +.++.++.||.+.+++|+++ .+|..|.+|..|.+|||++| .+.+.|..+...+++-.|+|++|+ +..+|..
T Consensus 69 ~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~l 145 (1255)
T KOG0444|consen 69 SVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSL 145 (1255)
T ss_pred hhh-hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchH
Confidence 777 77788888888888888776 56888888888888888887 788888888888888888888887 6777765
Q ss_pred CCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchh
Q 047556 692 MKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNED 771 (1175)
Q Consensus 692 ~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 771 (1175)
+-+|+.|-.|+++.+.....|+.+..|..|+.|. +.+..... .-...+..+..|+.|.++....
T Consensus 146 finLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~-------Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqR-------- 209 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK-------LSNNPLNH-FQLRQLPSMTSLSVLHMSNTQR-------- 209 (1255)
T ss_pred HHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh-------cCCChhhH-HHHhcCccchhhhhhhcccccc--------
Confidence 5677777777777777666665666666555554 11111100 0000112222333333322111
Q ss_pred HHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceecc
Q 047556 772 KEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVD 851 (1175)
Q Consensus 772 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~ 851 (1175)
.-...+..+..+.||..++++.|....+|..+.. +++|+.|+|++|.++..--....+ .+|++|+++.
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~--l~~LrrLNLS~N~iteL~~~~~~W-~~lEtLNlSr--------- 277 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK--LRNLRRLNLSGNKITELNMTEGEW-ENLETLNLSR--------- 277 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCCcchHHHhh--hhhhheeccCcCceeeeeccHHHH-hhhhhhcccc---------
Confidence 0111222233344455555555555555544443 455555555555443221111112 3333333332
Q ss_pred ccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCC-CCcCCCCCCCcC
Q 047556 852 ENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPE-LTSLSPGIRLPE 930 (1175)
Q Consensus 852 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~ 930 (1175)
+.|+.++.... .++.|+.|.+.+|.. ..-+|.+++.+.
T Consensus 278 -------------------------------------NQLt~LP~avc----KL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 278 -------------------------------------NQLTVLPDAVC----KLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred -------------------------------------chhccchHHHh----hhHHHHHHHhccCcccccCCccchhhhh
Confidence 11222211111 144556666655532 346778888888
Q ss_pred ccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCC
Q 047556 931 ALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPS 1010 (1175)
Q Consensus 931 ~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~ 1010 (1175)
+|+.+..++| .++.+|+++ +.|..|+.+. + +|+.+-.+|..+.-++.|+.||+..||+
T Consensus 317 ~Levf~aanN-~LElVPEgl--------cRC~kL~kL~------------L-~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 317 QLEVFHAANN-KLELVPEGL--------CRCVKLQKLK------------L-DHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhHHHHhhcc-ccccCchhh--------hhhHHHHHhc------------c-cccceeechhhhhhcCCcceeeccCCcC
Confidence 8888888766 466677654 2344444332 2 3456677899999999999999999998
Q ss_pred CCCCCC
Q 047556 1011 IVRFPE 1016 (1175)
Q Consensus 1011 l~~lp~ 1016 (1175)
+...|.
T Consensus 375 LVMPPK 380 (1255)
T KOG0444|consen 375 LVMPPK 380 (1255)
T ss_pred ccCCCC
Confidence 877654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-22 Score=230.76 Aligned_cols=415 Identities=23% Similarity=0.230 Sum_probs=257.0
Q ss_pred CCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 600 CRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
...+..|+++.|.+...|.+.+.+..+|+.|++++|.+...|..|+.+.+|+.|+++.| .+...|.+++++.+|++|.|
T Consensus 20 ~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 20 NEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhhee
Confidence 33488899999988887777778888899999999999999999999999999999999 89999999999999999999
Q ss_pred cCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccc
Q 047556 680 TGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQ 759 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 759 (1175)
.+|. +..+|.++..+++|+.|++..+.....|..+..+..+..+.
T Consensus 99 ~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~---------------------------------- 143 (1081)
T KOG0618|consen 99 KNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELA---------------------------------- 143 (1081)
T ss_pred ccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHh----------------------------------
Confidence 9887 88999999999999999998887766664444443333221
Q ss_pred cccccCCCCchhHHHHHHhcCCCCCCccEEEEecc-CCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEE
Q 047556 760 WGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGY-GGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKML 838 (1175)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L 838 (1175)
.++| ....++ -..++.+++..+.+.+.++..+..+.. .|
T Consensus 144 -------------------------------~s~N~~~~~lg-------~~~ik~~~l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 144 -------------------------------ASNNEKIQRLG-------QTSIKKLDLRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred -------------------------------hhcchhhhhhc-------cccchhhhhhhhhcccchhcchhhhhe--ee
Confidence 1111 000011 111556666666666666554433333 36
Q ss_pred eeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCC
Q 047556 839 EIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPE 918 (1175)
Q Consensus 839 ~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~ 918 (1175)
+|..+.-. .+......+|+.|.... . .|..+++. -++|+.|+...|+.
T Consensus 184 dLr~N~~~-~~dls~~~~l~~l~c~r-n------------~ls~l~~~------------------g~~l~~L~a~~n~l 231 (1081)
T KOG0618|consen 184 DLRYNEME-VLDLSNLANLEVLHCER-N------------QLSELEIS------------------GPSLTALYADHNPL 231 (1081)
T ss_pred ecccchhh-hhhhhhccchhhhhhhh-c------------ccceEEec------------------CcchheeeeccCcc
Confidence 66553211 22222222222221110 0 11111111 23344444444443
Q ss_pred CCcCCCCCCCcCccceEEeecCCCCCccCCC---CCCCCEEeeCCCCCccccccCCCC-CCccEEEEccCcccccCcccc
Q 047556 919 LTSLSPGIRLPEALEQLYIWDCQKLESIPDG---LHNVQRIDIQRCPSLVSLAERGLP-ITISSVRIWSCEKLEALPNDL 994 (1175)
Q Consensus 919 l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~---~~~L~~L~l~~~~~L~~l~~~~~~-~~L~~L~l~~~~~l~~lp~~~ 994 (1175)
.+..+. ..+.+|++++++.+. +..+|++ +.+|+.+++..+ .+..++....+ .+|++|.+..| .++.+|...
T Consensus 232 ~~~~~~--p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~l 306 (1081)
T KOG0618|consen 232 TTLDVH--PVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN-ELEYIPPFL 306 (1081)
T ss_pred eeeccc--cccccceeeecchhh-hhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcc
Confidence 321111 133445555555443 2233332 234444443332 33333332222 23444444333 344455555
Q ss_pred CCCCcccEEEeeCCCCCCCCCCCC---------------------------CCCCcceEEEeccCccchhhhhhhccCCC
Q 047556 995 HKLNSLEHLYLQRCPSIVRFPEEG---------------------------FPNNLVELKIRGVDVKMYKAAIQWGLHRL 1047 (1175)
Q Consensus 995 ~~l~~L~~L~l~~c~~l~~lp~~~---------------------------~~~~L~~L~l~~~~~~~l~~~~~~~l~~l 1047 (1175)
..+++|++|+|..| ++..+|+.. ..+.|+.|.+-+|. ++...-..|.+.
T Consensus 307 e~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~---Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH---LTDSCFPVLVNF 382 (1081)
T ss_pred cccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc---ccccchhhhccc
Confidence 55666666666665 555555431 12344455554333 222222357778
Q ss_pred CCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCCCCCCCc
Q 047556 1048 TSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEVGLPSSI 1127 (1175)
Q Consensus 1048 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL 1127 (1175)
.+|+.|++++|. +.+||...+ ..+..|++|++|+ |+|+.+| +.+.++..|++|...+ +.+..+|+....+.|
T Consensus 383 ~hLKVLhLsyNr---L~~fpas~~--~kle~LeeL~LSG-NkL~~Lp-~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL 454 (1081)
T KOG0618|consen 383 KHLKVLHLSYNR---LNSFPASKL--RKLEELEELNLSG-NKLTTLP-DTVANLGRLHTLRAHS-NQLLSFPELAQLPQL 454 (1081)
T ss_pred cceeeeeecccc---cccCCHHHH--hchHHhHHHhccc-chhhhhh-HHHHhhhhhHHHhhcC-CceeechhhhhcCcc
Confidence 899999999976 778888665 5667899999999 8999999 7888999999999988 788899987778899
Q ss_pred ceeeeccCchhHH
Q 047556 1128 LWLNIWSCPMLEK 1140 (1175)
Q Consensus 1128 ~~L~i~~cp~L~~ 1140 (1175)
+.+|++.+ .|+.
T Consensus 455 ~~lDlS~N-~L~~ 466 (1081)
T KOG0618|consen 455 KVLDLSCN-NLSE 466 (1081)
T ss_pred eEEecccc-hhhh
Confidence 99999855 4443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=9.8e-15 Score=173.96 Aligned_cols=255 Identities=25% Similarity=0.358 Sum_probs=156.9
Q ss_pred CccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEcc
Q 047556 785 NIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITS 864 (1175)
Q Consensus 785 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~ 864 (1175)
.-..|+++++..+.+|..+. ++|+.|.+.+|.+.. +|.. +++|++|+++++ .++.++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N-~LtsLP-------------- 258 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGN-QLTSLP-------------- 258 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh----cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCC-ccCccc--------------
Confidence 45567777777777777653 467888888877643 5542 367777777663 333332
Q ss_pred CCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCC
Q 047556 865 CDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLE 944 (1175)
Q Consensus 865 c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 944 (1175)
..|++|+.|.+.++. +..++. .+++|+.|++++|. ++.+|. .+++|+.|++++|. +.
T Consensus 259 ----------~lp~sL~~L~Ls~N~-L~~Lp~-------lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~-L~ 315 (788)
T PRK15387 259 ----------VLPPGLLELSIFSNP-LTHLPA-------LPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LA 315 (788)
T ss_pred ----------CcccccceeeccCCc-hhhhhh-------chhhcCEEECcCCc-cccccc---cccccceeECCCCc-cc
Confidence 123455555554432 333321 12356666666663 444543 34567777777764 33
Q ss_pred ccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCCCCCCcc
Q 047556 945 SIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNLV 1024 (1175)
Q Consensus 945 ~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~ 1024 (1175)
.+|....+|+.|.+++| .++.+|. ++.+|+.|++++| .++.+|.. .++|+.|++++| .+..+|. .+++|+
T Consensus 316 ~Lp~lp~~L~~L~Ls~N-~L~~LP~--lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~--l~~~L~ 385 (788)
T PRK15387 316 SLPALPSELCKLWAYNN-QLTSLPT--LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPA--LPSGLK 385 (788)
T ss_pred cCCCCcccccccccccC-ccccccc--cccccceEecCCC-ccCCCCCC---Ccccceehhhcc-ccccCcc--cccccc
Confidence 45554456666666654 4555542 4456777777664 45566643 346777777777 6666765 356788
Q ss_pred eEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCC
Q 047556 1025 ELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSL 1104 (1175)
Q Consensus 1025 ~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L 1104 (1175)
.|++++|....++. ..++|+.|++++|. +..+|. .+.+|+.|++++ |+++.+| ..+.++++|
T Consensus 386 ~LdLs~N~Lt~LP~-------l~s~L~~LdLS~N~---LssIP~------l~~~L~~L~Ls~-NqLt~LP-~sl~~L~~L 447 (788)
T PRK15387 386 ELIVSGNRLTSLPV-------LPSELKELMVSGNR---LTSLPM------LPSGLLSLSVYR-NQLTRLP-ESLIHLSSE 447 (788)
T ss_pred eEEecCCcccCCCC-------cccCCCEEEccCCc---CCCCCc------chhhhhhhhhcc-CcccccC-hHHhhccCC
Confidence 88887666554331 13568888888865 556663 345788888888 6788887 567788888
Q ss_pred CceeccCCC
Q 047556 1105 EFLWIDDCP 1113 (1175)
Q Consensus 1105 ~~L~l~~c~ 1113 (1175)
+.|+|++|+
T Consensus 448 ~~LdLs~N~ 456 (788)
T PRK15387 448 TTVNLEGNP 456 (788)
T ss_pred CeEECCCCC
Confidence 888888854
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.1e-14 Score=171.22 Aligned_cols=256 Identities=26% Similarity=0.340 Sum_probs=193.0
Q ss_pred CCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecC
Q 047556 809 SKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENC 888 (1175)
Q Consensus 809 ~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~ 888 (1175)
.+-..|+++++.+. .+|..+. ++|+.|.+.++ +++.+ + ..|++|++|+++++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N-~Lt~L----------------------P--~lp~~Lk~LdLs~N 252 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN-NLTSL----------------------P--ALPPELRTLEVSGN 252 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCC-cCCCC----------------------C--CCCCCCcEEEecCC
Confidence 34568899999775 5676443 57888888763 23322 2 24578999999875
Q ss_pred cCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccc
Q 047556 889 ENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLA 968 (1175)
Q Consensus 889 ~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~ 968 (1175)
+|+.++. .+++|+.|++++|. +..+|. .+++|+.|++++|. +..+|..+++|+.|+++++ +++.+|
T Consensus 253 -~LtsLP~-------lp~sL~~L~Ls~N~-L~~Lp~---lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N-~L~~Lp 318 (788)
T PRK15387 253 -QLTSLPV-------LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN-QLASLP 318 (788)
T ss_pred -ccCcccC-------cccccceeeccCCc-hhhhhh---chhhcCEEECcCCc-cccccccccccceeECCCC-ccccCC
Confidence 6666642 25689999999985 556665 45789999999985 5678888899999999986 677765
Q ss_pred cCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCCCCCCcceEEEeccCccchhhhhhhccCCCC
Q 047556 969 ERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRLT 1048 (1175)
Q Consensus 969 ~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~ 1048 (1175)
. .+.+|+.|.+++| .++.+|.. ..+|+.|++++| .++.+|. .+++|+.|++++|....++ . ..+
T Consensus 319 ~--lp~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~--lp~~L~~L~Ls~N~L~~LP----~---l~~ 382 (788)
T PRK15387 319 A--LPSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDN-QLASLPT--LPSELYKLWAYNNRLTSLP----A---LPS 382 (788)
T ss_pred C--CcccccccccccC-cccccccc---ccccceEecCCC-ccCCCCC--CCcccceehhhccccccCc----c---ccc
Confidence 4 5678999999886 45667742 358999999998 7888886 4789999999887766544 2 135
Q ss_pred CCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCC-CCCCCCc
Q 047556 1049 SLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPE-VGLPSSI 1127 (1175)
Q Consensus 1049 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~~sL 1127 (1175)
+|+.|++++|. +..+|. .+++|+.|++++ |.++.+|. . ..+|+.|++++ +.++.+|. ...+++|
T Consensus 383 ~L~~LdLs~N~---Lt~LP~------l~s~L~~LdLS~-N~LssIP~-l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L 447 (788)
T PRK15387 383 GLKELIVSGNR---LTSLPV------LPSELKELMVSG-NRLTSLPM-L---PSGLLSLSVYR-NQLTRLPESLIHLSSE 447 (788)
T ss_pred ccceEEecCCc---ccCCCC------cccCCCEEEccC-CcCCCCCc-c---hhhhhhhhhcc-CcccccChHHhhccCC
Confidence 79999999976 566774 457899999999 68998883 2 35789999998 67899987 3346799
Q ss_pred ceeeeccCch
Q 047556 1128 LWLNIWSCPM 1137 (1175)
Q Consensus 1128 ~~L~i~~cp~ 1137 (1175)
+.|++++||.
T Consensus 448 ~~LdLs~N~L 457 (788)
T PRK15387 448 TTVNLEGNPL 457 (788)
T ss_pred CeEECCCCCC
Confidence 9999999974
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=1.7e-16 Score=164.36 Aligned_cols=121 Identities=22% Similarity=0.308 Sum_probs=75.9
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchh-hhccCCCceeee
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLDI 679 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 679 (1175)
.-..++|..|.|+.+|+++|+.+++||.||||+|.|+.| |.+|.+|+.|-.|-+.+++.++.+|+. |++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 344566777777777777777777777777777777766 666777777766666664467777654 667777777776
Q ss_pred cCccccccCC-ccCCCCCCccccCceeeccCCCcc-Cccccccccc
Q 047556 680 TGAYLIKEMP-FGMKELKNLQALSNFIVGTGTRSS-GLKDLKSLTF 723 (1175)
Q Consensus 680 ~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~-~l~~l~~L~~ 723 (1175)
.-|. +..++ ..+..|++|..|.++.+....++. .+..+..++.
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence 6666 33333 336666666666666665444332 2334444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.6e-13 Score=165.05 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=62.7
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeec
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDIT 680 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 680 (1175)
.+...|+++++.++.+| ..+. .+|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP-~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIP-ACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCC-cccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 35788999999999888 4443 579999999999999988765 48999999988 6778887654 468888888
Q ss_pred CccccccCCc
Q 047556 681 GAYLIKEMPF 690 (1175)
Q Consensus 681 ~~~~~~~~p~ 690 (1175)
+|. +..+|.
T Consensus 250 ~N~-L~~LP~ 258 (754)
T PRK15370 250 INR-ITELPE 258 (754)
T ss_pred CCc-cCcCCh
Confidence 877 334553
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=4.1e-15 Score=154.18 Aligned_cols=117 Identities=23% Similarity=0.218 Sum_probs=101.8
Q ss_pred hhhHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecc-ccccccccc-ccCcccccEEeccCccccccCchh
Q 047556 590 DLVFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSH-TWIRNLPKS-TCSLINLQILLLRGCYYLLKLPSK 667 (1175)
Q Consensus 590 ~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~-~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~ 667 (1175)
..+++..|+.+++||.||||+|.|+.|.+++|.++..|-.|-+.+ |+|+.+|+. |++|..|+.|.+.-|+......+.
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 456788999999999999999999999999999999998887776 999999985 899999999999999544555677
Q ss_pred hhccCCCceeeecCccccccCCc-cCCCCCCccccCceeec
Q 047556 668 MRKLINLRHLDITGAYLIKEMPF-GMKELKNLQALSNFIVG 707 (1175)
Q Consensus 668 i~~L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~ 707 (1175)
+..|++|+.|.+..|. +..++. .+..+.+++++.+..+.
T Consensus 160 l~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 9999999999999998 677777 58889999998776653
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=9.6e-12 Score=161.26 Aligned_cols=292 Identities=14% Similarity=0.159 Sum_probs=181.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeC-CCCCHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVS-EDFDVLSISRA 260 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~ 260 (1175)
..+|-|..-.+.+ ... ...+++.|+|++|.||||++..+..+ ++.++|+++. .+.++..+...
T Consensus 14 ~~~~~R~rl~~~l----~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~-------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 14 HNTVVRERLLAKL----SGA-----NNYRLVLVTSPAGYGKTTLISQWAAG-------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred cccCcchHHHHHH----hcc-----cCCCeEEEECCCCCCHHHHHHHHHHh-------CCCeEEEecCcccCCHHHHHHH
Confidence 3566666554444 322 34589999999999999999998852 2368999996 44566777777
Q ss_pred HHHHhcCCCCC----c---------cchHHHHHHHHHHhc--CccEEEEEecCccCCcccHHHHhcc-cCCCCCCcEEEE
Q 047556 261 ILESITYSSCD----L---------KALNEVQVQLKKAVD--GKKIFLVLDDVWNEDYGLWEDLKAP-LMGAAPNSKIVV 324 (1175)
Q Consensus 261 il~~l~~~~~~----~---------~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~iiv 324 (1175)
++..++..... . .+.......+...+. +.+++|||||+...+......+... +.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77777422111 0 112222333333332 6899999999966543333333333 334456778989
Q ss_pred ecCChhhhh--hc-CCCCeeeCC----CCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 047556 325 TTRHSHVAS--TM-EPIQQYNLR----CLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLR 397 (1175)
Q Consensus 325 Ttr~~~v~~--~~-~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 397 (1175)
|||...-.. .. .......+. +|+.+|+.++|....... ...+...+|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999843211 11 112344555 999999999997654221 1123356799999999999999987775
Q ss_pred CCCHHHHHHHHhhcccCCCC--CCCchHHHHH-hhhcCChhhhhhhhhhccCCCCcccChhHHHHHHHHccCccccccCC
Q 047556 398 SKRHDAWDEILNSKILDLPQ--RNGILPALSL-SYHYLPSHLKRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNK 474 (1175)
Q Consensus 398 ~~~~~~w~~~~~~~~~~~~~--~~~i~~~l~~-sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 474 (1175)
..... ..... +.+.. ...+...+.- .++.||++.+..+...|+++ .++.+.+-.. ..
T Consensus 231 ~~~~~-~~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~------ 290 (903)
T PRK04841 231 QNNSS-LHDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG------ 290 (903)
T ss_pred hCCCc-hhhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC------
Confidence 54210 00111 11111 1235554433 48999999999999999995 4443322211 11
Q ss_pred CCHHHHHHHHHHHHHhCCCccc-cCCCCCceEEchhHHHHHHHHhc
Q 047556 475 KQPEVLGREYFHDLLSRSILQP-SSSNNSKFVMHDLVHDLAQLVSG 519 (1175)
Q Consensus 475 ~~~~~~~~~~~~~L~~~sll~~-~~~~~~~~~mHdlv~~~~~~~~~ 519 (1175)
.+.+...+++|.+.+++.. .+.+...|+.|++++++++....
T Consensus 291 ---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 ---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 1124677999999999653 33234579999999999987753
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=9.3e-13 Score=158.59 Aligned_cols=225 Identities=22% Similarity=0.366 Sum_probs=136.9
Q ss_pred CCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCC-CCCC
Q 047556 876 LPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGL-HNVQ 954 (1175)
Q Consensus 876 ~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~-~~L~ 954 (1175)
+|+.|+.|.++++ +++.++... +++|+.|++++|. ++.+|.. .+++|+.|++++|... .+|..+ .+|+
T Consensus 197 Ip~~L~~L~Ls~N-~LtsLP~~l------~~nL~~L~Ls~N~-LtsLP~~--l~~~L~~L~Ls~N~L~-~LP~~l~s~L~ 265 (754)
T PRK15370 197 IPEQITTLILDNN-ELKSLPENL------QGNIKTLYANSNQ-LTSIPAT--LPDTIQEMELSINRIT-ELPERLPSALQ 265 (754)
T ss_pred cccCCcEEEecCC-CCCcCChhh------ccCCCEEECCCCc-cccCChh--hhccccEEECcCCccC-cCChhHhCCCC
Confidence 3455666666553 444443211 3467777777663 5555553 2456777777777533 455544 3577
Q ss_pred EEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCCCCCCcceEEEeccCcc
Q 047556 955 RIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNLVELKIRGVDVK 1034 (1175)
Q Consensus 955 ~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~~~ 1034 (1175)
.|++++ ++++.+|. .++.+|+.|++++| .++.+|..+. ++|+.|++++| .+..+|.. .+++|+.|++.+|...
T Consensus 266 ~L~Ls~-N~L~~LP~-~l~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 266 SLDLFH-NKISCLPE-NLPEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPET-LPPGLKTLEAGENALT 338 (754)
T ss_pred EEECcC-CccCcccc-ccCCCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCcc-ccccceeccccCCccc
Confidence 777764 35666654 23457777777776 4566665442 46777888877 56666643 4567888887776655
Q ss_pred chhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCC
Q 047556 1035 MYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPN 1114 (1175)
Q Consensus 1035 ~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 1114 (1175)
.++.. + .++|+.|++++|. +..+|.. ++++|+.|+|++ |.++.+|. .+. .+|+.|++++ ++
T Consensus 339 ~LP~~----l--~~sL~~L~Ls~N~---L~~LP~~-----lp~~L~~LdLs~-N~Lt~LP~-~l~--~sL~~LdLs~-N~ 399 (754)
T PRK15370 339 SLPAS----L--PPELQVLDVSKNQ---ITVLPET-----LPPTITTLDVSR-NALTNLPE-NLP--AALQIMQASR-NN 399 (754)
T ss_pred cCChh----h--cCcccEEECCCCC---CCcCChh-----hcCCcCEEECCC-CcCCCCCH-hHH--HHHHHHhhcc-CC
Confidence 54432 2 2577888888765 4556642 356788888887 46777763 221 3677788887 45
Q ss_pred CCcCCCC-----CCCCCcceeeeccCch
Q 047556 1115 LKSFPEV-----GLPSSILWLNIWSCPM 1137 (1175)
Q Consensus 1115 l~~lp~~-----~~~~sL~~L~i~~cp~ 1137 (1175)
+..+|.. ...+++..|++.++|.
T Consensus 400 L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 400 LVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 6676651 1124567778877774
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=8.8e-13 Score=161.30 Aligned_cols=108 Identities=28% Similarity=0.308 Sum_probs=91.1
Q ss_pred cCCCccEEEecccc--cccCCCCccCCcccccEEEeccc-ccccccccccCcccccEEeccCccccccCchhhhccCCCc
Q 047556 599 KCRKLRVLSLSRSY--ITELPKGSMSGWKHLRYLNLSHT-WIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLR 675 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~--i~~l~~~~~~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 675 (1175)
.++.|++|-+.+|. +..++.+.|..++.|++|||++| .+.+||++|++|.+||+|+|+++ .+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 45579999999886 77777667888999999999966 67799999999999999999998 7889999999999999
Q ss_pred eeeecCccccccCCccCCCCCCccccCceeec
Q 047556 676 HLDITGAYLIKEMPFGMKELKNLQALSNFIVG 707 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~ 707 (1175)
+|++..+.....+|..+..|++|++|.++...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 99999887666666556669999999877654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=5.1e-14 Score=128.73 Aligned_cols=106 Identities=30% Similarity=0.307 Sum_probs=66.0
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceee
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLD 678 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 678 (1175)
.+.+++.|.||+|.++.+| ..|..+.+|+.|++++|+|+++|.+|+.+++|+.|+++-| .+..+|.+|+.++.|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~~vp-pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVP-PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecC-CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 4455566666677666666 3566666777777777777777777777777777776666 5666666677677777777
Q ss_pred ecCccccc-cCCccCCCCCCccccCceee
Q 047556 679 ITGAYLIK-EMPFGMKELKNLQALSNFIV 706 (1175)
Q Consensus 679 l~~~~~~~-~~p~~~~~L~~L~~L~~~~~ 706 (1175)
+++|++.. .+|..|-.|+.|+.|.+..+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCC
Confidence 66666432 34544544555555544433
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=7.7e-14 Score=127.58 Aligned_cols=130 Identities=28% Similarity=0.300 Sum_probs=115.6
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCcccc-ccCchhhhccC
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYL-LKLPSKMRKLI 672 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l-~~lp~~i~~L~ 672 (1175)
+.-+..+.+|.+|++++|+|+++| .+++.++.||.|++.-|.+..+|..|+.++-|++|||.+|+.. ..+|..|-.++
T Consensus 49 ppnia~l~nlevln~~nnqie~lp-~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIEELP-TSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred CCcHHHhhhhhhhhcccchhhhcC-hhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 444678999999999999999999 7999999999999999999999999999999999999998433 57899999999
Q ss_pred CCceeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccc
Q 047556 673 NLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLS 725 (1175)
Q Consensus 673 ~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~ 725 (1175)
.|+.|++++|. ...+|.++++|++||.|.+..+..-+.|..++.+..|+.|.
T Consensus 128 tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 128 TLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred HHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 99999999998 67899999999999999988887777777777777777664
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=4.7e-10 Score=129.86 Aligned_cols=300 Identities=13% Similarity=0.100 Sum_probs=176.9
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 180 TERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 180 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.++.++||+++++++...+...-.+ .....+.|+|++|+|||++++.++++..... ..-..+++++....+...++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCHHHHHH
Confidence 3457999999999999998553221 3345678999999999999999998654322 123457777777778889999
Q ss_pred HHHHHhcCC-CC-CccchHHHHHHHHHHhc--CccEEEEEecCccCC----cccHHHHhcccCCCCCCc--EEEEecCCh
Q 047556 260 AILESITYS-SC-DLKALNEVQVQLKKAVD--GKKIFLVLDDVWNED----YGLWEDLKAPLMGAAPNS--KIVVTTRHS 329 (1175)
Q Consensus 260 ~il~~l~~~-~~-~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs--~iivTtr~~ 329 (1175)
.++.++... .+ ...+.++....+.+.+. +++.+||||+++.-. .+.+..+...+... .++ .||.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCc
Confidence 999998752 21 22245566666666664 456899999996522 12233333322221 233 356666554
Q ss_pred hhhhhcC-------CCCeeeCCCCChhhhHHHHHhhhccC--CCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHh--c-
Q 047556 330 HVASTME-------PIQQYNLRCLSDEDCWSLFMMHAFVS--RDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLL--R- 397 (1175)
Q Consensus 330 ~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l--~- 397 (1175)
.+..... ....+.+.+++.++..+++..++... .....+...+.+++......|..+.|+.++-.+. +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4332211 12467899999999999998776321 1112333344444444444566788877764322 1
Q ss_pred --C--C-CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhhhhhhhhccCCC--CcccChhHHHHH--HHHccCcc
Q 047556 398 --S--K-RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLKRCFSYCAIFPK--DYDFEEKELVFL--WMAEGIIQ 468 (1175)
Q Consensus 398 --~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~--~~~i~~~~li~~--w~a~g~i~ 468 (1175)
+ . +.++...+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 264 ~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 1 1 556666555432 1123445688999998877765553321 123444444321 22221110
Q ss_pred ccccCCCCHHHHHHHHHHHHHhCCCcccc
Q 047556 469 ESRNNKKQPEVLGREYFHDLLSRSILQPS 497 (1175)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 497 (1175)
. .........|+.+|...++|...
T Consensus 335 ~-----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 E-----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C-----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 0 11123356688888888888753
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=1.4e-09 Score=118.84 Aligned_cols=181 Identities=22% Similarity=0.233 Sum_probs=116.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHH----H
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKK----A 285 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~ 285 (1175)
+++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..++..++.+... .........+.+ .
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQE--RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCC--Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 589999999999999999999865421 11 22333 334457788899999988775432 222222233322 2
Q ss_pred -hcCccEEEEEecCccCCcccHHHHhcccCC---CCCCcEEEEecCChhhhhhcC----------CCCeeeCCCCChhhh
Q 047556 286 -VDGKKIFLVLDDVWNEDYGLWEDLKAPLMG---AAPNSKIVVTTRHSHVASTME----------PIQQYNLRCLSDEDC 351 (1175)
Q Consensus 286 -l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~e~ 351 (1175)
..+++.++|+||+|.-+...++.+...... ......|++|.... ....+. ....+.+.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 267889999999987665566665432221 12233455665432 221111 134678999999999
Q ss_pred HHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 047556 352 WSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLL 396 (1175)
Q Consensus 352 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 396 (1175)
.+++...+...+.........+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764332211122334567889999999999999888776
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.16 E-value=6e-09 Score=119.31 Aligned_cols=300 Identities=13% Similarity=0.084 Sum_probs=171.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccccc---ceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKF---DIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~ 258 (1175)
+.++||+.++++|...+.....+ .....+.|+|++|+|||+++++++++........ -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 47999999999999998753211 3345789999999999999999998643211011 245788887777888999
Q ss_pred HHHHHHhc---CCCC-CccchHHHHHHHHHHh--cCccEEEEEecCccCC---cccHHHHhccc-CCCC--CCcEEEEec
Q 047556 259 RAILESIT---YSSC-DLKALNEVQVQLKKAV--DGKKIFLVLDDVWNED---YGLWEDLKAPL-MGAA--PNSKIVVTT 326 (1175)
Q Consensus 259 ~~il~~l~---~~~~-~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iivTt 326 (1175)
..+++++. ...+ ...+..+....+.+.+ .+++++||||+++.-. .+....+.... .... ....+|.++
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999984 3222 1123344455555555 3568899999996531 11122222221 1111 233445555
Q ss_pred CChhhhhhcC-------CCCeeeCCCCChhhhHHHHHhhhccC-CCCCcchhHHHHHHHHHHhcCCchH-HHHHHHHHh-
Q 047556 327 RHSHVASTME-------PIQQYNLRCLSDEDCWSLFMMHAFVS-RDLTAQQISDLFRDKVVGKCRGLPL-AAKALGGLL- 396 (1175)
Q Consensus 327 r~~~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~l- 396 (1175)
........+. ....+.+.+.+.++..+++..++... ......+...+...+++....|.|- |+.++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443322111 12468899999999999998876311 1111222222334456777778874 333322211
Q ss_pred ---c-C--C-CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhhhhhhhhccCC--CCcccChhHHHHHHH--Hcc
Q 047556 397 ---R-S--K-RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLKRCFSYCAIFP--KDYDFEEKELVFLWM--AEG 465 (1175)
Q Consensus 397 ---~-~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~i~~~~li~~w~--a~g 465 (1175)
. + . +.+....+.+.. -.....-++..||.+.+..+..++..- ++..+...++...+- ++.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~ 323 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCED 323 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh
Confidence 1 1 1 444444444321 012334566889998887666554221 333455565555221 221
Q ss_pred CccccccCCCCHHHHHHHHHHHHHhCCCcccc
Q 047556 466 IIQESRNNKKQPEVLGREYFHDLLSRSILQPS 497 (1175)
Q Consensus 466 ~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 497 (1175)
+... ........+++..|...|+|...
T Consensus 324 -~~~~----~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 324 -IGVD----PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred -cCCC----CCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111 23345677889999999999864
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=1.5e-09 Score=121.01 Aligned_cols=277 Identities=16% Similarity=0.142 Sum_probs=149.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
-..|+|++..++.+..++......+ ...+.+.|+|++|+|||++|+.+++.... .+ .++..+ .......+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~GppG~GKT~la~~ia~~l~~---~~---~~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRG-EALDHVLLYGPPGLGKTTLANIIANEMGV---NI---RITSGP-ALEKPGDLAA 95 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCccHHHHHHHHHHHhCC---Ce---EEEecc-cccChHHHHH
Confidence 3579999999999988876432211 34567889999999999999999986432 11 112211 1111122333
Q ss_pred HHHHhcCCC----CCccch-HHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhhhhc
Q 047556 261 ILESITYSS----CDLKAL-NEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTM 335 (1175)
Q Consensus 261 il~~l~~~~----~~~~~~-~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 335 (1175)
++..+.... ++.... ......+...+.+.+..+|+|+..+... +...++ +.+-|..|++...+...+
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l~---~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDLP---PFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecCC---CceEEeecCCcccCCHHH
Confidence 333332211 000000 1112223344444455555555432110 000111 245566677755443322
Q ss_pred C--CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCHHHHHHHHhhccc
Q 047556 336 E--PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSKRHDAWDEILNSKIL 413 (1175)
Q Consensus 336 ~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~~~~ 413 (1175)
. ....+.+++++.++..+++.+.+...+.. ...+....|++.|+|.|-.+..+...+ ..|...... .
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~~--~ 236 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKGD--G 236 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcCC--C
Confidence 1 12468999999999999999887543322 223457789999999996554444332 122221111 0
Q ss_pred CCCCC--CCchHHHHHhhhcCChhhhhhhh-hhccCCCCcccChhHHHHHHHHccCccccccCCCCHHHHHHHHHH-HHH
Q 047556 414 DLPQR--NGILPALSLSYHYLPSHLKRCFS-YCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQPEVLGREYFH-DLL 489 (1175)
Q Consensus 414 ~~~~~--~~i~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~-~L~ 489 (1175)
..... ......+...|..|++..+..+. ....|+.+ .+..+.+.... ......+++.++ .|+
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-------------g~~~~~~~~~~e~~Li 302 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-------------GEERDTIEDVYEPYLI 302 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-------------CCCcchHHHHhhHHHH
Confidence 01000 22334455667888887777775 66667655 45555554322 112223454555 799
Q ss_pred hCCCccccC
Q 047556 490 SRSILQPSS 498 (1175)
Q Consensus 490 ~~sll~~~~ 498 (1175)
+.+||+...
T Consensus 303 ~~~li~~~~ 311 (328)
T PRK00080 303 QQGFIQRTP 311 (328)
T ss_pred HcCCcccCC
Confidence 999997653
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=6.8e-10 Score=118.82 Aligned_cols=195 Identities=20% Similarity=0.231 Sum_probs=100.7
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH--
Q 047556 184 VFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI-- 261 (1175)
Q Consensus 184 ~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-- 261 (1175)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+..+.. .+ .++|+.......... +..+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~--~~-~~~y~~~~~~~~~~~-~~~~~~ 70 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEK--GY-KVVYIDFLEESNESS-LRSFIE 70 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhc--CC-cEEEEecccchhhhH-HHHHHH
Confidence 799999999999998763 23689999999999999999999865322 12 344554444332221 1111
Q ss_pred --------HHHhcCCCC----------CccchHHHHHHHHHHh--cCccEEEEEecCccCC------cccHHHHhcccCC
Q 047556 262 --------LESITYSSC----------DLKALNEVQVQLKKAV--DGKKIFLVLDDVWNED------YGLWEDLKAPLMG 315 (1175)
Q Consensus 262 --------l~~l~~~~~----------~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~------~~~~~~l~~~l~~ 315 (1175)
...+....+ ...........+.+.+ .+++++||+||+..-. ......+...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 71 ETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 111211110 0111222223333333 2345999999995432 1111222222222
Q ss_pred --CCCCcEEEEecCChhhhhh--------cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 316 --AAPNSKIVVTTRHSHVAST--------MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 316 --~~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
......+|+++....+... .+....+.+++|+.+++++++....... . .. +..++..++|++.+||+
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCC
Confidence 2233444455544444322 1233459999999999999998865332 1 11 12234458899999999
Q ss_pred hHHHHH
Q 047556 386 PLAAKA 391 (1175)
Q Consensus 386 Plai~~ 391 (1175)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998864
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=5e-09 Score=116.48 Aligned_cols=276 Identities=17% Similarity=0.089 Sum_probs=149.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..|||++..++++..++....... .....+.++|++|+|||+||+.+++.... .+ ..+..+...... .+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~~~~---~~---~~~~~~~~~~~~-~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANEMGV---NL---KITSGPALEKPG-DLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHhCC---CE---EEeccchhcCch-hHHHH
Confidence 469999999999998886432211 34456889999999999999999985432 11 112211111111 22222
Q ss_pred HHHhcCCC----CCccc-hHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhhhhcC
Q 047556 262 LESITYSS----CDLKA-LNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTME 336 (1175)
Q Consensus 262 l~~l~~~~----~~~~~-~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 336 (1175)
+..++... ++... .......+...+.+.+..+|+|+..... .| ...++ +.+-|..||+...+...+.
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecCC---CeEEEEecCCccccCHHHH
Confidence 33332211 00010 1122334555555566666666653321 11 11111 2456667777654433211
Q ss_pred --CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCHHHHHHHHhhcccC
Q 047556 337 --PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSKRHDAWDEILNSKILD 414 (1175)
Q Consensus 337 --~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~~~~~ 414 (1175)
....+.+++++.+|..+++.+.+...... ...+....|++.|+|.|-.+..++..+ |..........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~ 216 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKI 216 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCC
Confidence 23467899999999999999877533221 123456789999999997665444432 11110000000
Q ss_pred CCCC--CCchHHHHHhhhcCChhhhhhhh-hhccCCCCcccChhHHHHHHHHccCccccccCCCCHHHHHHHHHH-HHHh
Q 047556 415 LPQR--NGILPALSLSYHYLPSHLKRCFS-YCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQPEVLGREYFH-DLLS 490 (1175)
Q Consensus 415 ~~~~--~~i~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~-~L~~ 490 (1175)
.... ..+...+...|..++++.+..+. .++.++.+ .+..+.+.... ......++..++ .|++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-------------g~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-------------GEDADTIEDVYEPYLLQ 282 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-------------CCCcchHHHhhhHHHHH
Confidence 0000 12222345567888888777666 55666543 44444443322 122334666677 6999
Q ss_pred CCCccccC
Q 047556 491 RSILQPSS 498 (1175)
Q Consensus 491 ~sll~~~~ 498 (1175)
.+||+...
T Consensus 283 ~~li~~~~ 290 (305)
T TIGR00635 283 IGFLQRTP 290 (305)
T ss_pred cCCcccCC
Confidence 99997543
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.01 E-value=2.6e-08 Score=115.44 Aligned_cols=289 Identities=17% Similarity=0.208 Sum_probs=186.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC-CCCHHHHHHHHHHHhcCCCC
Q 047556 192 AKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE-DFDVLSISRAILESITYSSC 270 (1175)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~ 270 (1175)
.++.+.|... .+.+++.|..++|.|||||+.+.+.. .. .-..+.|.+++. +.++..+..-++..++.-.+
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~--~~--~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL--AA--DGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh--cC--cccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 4556666543 46799999999999999999999762 11 235789999875 45788999999988874332
Q ss_pred Ccc-------------chHHHHHHHHHHhc--CccEEEEEecCccCCccc-HHHHhcccCCCCCCcEEEEecCChhhhhh
Q 047556 271 DLK-------------ALNEVQVQLKKAVD--GKKIFLVLDDVWNEDYGL-WEDLKAPLMGAAPNSKIVVTTRHSHVAST 334 (1175)
Q Consensus 271 ~~~-------------~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~~~~-~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 334 (1175)
+.. +...+...+..-+. .++..+||||-.-..... -+.+...+.....+-..|||||.+.-...
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 211 22223333333332 468999999975433222 23344445566678999999998753321
Q ss_pred cC---CCCeeeCC----CCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCC-CHHHHHH
Q 047556 335 ME---PIQQYNLR----CLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSK-RHDAWDE 406 (1175)
Q Consensus 335 ~~---~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~ 406 (1175)
.. .....+++ .++.+|+.++|...... +..+.-.+.+.++.+|-+-|+..++-.++.. +.+.-..
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 11 12233332 47899999999877521 1112235779999999999999999888844 3333222
Q ss_pred HHhhcccCCCCCCCchH-HHHHhhhcCChhhhhhhhhhccCCCCcccChhHHHHHHHHccCccccccCCCCHHHHHHHHH
Q 047556 407 ILNSKILDLPQRNGILP-ALSLSYHYLPSHLKRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQPEVLGREYF 485 (1175)
Q Consensus 407 ~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~ 485 (1175)
.+.-. ...|.+ ...--++.||+++|.-++-+|+++. |. ..|+..- +-++.+...+
T Consensus 249 ~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L--------------tg~~ng~amL 304 (894)
T COG2909 249 GLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL--------------TGEENGQAML 304 (894)
T ss_pred hccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH--------------hcCCcHHHHH
Confidence 22100 011111 1223468999999999999999943 22 2333221 1123367789
Q ss_pred HHHHhCCCcc-ccCCCCCceEEchhHHHHHHHHhcc
Q 047556 486 HDLLSRSILQ-PSSSNNSKFVMHDLVHDLAQLVSGQ 520 (1175)
Q Consensus 486 ~~L~~~sll~-~~~~~~~~~~mHdlv~~~~~~~~~~ 520 (1175)
++|.+++++- +-+.....|+.|.+..+|.+.....
T Consensus 305 e~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 305 EELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 9999999865 4444678899999999999877654
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.91 E-value=6.9e-09 Score=113.43 Aligned_cols=162 Identities=23% Similarity=0.415 Sum_probs=87.0
Q ss_pred CCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCCCCCCcceEEEecc
Q 047556 952 NVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNLVELKIRGV 1031 (1175)
Q Consensus 952 ~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~ 1031 (1175)
+++.|++++| .++.+| .+|.+|++|.+++|..++.+|..+ .++|+.|++++|+.+..+ +++|+.|.+.++
T Consensus 53 ~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~n 122 (426)
T PRK15386 53 ASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIKGS 122 (426)
T ss_pred CCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEeCCC
Confidence 3444444444 444444 345555556666665665555544 246667777766555443 345666666555
Q ss_pred CccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccC
Q 047556 1032 DVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDD 1111 (1175)
Q Consensus 1032 ~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 1111 (1175)
.+..+.. +| ++|+.|.+.+++......+|. .+|++|+.|++++|..+. +| ..+. .+|+.|+++.
T Consensus 123 ~~~~L~~-LP------ssLk~L~I~~~n~~~~~~lp~-----~LPsSLk~L~Is~c~~i~-LP-~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 123 ATDSIKN-VP------NGLTSLSINSYNPENQARIDN-----LISPSLKTLSLTGCSNII-LP-EKLP--ESLQSITLHI 186 (426)
T ss_pred CCccccc-Cc------chHhheecccccccccccccc-----ccCCcccEEEecCCCccc-Cc-cccc--ccCcEEEecc
Confidence 5444331 11 245566664422111111221 467788888888876543 33 2222 4788888876
Q ss_pred CCCC-CcCCCCCCCCCcceeeeccCchhHH
Q 047556 1112 CPNL-KSFPEVGLPSSILWLNIWSCPMLEK 1140 (1175)
Q Consensus 1112 c~~l-~~lp~~~~~~sL~~L~i~~cp~L~~ 1140 (1175)
+... ..++...+|+++ .|++.+|..+..
T Consensus 187 n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 187 EQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred cccccccCccccccccc-EechhhhcccCH
Confidence 4311 134444567777 888888866544
No 33
>PF05729 NACHT: NACHT domain
Probab=98.89 E-value=1e-08 Score=102.91 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=89.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccc----cceEEEEEeCCCCCHH---HHHHHHHHHhcCCCCCccchHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFK----FDIKAWVCVSEDFDVL---SISRAILESITYSSCDLKALNEVQVQL 282 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l 282 (1175)
|++.|+|.+|+||||+++.++.+..... . +...+|+......... .+...+..+..... .........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE-PPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC-cccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHH
Confidence 5899999999999999999988654332 2 3466777765443322 33333333332221 1111111111
Q ss_pred HHHhcCccEEEEEecCccCCc--c-----cHHHHhcccCC--CCCCcEEEEecCChhh---hhhcCCCCeeeCCCCChhh
Q 047556 283 KKAVDGKKIFLVLDDVWNEDY--G-----LWEDLKAPLMG--AAPNSKIVVTTRHSHV---ASTMEPIQQYNLRCLSDED 350 (1175)
Q Consensus 283 ~~~l~~~r~LlVlDdv~~~~~--~-----~~~~l~~~l~~--~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~e 350 (1175)
.-+.++++||+|+++.-.. . .+..+...+.. ..++.+||||+|.... .........+.+.+|++++
T Consensus 77 --~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 --LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred --HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1257899999999965322 1 12222322222 2568999999998766 3333445689999999999
Q ss_pred hHHHHHhhh
Q 047556 351 CWSLFMMHA 359 (1175)
Q Consensus 351 ~~~lf~~~~ 359 (1175)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987653
No 34
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.84 E-value=4.9e-08 Score=120.78 Aligned_cols=312 Identities=18% Similarity=0.205 Sum_probs=181.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCC---HHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFD---VLSISR 259 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~---~~~~~~ 259 (1175)
.++||+.+++.|...+..... +...++.+.|..|||||+|+++|......+...|-...+-....... ....++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHH
Confidence 378999999999999876543 45579999999999999999999875432210221111111222222 223444
Q ss_pred HHHHHhcCCCC-------------------C----------------------ccchHH-----HHHHHHHHh-cCccEE
Q 047556 260 AILESITYSSC-------------------D----------------------LKALNE-----VQVQLKKAV-DGKKIF 292 (1175)
Q Consensus 260 ~il~~l~~~~~-------------------~----------------------~~~~~~-----~~~~l~~~l-~~~r~L 292 (1175)
+++.++..... . ...... ....+.... +.++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 44444411100 0 000000 111122222 456999
Q ss_pred EEEecCccCCcccHHHHhcccCCCC------CCcEEEEecCCh--hhhhhcCCCCeeeCCCCChhhhHHHHHhhhccCCC
Q 047556 293 LVLDDVWNEDYGLWEDLKAPLMGAA------PNSKIVVTTRHS--HVASTMEPIQQYNLRCLSDEDCWSLFMMHAFVSRD 364 (1175)
Q Consensus 293 lVlDdv~~~~~~~~~~l~~~l~~~~------~gs~iivTtr~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 364 (1175)
+|+||+.+.|....+-+...+.... +..-.+.|.+.. .+.........+.+.||+..+...+..........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~ 237 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL 237 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc
Confidence 9999997666555444433322221 112223333332 12222235578999999999999999877643222
Q ss_pred CCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCC-------CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhh
Q 047556 365 LTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSK-------RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLK 437 (1175)
Q Consensus 365 ~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-------~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 437 (1175)
...+....|+++.+|+|+.+..+-..+... +...|..-... ....+..+.+.+.+..-.+.||...+
T Consensus 238 -----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 238 -----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred -----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHHHHHHHHHHHhcCCHHHH
Confidence 223356789999999999999999888774 23334332211 11111113355568888999999999
Q ss_pred hhhhhhccCCCCcccChhHHHHHHHHccCccccccCCCCHHHHHHHHHHHHHhCCCccccC-----CCCCce---EEchh
Q 047556 438 RCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQPEVLGREYFHDLLSRSILQPSS-----SNNSKF---VMHDL 509 (1175)
Q Consensus 438 ~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~-----~~~~~~---~mHdl 509 (1175)
..+...|++ |..|+...|...|- +....++....+.|....++-..+ ...... ..||.
T Consensus 312 ~Vl~~AA~i--G~~F~l~~La~l~~------------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 312 EVLKAAACI--GNRFDLDTLAALAE------------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHh--CccCCHHHHHHHHh------------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 999999999 45666776665551 244555666555555544443211 111222 57899
Q ss_pred HHHHHHHH
Q 047556 510 VHDLAQLV 517 (1175)
Q Consensus 510 v~~~~~~~ 517 (1175)
|++.|-..
T Consensus 378 vqqaaY~~ 385 (849)
T COG3899 378 VQQAAYNL 385 (849)
T ss_pred HHHHHhcc
Confidence 98887543
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.82 E-value=3.7e-07 Score=106.74 Aligned_cols=301 Identities=13% Similarity=0.082 Sum_probs=163.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccc--cccc--ceEEEEEeCCCCCHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVE--TFKF--DIKAWVCVSEDFDVLS 256 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f--~~~~wv~~s~~~~~~~ 256 (1175)
++.+.||++++++|...|...-.+. ....++.|+|++|+|||+.++.|.+..+.. .... -.+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 3468899999999999887643211 233678899999999999999998754211 1011 1357787777778888
Q ss_pred HHHHHHHHhcCCCCC-ccchHHHHHHHHHHhc---CccEEEEEecCccCCcccHHHHhcccCC-CCCCcEEEE--ecCCh
Q 047556 257 ISRAILESITYSSCD-LKALNEVQVQLKKAVD---GKKIFLVLDDVWNEDYGLWEDLKAPLMG-AAPNSKIVV--TTRHS 329 (1175)
Q Consensus 257 ~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~---~~r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--Ttr~~ 329 (1175)
++..|..++....+. .....+....+...+. +...+||||+++.-....-+.+...+.+ ...+++|+| ++.+-
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999888544322 2222333444444431 2346899999953211111223222221 224555544 33322
Q ss_pred h--------hhhhcCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCC--
Q 047556 330 H--------VASTMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSK-- 399 (1175)
Q Consensus 330 ~--------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-- 399 (1175)
+ +...++ ...+...|.+.++-.+++..++......-.+...+-+|+.+++.-|-.=.||.++-.+....
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 2 222222 23467799999999999998875432223444455555555554455566666655444321
Q ss_pred ---CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhhhhhhhhccCCC---CcccChhHHHHHH--HHc--c-Ccc
Q 047556 400 ---RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLKRCFSYCAIFPK---DYDFEEKELVFLW--MAE--G-IIQ 468 (1175)
Q Consensus 400 ---~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~---~~~i~~~~li~~w--~a~--g-~i~ 468 (1175)
..++-..+.... -...+.-....||.+.|-.+..+...-+ ...++...+.... +++ | .+.
T Consensus 992 skVT~eHVrkAleei---------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iG 1062 (1164)
T PTZ00112 992 QKIVPRDITEATNQL---------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIG 1062 (1164)
T ss_pred CccCHHHHHHHHHHH---------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcC
Confidence 223333332211 0112233446788887765553332211 1134444443321 222 1 111
Q ss_pred ccccCCCCHHHHHHHHHHHHHhCCCcccc
Q 047556 469 ESRNNKKQPEVLGREYFHDLLSRSILQPS 497 (1175)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 497 (1175)
.. ...+ ....++.+|...|+|...
T Consensus 1063 v~----plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1063 MC----SNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred CC----CcHH-HHHHHHHHHHhcCeEEec
Confidence 11 2222 566777888888877654
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=1.5e-09 Score=122.22 Aligned_cols=111 Identities=24% Similarity=0.157 Sum_probs=58.6
Q ss_pred HhhhcCCCccEEEeccccccc-----CCCCccCCcccccEEEeccccccc-------ccccccCcccccEEeccCccccc
Q 047556 595 NLLSKCRKLRVLSLSRSYITE-----LPKGSMSGWKHLRYLNLSHTWIRN-------LPKSTCSLINLQILLLRGCYYLL 662 (1175)
Q Consensus 595 ~~~~~~~~Lr~L~Ls~~~i~~-----l~~~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~ 662 (1175)
..|..+..|+.|+++++.++. ++ ..+...+.|++|+++++.+.. ++..+.++++|+.|++++|....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 345555566666666666532 22 334455556666666655442 23445556667777776664433
Q ss_pred cCchhhhccCC---CceeeecCccccc----cCCccCCCC-CCccccCceee
Q 047556 663 KLPSKMRKLIN---LRHLDITGAYLIK----EMPFGMKEL-KNLQALSNFIV 706 (1175)
Q Consensus 663 ~lp~~i~~L~~---L~~L~l~~~~~~~----~~p~~~~~L-~~L~~L~~~~~ 706 (1175)
..+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++..+
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 44444544444 6777776665321 112223344 55555554444
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=3.1e-07 Score=96.38 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=94.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
+.+.++|++|+|||+||+++++....+ ...+.|+++... .... ..+.+.++ +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~---~~~~---------------------~~~~~~~~-~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKS---QYFS---------------------PAVLENLE-Q 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHh---hhhh---------------------HHHHhhcc-c
Confidence 578999999999999999999864332 234566665311 0000 01111122 3
Q ss_pred cEEEEEecCccCC-cccHHH-HhcccCCC-CCCcEEEE-ecCC---------hhhhhhcCCCCeeeCCCCChhhhHHHHH
Q 047556 290 KIFLVLDDVWNED-YGLWED-LKAPLMGA-APNSKIVV-TTRH---------SHVASTMEPIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 290 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-Ttr~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 356 (1175)
.-+||+||+|... ...|+. +...+... ..|..||| |++. +.+...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3589999998642 235553 32323222 23555554 5543 3555666667789999999999999999
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHH
Q 047556 357 MHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGG 394 (1175)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 394 (1175)
+.+....-. ..+++..-|++++.|..-++..+-.
T Consensus 172 ~~a~~~~l~----l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 172 RNAYQRGIE----LSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 888644321 2234567788999887766655433
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.63 E-value=7e-09 Score=116.87 Aligned_cols=91 Identities=23% Similarity=0.150 Sum_probs=45.8
Q ss_pred HHhhhcCCCccEEEecccccccCC------CCccCCcccccEEEecccccc-cccccccCccc---ccEEeccCcccc--
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELP------KGSMSGWKHLRYLNLSHTWIR-NLPKSTCSLIN---LQILLLRGCYYL-- 661 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~------~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~~l-- 661 (1175)
...+...++|+.|+++++.+...+ ...+..+++|++|++++|.+. ..+..+..+.+ |++|++++|...
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH
Confidence 344555556666666665544211 123445556666666666554 23333433333 666666666322
Q ss_pred --ccCchhhhcc-CCCceeeecCccc
Q 047556 662 --LKLPSKMRKL-INLRHLDITGAYL 684 (1175)
Q Consensus 662 --~~lp~~i~~L-~~L~~L~l~~~~~ 684 (1175)
..+...+..+ ++|+.|++++|.+
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 1222334444 5666666666653
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=1.9e-08 Score=98.45 Aligned_cols=104 Identities=23% Similarity=0.258 Sum_probs=29.6
Q ss_pred cCCCccEEEecccccccCCCCccC-CcccccEEEecccccccccccccCcccccEEeccCccccccCchhh-hccCCCce
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMS-GWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKM-RKLINLRH 676 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~ 676 (1175)
+...+|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..+++.+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc--chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCE
Confidence 4445677777777777664 344 4667777777777777764 4666777777777777 566665544 35677777
Q ss_pred eeecCccccccCC--ccCCCCCCccccCceeec
Q 047556 677 LDITGAYLIKEMP--FGMKELKNLQALSNFIVG 707 (1175)
Q Consensus 677 L~l~~~~~~~~~p--~~~~~L~~L~~L~~~~~~ 707 (1175)
|++++|.+ ..+. ..+..+++|+.|++..+.
T Consensus 93 L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 93 LYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EECcCCcC-CChHHhHHHHcCCCcceeeccCCc
Confidence 77777763 2221 223445555555554443
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.62 E-value=2.4e-07 Score=98.55 Aligned_cols=171 Identities=21% Similarity=0.246 Sum_probs=102.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
+.+++|-...+.++++ . +.+.-..+||++|+||||||+.+...... .| ..++...+-.+-+++
T Consensus 29 Q~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~~~~~---~f-----~~~sAv~~gvkdlr~ 91 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAGTTNA---AF-----EALSAVTSGVKDLRE 91 (436)
T ss_pred hHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHHhhCC---ce-----EEeccccccHHHHHH
Confidence 3445555555554443 2 46677899999999999999999974322 33 334433333333333
Q ss_pred HHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE--ecCChhhhh---hc
Q 047556 261 ILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV--TTRHSHVAS---TM 335 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~---~~ 335 (1175)
+++.. -+....+++.+|++|.|..-+..+-+.+ ||.-..|.-|+| ||.++...- ..
T Consensus 92 i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 92 IIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 33321 1223358999999999965433333333 445556777776 777765421 22
Q ss_pred CCCCeeeCCCCChhhhHHHHHhhhccCCCCCc---chhHHHHHHHHHHhcCCchH
Q 047556 336 EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTA---QQISDLFRDKVVGKCRGLPL 387 (1175)
Q Consensus 336 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~---~~~~~~~~~~i~~~c~glPl 387 (1175)
.-..++.+++|+.+|-.+++.+.+......-. ....++....+++.++|---
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 34578999999999999999884322211111 11223455678888888543
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=6.1e-10 Score=117.56 Aligned_cols=297 Identities=19% Similarity=0.240 Sum_probs=162.3
Q ss_pred CCccEEeeccCcCcceeccc----cccccceEEEccCCcccccccc---CCCCCccEEEEecCcCchhhhcCccccCCCC
Q 047556 833 SSLKMLEIHNCKNLQHLVDE----NNLQLESLRITSCDSLTFIARR---KLPSSLKRLEIENCENLQHLVYGEEDATSSS 905 (1175)
Q Consensus 833 ~~L~~L~L~~~~~l~~l~~~----~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 905 (1175)
..|+.|.+.||.....-... ...+++.|.+.+|..++..... ..-++|+.+.+..|.+++...+.. ...++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~--la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY--LAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH--HHHhh
Confidence 46788888887765443322 2345777777777766654322 222566666777777666554431 22346
Q ss_pred CCcCeEEeecCCCCCcC--CCCCCCcCccceEEeecCCCCCc-----cCCCCCCCCEEeeCCCCCccccccCCCCCCccE
Q 047556 906 VTLKRLGIRRCPELTSL--SPGIRLPEALEQLYIWDCQKLES-----IPDGLHNVQRIDIQRCPSLVSLAERGLPITISS 978 (1175)
Q Consensus 906 ~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~~~~l~~-----~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~ 978 (1175)
++|++|.+++|+.++.- .........++.+.+.+|...+. .....+. +..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~-----------------------i~~ 272 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE-----------------------ILK 272 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChH-----------------------hhc
Confidence 77777777777665531 01111223344444444433211 0111122 233
Q ss_pred EEEccCcccccCc--cccCCCCcccEEEeeCCCCCCCCCCC---CCCCCcceEEEeccCccchhhhhhhcc-CCCCCCCe
Q 047556 979 VRIWSCEKLEALP--NDLHKLNSLEHLYLQRCPSIVRFPEE---GFPNNLVELKIRGVDVKMYKAAIQWGL-HRLTSLRR 1052 (1175)
Q Consensus 979 L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~~~~~~l~~~~~~~l-~~l~~L~~ 1052 (1175)
+++..|..++... ..-..+..|+.|+.++|..+++.+-. ....+|+.|.+. .|..++......+ .+.+.|+.
T Consensus 273 lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~--~c~~fsd~~ft~l~rn~~~Le~ 350 (483)
T KOG4341|consen 273 LNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS--GCQQFSDRGFTMLGRNCPHLER 350 (483)
T ss_pred cchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc--ccchhhhhhhhhhhcCChhhhh
Confidence 3334444433221 11235666677777766554442211 234566666666 4444443321111 34678888
Q ss_pred eEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCc----CCCCCCCCCCceeccCCCCCCcCC--CCCCCCC
Q 047556 1053 LWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSS----KGFQSLTSLEFLWIDDCPNLKSFP--EVGLPSS 1126 (1175)
Q Consensus 1053 L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~----~~l~~l~~L~~L~l~~c~~l~~lp--~~~~~~s 1126 (1175)
+++.+|....-..+-.- ....+.|+.|.+++|..+++... ..-.++..|+.|.+++||.+..-. ....-++
T Consensus 351 l~~e~~~~~~d~tL~sl---s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASL---SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hcccccceehhhhHhhh---ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 88888654421112111 13457788888888877766521 222456779999999999876532 2223468
Q ss_pred cceeeeccCchhHHhhccCCCCCCccccCcceEEECCee
Q 047556 1127 ILWLNIWSCPMLEKEYKRDTGKEWSKIATIPRVCIDGKF 1165 (1175)
Q Consensus 1127 L~~L~i~~cp~L~~~~~~~~g~~~~~i~~i~~~~i~~~~ 1165 (1175)
|+.+++.+|....+..-+ +-..|.|++.+...+
T Consensus 428 Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAIS------RFATHLPNIKVHAYF 460 (483)
T ss_pred cceeeeechhhhhhhhhH------HHHhhCccceehhhc
Confidence 999999999887654221 234578998887754
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=4.9e-09 Score=114.90 Aligned_cols=175 Identities=25% Similarity=0.249 Sum_probs=124.7
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceee
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLD 678 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 678 (1175)
.+..-...||+.|.+..+| ..++.+..|..|.|+.|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|-
T Consensus 73 ~ltdt~~aDlsrNR~~elp-~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELP-EEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred cccchhhhhccccccccCc-hHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence 3445556788888888888 6778888888888888888888888888888888888888 7788888887775 78888
Q ss_pred ecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccc
Q 047556 679 ITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSL 758 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 758 (1175)
+++|+ ++.+|.+++.+..|..|+...+.....++.++.+.+|+.|. +
T Consensus 150 ~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~--------------------------------v 196 (722)
T KOG0532|consen 150 VSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN--------------------------------V 196 (722)
T ss_pred EecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH--------------------------------H
Confidence 88877 77888888877788888877777666665566655555442 1
Q ss_pred ccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCC
Q 047556 759 QWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENC 822 (1175)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 822 (1175)
..+.. ...++.+. .-.|..|+++.|....+|-.+.. +..|++|.|.+|.+.
T Consensus 197 rRn~l----------~~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 197 RRNHL----------EDLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhh----------hhCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCC
Confidence 10000 00111122 12366778888888888877775 788888888888763
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=1.7e-07 Score=89.56 Aligned_cols=118 Identities=22% Similarity=0.266 Sum_probs=81.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccc--cccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVET--FKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
-+++.|+|.+|+|||++++.+.++..... ..-..++|+.+....+...+...++.+++.......+.+++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 37899999999999999999998643210 0034567999988889999999999999988766456666677777777
Q ss_pred cCcc-EEEEEecCccC-CcccHHHHhcccCCCCCCcEEEEecCC
Q 047556 287 DGKK-IFLVLDDVWNE-DYGLWEDLKAPLMGAAPNSKIVVTTRH 328 (1175)
Q Consensus 287 ~~~r-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 328 (1175)
...+ .+||+|+++.- +...++.+..... ..+.+||++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6554 59999999654 4344445544333 567778877665
No 44
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.55 E-value=1.4e-07 Score=101.26 Aligned_cols=292 Identities=19% Similarity=0.206 Sum_probs=189.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVD 287 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1175)
..+.+.++|.|||||||++-.+.. .+. . +-+.+.++...+-.+...+.-.+...++...... +.....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~-~-~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS-E-YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh-h-cccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 458899999999999999999887 222 1 3456667777777777777777777777654321 223334555667
Q ss_pred CccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhhhhcCCCCeeeCCCCChh-hhHHHHHhhhccCCCC-
Q 047556 288 GKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTMEPIQQYNLRCLSDE-DCWSLFMMHAFVSRDL- 365 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~~~- 365 (1175)
++|.++|+||...- .+.-..+...+..+...-.|+.|+|..... .....+.+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998321 123333444455566666788898866543 34566778888765 7889987765332221
Q ss_pred CcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCHHHHHHHHhhcccCCCC--------CCCchHHHHHhhhcCChhhh
Q 047556 366 TAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSKRHDAWDEILNSKILDLPQ--------RNGILPALSLSYHYLPSHLK 437 (1175)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~~~~~~~~--------~~~i~~~l~~sy~~L~~~~k 437 (1175)
.-.........+|.++.+|.|++|..+++..+.-...+....++.....+.. .......+.+||.-|..-.+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 1112223456789999999999999999999887555554444432111111 15567789999999999999
Q ss_pred hhhhhhccCCCCcccChhHHHHHHHHccCccccccCCCCHHHHHHHHHHHHHhCCCccccCC-CCCceEEchhHHHHHHH
Q 047556 438 RCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQPEVLGREYFHDLLSRSILQPSSS-NNSKFVMHDLVHDLAQL 516 (1175)
Q Consensus 438 ~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~-~~~~~~mHdlv~~~~~~ 516 (1175)
..|--++.|...+.... ..|.+-|-.. ..+.-.....+..+++.+++..... +...|+.-+-+|.|+..
T Consensus 243 ~~~~rLa~~~g~f~~~l----~~~~a~g~~~------~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 243 ALFGRLAVFVGGFDLGL----ALAVAAGADV------DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHhcchhhhhhhhcccH----HHHHhcCCcc------ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999987766542 2344433211 1122234455677888888765432 33456666667777665
Q ss_pred Hhc
Q 047556 517 VSG 519 (1175)
Q Consensus 517 ~~~ 519 (1175)
+..
T Consensus 313 eL~ 315 (414)
T COG3903 313 ELH 315 (414)
T ss_pred HHH
Confidence 544
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=4.2e-08 Score=95.98 Aligned_cols=104 Identities=31% Similarity=0.362 Sum_probs=52.2
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccc-cCcccccEEeccCccccccCc--hhhhccCCCc
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKST-CSLINLQILLLRGCYYLLKLP--SKMRKLINLR 675 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~ 675 (1175)
.+.+|++|+|++|.|+.+. .+..+++|++|++++|.|+.+++.+ ..+++|+.|+|++| .+..+- ..+..+++|+
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcc
Confidence 5789999999999999986 5889999999999999999997766 46999999999999 565443 3477899999
Q ss_pred eeeecCccccccCCc----cCCCCCCccccCceee
Q 047556 676 HLDITGAYLIKEMPF----GMKELKNLQALSNFIV 706 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~----~~~~L~~L~~L~~~~~ 706 (1175)
+|++.+|.+. ..+. -+..+++|+.|+...+
T Consensus 117 ~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 117 VLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEET
T ss_pred eeeccCCccc-chhhHHHHHHHHcChhheeCCEEc
Confidence 9999999854 3332 1455666776665544
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.54 E-value=3.3e-07 Score=100.50 Aligned_cols=57 Identities=26% Similarity=0.670 Sum_probs=32.7
Q ss_pred CCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCC-CCCCEEeeCCCCCcc
Q 047556 905 SVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGL-HNVQRIDIQRCPSLV 965 (1175)
Q Consensus 905 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~-~~L~~L~l~~~~~L~ 965 (1175)
+.+++.|++++| .++.+|. .+++|+.|.+++|..+..+|..+ ++|+.|.+++|..+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS 108 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc
Confidence 345667777766 5555552 45566666666666665555443 245555555554443
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=1e-07 Score=76.34 Aligned_cols=58 Identities=33% Similarity=0.442 Sum_probs=49.2
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCc
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGC 658 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 658 (1175)
++|++|++++|.++.+|++.|.++++|++|++++|.++.+|. .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 468888898888888888888888888999888888888854 6788888888888887
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=7.2e-08 Score=111.80 Aligned_cols=183 Identities=27% Similarity=0.292 Sum_probs=130.5
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcc-cccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCc
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWK-HLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLR 675 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 675 (1175)
+..++.+..|++.+|.++.++ .....+. +|++|++++|.+..+|..+..+++|+.|++++| .+..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCc-cccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 345588999999999999998 5667774 999999999999999989999999999999999 8999998888999999
Q ss_pred eeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccc
Q 047556 676 HLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEA 755 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 755 (1175)
.|++++|. +..+|..+..+..|++|.+..+.....+..+..+.++..+.
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~------------------------------ 238 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE------------------------------ 238 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc------------------------------
Confidence 99999999 77888777777778888776664222222333333333221
Q ss_pred cccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCC
Q 047556 756 LSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPS 827 (1175)
Q Consensus 756 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~ 827 (1175)
+..+... .....+..+++++.|+++++.+..++. +.. +.+++.|+++++.+...+|.
T Consensus 239 --l~~n~~~----------~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~--~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 239 --LSNNKLE----------DLPESIGNLSNLETLDLSNNQISSISS-LGS--LTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred --cCCceee----------eccchhccccccceecccccccccccc-ccc--cCccCEEeccCccccccchh
Confidence 1000000 002233445667777777777776666 432 67777777777776655444
No 49
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=1.1e-06 Score=101.11 Aligned_cols=177 Identities=20% Similarity=0.237 Sum_probs=103.7
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAK---ILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~---l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
+.+||++..+.. +..++.. .....+.++|++|+||||+|+.+++.... .| +.++....-...+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~~~---~~-----~~l~a~~~~~~~i 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGATDA---PF-----EALSAVTSGVKDL 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHhCC---CE-----EEEecccccHHHH
Confidence 358888777555 6666654 33457889999999999999999885322 22 2222211111112
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE--ecCChhhh--h
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV--TTRHSHVA--S 333 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~--~ 333 (1175)
+++++. ... ...+++.+|++|+++.-...+.+.+...+. .|..++| ||.+.... .
T Consensus 78 r~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 222221 111 124678899999998655455555555443 2444444 34443211 1
Q ss_pred -hcCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHH
Q 047556 334 -TMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALG 393 (1175)
Q Consensus 334 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1175)
.......+.+.+++.++.++++.+.+..... .......+....|++.|+|.+..+..+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1122367899999999999999876532111 0001223456788999999987665443
No 50
>PTZ00202 tuzin; Provisional
Probab=98.48 E-value=4.3e-06 Score=90.85 Aligned_cols=168 Identities=13% Similarity=0.177 Sum_probs=105.8
Q ss_pred CCCCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 176 SSVPTERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 176 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
..+++.+.|+||+.+++++...|.+... ...+++.|+|++|+|||||++.+.... + ...++.-.. +..
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l-----~--~~qL~vNpr--g~e 323 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKE-----G--MPAVFVDVR--GTE 323 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcC-----C--ceEEEECCC--CHH
Confidence 3445567899999999999999975433 334699999999999999999998642 2 123332222 679
Q ss_pred HHHHHHHHHhcCCCCCc--cchHHHHHHHHHHh-c-CccEEEEEecCccCCcccHHHHh---cccCCCCCCcEEEEecCC
Q 047556 256 SISRAILESITYSSCDL--KALNEVQVQLKKAV-D-GKKIFLVLDDVWNEDYGLWEDLK---APLMGAAPNSKIVVTTRH 328 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~l-~-~~r~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~iivTtr~ 328 (1175)
++++.++.++|.+.... .-.+.+.+.+.+.- . +++.+||+-==.. +....+. ..+.....-|+|++---.
T Consensus 324 ElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evpl 400 (550)
T PTZ00202 324 DTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehH
Confidence 99999999999743221 12233444443322 3 6777777653211 1222221 123344456888876655
Q ss_pred hhhhhhc---CCCCeeeCCCCChhhhHHHHHhh
Q 047556 329 SHVASTM---EPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 329 ~~v~~~~---~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
+.+.-.. .-...|.+..++.++|.++-.+.
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 5433221 12356889999999998876654
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=3.3e-08 Score=99.54 Aligned_cols=195 Identities=17% Similarity=0.138 Sum_probs=127.3
Q ss_pred CCCCCCcCccceEEeecCCCC--CccCCCCCCCCEEeeCCCCCccccccCCCC-CCccEEEEccCc-c--cccCccccCC
Q 047556 923 SPGIRLPEALEQLYIWDCQKL--ESIPDGLHNVQRIDIQRCPSLVSLAERGLP-ITISSVRIWSCE-K--LEALPNDLHK 996 (1175)
Q Consensus 923 ~~~~~~~~~L~~L~l~~~~~l--~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~-~~L~~L~l~~~~-~--l~~lp~~~~~ 996 (1175)
|..+..+.+|+.+.++.|..- ..+-..-|.|+.+.+.+.. ....+. -.| ..+. +.+.-. . -+.+-..+..
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~-~~~~~~-l~pe~~~~--D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTT-IQDVPS-LLPETILA--DPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred ccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccc-cccccc-ccchhhhc--CccCCCCCccCCceEEecch
Confidence 334446678999999988632 2222223666766654321 111000 000 0000 000000 0 0111223456
Q ss_pred CCcccEEEeeCCCCCCCCCCCC-CCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccC
Q 047556 997 LNSLEHLYLQRCPSIVRFPEEG-FPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMML 1075 (1175)
Q Consensus 997 l~~L~~L~l~~c~~l~~lp~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 1075 (1175)
...|++||+|+| .++.+.+.. +.|.++.|+++.|++..+. .++.|++|+.|++++|. +..+.... .-
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~-----nLa~L~~L~~LDLS~N~---Ls~~~Gwh---~K 350 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQ-----NLAELPQLQLLDLSGNL---LAECVGWH---LK 350 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeeh-----hhhhcccceEeecccch---hHhhhhhH---hh
Confidence 778999999999 777776553 5689999999988877665 46789999999999965 44443322 24
Q ss_pred CCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCC---CCCCCCcceeeeccCch
Q 047556 1076 PTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPE---VGLPSSILWLNIWSCPM 1137 (1175)
Q Consensus 1076 ~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~---~~~~~sL~~L~i~~cp~ 1137 (1175)
+-+.+.|.+++ |.+++++ ++..|.+|..|++++ ++++.+.+ .|.+|.|+++.+.++|.
T Consensus 351 LGNIKtL~La~-N~iE~LS--GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 351 LGNIKTLKLAQ-NKIETLS--GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hcCEeeeehhh-hhHhhhh--hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 56889999999 8899986 899999999999999 67777654 66778999999999884
No 52
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.44 E-value=1.7e-06 Score=91.52 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=98.3
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhc
Q 047556 187 RHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESIT 266 (1175)
Q Consensus 187 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 266 (1175)
.+..++.+.+++.. ...+.+.|+|++|+|||+||+.+++.... .....++++++.-... ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~~---~~------- 82 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQA---DP------- 82 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHHh---HH-------
Confidence 34456666666542 23368899999999999999999975432 2234456654422110 00
Q ss_pred CCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcc-cH-HHHhcccCC-CCCCcEEEEecCChh---------hhhh
Q 047556 267 YSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYG-LW-EDLKAPLMG-AAPNSKIVVTTRHSH---------VAST 334 (1175)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~ 334 (1175)
.+...+.+ .-+||+||++.-... .| +.+...+.. ...+.+||+||+... +...
T Consensus 83 --------------~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 83 --------------EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred --------------HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 11111222 238999999653322 23 334333322 123457888887532 1222
Q ss_pred cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHH
Q 047556 335 MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALG 393 (1175)
Q Consensus 335 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1175)
+.....+++.++++++...++...+...... ...+..+.+++.+.|.|..+..+.
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHH
Confidence 2234678999999999899887654322211 123345678888999998776654
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=98.43 E-value=2.1e-05 Score=92.58 Aligned_cols=246 Identities=14% Similarity=0.140 Sum_probs=137.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++++.+|+..... + ...+.+.|+|++|+||||+|++++++.. ++ ++-++++..... ..+..+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~-g-~~~~~lLL~GppG~GKTtla~ala~el~-----~~-~ielnasd~r~~-~~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK-G-KPKKALLLYGPPGVGKTSLAHALANDYG-----WE-VIELNASDQRTA-DVIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc-C-CCCCeEEEECCCCCCHHHHHHHHHHHcC-----CC-EEEEcccccccH-HHHHHH
Confidence 4699999999999999865321 1 2357899999999999999999998642 22 223344432222 222333
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCc----ccHHHHhcccCCCCCCcEEEEecCChh-hhh-hc
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDY----GLWEDLKAPLMGAAPNSKIVVTTRHSH-VAS-TM 335 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~ 335 (1175)
+....... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... ..
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 22221110 00113678999999965321 335555554442 2345666664432 111 11
Q ss_pred -CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCC----CHHHHHHHHhh
Q 047556 336 -EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSK----RHDAWDEILNS 410 (1175)
Q Consensus 336 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~----~~~~w~~~~~~ 410 (1175)
.....+.+.+++.++....+...+...+.... .++...|++.++|-.-.+......+... +.+....+...
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRR 224 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcC
Confidence 23367889999999988888776643332222 2356789999999766554433333332 34444333321
Q ss_pred cccCCCCCCCchHHHHHhhh-cCChhhhhhhhhhccCCCCcccChhHHHHHHHHccCccc
Q 047556 411 KILDLPQRNGILPALSLSYH-YLPSHLKRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQE 469 (1175)
Q Consensus 411 ~~~~~~~~~~i~~~l~~sy~-~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~ 469 (1175)
.....++.++..-+. .-.......+.. ..++. ..+-.|+.+.+...
T Consensus 225 -----d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 225 -----DREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 111456666665554 222223222211 22333 34668999999764
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=6e-06 Score=91.60 Aligned_cols=179 Identities=19% Similarity=0.205 Sum_probs=116.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccc---ccccccceEEEEEe-CCCCCHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKE---VETFKFDIKAWVCV-SEDFDVLSI 257 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-s~~~~~~~~ 257 (1175)
.+++|-+..++.+...+..+ .-.....++|+.|+||||+|+.+++..- ..+.++|...|... +.......
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789888899999998654 2336778999999999999999887421 11115666555542 22222222
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhh-hh-c
Q 047556 258 SRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVA-ST-M 335 (1175)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~-~ 335 (1175)
++++.+.+... -..+++-++|+|+++.-+...+..+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 23333332211 113566778888886666678899999888777888888888765422 11 1
Q ss_pred CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 336 EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 336 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
.-...+.+.++++++....+.+... . .. .+.+..++..++|.|..+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~---~-~~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYN---D-IK----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhc---C-CC----HHHHHHHHHHcCCCHHHHH
Confidence 2236889999999998887765431 1 11 1235678899999887554
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8.9e-06 Score=91.88 Aligned_cols=190 Identities=15% Similarity=0.191 Sum_probs=109.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++.+...+..+ .-...+.++|+.|+||||+|+.+++...... ... ..++..-...+++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~-~~~-------~~pc~~c~~c~~~ 82 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQN-GIT-------SNPCRKCIICKEI 82 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCCCHHHHHH
Confidence 46899999999999988753 2235679999999999999999987532110 000 0000000001111
Q ss_pred HHHhcC-----CCCCccchHHHHHHHHHH-----hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh-h
Q 047556 262 LESITY-----SSCDLKALNEVQVQLKKA-----VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-H 330 (1175)
Q Consensus 262 l~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~ 330 (1175)
...... ........++. +.+.+. ..+++-++|+|++..-....++.+...+.......++|++|.+. .
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred hcCCCCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 110000 00000111111 111111 13456799999997655556777777776655666777666543 3
Q ss_pred hhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 331 VASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
+.... .-...+++.+++.++..+.+...+...+.. ..++.+..|++.++|.|-.+
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 33221 223689999999999998887765432211 12234567899999988543
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.4e-05 Score=93.67 Aligned_cols=196 Identities=18% Similarity=0.190 Sum_probs=114.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..+||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+....+. .++ +..+..-...+.|
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~-~~~-------~~PCG~C~sCr~I 82 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCET-GVT-------SQPCGVCRACREI 82 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcc-CCC-------CCCCcccHHHHHH
Confidence 468999999999999987542 235677999999999999998887532211 000 0011110111111
Q ss_pred HHH-----hcCCCCCccchHHHHHHHHHH----hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-h
Q 047556 262 LES-----ITYSSCDLKALNEVQVQLKKA----VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH-V 331 (1175)
Q Consensus 262 l~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 331 (1175)
... +..+.......++....+... ..++.-++|||+++.-+...|..+...+.......++|+||.+.. +
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 100 000000011122222222111 134566899999977666678888887766666778777777643 3
Q ss_pred hhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch-HHHHHHHH
Q 047556 332 ASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP-LAAKALGG 394 (1175)
Q Consensus 332 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 394 (1175)
...+ .-...+.++.++.++..+.+.+.....+... ..+....|++.++|.. -|+..+-.
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2221 2236899999999999998887664332211 2334567999999855 46655433
No 57
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=3.5e-07 Score=110.76 Aligned_cols=100 Identities=25% Similarity=0.341 Sum_probs=88.0
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEecccccc-cccccccCcccccEEeccCccccccCchhhhccCCCceeeec
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIR-NLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDIT 680 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 680 (1175)
.++.|+|++|.+.+..+..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999998766689999999999999999998 889999999999999999997778999999999999999999
Q ss_pred CccccccCCccCCCC-CCcccc
Q 047556 681 GAYLIKEMPFGMKEL-KNLQAL 701 (1175)
Q Consensus 681 ~~~~~~~~p~~~~~L-~~L~~L 701 (1175)
+|.+.+.+|..++.+ .++..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCcccccCChHHhhccccCceE
Confidence 999888999887653 334444
No 58
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.37 E-value=4.1e-06 Score=83.54 Aligned_cols=180 Identities=22% Similarity=0.234 Sum_probs=92.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
.+|||.+.-++.+.-++......+ ..+.-+.+||++|+||||||.-++++... .|. +.+.+.-... .-+..+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~-~~l~h~lf~GPPG~GKTTLA~IIA~e~~~---~~~---~~sg~~i~k~-~dl~~i 95 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRG-EALDHMLFYGPPGLGKTTLARIIANELGV---NFK---ITSGPAIEKA-GDLAAI 95 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTT-S---EEEEESSTTSSHHHHHHHHHHHCT-----EE---EEECCC--SC-HHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcC-CCcceEEEECCCccchhHHHHHHHhccCC---CeE---eccchhhhhH-HHHHHH
Confidence 579999988887665554322111 45678999999999999999999996543 332 2222110011 111122
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCC--------CC-----------CcEE
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGA--------AP-----------NSKI 322 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~-----------gs~i 322 (1175)
+.. + +++-+|++|.+..-...+-+.+...+.++ ++ =+-|
T Consensus 96 l~~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 96 LTN---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HHT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred HHh---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 221 1 23446667777543322223332222111 11 1234
Q ss_pred EEecCChhhhhhcCCC--CeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHH
Q 047556 323 VVTTRHSHVASTMEPI--QQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGL 395 (1175)
Q Consensus 323 ivTtr~~~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 395 (1175)
=-|||...+...+..- -..+++..+.+|-.++..+.+..-.. +..++.+.+|++++.|-|--..-+-+.
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4588876555443322 23579999999999999877643222 233456789999999999655444333
No 59
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2e-05 Score=87.76 Aligned_cols=207 Identities=14% Similarity=0.135 Sum_probs=129.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAIL 262 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il 262 (1175)
.+.+|+.+++++...|...-.+ ....-+.|+|.+|+|||+.++.|.+..+......+ +++|++-...+...++..|+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 4899999999999988664332 22334899999999999999999987654321222 79999999999999999999
Q ss_pred HHhcCCCCCccchHHHHHHHHHHh--cCccEEEEEecCccCCcccHHHHhcccCCCCC-CcEE--EEecCChhhhhhcC-
Q 047556 263 ESITYSSCDLKALNEVQVQLKKAV--DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAP-NSKI--VVTTRHSHVASTME- 336 (1175)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~i--ivTtr~~~v~~~~~- 336 (1175)
.+++..........+....+.+.+ .++.+++|||+++.-....-+.+...+..... +++| |..+-+-.+...+.
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 999855444455566666676666 45889999999954211111233333332222 3443 33344333332221
Q ss_pred ------CCCeeeCCCCChhhhHHHHHhhhccCC--CCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 337 ------PIQQYNLRCLSDEDCWSLFMMHAFVSR--DLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 337 ------~~~~~~l~~L~~~e~~~lf~~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
....+...|-+.+|-.+.+..++-.+- ....+...+-+|...++..|--=.||..+
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 223477889999999998887764221 11233334444444444444444454443
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.36 E-value=6.7e-06 Score=93.19 Aligned_cols=198 Identities=13% Similarity=0.092 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccc-eEEEEEeCCCCCH-HHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFD-IKAWVCVSEDFDV-LSISR 259 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~-~~~~~ 259 (1175)
..++|++..++.+..++... ..+.+.++|++|+||||+|+.+++..... .+. ..+.++++...+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGD--PWENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCc--ccccceEEechhhhhhcchhhhh
Confidence 46899999999999988653 33467899999999999999998754321 111 2344444321100 00000
Q ss_pred ---HHHHHhcCC-CCCccchHHHHHHHHHH---h--cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 260 ---AILESITYS-SCDLKALNEVQVQLKKA---V--DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 260 ---~il~~l~~~-~~~~~~~~~~~~~l~~~---l--~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
......+.. .......+.....++.. . .+.+-+||+||+..-.......+...+......+++|+||....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 000000000 00000111111112111 1 23455899999965433344455555544445577877775432
Q ss_pred -hhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 331 -VASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 331 -v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
+...+ .....+.+.+++.++..+++...+...+.. ...+....+++.++|.+-.+..
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 22211 123578889999999988888765433221 1234567788899887655443
No 61
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.34 E-value=8.3e-07 Score=90.79 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=34.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccc
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEV 235 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 235 (1175)
.||||+++++++...+..... ...+.+.|+|.+|+|||+|.++++.....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~---~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQS---GSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS--------EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 489999999999999962221 45689999999999999999999886554
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=9.2e-06 Score=94.27 Aligned_cols=191 Identities=15% Similarity=0.142 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..+||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++..... -|+.. ..+..-..-+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~-------~~~~~-~pCg~C~sC~~I 81 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCE-------TGVTS-TPCEVCATCKAV 81 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCC-------cCCCC-CCCccCHHHHHH
Confidence 468999999999999997542 23678999999999999999998743211 11110 001100111111
Q ss_pred HHHhcC-----CCCCccchHHHHHHHHH----HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-h
Q 047556 262 LESITY-----SSCDLKALNEVQVQLKK----AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH-V 331 (1175)
Q Consensus 262 l~~l~~-----~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 331 (1175)
...-.. ........++....+.. -..+++-++|+|++..-+......+...+.....+.++|++|.+.. +
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 110000 00001112222211111 1235677999999976555677777777766556677777776532 2
Q ss_pred hhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 332 AST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
... ......+++++++.++..+.+.+.+...+.... .+....|++.++|.+-.+
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 211 123368999999999998888776643332122 234567889999977443
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.9e-06 Score=100.07 Aligned_cols=197 Identities=15% Similarity=0.120 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
.+++|-+..++.|..++... .-...+.++|++|+||||+|+.+++.....+ .+...+|+|.+... +......-
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~-~~~~~cg~C~sc~~-i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSG-EDPKPCGECESCLA-VRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccC-CCCCCCCcChhhHH-HhcCCCCc
Confidence 46899999888888888764 2235679999999999999999987643222 12223333321100 00000000
Q ss_pred HHHhcCC-CCCccchHHHHHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecC-Chhhhhhc-CC
Q 047556 262 LESITYS-SCDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTR-HSHVASTM-EP 337 (1175)
Q Consensus 262 l~~l~~~-~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~~ 337 (1175)
+..+... ........++...+.. -+.+++-++|+|+++......+..+...+........+|++|. ...+...+ ..
T Consensus 87 v~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 87 VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000000 0001111111111111 1235677999999976666677888777766545555555554 33333222 23
Q ss_pred CCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 338 IQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 338 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
...+++.+++.++..+.+.+.+...+... ..+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 46899999999999999988764333211 2334677999999988544
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=3.3e-06 Score=82.79 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=72.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 047556 185 FGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILES 264 (1175)
Q Consensus 185 vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~ 264 (1175)
+|++..+.++...+... ..+.+.|+|++|+|||++|+++++.... .-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhh
Confidence 47888899998888653 2367899999999999999999986431 12345666655443322221111100
Q ss_pred hcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCc---ccHHHHhcccCCC---CCCcEEEEecCChh
Q 047556 265 ITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDY---GLWEDLKAPLMGA---APNSKIVVTTRHSH 330 (1175)
Q Consensus 265 l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~~~l~~~l~~~---~~gs~iivTtr~~~ 330 (1175)
............++.++|+||++.-.. ..+..+...+... ..+..||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111222345788999999974311 2222222222221 35778888888654
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.32 E-value=8.8e-09 Score=108.98 Aligned_cols=280 Identities=18% Similarity=0.231 Sum_probs=161.7
Q ss_pred CCccEEEEeCCCCCCCC--CCCcCCCCCccEEeeccCcCcceeccc----cccccceEEEccCCcccccccc---CCCCC
Q 047556 809 SKMEVLILENCENCTYL--PSTVLWSSSLKMLEIHNCKNLQHLVDE----NNLQLESLRITSCDSLTFIARR---KLPSS 879 (1175)
Q Consensus 809 ~~L~~L~L~~~~~~~~l--p~~~~~~~~L~~L~L~~~~~l~~l~~~----~~~~L~~L~l~~c~~l~~~~~~---~~~~~ 879 (1175)
.-|+.|.+.+|.-.+.- -.....+|++++|.+.+|.++..-... ....|+.|.+..|++++..... .-.++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35788999998765443 234456799999999999977654332 2345889999999998876533 23378
Q ss_pred ccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCc--CCCCCCCcCccceEEeecCCCCCccC-----CCCCC
Q 047556 880 LKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTS--LSPGIRLPEALEQLYIWDCQKLESIP-----DGLHN 952 (1175)
Q Consensus 880 L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~~p-----~~~~~ 952 (1175)
|+++.++.|+.+.. -+......++..++.+...+|..... +-........+.++++..|..++... .....
T Consensus 218 L~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhc--CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 89999999987665 11112223455677777777765431 11111234457777777886665432 33567
Q ss_pred CCEEeeCCCCCccccccC---CCCCCccEEEEccCcccccCcc--ccCCCCcccEEEeeCCCCCCCCCCCCCCCCcceEE
Q 047556 953 VQRIDIQRCPSLVSLAER---GLPITISSVRIWSCEKLEALPN--DLHKLNSLEHLYLQRCPSIVRFPEEGFPNNLVELK 1027 (1175)
Q Consensus 953 L~~L~l~~~~~L~~l~~~---~~~~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~ 1027 (1175)
|+.|+.++|..+...+.. ....+|+.|.+..|..++..-- .-.+++.|+.+++.+|..+..-
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~------------- 362 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG------------- 362 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-------------
Confidence 788888888776654432 2224555555555544332210 0124444555555444222111
Q ss_pred EeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhh-----ccCCCcccceeecCCcCCcccCcCCCCCCC
Q 047556 1028 IRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMR-----MMLPTSLCFLNIIGFRNLKKLSSKGFQSLT 1102 (1175)
Q Consensus 1028 l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~-----~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~ 1102 (1175)
.+-..-.+++.|+.|.+++|.. +.+++.. ......|..+.+++|+.+++-..+.+..++
T Consensus 363 -----------tL~sls~~C~~lr~lslshce~-----itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 363 -----------TLASLSRNCPRLRVLSLSHCEL-----ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred -----------hHhhhccCCchhccCChhhhhh-----hhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 0111113466777777776542 2222110 012345666777777777665445566777
Q ss_pred CCCceeccCCCCCCcCC
Q 047556 1103 SLEFLWIDDCPNLKSFP 1119 (1175)
Q Consensus 1103 ~L~~L~l~~c~~l~~lp 1119 (1175)
+|+.+++-+|..+..-+
T Consensus 427 ~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 427 NLERIELIDCQDVTKEA 443 (483)
T ss_pred ccceeeeechhhhhhhh
Confidence 88888888877665543
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.3e-05 Score=96.01 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccc------------------ccceE
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETF------------------KFDIK 243 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~ 243 (1175)
..+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++....... .|..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999999887532 2345689999999999999999975422110 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEE
Q 047556 244 AWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKI 322 (1175)
Q Consensus 244 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (1175)
+++.......+ ..+.++...+.. ...+++-++|||++..-....+..+...+.......++
T Consensus 91 iEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22211110111 111122211111 12467789999999776667788888777665556666
Q ss_pred EEecCC-hhhhhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHH
Q 047556 323 VVTTRH-SHVAST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKAL 392 (1175)
Q Consensus 323 ivTtr~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 392 (1175)
|++|.+ ..+... ......|.+.+++.++..+++.+.+...+. ....+....|++.++|.|- |+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665544 334322 122368999999999999988876533221 1123345779999999885 44443
No 67
>PF13173 AAA_14: AAA domain
Probab=98.30 E-value=2e-06 Score=81.19 Aligned_cols=118 Identities=22% Similarity=0.278 Sum_probs=78.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
+++.|.|+-|+||||++++++++.. ....++++++.......... .+ ....+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 6899999999999999999997633 12456777765442211000 00 222333333347
Q ss_pred cEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhhhhc------CCCCeeeCCCCChhh
Q 047556 290 KIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTM------EPIQQYNLRCLSDED 350 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~------~~~~~~~l~~L~~~e 350 (1175)
+.++++|++.. ...|......+.+..+..+|++|+........- +....+++.||+-.|
T Consensus 62 ~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 78899999954 457877777777666678999999987665321 122467888988776
No 68
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.29 E-value=8e-06 Score=85.08 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=99.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
..+..+.+||++|+||||||+.+....+... ..||..|....-..-.+.|.++... ...+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S-----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS-----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc-----eEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 5677899999999999999999998644322 4577777655444555555554221 1234
Q ss_pred cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE--ecCChhhhh---hcCCCCeeeCCCCChhhhHHHHHhhhc-
Q 047556 287 DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV--TTRHSHVAS---TMEPIQQYNLRCLSDEDCWSLFMMHAF- 360 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~---~~~~~~~~~l~~L~~~e~~~lf~~~~~- 360 (1175)
.++|.+|++|.|..-...+-+ ..+|.-..|.-++| ||.++...- .+....++.++.|+.++-..++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 678999999999542221111 23556667877776 777776432 223447899999999999888877321
Q ss_pred --cCCC---CCcc---hhHHHHHHHHHHhcCCch
Q 047556 361 --VSRD---LTAQ---QISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 361 --~~~~---~~~~---~~~~~~~~~i~~~c~glP 386 (1175)
.... .-+. .....+.+-++..|+|-.
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1111 1122 133455666777788855
No 69
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.27 E-value=2.2e-07 Score=93.67 Aligned_cols=112 Identities=25% Similarity=0.252 Sum_probs=85.1
Q ss_pred hHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhcc
Q 047556 592 VFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKL 671 (1175)
Q Consensus 592 ~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 671 (1175)
.+..+..-.+.+|+|++|+|.|..+. .+..+.+|+.||||+|.+.++-..-.+|-|.++|.|++| .+..+ +++++|
T Consensus 298 ~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KL 373 (490)
T KOG1259|consen 298 QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKL 373 (490)
T ss_pred hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhh
Confidence 34556667788888888888888775 478888888888888888877776777888888888888 66666 358888
Q ss_pred CCCceeeecCccccccCC--ccCCCCCCccccCceeecc
Q 047556 672 INLRHLDITGAYLIKEMP--FGMKELKNLQALSNFIVGT 708 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p--~~~~~L~~L~~L~~~~~~~ 708 (1175)
.+|..||+++|+ +..+. .+|++|+.|+++.+..+..
T Consensus 374 YSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 374 YSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence 888888888887 44432 4688888888887666543
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.26 E-value=1e-05 Score=89.95 Aligned_cols=181 Identities=12% Similarity=0.133 Sum_probs=103.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccc-eEEEEEeCCCCCHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFD-IKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 260 (1175)
..++|.+..++.+..++... ..+-+.++|++|+||||+|+.+++..... .|. .++-++.+...... .+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~eln~sd~~~~~-~vr~ 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGP--NYKEAVLELNASDDRGID-VVRN 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcc--cCccceeeecccccccHH-HHHH
Confidence 46889888888888776542 33457799999999999999998753221 121 11112222211111 2222
Q ss_pred HHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh-hhhhhc-CCC
Q 047556 261 ILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-HVASTM-EPI 338 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~ 338 (1175)
++..+...... .-.++.-++|+|+++.-.......+...+......+++|+++... .+.... ...
T Consensus 84 ~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 84 KIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 22211110000 002456799999997655445555555554444567777766543 221111 122
Q ss_pred CeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHH
Q 047556 339 QQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLA 388 (1175)
Q Consensus 339 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1175)
..+++.++++++....+...+...+..-. .+....|++.++|-.-.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 57899999999998888877643332122 23456788999886643
No 71
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.26 E-value=1.6e-05 Score=95.50 Aligned_cols=203 Identities=16% Similarity=0.133 Sum_probs=119.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccccc---ceEEEEEeCCC---CCHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKF---DIKAWVCVSED---FDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~---~~~~ 255 (1175)
+.++|++..+..+...+... ....+.|+|++|+||||+|+.+++...... .+ ...-|+.+... .+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~-~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLK-HTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhcc-CCcccCCCCeEEEechhccCCHH
Confidence 35889999999988877532 335799999999999999999987643221 11 12335544321 1222
Q ss_pred HHHHH---------------HHHHhcCCC----------------CCccc-hHHHHHHHHHHhcCccEEEEEecCccCCc
Q 047556 256 SISRA---------------ILESITYSS----------------CDLKA-LNEVQVQLKKAVDGKKIFLVLDDVWNEDY 303 (1175)
Q Consensus 256 ~~~~~---------------il~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~~r~LlVlDdv~~~~~ 303 (1175)
.+... .+...+... ++... ....+..+.+.+.++++.++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 22111 111111110 01111 12356778888889999999888887777
Q ss_pred ccHHHHhcccCCCCCCcEEEE--ecCChhh-hhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHH
Q 047556 304 GLWEDLKAPLMGAAPNSKIVV--TTRHSHV-ASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVV 379 (1175)
Q Consensus 304 ~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~ 379 (1175)
..|+.+...+....+...|+| ||++... ...+ .....+.+.+++.+|.++++.+.+..... .. ..++.+.|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHH
Confidence 778888776666655555655 5664432 1111 12246788999999999999887643211 11 123344555
Q ss_pred HhcCCchHHHHHHHHH
Q 047556 380 GKCRGLPLAAKALGGL 395 (1175)
Q Consensus 380 ~~c~glPlai~~~~~~ 395 (1175)
+.+..-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 5554445555554433
No 72
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.25 E-value=6.3e-08 Score=106.44 Aligned_cols=127 Identities=21% Similarity=0.303 Sum_probs=70.0
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCC
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLIN 673 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 673 (1175)
+..+.++..|.+|||+.|+++.+| ..++.| -|+.|-+++|+++.+|+.|+.+..|..||.+.| .+..+|..++.+.+
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~lp-~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~s 190 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSHLP-DGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTS 190 (722)
T ss_pred chhhhhhhHHHHhhhccchhhcCC-hhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHH
Confidence 344555566666666666666655 344444 356666666666666666665556666666665 55555555666665
Q ss_pred CceeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccc
Q 047556 674 LRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLS 725 (1175)
Q Consensus 674 L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~ 725 (1175)
|+.|.+..|. ...+|..+..| .|..|++..+....+|..+.+++.|+.|.
T Consensus 191 lr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 191 LRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred HHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeee
Confidence 5555555555 44455554422 34445555555555554555555555443
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.24 E-value=9.5e-07 Score=102.46 Aligned_cols=192 Identities=23% Similarity=0.250 Sum_probs=141.4
Q ss_pred cEEEecccccccCCCCccCCcccccEEEecccccccccccccCcc-cccEEeccCccccccCchhhhccCCCceeeecCc
Q 047556 604 RVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLI-NLQILLLRGCYYLLKLPSKMRKLINLRHLDITGA 682 (1175)
Q Consensus 604 r~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 682 (1175)
..|+++.+.+.... ..+..+..+..|++.++.+..+|.....+. +|+.|++++| .+..+|..++.+++|+.|++++|
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence 46888888874444 456777899999999999999999999995 9999999999 88999888999999999999999
Q ss_pred cccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccccccc
Q 047556 683 YLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGS 762 (1175)
Q Consensus 683 ~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 762 (1175)
. +..+|...+.+++|+.|.+..+.....+..+..+..|+.+. +..+.
T Consensus 174 ~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~--------------------------------~~~N~ 220 (394)
T COG4886 174 D-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELD--------------------------------LSNNS 220 (394)
T ss_pred h-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhh--------------------------------hcCCc
Confidence 9 77888777788999999888876666553332333344332 22211
Q ss_pred ccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeecc
Q 047556 763 QFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHN 842 (1175)
Q Consensus 763 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~ 842 (1175)
. ...+..+....++..+.+.++....++..+.. +++++.|++++|.+....+ +....+++.|++++
T Consensus 221 ~----------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 221 I----------IELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred c----------eecchhhhhcccccccccCCceeeeccchhcc--ccccceecccccccccccc--ccccCccCEEeccC
Confidence 0 01122234456666777777777776777775 7889999999998865433 44448889998887
Q ss_pred Cc
Q 047556 843 CK 844 (1175)
Q Consensus 843 ~~ 844 (1175)
..
T Consensus 287 n~ 288 (394)
T COG4886 287 NS 288 (394)
T ss_pred cc
Confidence 43
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.1e-05 Score=90.98 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccce-EEEEEeCCCCCHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDI-KAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~ 260 (1175)
.+++|-+..++.+...+.... -...+.++|+.|+||||+|+.+++...... .... ..+..+.. -.....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~-~~~~~~~~~~C~~----C~~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTIKTCEQ----CTNCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCcc-ccccCcCcCCCCC----ChHHHH
Confidence 468999999998888776542 235789999999999999999987542211 0000 00000000 000111
Q ss_pred HHHHhcC-----CCCCccchHHHHHHHHH----HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE-ecCChh
Q 047556 261 ILESITY-----SSCDLKALNEVQVQLKK----AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV-TTRHSH 330 (1175)
Q Consensus 261 il~~l~~-----~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~ 330 (1175)
+...... ........+++...+.. -+.+++-++|+|+++.-....|..+...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 1110000 00001112222222211 1346778999999987666778888877776555666554 555555
Q ss_pred hhhhcC-CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHH
Q 047556 331 VASTME-PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLA 388 (1175)
Q Consensus 331 v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1175)
+...+. ....+++.+++.++....+...+...+.... .+....|++.++|.+--
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARD 225 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 543322 3367999999999999999887754332112 23456688999997743
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.6e-05 Score=90.36 Aligned_cols=197 Identities=16% Similarity=0.131 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
.++||-+..++.|.+.+.... -...+.++|..|+||||+|+.+.+...... . +..--+ .+..+..-...+.|
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~-p-~~~~g~-~~~PCG~C~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTG-A-DGEGGI-TAQPCGQCRACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCC-c-cccccC-CCCCCcccHHHHHH
Confidence 468999999999999997642 235678999999999999999887432210 0 000000 00000000111111
Q ss_pred HHH-----hcCCCCCccchHHHHHHHHHH----hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE-EecCChhh
Q 047556 262 LES-----ITYSSCDLKALNEVQVQLKKA----VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV-VTTRHSHV 331 (1175)
Q Consensus 262 l~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v 331 (1175)
... +..+.......++....+... ..++.-++|+|+++.-+...+..+...+.....++++| +||....+
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 100 000000011122222222211 24567799999997766677888887776554556655 55554444
Q ss_pred hhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 332 ASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 332 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
...+ .-...+.+..++.++..+.+.+.+...+... ..+..+.|++.++|.|.-..
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 4322 1236889999999999988877653222111 12344678999999886443
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.6e-05 Score=88.86 Aligned_cols=200 Identities=21% Similarity=0.176 Sum_probs=112.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccc------------------ccceE
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETF------------------KFDIK 243 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~ 243 (1175)
..+||.+...+.+...+..+ .-...+.++|++|+||||+|+.+++....... .+..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46899988888888877653 22356889999999999999999875321110 00011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEE
Q 047556 244 AWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKI 322 (1175)
Q Consensus 244 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (1175)
+.+..+.......+ +++.+ .+.. -..+++-++|+|+++.-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~-----------------~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRD-----------------AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHH-----------------HHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222111111111 11111 1110 12356779999999654444556666666544344444
Q ss_pred EEecCC-hhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC-chHHHHHHHHHhcC-
Q 047556 323 VVTTRH-SHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG-LPLAAKALGGLLRS- 398 (1175)
Q Consensus 323 ivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~~l~~- 398 (1175)
|++|.+ ..+...+ .....+.+.+++.++....+...+...+..- ..+....|++.++| .+.|+..+-.+...
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 444433 3333322 2336889999999998888887764322211 23345678887765 56777776554321
Q ss_pred --C-CHHHHHHHH
Q 047556 399 --K-RHDAWDEIL 408 (1175)
Q Consensus 399 --~-~~~~w~~~~ 408 (1175)
. +.+....++
T Consensus 227 ~~~It~e~V~~~l 239 (472)
T PRK14962 227 EGKITLETVHEAL 239 (472)
T ss_pred CCCCCHHHHHHHH
Confidence 2 455555544
No 77
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.9e-05 Score=90.42 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc------------------cccceE
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET------------------FKFDIK 243 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~ 243 (1175)
..++|-+..++.+...+... .-...+.++|+.|+||||+|+.+++...... ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999988753 2235678999999999999999987432100 011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEE
Q 047556 244 AWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKI 322 (1175)
Q Consensus 244 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (1175)
+++.......+. +..++...+.. -..+++-++|+|++..-....++.+...+......+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 222221111111 11122222211 12467779999999766666778888777765556665
Q ss_pred E-EecCChhhhhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch-HHHHHHHH
Q 047556 323 V-VTTRHSHVAST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP-LAAKALGG 394 (1175)
Q Consensus 323 i-vTtr~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 394 (1175)
| +||....+... ......+++.+++.++....+.+.+...+. . ........|++.++|.+ -|+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~---~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-N---SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5 45544444322 123478999999999988777765433221 1 12234467889999966 45555433
No 78
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.3e-06 Score=69.82 Aligned_cols=58 Identities=33% Similarity=0.450 Sum_probs=51.4
Q ss_pred ccccEEEecccccccccc-cccCcccccEEeccCccccccCc-hhhhccCCCceeeecCcc
Q 047556 625 KHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHLDITGAY 683 (1175)
Q Consensus 625 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 683 (1175)
++|++|++++|.++.+|. .|.++++|++|++++| .+..+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 6889999999999998 666665 568999999999999986
No 79
>PRK08727 hypothetical protein; Validated
Probab=98.20 E-value=3.1e-05 Score=81.51 Aligned_cols=148 Identities=16% Similarity=0.086 Sum_probs=88.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.|+|..|+|||+|++++++..... ...+.|+++.. ....+. . .+ +.+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~~~~------~~~~~~--------------~---~~-~~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLPLQA------AAGRLR--------------D---AL-EAL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEeHHH------hhhhHH--------------H---HH-HHH-hc
Confidence 469999999999999999998764332 22455665322 111110 0 11 111 23
Q ss_pred cEEEEEecCccCC-cccHHH-HhcccCC-CCCCcEEEEecCCh---------hhhhhcCCCCeeeCCCCChhhhHHHHHh
Q 047556 290 KIFLVLDDVWNED-YGLWED-LKAPLMG-AAPNSKIVVTTRHS---------HVASTMEPIQQYNLRCLSDEDCWSLFMM 357 (1175)
Q Consensus 290 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~ 357 (1175)
.-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999995321 123432 2222211 12466799999853 2223333456899999999999999998
Q ss_pred hhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 358 HAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
.+...+- ...++...-|++.++|-.-++
T Consensus 174 ~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 7654322 122345567888888765544
No 80
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.20 E-value=3.7e-05 Score=86.40 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=104.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEe--CCCCCHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCV--SEDFDVLSISR 259 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~ 259 (1175)
.+++|++..++.+..++... ..+.+.++|.+|+||||+|+.+++...... +. ..++.+ +...... ..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~--~~-~~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGED--WR-ENFLELNASDERGID-VIR 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCc--cc-cceEEeccccccchH-HHH
Confidence 46899999999999988653 234579999999999999999987642221 11 112222 2211111 111
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh-hhhhhc-CC
Q 047556 260 AILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-HVASTM-EP 337 (1175)
Q Consensus 260 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~ 337 (1175)
+.+..+....+ .....+-++++|++..-.......+...+......+.+|+++... .+.... ..
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 11111110000 001345689999986544444556665555444556777766432 221111 12
Q ss_pred CCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 338 IQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 338 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
...+++.+++.++....+...+...+..- ..+....+++.++|.+--+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 34688999999999888887764332211 2334667889999987653
No 81
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=3.6e-06 Score=88.13 Aligned_cols=89 Identities=21% Similarity=0.210 Sum_probs=61.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCccch------HHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED--FDVLSISRAILESITYSSCDLKAL------NEVQV 280 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~------~~~~~ 280 (1175)
...++|+|++|+|||||+++++++.... +|+.++|+.+... .++.++++.+...+-....+.... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~--~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN--HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc--cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999976543 7999999997766 789999999833332221111111 11122
Q ss_pred HHHHH-hcCccEEEEEecCc
Q 047556 281 QLKKA-VDGKKIFLVLDDVW 299 (1175)
Q Consensus 281 ~l~~~-l~~~r~LlVlDdv~ 299 (1175)
..... -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999994
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.2e-05 Score=90.83 Aligned_cols=191 Identities=14% Similarity=0.137 Sum_probs=107.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+..-... .. -+..+. .-...+.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~-~~---~~~pCg----~C~sCr~i 82 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCEN-AQ---HGEPCG----VCQSCTQI 82 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccC-CC---CCCCCc----ccHHHHHH
Confidence 479999999999999987642 235789999999999999999887432111 00 000000 00000000
Q ss_pred HHH-----hcCCCCCccchHHHHHHHHH----HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh-hh
Q 047556 262 LES-----ITYSSCDLKALNEVQVQLKK----AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-HV 331 (1175)
Q Consensus 262 l~~-----l~~~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v 331 (1175)
... +..........+.+...+.. -..+++-++|+|++..-+......+...+......+++|++|.+. .+
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 000 00000001112222211111 123567799999996655445666776665544566666666543 22
Q ss_pred hhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 332 AST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
... .+-...+.+.+++.++....+.+.+...+... ..+....|++.++|.+--+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHH
Confidence 221 12225678889999999888887664332211 2334577999999988543
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.6e-05 Score=89.87 Aligned_cols=189 Identities=15% Similarity=0.102 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++...... ... ...+..... -..+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-~~~---~~pCg~C~s----C~~i 84 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCEN-PIG---NEPCNECTS----CLEI 84 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCccc-ccC---ccccCCCcH----HHHH
Confidence 468999999999998887642 224689999999999999999987532211 000 000111111 1111
Q ss_pred HHHhcCCC--------CCccchHHHHHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE-ecCChhh
Q 047556 262 LESITYSS--------CDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV-TTRHSHV 331 (1175)
Q Consensus 262 l~~l~~~~--------~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 331 (1175)
........ ....+..++...+.. ...++.-++|+|+++.-..+.+..+...+........+|. ||....+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 11111100 001112222222221 1245677999999987666778888777765444555554 4444444
Q ss_pred hhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH
Q 047556 332 ASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL 387 (1175)
Q Consensus 332 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1175)
.... .-...|.+.+++.++..+.+.+.+...+.. ...+....|++.++|.+-
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~----~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ----YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCChHH
Confidence 3322 223679999999999988888766433221 123345779999999884
No 84
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=4e-05 Score=85.01 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=115.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc-cccceEEEEEeCCCCCHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET-FKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
...++|-+...+.+...+..+. ....+.|+|+.|+||||+|..+++..-... ..+... .....+......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 4578999999999999997642 335789999999999999998887532210 001111 0011111111223
Q ss_pred HHHHHhc-------CCCC-------CccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCCCCCc
Q 047556 260 AILESIT-------YSSC-------DLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNS 320 (1175)
Q Consensus 260 ~il~~l~-------~~~~-------~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (1175)
.+...-. .+.+ ..-..++. +.+.+.+ .+++-++|+|+++.-+......+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 3322211 1100 01112332 2344443 3567799999997766666777777776544445
Q ss_pred E-EEEecCChhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 321 K-IVVTTRHSHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 321 ~-iivTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
. |++|++...+.... .-...+.+.+++.++..+++.+.+.. . . ...+....|++.++|.|.....+
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5 44554443333221 12368999999999999999874321 1 1 11234567999999999865543
No 85
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.5e-05 Score=91.12 Aligned_cols=192 Identities=15% Similarity=0.128 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..+||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++..-... . +. ...+..-...+.|
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~------~~-~~pCg~C~~C~~i 82 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCET-G------IT-ATPCGECDNCREI 82 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhcc-C------CC-CCCCCCCHHHHHH
Confidence 468999999999999887642 224578999999999999999987532210 0 00 0011111111111
Q ss_pred HHHhc-----CCCCCccchHHH---HHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC-hhh
Q 047556 262 LESIT-----YSSCDLKALNEV---QVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-SHV 331 (1175)
Q Consensus 262 l~~l~-----~~~~~~~~~~~~---~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 331 (1175)
...-. .........++. ...+.. -..+++-++|+|+++.-.......+...+.......++|.+|.+ ..+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 11000 000000112222 222111 12467789999999776667788887777665556665555544 444
Q ss_pred hhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 332 AST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
... ..-...|.+.+++.++..+.+.+.....+... .......|++.++|.+--+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~----e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF----EPRALQLLARAADGSMRDAL 218 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 322 12246899999999999988887653222111 12344679999999876433
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.13 E-value=7.5e-05 Score=85.23 Aligned_cols=184 Identities=17% Similarity=0.191 Sum_probs=109.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc-------------------cccce
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET-------------------FKFDI 242 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~ 242 (1175)
..++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+.+...... .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 46899999999999988753 2335788999999999999988876532110 01111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEE
Q 047556 243 KAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKI 322 (1175)
Q Consensus 243 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (1175)
+++..+...... ..+++...+.. .-..+++-++|+|++..-.......+...+......+.+
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKY----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhc----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 222211111111 11122221110 012345668999998554445566676666554456666
Q ss_pred EEecCChh-hhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 323 VVTTRHSH-VASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 323 ivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
|++|.+.. +...+ .....+++.++++++..+.+...+...+.. . ..+.+..+++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i---~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-I---EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCChHHHHHH
Confidence 66665443 22221 223578889999999888888766432221 1 1345677899999988765544
No 87
>PRK09087 hypothetical protein; Validated
Probab=98.13 E-value=2.9e-05 Score=80.79 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=86.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
+.+.|+|+.|+|||+|++.++..... .+++.. .+..+++.. +.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDA--------LLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCC--------EEecHH------HcchHHHHh---------------------hhc-
Confidence 67899999999999999998874321 133221 111111111 111
Q ss_pred cEEEEEecCccC--CcccHHHHhcccCCCCCCcEEEEecCC---------hhhhhhcCCCCeeeCCCCChhhhHHHHHhh
Q 047556 290 KIFLVLDDVWNE--DYGLWEDLKAPLMGAAPNSKIVVTTRH---------SHVASTMEPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 290 r~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
-+|++||+... +..++-.+...+. ..|..||+|++. +++...+.....++++++++++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999532 2222222332222 236779998873 334445566789999999999999999988
Q ss_pred hccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 359 AFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
+....- ...+++..-|++++.|..-++..+
T Consensus 166 ~~~~~~----~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 166 FADRQL----YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHcCC----CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 754322 122445667888888877766643
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=8.6e-05 Score=82.93 Aligned_cols=195 Identities=18% Similarity=0.135 Sum_probs=113.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccc-ccce-E---EEEEeCCCCCHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETF-KFDI-K---AWVCVSEDFDVL 255 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~-~---~wv~~s~~~~~~ 255 (1175)
...++|.+..++.+.+.+..+. -...+.++|+.|+||+|+|..+.+..-.... ..+. . .=..+...+
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c--- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH--- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---
Confidence 3578999999999999987642 2357899999999999999887764321110 0000 0 000000000
Q ss_pred HHHHHHHHHhcCC-------C-C------CccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCC
Q 047556 256 SISRAILESITYS-------S-C------DLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGA 316 (1175)
Q Consensus 256 ~~~~~il~~l~~~-------~-~------~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (1175)
...+.+...-..+ . . ..-.+++ ++.+.+.+ .+.+.++|+|+++.-+......+...+...
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 1111111110000 0 0 0011233 22333333 356779999999877777777787777665
Q ss_pred CCCcEEEEecCChh-hhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 317 APNSKIVVTTRHSH-VASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 317 ~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
..++.+|++|.... +.... .....+.+.+++.++..+.+...... ... . ....+++.++|.|.....+
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~--~-~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD--D-PRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH--H-HHHHHHHHcCCCHHHHHHH
Confidence 55666777666553 32221 23468999999999999999875411 111 1 1256899999999865443
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5e-05 Score=87.09 Aligned_cols=181 Identities=17% Similarity=0.167 Sum_probs=110.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc------------------cccceE
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET------------------FKFDIK 243 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~ 243 (1175)
.++||.+..++.+...+..+. -...+.++|+.|+||||+|+.+++..-... ..+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999998888888886532 235789999999999999998876321000 011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE
Q 047556 244 AWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV 323 (1175)
Q Consensus 244 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1175)
+.++.+....+.+ .+++++..... -+.+++-++|+|++..-+....+.+...+....+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222221 12222221100 123566789999997655566777877777665667666
Q ss_pred Eec-CChhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHH
Q 047556 324 VTT-RHSHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLA 388 (1175)
Q Consensus 324 vTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1175)
++| ....+...+ .....+.+.+++.++..+.+.+.+...+... ..+....|++.++|.+-.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 555 434443322 2346789999999999888887765433211 223456789999987753
No 90
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.11 E-value=7.2e-05 Score=78.84 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=90.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
+.+.|+|+.|+|||+|++++++.... .-..+.++++..... ...+. .+.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~--------------------~~~~~----~~~~~~- 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW--------------------FVPEV----LEGMEQ- 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh--------------------hhHHH----HHHhhh-
Confidence 57899999999999999999885432 123455665532100 00111 111111
Q ss_pred cEEEEEecCccCC-cccHHHHh-cccCCC-CCC-cEEEEecCCh---------hhhhhcCCCCeeeCCCCChhhhHHHHH
Q 047556 290 KIFLVLDDVWNED-YGLWEDLK-APLMGA-APN-SKIVVTTRHS---------HVASTMEPIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 290 r~LlVlDdv~~~~-~~~~~~l~-~~l~~~-~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 356 (1175)
--+|++||+.... ...|+... ..+... ..| .++|+||+.. ++...+....+++++++++++-.+.+.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2478999995422 13454322 222111 123 4799999754 333445566899999999999999987
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHH
Q 047556 357 MHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALG 393 (1175)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1175)
+.+...+- ...+++..-|++++.|..-++..+-
T Consensus 178 ~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 178 LRARLRGF----ELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 76643221 2234456778888888766555443
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=6.3e-05 Score=87.58 Aligned_cols=195 Identities=16% Similarity=0.164 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|++..++.+..++..+. -.+.+.++|+.|+||||+|+.+++..... -|.... .+..-...+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-------~~~~~~-~Cg~C~sCr~i 82 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCL-------NPKDGD-CCNSCSVCESI 82 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCC-------CCCCCC-CCcccHHHHHH
Confidence 468999999999999886542 23678899999999999999998743211 121110 11111111111
Q ss_pred HHHhcCC-----CCCccchHHH---HHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEec-CChhh
Q 047556 262 LESITYS-----SCDLKALNEV---QVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTT-RHSHV 331 (1175)
Q Consensus 262 l~~l~~~-----~~~~~~~~~~---~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 331 (1175)
....... .......++. ...+.. -..+++-++|+|+++.-....+..+...+........+|++| ....+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 1110000 0000112221 111111 112345579999997655567777777776544455555544 43333
Q ss_pred hhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHHH
Q 047556 332 AST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKALG 393 (1175)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 393 (1175)
... ......+++.+++.++....+...+...+... ..+.+..+++.++|.+- |+..+-
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 322 12346889999999999888887654322111 12345678899999654 444443
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=4.1e-05 Score=80.80 Aligned_cols=152 Identities=18% Similarity=0.105 Sum_probs=87.2
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
.+.+.|+|..|+|||+||+++++.....+ ...++++..... .. + ... .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~------~~----~------------------~~~-~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPL------LA----F------------------DFD-P 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhH------HH----H------------------hhc-c
Confidence 36789999999999999999998642221 133445433211 00 0 011 2
Q ss_pred ccEEEEEecCccCCcccHHHHhcccCCC-CCCc-EEEEecCChhhhh--------hcCCCCeeeCCCCChhhhHHHHHhh
Q 047556 289 KKIFLVLDDVWNEDYGLWEDLKAPLMGA-APNS-KIVVTTRHSHVAS--------TMEPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
..-+||+||+..-+...-+.+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3347899999543322223343333221 2333 4677776543221 2223468899999998876666654
Q ss_pred hccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 047556 359 AFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLL 396 (1175)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 396 (1175)
+...+ .. ..++..+.+++.+.|.+..+..+...+
T Consensus 170 ~~~~~-v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG-LQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC-CC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32211 11 223456778889999999887765554
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=6.3e-05 Score=87.90 Aligned_cols=182 Identities=17% Similarity=0.146 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc------------------cccceE
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET------------------FKFDIK 243 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~ 243 (1175)
.++||-+..++.+..++.... -...+.++|+.|+||||+|+.+++..-... ..|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999997642 235678999999999999999887432111 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE
Q 047556 244 AWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV 323 (1175)
Q Consensus 244 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1175)
+.+..+....+.+ .+++++.+... -..++.-++|+|+|+.-.......+...+......+++|
T Consensus 91 ~eidaas~~~v~~-iR~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVED-TRELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHH-HHHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 2222222112211 12222221110 113566789999997766667777777776655667666
Q ss_pred EecCC-hhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 324 VTTRH-SHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 324 vTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
++|.+ ..+.... .....+++++++.++....+...+...+.... .+....|++.++|.+--+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHH
Confidence 65543 3333221 12357889999999877776655533222111 223467888899977543
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.09 E-value=7.4e-05 Score=76.15 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=62.7
Q ss_pred CccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh-hhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCC
Q 047556 288 GKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-HVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDL 365 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 365 (1175)
+.+-++|+|++..-....++.+...+......+.+|++|++. .+...+ .....+.+.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 567789999996655556777777776655566677666543 222221 133689999999999988887761
Q ss_pred CcchhHHHHHHHHHHhcCCchHH
Q 047556 366 TAQQISDLFRDKVVGKCRGLPLA 388 (1175)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPla 388 (1175)
.. .+.+..|++.++|.|..
T Consensus 169 i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC----HHHHHHHHHHcCCCccc
Confidence 11 24567899999998853
No 95
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=5.7e-05 Score=85.02 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=106.8
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCcEEEEEEccCCChHHHHHHHHhccccccc------------------cc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS----GHANIAVIPIVGMGGIGKTTLAREVYNDKEVET------------------FK 239 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~ 239 (1175)
..++|-+..++.+..++...... +..-...+.++|+.|+|||++|+.+++..-... .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999999998764310 001346788999999999999999876321110 01
Q ss_pred cceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHH-----hcCccEEEEEecCccCCcccHHHHhcccC
Q 047556 240 FDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKA-----VDGKKIFLVLDDVWNEDYGLWEDLKAPLM 314 (1175)
Q Consensus 240 f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~~~~~~~l~~~l~ 314 (1175)
.| +.++.... .....+++. .+.+. ..+++-++|+|+++.-.......+...+.
T Consensus 85 pD-~~~i~~~~--------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PD-VRVVAPEG--------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CC-EEEecccc--------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 11 11111100 001112211 12121 13556688899997665556666777666
Q ss_pred CCCCCcEEEEecCCh-hhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 315 GAAPNSKIVVTTRHS-HVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 315 ~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
....+..+|++|.+. .+...+ .....+.+.+++.++..+.+..... .+ .+.+..+++.++|.|.....
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VD---PETARRAARASQGHIGRARR 212 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CC---HHHHHHHHHHcCCCHHHHHH
Confidence 555566666665553 333222 2346899999999999888874321 11 23456789999999975443
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.08 E-value=2.7e-05 Score=94.30 Aligned_cols=172 Identities=20% Similarity=0.237 Sum_probs=94.8
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKA---KILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~---~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
+.|+|.+..+. .+...+.. .....+.++|++|+||||+|+.+++.... .|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~~---~f~---~lna~~-~~i---- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTRA---HFS---SLNAVL-AGV---- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhcC---cce---eehhhh-hhh----
Confidence 46889887764 45555543 34456789999999999999999975332 331 111110 000
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHh--cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE--ecCChh--hh
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAV--DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV--TTRHSH--VA 332 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~ 332 (1175)
.+..+......+.+ .+++.+||+||++.-....++.+...+. .|..++| ||.+.. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111111121111 2467899999997644445555554332 3555555 344432 11
Q ss_pred hhc-CCCCeeeCCCCChhhhHHHHHhhhccCCC---CCcchhHHHHHHHHHHhcCCchH
Q 047556 333 STM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRD---LTAQQISDLFRDKVVGKCRGLPL 387 (1175)
Q Consensus 333 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~---~~~~~~~~~~~~~i~~~c~glPl 387 (1175)
... .....+.+++++.++...++.+.+..... .......++....|++.+.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 12357899999999999998876531000 00111223445677888877643
No 97
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.07 E-value=0.00012 Score=76.94 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=120.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccc---ccceEEEEEeCCCCCHHHHHHHHHHHh
Q 047556 189 QDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETF---KFDIKAWVCVSEDFDVLSISRAILESI 265 (1175)
Q Consensus 189 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~~~~~~~~~il~~l 265 (1175)
+.++++.+++..+.. .+.+-+.|||.+|.|||++++.+.+.+..... .--.++.|.....++...++..|+.++
T Consensus 44 ~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 456666777765533 56677999999999999999999876532110 112467788889999999999999999
Q ss_pred cCCCCCccchHHHHHHHHHHhcC-ccEEEEEecCccC---CcccHHHH---hcccCCCCCCcEEEEecCChhhhhhc---
Q 047556 266 TYSSCDLKALNEVQVQLKKAVDG-KKIFLVLDDVWNE---DYGLWEDL---KAPLMGAAPNSKIVVTTRHSHVASTM--- 335 (1175)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~---~~~~~~~l---~~~l~~~~~gs~iivTtr~~~v~~~~--- 335 (1175)
+.+.................++. +--+||+|.+.+- ...+-.++ ...+...-.-+-|.|-|++..-+-..
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 99876666666656555566643 4558999999542 11112222 23333333445566666543222111
Q ss_pred --CCCCeeeCCCCChhhhH-HHHHhhh--ccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 336 --EPIQQYNLRCLSDEDCW-SLFMMHA--FVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 336 --~~~~~~~l~~L~~~e~~-~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
.-..++.+...+.++-+ .|+.... ..-+. ..+-...++++.|...++|+.=-+.
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHH
Confidence 12345666666555444 4443221 11111 1222345678999999999875443
No 98
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8.3e-05 Score=87.90 Aligned_cols=196 Identities=17% Similarity=0.147 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccc-ccceEEEEEeCCCCCHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETF-KFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
.++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+..-.... ....... ..+..-..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468998888888999887642 2356789999999999999998664321100 0000000 01111111111
Q ss_pred HHHHhc-----CCCCCccchHHHHHHHHH----HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEec-CChh
Q 047556 261 ILESIT-----YSSCDLKALNEVQVQLKK----AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTT-RHSH 330 (1175)
Q Consensus 261 il~~l~-----~~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 330 (1175)
|...-. .........++....+.. -..++.-++|+|+|+.-....+..+...+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 110000 000001112222222211 113456689999998766677888887776655566666554 4333
Q ss_pred hhhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 331 VAST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
+... ......+++++++.++..+.+.+.+...+.... .+....|++.++|.+--+.
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 3322 123478999999999998888876543322111 2345678889998774443
No 99
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=7e-06 Score=99.58 Aligned_cols=96 Identities=24% Similarity=0.275 Sum_probs=82.8
Q ss_pred HHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccc-cccccccCcccccEEeccCccccccCchhhhcc
Q 047556 593 FSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIR-NLPKSTCSLINLQILLLRGCYYLLKLPSKMRKL 671 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 671 (1175)
++..+..+++|+.|+|++|.+.+..+..++.+++|++|+|++|.+. .+|+.+++|++|++|+|++|...+.+|..++.+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 4556889999999999999998555578999999999999999998 789999999999999999998778999988764
Q ss_pred -CCCceeeecCccccccC
Q 047556 672 -INLRHLDITGAYLIKEM 688 (1175)
Q Consensus 672 -~~L~~L~l~~~~~~~~~ 688 (1175)
.++..+++.+|..+...
T Consensus 514 ~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 514 LLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cccCceEEecCCccccCC
Confidence 57788999888744333
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.04 E-value=8.7e-05 Score=77.00 Aligned_cols=187 Identities=13% Similarity=0.110 Sum_probs=102.7
Q ss_pred ccccch-hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 183 TVFGRH-QDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 183 ~~vgr~-~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
.++|.. +..-+..+.+....+ .....+.|+|..|+|||.|.+++++...... .-..+++++ ..++...+
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~------~~~f~~~~ 79 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLS------AEEFIREF 79 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEE------HHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeec------HHHHHHHH
Confidence 345642 333344444444322 3345689999999999999999998654321 112345554 44566666
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCc-ccHHH-HhcccCC-CCCCcEEEEecCChh--------
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDY-GLWED-LKAPLMG-AAPNSKIVVTTRHSH-------- 330 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtr~~~-------- 330 (1175)
...+... .. ..+++.++ .-=+|++||++.-.. ..|.+ +...+.. ...|.+||+|++...
T Consensus 80 ~~~~~~~-----~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 80 ADALRDG-----EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHHHTT-----SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHHHcc-----cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 6655431 11 22334444 345789999965322 22332 2222211 124678999996432
Q ss_pred -hhhhcCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHH
Q 047556 331 -VASTMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALG 393 (1175)
Q Consensus 331 -v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1175)
+...+...-.++++++++++-.+++.+.+...+.. ..++++.-|++.+.+..-.+..+-
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 22333456789999999999999999887543332 334566778888777666555443
No 101
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.02 E-value=1.2e-05 Score=87.53 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=60.7
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCccchHH------HHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF--DVLSISRAILESITYSSCDLKALNE------VQV 280 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~------~~~ 280 (1175)
..-.+|+|++|+||||||+++|++.... +|+..+||.+.... .+.++++.+...+-....+...... ...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999976543 79999999998877 7778888876322222111111111 111
Q ss_pred HHHHH-hcCccEEEEEecCc
Q 047556 281 QLKKA-VDGKKIFLVLDDVW 299 (1175)
Q Consensus 281 ~l~~~-l~~~r~LlVlDdv~ 299 (1175)
.-+.. -.+++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 11111 26899999999993
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00013 Score=85.88 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc------------------cccceE
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET------------------FKFDIK 243 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~ 243 (1175)
..++|-+..++.+..++.... -...+.++|+.|+||||+|+.+.+..-... ..|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999887642 235678999999999999999986432110 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE
Q 047556 244 AWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV 323 (1175)
Q Consensus 244 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1175)
+++..+...... .++++++.+.. .-..+++-++|+|+++.-.......+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd-~ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVD-AMRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHH-HHHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 222211111111 11112111110 0123567799999997655556777777776655566666
Q ss_pred EecCC-hhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHH
Q 047556 324 VTTRH-SHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKAL 392 (1175)
Q Consensus 324 vTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 392 (1175)
++|.+ +.+...+ .-...+++.+++.++..+.+.+.+...+.. ........|++.++|.+- |+..+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55543 3332211 123578899999999888887665322211 112345678899999774 44444
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00012 Score=86.73 Aligned_cols=196 Identities=16% Similarity=0.147 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccc--eEEEEEeCCCCCHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFD--IKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~ 259 (1175)
..++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+++...... ... ...+- .+..-..-+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~-~~~~~~~~~~----~cg~c~~C~ 93 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEG-PDGDGGPTID----LCGVGEHCQ 93 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCC-ccccCCCccc----cCcccHHHH
Confidence 468999999999999987642 335788999999999999999987532211 000 00000 001001111
Q ss_pred HHHHHhcCCC-----CCccchHHHHH---HHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE-ecCCh
Q 047556 260 AILESITYSS-----CDLKALNEVQV---QLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV-TTRHS 329 (1175)
Q Consensus 260 ~il~~l~~~~-----~~~~~~~~~~~---~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~ 329 (1175)
.|...-..+. ......+++.. .++. -..+++-++|+|++..-.....+.+...+......+.+|+ |+...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 2221111100 01111222221 1111 1234566899999966555567777777765555666655 44444
Q ss_pred hhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 330 HVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 330 ~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
.+...+ .....+.+..++.++....+.+.+...+... ..+....|++.++|.+.-+..
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 443222 1336789999999999888887664332211 123457789999998865543
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=7.5e-05 Score=85.46 Aligned_cols=197 Identities=14% Similarity=0.179 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEE-eCCCCCHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVC-VSEDFDVLSISRA 260 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~ 260 (1175)
..++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...... .+....|.. ....+..-..-+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~-~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCC-CcCcccccccCCCCCCCCHHHHH
Confidence 468999988898888887532 234588999999999999999887542211 111101110 0011111011111
Q ss_pred HHHHhcCC-----CCCccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEec-CCh
Q 047556 261 ILESITYS-----SCDLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTT-RHS 329 (1175)
Q Consensus 261 il~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~ 329 (1175)
+....... .......+++.. +.+.+ .+++-++|+|++..-....++.+...+......+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11100000 001111222222 22222 3566789999996655567888887776655566665554 433
Q ss_pred hhhhhcC-CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 330 HVASTME-PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 330 ~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
.+..... ....+++.++++++..+.+...+...+. ....+.+..|++.++|.+--+
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 3332211 2257889999999988888776532221 122345678999999977533
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.97 E-value=0.00011 Score=83.46 Aligned_cols=178 Identities=17% Similarity=0.168 Sum_probs=98.9
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS-------GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
..+.|++..++++.+.+...-.. +....+-+.++|++|+|||++|+++++.... .| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~---~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---TF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC---CE-----Eecch----
Confidence 46899999999999877432110 1123456899999999999999999985432 22 22211
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHH-HhcCccEEEEEecCccC-----------Ccc---cHHHHhcccCC--CC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNE-----------DYG---LWEDLKAPLMG--AA 317 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~ 317 (1175)
..+.... ++ ........+.+ .-...+.+|++|+++.- +.. .+..+...+.. ..
T Consensus 190 ~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111110 00 01111112222 22346789999998542 011 12222222221 12
Q ss_pred CCcEEEEecCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch
Q 047556 318 PNSKIVVTTRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 318 ~gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1175)
.+.+||.||....... .+ .-...+.+...+.++..++|..++..... ..... ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 4677888887543221 11 22457899999999999999887644322 11112 245777777654
No 106
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=0.00016 Score=83.55 Aligned_cols=169 Identities=13% Similarity=0.082 Sum_probs=101.6
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
...+.|+|..|+|||+|++++++...... .-..+++++ ..++...+...+.... .....+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-
Confidence 35689999999999999999988533211 112334443 3456666666654311 11223444443
Q ss_pred ccEEEEEecCccCCc-ccH-HHHhcccCC-CCCCcEEEEecCCh---------hhhhhcCCCCeeeCCCCChhhhHHHHH
Q 047556 289 KKIFLVLDDVWNEDY-GLW-EDLKAPLMG-AAPNSKIVVTTRHS---------HVASTMEPIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 356 (1175)
..-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 345888999954321 122 333332221 12355788887643 222333455678899999999999999
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHH
Q 047556 357 MHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGG 394 (1175)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 394 (1175)
+.+...+. .....+++..-|++.++|.|-.+.-+..
T Consensus 286 ~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 88743221 0123355678899999999977765543
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=97.95 E-value=7.9e-05 Score=78.40 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=92.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.|+|..|+|||+|++++++....+ -..++|++... +... . ..+.+.+++-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 578999999999999999998753321 23456666432 1110 0 1222233333
Q ss_pred cEEEEEecCccCC-cccHHH-HhcccCC-CCCCcEEEEecCChhh---------hhhcCCCCeeeCCCCChhhhHHHHHh
Q 047556 290 KIFLVLDDVWNED-YGLWED-LKAPLMG-AAPNSKIVVTTRHSHV---------ASTMEPIQQYNLRCLSDEDCWSLFMM 357 (1175)
Q Consensus 290 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~v---------~~~~~~~~~~~l~~L~~~e~~~lf~~ 357 (1175)
. +||+||+.... ...|+. +...+.. ...|..||+|++...- ...+....+++++++++++-.+.+..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 3 67899995321 234543 3333321 2246788998875321 12233446789999999999999986
Q ss_pred hhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 047556 358 HAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLL 396 (1175)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 396 (1175)
++....- . ..+++..-|++++.|-.-++..+-..|
T Consensus 178 ka~~~~~-~---l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-H---LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-C---CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6643221 1 224566778888888766655544333
No 108
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.93 E-value=5.8e-05 Score=77.71 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=111.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEE-EEEeCCCCCHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKA-WVCVSEDFDVLSISR 259 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~ 259 (1175)
-..++|-+..+..+.+.+.. ...+....+|++|.|||+-|.++++..-... -|.+++ =.++|..-... +.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~-~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQ-LFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcc-ccccchhhhccccccccc-chh
Confidence 35689999999999999876 2447899999999999999999887543322 344443 22333221111 000
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHHHh--cCcc-EEEEEecCccCCcccHHHHhcccCCCCCCcE-EEEecCChhhhhhc
Q 047556 260 AILESITYSSCDLKALNEVQVQLKKAV--DGKK-IFLVLDDVWNEDYGLWEDLKAPLMGAAPNSK-IVVTTRHSHVASTM 335 (1175)
Q Consensus 260 ~il~~l~~~~~~~~~~~~~~~~l~~~l--~~~r-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-iivTtr~~~v~~~~ 335 (1175)
+ ...+...+........ .-++ -.+|||+++.-..+.|..+...+......++ |+||+--..+...+
T Consensus 107 ~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 E----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred h----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 0 0011111111000000 0123 4889999988888999999998887666666 45555443333211
Q ss_pred -CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 336 -EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 336 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
.-..-|..++|.+++...-+...+-.++...+ .+..+.|++.++|-
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCc
Confidence 12246888999999998888887754433222 23456788888884
No 109
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.00023 Score=72.64 Aligned_cols=176 Identities=20% Similarity=0.240 Sum_probs=99.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..|||.++-++.+.=.+......+ ..+--|.++|++|.||||||.-++++..+. + -++-++...-...+..+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn---~----k~tsGp~leK~gDlaai 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANELGVN---L----KITSGPALEKPGDLAAI 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHHhcCC---e----EecccccccChhhHHHH
Confidence 479999998888887776654433 567789999999999999999999975442 1 12222211111222223
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccC--------CCCCCcE-----------E
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLM--------GAAPNSK-----------I 322 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~--------~~~~gs~-----------i 322 (1175)
+..+. ..=++++|.+..-....-+-+..++. ..++++| |
T Consensus 98 Lt~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 98 LTNLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred HhcCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 33222 22344455554322211111111111 1122332 3
Q ss_pred EEecCChhhhhhcC--CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 323 VVTTRHSHVASTME--PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 323 ivTtr~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
=-|||.-.+..-+. -.-+.+++--+.+|-.+...+.+..-.. +..++.+.+|+++.+|-|--..-
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnR 222 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANR 222 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHH
Confidence 35888655543322 1245677888889988888887732221 22234578899999999964433
No 110
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.8e-06 Score=92.35 Aligned_cols=42 Identities=10% Similarity=-0.003 Sum_probs=26.1
Q ss_pred CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCC
Q 047556 782 PCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCT 823 (1175)
Q Consensus 782 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 823 (1175)
..+.|+.|++..|.+...++.-.-..+++|+.|.+..|.+..
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 356788888887776555532111136777777777776643
No 111
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.2e-06 Score=91.83 Aligned_cols=111 Identities=23% Similarity=0.163 Sum_probs=57.6
Q ss_pred hhhcCCCccEEEecccccccCC--CCccCCcccccEEEeccccccccccc--ccCcccccEEeccCcccc-ccCchhhhc
Q 047556 596 LLSKCRKLRVLSLSRSYITELP--KGSMSGWKHLRYLNLSHTWIRNLPKS--TCSLINLQILLLRGCYYL-LKLPSKMRK 670 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~--~~~~~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~l-~~lp~~i~~ 670 (1175)
....|+++|.||||+|-+.... ......|++|+.|+|+.|.+...-++ -..+.+|+.|.|+.|... ..+-.....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 4456777777777776544321 02345666777777777765533222 224666777777777322 112222345
Q ss_pred cCCCceeeecCccccccCCccCCCCCCccccCceee
Q 047556 671 LINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIV 706 (1175)
Q Consensus 671 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~ 706 (1175)
+++|..|+|.+|..+..-......++.|+.|++..+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 566777777666422222222333455555555444
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00013 Score=87.64 Aligned_cols=194 Identities=14% Similarity=0.153 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...... .. .....+..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~-~~------~~~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTT-ND------PKGRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCC-CC------CCCCCCccCHHHHHH
Confidence 468999999999988887542 235678999999999999999987432110 00 000111122223333
Q ss_pred HHHhcCCC-----CCccchHHHHHHHHHH-----hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC-hh
Q 047556 262 LESITYSS-----CDLKALNEVQVQLKKA-----VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-SH 330 (1175)
Q Consensus 262 l~~l~~~~-----~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 330 (1175)
....+... ......++.. .+.+. ..+++-++|+|++..-.....+.+...+......+.+|++|.+ ..
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 22211110 0111122221 12121 1356779999999654445667777666555455666655543 33
Q ss_pred hhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 331 VASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
+.... .....+.+..++.++....+...+...+... ..+.+..|++.++|.+..+...
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 33221 2235788999999998888877664322211 2235678999999988655443
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00022 Score=83.74 Aligned_cols=197 Identities=17% Similarity=0.197 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
.+++|-+..++.|...+.... -...+.++|+.|+||||+|+.+++..-... ... ...+..-...+.+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~-~~~-------~~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCET-APT-------GEPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccC-CCC-------CCCCcccHHHHHH
Confidence 468898888888888886532 236788999999999999999987542211 000 0011111111111
Q ss_pred HHHhcCCC-----CCccchHHHHHHHHHH-----hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC-hh
Q 047556 262 LESITYSS-----CDLKALNEVQVQLKKA-----VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-SH 330 (1175)
Q Consensus 262 l~~l~~~~-----~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 330 (1175)
........ ......++.. .+.+. ..+++-++|+|++..-....+..+...+........+|++|.+ ..
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred hcCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 11100000 0001112111 12211 2456779999999765556677777776544345555555544 44
Q ss_pred hhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch-HHHHHHHHHh
Q 047556 331 VASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP-LAAKALGGLL 396 (1175)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 396 (1175)
+...+ .-...+++.+++.++..+.+...+...... ...+.+..|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 43221 223578999999999998887765432221 12334677889999954 6777766544
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00026 Score=80.85 Aligned_cols=181 Identities=15% Similarity=0.179 Sum_probs=103.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc-----cccceEE-EEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET-----FKFDIKA-WVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~~f~~~~-wv~~s~~~~~~ 255 (1175)
..++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+.+...... ..|...+ -+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 46899999999999998753 2346889999999999999999977432110 0111111 1111111111
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEec-CChhhhhh
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTT-RHSHVAST 334 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~ 334 (1175)
+..+++++.+... -..+++-++|+|++..-....+..+...+......+.+|++| ....+...
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111112111100 113456689999996544445666666554433445555554 33333222
Q ss_pred -cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHH
Q 047556 335 -MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLA 388 (1175)
Q Consensus 335 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1175)
......+++.++++++....+...+...+-.- ..+....+++.++|.+-.
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALRD 205 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHHH
Confidence 12335789999999998888887664332211 133567788889986653
No 115
>PF14516 AAA_35: AAA-like domain
Probab=97.88 E-value=0.00062 Score=75.78 Aligned_cols=200 Identities=13% Similarity=0.093 Sum_probs=116.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-----CCHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-----FDVLS 256 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~ 256 (1175)
+..|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+..+ + .++++++..- .+...
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~~--~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQG--Y-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHCC--C-EEEEEEeecCCCcccCCHHH
Confidence 34568886666777777542 26899999999999999999987654432 3 3457776431 34555
Q ss_pred HHHHHHHHh----cCCCC-------CccchHHHHHHHHHHh---cCccEEEEEecCccCC--cccHHHHhcccC----CC
Q 047556 257 ISRAILESI----TYSSC-------DLKALNEVQVQLKKAV---DGKKIFLVLDDVWNED--YGLWEDLKAPLM----GA 316 (1175)
Q Consensus 257 ~~~~il~~l----~~~~~-------~~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~--~~~~~~l~~~l~----~~ 316 (1175)
.++.++..+ +.... ...........+.+++ .+++.+|++|+++.-- ....+++...++ ..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 565555544 33221 0011122233344432 2689999999995421 111122222221 11
Q ss_pred C----CCc-E-EEEecCChhhhhhc-----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 317 A----PNS-K-IVVTTRHSHVASTM-----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 317 ~----~gs-~-iivTtr~~~v~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
. ... + |++-+......... .....+.|.+++.+|...|...+... ...+ ..++|...++|+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~~----~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQE----QLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCHH----HHHHHHHHHCCC
Confidence 1 111 2 22222111111111 12357889999999999998876422 1111 267899999999
Q ss_pred hHHHHHHHHHhcCC
Q 047556 386 PLAAKALGGLLRSK 399 (1175)
Q Consensus 386 Plai~~~~~~l~~~ 399 (1175)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999765
No 116
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.00035 Score=76.32 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=111.6
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 180 TERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 180 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.+..++||+.++..+.+++...-+. ...+.+-|.|.+|.|||.+...++.+..... .-..++++++..-....+++.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccchHHHHH
Confidence 3457999999999999998765332 4557789999999999999999998765433 122457777766567778888
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHHHhcC--ccEEEEEecCccCCcccHHHHhcccCC-CCCCcEEEEecCChh------
Q 047556 260 AILESITYSSCDLKALNEVQVQLKKAVDG--KKIFLVLDDVWNEDYGLWEDLKAPLMG-AAPNSKIVVTTRHSH------ 330 (1175)
Q Consensus 260 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~------ 330 (1175)
.|...+-..........+....+.+...+ ..+|+|+|.++.-....-..+...|.+ .-+++++|+.---..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 88887722211111224445555555544 368999999843111111222333322 335667665432111
Q ss_pred hhhhc-----CCCCeeeCCCCChhhhHHHHHhhhc
Q 047556 331 VASTM-----EPIQQYNLRCLSDEDCWSLFMMHAF 360 (1175)
Q Consensus 331 v~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~ 360 (1175)
....+ .....+...|-+.++-.++|..+..
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 11111 1335778899999999999988764
No 117
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.3e-05 Score=58.22 Aligned_cols=38 Identities=32% Similarity=0.403 Sum_probs=20.6
Q ss_pred cccEEEecccccccccccccCcccccEEeccCccccccC
Q 047556 626 HLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKL 664 (1175)
Q Consensus 626 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 664 (1175)
+|++|++++|.|+.+|..+++|++|++|++++| .+..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 455666666666666555566666666666665 34433
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.0004 Score=82.82 Aligned_cols=194 Identities=15% Similarity=0.183 Sum_probs=108.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccce-EEEEE---eCCCCCHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDI-KAWVC---VSEDFDVLSI 257 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~---~s~~~~~~~~ 257 (1175)
..++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++..-.......+ .+-.| ....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 468999999999999987642 23567899999999999999998642111100000 00000 00000000
Q ss_pred HHHHHHHhcC-CCCCccchHHHHHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE-EecCChhhhhh
Q 047556 258 SRAILESITY-SSCDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV-VTTRHSHVAST 334 (1175)
Q Consensus 258 ~~~il~~l~~-~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~~ 334 (1175)
.+.. ......+..++...+.. -..+++-++|+|++..-....+..+...+........+| +|++...+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 00001112222222221 123667799999997655567778877776544455544 55554444332
Q ss_pred -cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHH
Q 047556 335 -MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKAL 392 (1175)
Q Consensus 335 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 392 (1175)
......+.+.+++.++..+.+...+...+... ..+.+..|++.++|.+- |+..+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22336899999999999888876553322111 12345679999998664 44443
No 119
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.84 E-value=4.2e-05 Score=83.86 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=61.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCccch------HHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED--FDVLSISRAILESITYSSCDLKAL------NEVQV 280 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~------~~~~~ 280 (1175)
-..++|+|++|+|||||++.+++....+ +|+..+||.+... .++.++++.++..+-....+.... .....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n--hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN--HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc--CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3689999999999999999999976543 6999999999855 789999999855433222221111 11111
Q ss_pred HHHHH-hcCccEEEEEecCc
Q 047556 281 QLKKA-VDGKKIFLVLDDVW 299 (1175)
Q Consensus 281 ~l~~~-l~~~r~LlVlDdv~ 299 (1175)
..... -.+++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 36899999999994
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00035 Score=85.94 Aligned_cols=190 Identities=11% Similarity=0.068 Sum_probs=108.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..+||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...... .... ..+..-..-+.|
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~-~~~~-------~pCg~C~sC~~~ 81 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVE-GPTS-------TPCGECDSCVAL 81 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCccc-CCCC-------CCCcccHHHHHH
Confidence 468999999999999987642 235678999999999999999987542211 0000 000000001111
Q ss_pred HHH-------hcCCCCCccchHHHHH---HHH-HHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEec-CCh
Q 047556 262 LES-------ITYSSCDLKALNEVQV---QLK-KAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTT-RHS 329 (1175)
Q Consensus 262 l~~-------l~~~~~~~~~~~~~~~---~l~-~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~ 329 (1175)
... +.........++++.. .+. .-..+++-++|||+++.-....+..|...+......+.+|++| ...
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 100 0000000011222221 111 1124566789999997766677888888887665666666555 444
Q ss_pred hhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHH
Q 047556 330 HVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLA 388 (1175)
Q Consensus 330 ~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1175)
.+...+ .-...|++..++.++..+.+.+.....+. .. ..+....|++.++|.+..
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~i---d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-PV---EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHH
Confidence 444322 23468999999999988888765432221 11 122346789999998743
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00055 Score=80.81 Aligned_cols=198 Identities=16% Similarity=0.125 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++.|..++..+ .-...+.++|+.|+||||+|+.+++...... ..+ + ..+..-...+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-~~~---~----~pCg~C~~C~~i 79 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQ-GPT---A----TPCGVCESCVAL 79 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcccc-CCC---C----CcccccHHHHHh
Confidence 46899999999999998764 2235678999999999999999987532110 000 0 000000011111
Q ss_pred HHHhc-------CCCC---CccchHHHHHHHHHH-hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE-ecCCh
Q 047556 262 LESIT-------YSSC---DLKALNEVQVQLKKA-VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV-TTRHS 329 (1175)
Q Consensus 262 l~~l~-------~~~~---~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~ 329 (1175)
...-+ .... ...+..++...+... ..+++-++|+|++..-.......+...+........+|+ ||...
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 10000 0000 111111222222111 235667999999977666777888777776555666554 54444
Q ss_pred hhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHHHHHh
Q 047556 330 HVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKALGGLL 396 (1175)
Q Consensus 330 ~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~l 396 (1175)
.+...+ .-...+++..++.++..+.+.+.+...+.... .+....|++.++|.+- |+..+-.++
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 443322 23468999999999988888776543222111 2345678889999774 555554433
No 122
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.82 E-value=0.00012 Score=81.79 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=72.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..+++.+...+.+...+... +.+.++|++|+|||++|+.+++...... .|+.+.||.+++..+..+++...
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeecccccHHHHhccc
Confidence 35788899999999998753 4688899999999999999998654444 67889999999888877665422
Q ss_pred HHHhcCCCCCccchH-HHHHHHHHHh--cCccEEEEEecCccCCc
Q 047556 262 LESITYSSCDLKALN-EVQVQLKKAV--DGKKIFLVLDDVWNEDY 303 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~-~~~~~l~~~l--~~~r~LlVlDdv~~~~~ 303 (1175)
. .....-.-.+ ...+.+.+.. .++++++|+|++...+.
T Consensus 246 r----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 246 R----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred C----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 1 1100000011 1112222222 24689999999965443
No 123
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00052 Score=79.38 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=105.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc--------------------cccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET--------------------FKFD 241 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~ 241 (1175)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++..-... .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999987532 236788999999999999999876432110 0111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHH-HHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCc
Q 047556 242 IKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLK-KAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNS 320 (1175)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (1175)
.+++........ .+..+....+. ....+.+-++|+|++..-.....+.+...+.......
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111110000001 11111111111 1123567789999996544445566666665544566
Q ss_pred EEEEecC-Chhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHH
Q 047556 321 KIVVTTR-HSHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKAL 392 (1175)
Q Consensus 321 ~iivTtr-~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 392 (1175)
.+|++|. ...+...+ .....+++.++++++....+...+...+.. ...+.+..|++.++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666553 33332221 233578999999999888877665322211 123356779999999664 44443
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00069 Score=78.66 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc-------------------cccce
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET-------------------FKFDI 242 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~ 242 (1175)
..++|-+..++.+...+..+ .-..+..++|+.|+||||+|+.+++..-... .+++
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 46899999999999988654 2335678999999999999998776431110 0111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHH----HhcCccEEEEEecCccCCcccHHHHhcccCCCCC
Q 047556 243 KAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKK----AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAP 318 (1175)
Q Consensus 243 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 318 (1175)
++.+..+... ..+++...+.. -..+++-++|+|++..-..+....+...+.....
T Consensus 88 v~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 1111111111 12222222211 0125567999999977666677778777766556
Q ss_pred CcEEEEecCCh-hhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 319 NSKIVVTTRHS-HVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 319 gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
.+.+|++|.+. .+.... .....+++.+++.++..+.+...+...+... ..+.+..|++.++|.+--+..
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHH
Confidence 67766666553 222111 1236889999999999888876654332211 133567799999998854433
No 125
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.80 E-value=0.00031 Score=81.22 Aligned_cols=161 Identities=15% Similarity=0.097 Sum_probs=91.8
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
...+.|+|..|+|||+|++++++...... .-..++++++ .++..++...+... ..+. +.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHHh
Confidence 35689999999999999999998653221 1124456643 33444455544321 1222 2233332
Q ss_pred ccEEEEEecCccCCcc-cH-HHHhcccCCC-CCCcEEEEecCCh-h--------hhhhcCCCCeeeCCCCChhhhHHHHH
Q 047556 289 KKIFLVLDDVWNEDYG-LW-EDLKAPLMGA-APNSKIVVTTRHS-H--------VASTMEPIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~e~~~lf~ 356 (1175)
.-+||+||+...... .+ +.+...+... ..|..||+|+... . +...+.....+.+++.+.++-.+++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 348899999642211 11 2232222111 2345678877642 2 22223334578999999999999998
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 357 MHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
..+...... ..+++...|++.+.|.+-.+.
T Consensus 279 ~~~~~~~~~----l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 279 KKAEEEGLE----LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHcCCC----CCHHHHHHHHHhcCCCHHHHH
Confidence 887543221 224456778888888765443
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00043 Score=82.36 Aligned_cols=200 Identities=15% Similarity=0.165 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEE-eCCCCCHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVC-VSEDFDVLSISRA 260 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~ 260 (1175)
..++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++..-... ..+...|.. +...+..-..-+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~-~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCC-cCCccccccccCCCCccCHHHHH
Confidence 468999999999988886532 235588999999999999998887532211 111001110 0011111111111
Q ss_pred HHHHhcCC-----CCCccchHHHHHHHHHH----hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE-EecCChh
Q 047556 261 ILESITYS-----SCDLKALNEVQVQLKKA----VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV-VTTRHSH 330 (1175)
Q Consensus 261 il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~ 330 (1175)
+...-... .......+++...+... ..+.+-++|+|+++.-.....+.+...+......+.+| +|++...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 11100000 00111123332222111 24566689999997655556777777776654555554 4544444
Q ss_pred hhhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHH
Q 047556 331 VAST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKA 391 (1175)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~ 391 (1175)
+... ......+++.+++.++....+.+.+...+.. ...+.+..|++.++|..- |+..
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~----I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ----IDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHH
Confidence 4332 2234689999999999887777655322211 123346779999999554 4443
No 127
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00079 Score=78.36 Aligned_cols=183 Identities=14% Similarity=0.110 Sum_probs=105.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc------------------cccceE
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET------------------FKFDIK 243 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~ 243 (1175)
..++|.+..++.+..++.... -.....++|+.|+||||+|+.++....... ..+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468899999999999987642 235677899999999999999876432100 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEE
Q 047556 244 AWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKI 322 (1175)
Q Consensus 244 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (1175)
+++..+.... ..+...+...+.. -..+++-++|+|+++.-.....+.+...+........+
T Consensus 91 ~eidaas~~g------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRG------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCC------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1121111000 0111111111111 12456779999999655555667777666655445555
Q ss_pred EEec-CChhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 323 VVTT-RHSHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 323 ivTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
|++| +...+.... .....+.+.+++.++....+...+...+... ..+.+..|++.++|.+-.+..
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 5544 433333221 2235789999999998888877654322211 123456788889997654443
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.79 E-value=0.00016 Score=80.79 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=83.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.... ....++.+. ... ...+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~~------~~~~i~~~~-~~~-~~i~~~ 87 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVGA------EVLFVNGSD-CRI-DFVRNR 87 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCc------cceEeccCc-ccH-HHHHHH
Confidence 56899999999999988753 33467788999999999999999875311 123344433 111 111111
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCCCCCcEEEEecCChhh-hhhc-CCC
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGAAPNSKIVVTTRHSHV-ASTM-EPI 338 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~-~~~ 338 (1175)
+..+... ..+.+.+-++|+||+... ..+..+.+...+.....++++|+||..... ...+ ...
T Consensus 88 l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 001234568999999644 222333444444444567788888865431 1111 122
Q ss_pred CeeeCCCCChhhhHHHHH
Q 047556 339 QQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 339 ~~~~l~~L~~~e~~~lf~ 356 (1175)
..+.+...+.++..+++.
T Consensus 153 ~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred eEEEeCCCCHHHHHHHHH
Confidence 356666667776665544
No 129
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.79 E-value=0.00046 Score=70.30 Aligned_cols=126 Identities=24% Similarity=0.278 Sum_probs=73.3
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 179 PTERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 179 ~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
+.-+.++|-+.+++.+++-...=-. | ....-|.+||..|+|||++++++.+....++ .--|.+..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~G-----LRlIev~k-------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ-G-LPANNVLLWGARGTGKSSLVKALLNEYADQG-----LRLIEVSK-------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC-----ceEEEECH--------
Confidence 3456799999999888874322110 1 2234577899999999999999998644332 11122221
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCcc-CCcccHHHHhcccCCC----CCCcEEEEecCChhhh
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWN-EDYGLWEDLKAPLMGA----APNSKIVVTTRHSHVA 332 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~-~~~~~~~~l~~~l~~~----~~gs~iivTtr~~~v~ 332 (1175)
.+..++..+...++. +..||+|++||+-- ........+...+..+ ..+..|..||..++..
T Consensus 89 -----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 222344444444442 35799999999843 2334455665555432 2344455566555443
No 130
>PRK06620 hypothetical protein; Validated
Probab=97.76 E-value=0.00053 Score=70.77 Aligned_cols=137 Identities=16% Similarity=0.067 Sum_probs=79.4
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
+.+.|+|++|+|||+|++.+++.... .++. ..+. .+ +.. +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~--------~~~~--~~~~---------------------~~-------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA--------YIIK--DIFF---------------------NE-------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC--------EEcc--hhhh---------------------ch-------hHH-hc
Confidence 56899999999999999998774321 1111 0000 00 011 12
Q ss_pred cEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-------hhhhcCCCCeeeCCCCChhhhHHHHHhhhccC
Q 047556 290 KIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH-------VASTMEPIQQYNLRCLSDEDCWSLFMMHAFVS 362 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 362 (1175)
.-++++||+..-.....-.+...+. ..|..||+|++... ....+....+++++++++++-.+++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3578899995211111112222222 34668999987432 23334455689999999999888887766422
Q ss_pred CCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 363 RDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
+- ...+++..-|++++.|---.+.-
T Consensus 164 ~l----~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 164 SV----TISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred CC----CCCHHHHHHHHHHccCCHHHHHH
Confidence 11 12244567788888776554443
No 131
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.00034 Score=75.39 Aligned_cols=161 Identities=13% Similarity=0.059 Sum_probs=81.1
Q ss_pred ccccchhhHHHHHHHHhcC--------C-CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCC
Q 047556 183 TVFGRHQDKAKILEMVSAN--------S-PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFD 253 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~--------~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 253 (1175)
.++|.+..++++.+..... . -...+....+.++|++|+||||+|+.+++.....+ .-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecHH--
Confidence 4788887776665432211 0 00013456788999999999999999987432111 1111123333221
Q ss_pred HHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC--------cccHHHHhcccCCCCCCcEEEEe
Q 047556 254 VLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED--------YGLWEDLKAPLMGAAPNSKIVVT 325 (1175)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivT 325 (1175)
++. ...- ..........+.+. ..-+|++|++..-. .+..+.+...+........+|++
T Consensus 84 --~l~----~~~~-----g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 --DLV----GEYI-----GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred --Hhh----hhhc-----cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 111 1100 00111112222221 23489999996411 12334444444444334455666
Q ss_pred cCChhhhh------hc-C-CCCeeeCCCCChhhhHHHHHhhhc
Q 047556 326 TRHSHVAS------TM-E-PIQQYNLRCLSDEDCWSLFMMHAF 360 (1175)
Q Consensus 326 tr~~~v~~------~~-~-~~~~~~l~~L~~~e~~~lf~~~~~ 360 (1175)
+...+... .. . -...+.+++++.+|-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54433211 00 1 124578899999998888887664
No 132
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2.3e-05 Score=57.04 Aligned_cols=41 Identities=37% Similarity=0.511 Sum_probs=35.1
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccc
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK 642 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~ 642 (1175)
++|++|++++|.|+.+| ..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999999998 469999999999999999987753
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00078 Score=80.72 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-... .+.. ....+..-...+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~--~~~~----~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN--SDKP----TPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC--cCCC----CCCCCcccHHHHHH
Confidence 468899999999999887642 225678999999999999999987542211 0000 00111111222222
Q ss_pred HHHhcCC-----CCCccchHHHHHHHHHH----hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC-hhh
Q 047556 262 LESITYS-----SCDLKALNEVQVQLKKA----VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-SHV 331 (1175)
Q Consensus 262 l~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 331 (1175)
....... .......++....+... ..+++-++|+|++..-....+..+...+........+|++|.+ ..+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 2221110 00111122222222111 1355678999999765556777787777654445555544443 333
Q ss_pred hhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 332 ASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 332 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
...+ .....+.+..++.++....+.+.+...+.... .+.+..|++.++|.+..+..
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 3221 22357888899998888777765543221111 23467789999998765443
No 134
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=6.5e-06 Score=95.46 Aligned_cols=103 Identities=27% Similarity=0.336 Sum_probs=55.1
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCce
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRH 676 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 676 (1175)
+..+++|..|++.+|.|..+. ..+..+.+|++|++++|.|+.+. .+..|..|+.|++++| .+..++. +..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhccC-Cccchhhhc
Confidence 455566666666666666654 22555666666666666666552 2455555666666666 4444432 444566666
Q ss_pred eeecCccccccCCcc-CCCCCCccccCce
Q 047556 677 LDITGAYLIKEMPFG-MKELKNLQALSNF 704 (1175)
Q Consensus 677 L~l~~~~~~~~~p~~-~~~L~~L~~L~~~ 704 (1175)
+++++|. +..+... ...+.+++.+.+.
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDLG 194 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhcc
Confidence 6666665 3333321 2444444444433
No 135
>CHL00181 cbbX CbbX; Provisional
Probab=97.72 E-value=0.00099 Score=72.15 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=72.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.++|++|+||||+|+.+++.....+ .-...-|+.++.. ++ ....-... .......+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g-~~~~~~~~~v~~~----~l----~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG-YIKKGHLLTVTRD----DL----VGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC-CCCCCceEEecHH----HH----HHHHhccc-----hHHHHHHHHHc---c
Confidence 4588999999999999999977532211 1111124444421 22 22211111 11112222222 2
Q ss_pred cEEEEEecCccC---------CcccHHHHhcccCCCCCCcEEEEecCChhhhhhc--------CCCCeeeCCCCChhhhH
Q 047556 290 KIFLVLDDVWNE---------DYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTM--------EPIQQYNLRCLSDEDCW 352 (1175)
Q Consensus 290 r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~e~~ 352 (1175)
.-+|++|++..- ..+..+.+...+.....+.+||+++....+.... .-...+.+.+++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 349999999531 1122233444444444566777777644432111 12357889999999998
Q ss_pred HHHHhhhc
Q 047556 353 SLFMMHAF 360 (1175)
Q Consensus 353 ~lf~~~~~ 360 (1175)
+++...+.
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 88877664
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00084 Score=80.49 Aligned_cols=181 Identities=16% Similarity=0.159 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccc--------------------ccccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVE--------------------TFKFD 241 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~~f~ 241 (1175)
..++|.+..++.+..++..+ .-...+.++|+.|+||||+|+.+.+..... +.+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899999999999998764 223568899999999999998887643210 00122
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcE
Q 047556 242 IKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSK 321 (1175)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (1175)
. ..+..+...... .++++++++... -..+++-++|+|++..-....++.+...+.....++.
T Consensus 92 ~-~~ld~~~~~~vd-~Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVD-DIRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHH-HHHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1 112211111111 111111211110 0134566889999976566677788877766555666
Q ss_pred EEE-ecCChhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 322 IVV-TTRHSHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 322 iiv-Ttr~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
+|+ ||+...+...+ .....+++.++++++....+.+.+...+.... .+.+..|++.++|..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 554 54544444322 23467999999999998888776543322111 234577899999966433
No 137
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.69 E-value=0.00023 Score=75.58 Aligned_cols=167 Identities=18% Similarity=0.206 Sum_probs=103.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
++.|.+|+.++..+..++..... .-+..|.|+|-.|.|||.+.+++.+.... ..+|+++-..++...++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHH
Confidence 45788999999999998876542 23456799999999999999999986532 3489999999999999999
Q ss_pred HHHHhcCCCCCcc-------chHHHHHHHHH--Hh--cCccEEEEEecCccCCcccHHH-----HhcccCCCCCCcEEEE
Q 047556 261 ILESITYSSCDLK-------ALNEVQVQLKK--AV--DGKKIFLVLDDVWNEDYGLWED-----LKAPLMGAAPNSKIVV 324 (1175)
Q Consensus 261 il~~l~~~~~~~~-------~~~~~~~~l~~--~l--~~~r~LlVlDdv~~~~~~~~~~-----l~~~l~~~~~gs~iiv 324 (1175)
|+.+.+....+.. ........+.+ .. +++.++||||+++.- .+.+. +.....-.....-+|+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~ii 153 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVII 153 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEE
Confidence 9999863222211 11222233333 11 246899999999432 11111 1111111111223344
Q ss_pred ecCCh--h-hhhhcCCC--CeeeCCCCChhhhHHHHHhh
Q 047556 325 TTRHS--H-VASTMEPI--QQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 325 Ttr~~--~-v~~~~~~~--~~~~l~~L~~~e~~~lf~~~ 358 (1175)
++-.. . ....++.. .++....-+.+|..+++.+.
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 33322 1 22223433 35566778888888887654
No 138
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.68 E-value=0.00062 Score=78.70 Aligned_cols=161 Identities=15% Similarity=0.074 Sum_probs=93.4
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccc-eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFD-IKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVD 287 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1175)
...+.|+|.+|+|||+||+++++..... +.+ .++|++. .++..++...+... ..+ .+++.++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~--~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN--EPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh--CCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 3459999999999999999999864322 222 4566653 34556665555321 122 2333333
Q ss_pred CccEEEEEecCccCC-cccH-HHHhcccCC-CCCCcEEEEecC-Chhhh--------hhcCCCCeeeCCCCChhhhHHHH
Q 047556 288 GKKIFLVLDDVWNED-YGLW-EDLKAPLMG-AAPNSKIVVTTR-HSHVA--------STMEPIQQYNLRCLSDEDCWSLF 355 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtr-~~~v~--------~~~~~~~~~~l~~L~~~e~~~lf 355 (1175)
.+.-+|++||+.... ...+ +.+...+.. ...|..||+||. .+.-. ..+.....+.+++.+.++-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 456689999996321 1111 223222211 113457888875 33221 12334457889999999999999
Q ss_pred HhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 356 MMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
.+.+...... ..+++...|++.+.|..-.+.
T Consensus 273 ~~~~~~~~~~----l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEHGE----LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcCCC----CCHHHHHHHHhccccCHHHHH
Confidence 8877432221 223456778888877554443
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.68 E-value=0.00013 Score=91.07 Aligned_cols=156 Identities=11% Similarity=0.162 Sum_probs=85.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEE-EEeCCCCCHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAW-VCVSEDFDVLSI 257 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~w-v~~s~~~~~~~~ 257 (1175)
..++||+.++.++++.|..... .-+.++|.+|+||||+|+.+++...... .-.+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 4689999999999998876432 3456999999999999999987532110 01222232 22221
Q ss_pred HHHHHHHhcCCCCCccchHH-HHHHHHHHh-cCccEEEEEecCccCC-------cccHHHHhcccCCCCCCcEEEEecCC
Q 047556 258 SRAILESITYSSCDLKALNE-VQVQLKKAV-DGKKIFLVLDDVWNED-------YGLWEDLKAPLMGAAPNSKIVVTTRH 328 (1175)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l-~~~r~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTtr~ 328 (1175)
+........+.+. +...+.+.- .+++.+|++|++..-. ..+-..+..+.... ..-++|-||..
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~ 325 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTW 325 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCH
Confidence 0000000111111 112222221 2578999999985421 11111233332222 13466666665
Q ss_pred hhhhhhc-------CCCCeeeCCCCChhhhHHHHHhh
Q 047556 329 SHVASTM-------EPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 329 ~~v~~~~-------~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
.+..... .-...+.+++++.++..+++...
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 4332111 23468999999999999997543
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.67 E-value=0.00038 Score=86.37 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=85.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
+.++||+.+++++++.|..... .-+.++|++|+|||++|+.+++...... ...+..+|.. + ...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-~----~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-D----MGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-c----HHHH-
Confidence 3689999999999998876432 3357999999999999999987542111 0113334321 1 1111
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHh-cCccEEEEEecCccCC------cc--cHHHHhcccCCCCCCcEEEEecCCh
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAV-DGKKIFLVLDDVWNED------YG--LWEDLKAPLMGAAPNSKIVVTTRHS 329 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~------~~--~~~~l~~~l~~~~~gs~iivTtr~~ 329 (1175)
+.... ...+.++....+.+.+ +.++.+|++|+++.-- .. +...+..+....+ .-++|-+|...
T Consensus 250 ---~a~~~----~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~ 321 (731)
T TIGR02639 250 ---LAGTK----YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYE 321 (731)
T ss_pred ---hhhcc----ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHH
Confidence 11000 0112222233333322 3468899999985210 00 1122222222221 23555555543
Q ss_pred hhhhh-------cCCCCeeeCCCCChhhhHHHHHhhh
Q 047556 330 HVAST-------MEPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 330 ~v~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
+.... ..-...+.++.++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22111 1123578999999999999988644
No 141
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=9.4e-06 Score=94.11 Aligned_cols=109 Identities=27% Similarity=0.352 Sum_probs=67.8
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceee
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLD 678 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 678 (1175)
.+..+..+.+..|.+..+. ..+..+.+|.+|++.+|.|..+...+..+.+|++|+|++| .+..+.. +..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhh-cccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhe
Confidence 3445555556666666543 4466677777777777777766555666777777777777 5655543 66666677777
Q ss_pred ecCccccccCCccCCCCCCccccCceeeccCCCc
Q 047556 679 ITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRS 712 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~ 712 (1175)
+++|. +..+. ++..+++|+.+++.++......
T Consensus 147 l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie 178 (414)
T KOG0531|consen 147 LSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIE 178 (414)
T ss_pred eccCc-chhcc-CCccchhhhcccCCcchhhhhh
Confidence 77776 33332 4555666666666666544433
No 142
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.0018 Score=75.90 Aligned_cols=160 Identities=12% Similarity=0.054 Sum_probs=91.4
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.|+|..|+|||.|++++++...... .-..+++++. .++..++...+... ..+ .+++.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc-
Confidence 4589999999999999999998643211 1123455543 33444444433211 111 23333333
Q ss_pred cEEEEEecCccCCc-ccHH-HHhcccCCC-CCCcEEEEecCCh---------hhhhhcCCCCeeeCCCCChhhhHHHHHh
Q 047556 290 KIFLVLDDVWNEDY-GLWE-DLKAPLMGA-APNSKIVVTTRHS---------HVASTMEPIQQYNLRCLSDEDCWSLFMM 357 (1175)
Q Consensus 290 r~LlVlDdv~~~~~-~~~~-~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~ 357 (1175)
.=+|||||+..... ..|+ .+...+... ..|..|||||+.. .+...+...-++.++..+.+.-.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 35788999964322 2222 222222211 2356788888752 2333445667899999999999999988
Q ss_pred hhccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 358 HAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
++....-.- .+++..-|++++.+..-.|.
T Consensus 458 ka~~r~l~l----~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 458 KAVQEQLNA----PPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHhcCCCC----CHHHHHHHHHhccCCHHHHH
Confidence 875433212 23455667777666544333
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0015 Score=78.27 Aligned_cols=195 Identities=17% Similarity=0.190 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++.+...+..+ .-...+.++|+.|+||||+|+.+++..-... ..+ ...+..-..-++|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~-~~~-------~~~c~~c~~c~~i 82 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQ-GLT-------AEPCNVCPPCVEI 82 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCC-CCC-------CCCCCccHHHHHH
Confidence 46899999999999988753 2235678999999999999999887532111 000 0000000111111
Q ss_pred HHHhcC-------C-CCCccchHHHHHHHHHH-hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE-ecCChhh
Q 047556 262 LESITY-------S-SCDLKALNEVQVQLKKA-VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV-TTRHSHV 331 (1175)
Q Consensus 262 l~~l~~-------~-~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 331 (1175)
...-.. . .....+..++...+... ..+++-++|+|+++.-+......+...+......+.+|+ ||....+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 110000 0 00011111222222111 134566899999976555667777777765545666554 5444444
Q ss_pred hhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch-HHHHHHH
Q 047556 332 ASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP-LAAKALG 393 (1175)
Q Consensus 332 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 393 (1175)
...+ .....+++.+++.++....+...+...+... ..+....|++.++|.. .|+..+-
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4322 2335788999999988877766543222111 1234567889999865 4555543
No 144
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=1.4e-05 Score=71.69 Aligned_cols=94 Identities=28% Similarity=0.284 Sum_probs=77.3
Q ss_pred hhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCc
Q 047556 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLR 675 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 675 (1175)
.+.+...|...+|++|.+.++|+..-.+++.++.|+|++|.|..+|..+..++.|+.|+++.| .+...|.-|..|.+|-
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD 126 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence 455667788889999999999866666677899999999999999999999999999999998 7778888888899999
Q ss_pred eeeecCccccccCCcc
Q 047556 676 HLDITGAYLIKEMPFG 691 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~~ 691 (1175)
.|+..+|. ...+|-.
T Consensus 127 ~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPENA-RAEIDVD 141 (177)
T ss_pred HhcCCCCc-cccCcHH
Confidence 99888877 4455533
No 145
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.60 E-value=0.0005 Score=86.41 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=86.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccc---ccccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVE---TFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
..++||+++++++++.|..... .-+.++|++|+|||++|+.++...... ...-+..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 3589999999999999976432 235699999999999999998754211 1011234443 1 111111
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHH-hcCccEEEEEecCccC-------CcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKA-VDGKKIFLVLDDVWNE-------DYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~-------~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
. ... ...+.++....+.+. -..++.+|++|++..- .......+..+....+ .-++|.+|...+
T Consensus 248 ----a---g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~e 318 (821)
T CHL00095 248 ----A---GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDE 318 (821)
T ss_pred ----c---cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHH
Confidence 1 111 112223322222222 2356899999998421 0011222332222222 345666666554
Q ss_pred hhhh-------cCCCCeeeCCCCChhhhHHHHHh
Q 047556 331 VAST-------MEPIQQYNLRCLSDEDCWSLFMM 357 (1175)
Q Consensus 331 v~~~-------~~~~~~~~l~~L~~~e~~~lf~~ 357 (1175)
.... ......+.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 3221 12345678888888888887754
No 146
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.00099 Score=76.74 Aligned_cols=154 Identities=15% Similarity=0.068 Sum_probs=86.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
...+.|+|+.|+|||+|++++++..... ...+++++ ...+...+...+... .. ..+++.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-
Confidence 3568899999999999999999864321 12345554 233444555544321 11 22333333
Q ss_pred ccEEEEEecCccCCcccH--HHHhcccCC-CCCCcEEEEecCCh---------hhhhhcCCCCeeeCCCCChhhhHHHHH
Q 047556 289 KKIFLVLDDVWNEDYGLW--EDLKAPLMG-AAPNSKIVVTTRHS---------HVASTMEPIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 356 (1175)
..-+|++||+.......| +.+...+.. ...|..||+||... .+...+.....+.+.+++.++-.+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 345888899854321111 222222211 11355788888542 122233445688999999999999998
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 357 MHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
+.+...... ..+++..-|++.+.|.
T Consensus 282 ~k~~~~~~~----l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSIR----IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCCC----CCHHHHHHHHHhcCCC
Confidence 877543221 1233445566666543
No 147
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.57 E-value=0.00083 Score=72.86 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=72.3
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKK 290 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r 290 (1175)
-+.++|++|+|||++|+.+++.....+ .....-|+.++. .+ ++..+.... .......+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g-~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG-YVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC-CcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cC
Confidence 578999999999999987776432222 111112444442 12 222221111 11122222222 33
Q ss_pred EEEEEecCccC---------CcccHHHHhcccCCCCCCcEEEEecCChhhhhhcC--------CCCeeeCCCCChhhhHH
Q 047556 291 IFLVLDDVWNE---------DYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTME--------PIQQYNLRCLSDEDCWS 353 (1175)
Q Consensus 291 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--------~~~~~~l~~L~~~e~~~ 353 (1175)
-+|++|++..- ....++.+...+.....+.+||+++.......... -...+.+.+++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58999999521 11223445555555545667777775443221111 13568899999999999
Q ss_pred HHHhhhc
Q 047556 354 LFMMHAF 360 (1175)
Q Consensus 354 lf~~~~~ 360 (1175)
++...+.
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 8877653
No 148
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.56 E-value=0.00068 Score=77.22 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=96.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS-------GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
..+.|+++.++++.+.+...-.. |....+-|.++|++|+|||++|+++++.... . |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~---~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---T-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC---C-----EEEeeh----
Confidence 46899999999998876431110 1133466899999999999999999985322 2 222221
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHH-HhcCccEEEEEecCccC-----------CcccHHHHhccc---CC--CC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKK-AVDGKKIFLVLDDVWNE-----------DYGLWEDLKAPL---MG--AA 317 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~ 317 (1175)
..+ ...... ......+.+.+ .-...+.+|++||++.- +......+...+ .. ..
T Consensus 199 ~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SEL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 111100 01111122222 22356789999999531 011111222222 21 12
Q ss_pred CCcEEEEecCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 318 PNSKIVVTTRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 318 ~gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
.+..||.||...+... .+ .-...+.+...+.++-.++|..+.....- ...... ..+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCC
Confidence 3567777887654322 11 12357899999999999999877643221 111222 3466666663
No 149
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.0026 Score=70.67 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=95.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccc-eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFD-IKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
....+.|||..|.|||.|++++.+...... .+ .+++++ .......++..+.. .....+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~--~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANG--PNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhC--CCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 467899999999999999999998654321 22 233332 33344444443322 1233455555
Q ss_pred cCccEEEEEecCccCCc-ccHH----HHhcccCCCCCCcEEEEecCCh---------hhhhhcCCCCeeeCCCCChhhhH
Q 047556 287 DGKKIFLVLDDVWNEDY-GLWE----DLKAPLMGAAPNSKIVVTTRHS---------HVASTMEPIQQYNLRCLSDEDCW 352 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~~~-~~~~----~l~~~l~~~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~ 352 (1175)
.-=++++||++--.. +.|+ .+...+... |-.||+|++.. .+...+...-++.+.+.+.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 445889999954211 1222 223333332 44899998642 34445556678999999999999
Q ss_pred HHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 353 SLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 353 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
..+.+.+....-..+++...-++.++.+-.+-+.-|+..+
T Consensus 251 aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 251 AILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 9998876544443444444444444444333344444433
No 150
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.55 E-value=3.1e-05 Score=81.01 Aligned_cols=90 Identities=21% Similarity=0.153 Sum_probs=60.9
Q ss_pred HHhhhcCCCccEEEecccccccC----CCCccCCcccccEEEecccc----ccccccc-------ccCcccccEEeccCc
Q 047556 594 SNLLSKCRKLRVLSLSRSYITEL----PKGSMSGWKHLRYLNLSHTW----IRNLPKS-------TCSLINLQILLLRGC 658 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l----~~~~~~~l~~L~~L~L~~~~----i~~lp~~-------i~~L~~L~~L~L~~~ 658 (1175)
......+..+..|+||||.+..- ....+.+.++|+.-++++-. ..++|+. +-++++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 34456788899999999976521 11355666788888888642 2244543 446678999999988
Q ss_pred cccccCc----hhhhccCCCceeeecCcc
Q 047556 659 YYLLKLP----SKMRKLINLRHLDITGAY 683 (1175)
Q Consensus 659 ~~l~~lp----~~i~~L~~L~~L~l~~~~ 683 (1175)
-.-..-+ +-+.++..|++|+|.+|.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 4433333 335678889999998887
No 151
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.55 E-value=0.00096 Score=78.10 Aligned_cols=161 Identities=14% Similarity=0.081 Sum_probs=92.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
...+.|+|+.|+|||+|++++++...... .-..+++++.. .+..++...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh-
Confidence 35689999999999999999998654321 11234555433 3334444444221 112 2333333
Q ss_pred ccEEEEEecCccCCccc-H-HHHhcccCC-CCCCcEEEEecCChh---------hhhhcCCCCeeeCCCCChhhhHHHHH
Q 047556 289 KKIFLVLDDVWNEDYGL-W-EDLKAPLMG-AAPNSKIVVTTRHSH---------VASTMEPIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~ 356 (1175)
+.-+||+||+....... + +.+...+.. ...|..||+|+.... +...+.....+++++.+.++-.+++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 34489999995421111 1 223222211 113456888776532 22233445679999999999999999
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 357 MHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
..+..... ...+++...|++.+.|..-.+.
T Consensus 291 ~~~~~~~~----~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 291 KKAEEEGI----DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHcCC----CCCHHHHHHHHcCcCCCHHHHH
Confidence 88753221 1223456778888888765433
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.0027 Score=75.28 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|-+..++.+...+... .-...+.++|+.|+||||+|+.+++..-... .... ..+....+- +.+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-~~~~---~pC~~C~~C----~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVN-GPTP---MPCGECSSC----KSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcccc-CCCC---CCCccchHH----HHH
Confidence 46899999999999998764 2335788999999999999999987532110 0000 000000000 111
Q ss_pred HHHhcC-----CCCCccchHHHHHH---HHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC-hhh
Q 047556 262 LESITY-----SSCDLKALNEVQVQ---LKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-SHV 331 (1175)
Q Consensus 262 l~~l~~-----~~~~~~~~~~~~~~---l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 331 (1175)
...-.. ........++.... +.. -..+++-++|+|++..-...+++.+...+......+.+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 110000 00000112222211 111 12456778999999765556677787777655556666655543 333
Q ss_pred hhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHH
Q 047556 332 ASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 332 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1175)
...+ .....+++.+++.++..+.+.+.+...+.. ...+.+..|++.++|.+-.+.
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 3221 223578899999999888887766433221 123345678899999775433
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0028 Score=69.49 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccc------------ccccceEEEEEeC
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVE------------TFKFDIKAWVCVS 249 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------~~~f~~~~wv~~s 249 (1175)
..++|.+..++.+...+..+. -.....++|+.|+||+++|..+++..-.. ...+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368999999999999987642 23689999999999999998876542110 0012223444211
Q ss_pred CCCCHHHHHHHHHHHhcC--CCCCccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEE
Q 047556 250 EDFDVLSISRAILESITY--SSCDLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKI 322 (1175)
Q Consensus 250 ~~~~~~~~~~~il~~l~~--~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (1175)
...+-..+-..-++..+. .....-..++. +.+.+.+ .+.+-++|+|++..-.......+...+.......-|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 000000000111111110 00011112222 2333333 456789999999766666677777777544434344
Q ss_pred EEecCChhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 323 VVTTRHSHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 323 ivTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
++|+....+.... .-...+.+.++++++..+.+........ ... ....++..++|.|..+..+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~~~----~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---LNI----NFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---chh----HHHHHHHHcCCCHHHHHHH
Confidence 4555444443322 2346899999999999999987642111 011 1246889999999765543
No 154
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=9.2e-06 Score=72.77 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=84.4
Q ss_pred CCccEEEecccccccCCC--CccCCcccccEEEecccccccccccccC-cccccEEeccCccccccCchhhhccCCCcee
Q 047556 601 RKLRVLSLSRSYITELPK--GSMSGWKHLRYLNLSHTWIRNLPKSTCS-LINLQILLLRGCYYLLKLPSKMRKLINLRHL 677 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~--~~~~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 677 (1175)
+-+..++|++|.+-.++. ..+....+|...+|++|.+..+|+.|.. .+-+.+|+|++| .+..+|.++..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 456678999998776651 2345567888899999999999998765 458999999999 899999999999999999
Q ss_pred eecCccccccCCccCCCCCCccccCceee
Q 047556 678 DITGAYLIKEMPFGMKELKNLQALSNFIV 706 (1175)
Q Consensus 678 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~ 706 (1175)
+++.|. +...|..+..|.+|..|+.-.+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 999998 5667777777888777765443
No 155
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.45 E-value=0.00068 Score=80.50 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=41.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
-..++|-+..++++..++....-.. ...+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~-~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLEN-APKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc-CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987643221 334689999999999999999999753
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.44 E-value=0.00037 Score=66.43 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEccCCChHHHHHHHHhccc
Q 047556 212 IPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999864
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0025 Score=70.25 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=65.0
Q ss_pred CccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-hhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCC
Q 047556 288 GKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH-VASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDL 365 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 365 (1175)
+++-++|+|+++.-+......+...+.....++.+|+||.+.. +.... .-...+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 4455667899987777778888887766556777777776653 33222 23367899999999999888765311
Q ss_pred CcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 366 TAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
.. .+.+..++..++|.|.....+
T Consensus 181 ~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 122456788999999765443
No 158
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.39 E-value=0.004 Score=77.89 Aligned_cols=52 Identities=25% Similarity=0.454 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++|.+..++++.+++......+....+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999998887643211111233589999999999999999999864
No 159
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=7.1e-06 Score=83.29 Aligned_cols=82 Identities=26% Similarity=0.287 Sum_probs=52.9
Q ss_pred CccEEEeccccccc--CCCCccCCcccccEEEecccccc-cccccccCcccccEEeccCccccccCc--hhhhccCCCce
Q 047556 602 KLRVLSLSRSYITE--LPKGSMSGWKHLRYLNLSHTWIR-NLPKSTCSLINLQILLLRGCYYLLKLP--SKMRKLINLRH 676 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~--l~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~ 676 (1175)
.|++||||+..|+. +. ..++.+.+|+-|.|.++.+. .+-..|.+-.+|+.|+|+.|..+++.. -.+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHH-HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 57777777776542 22 34566677777777777665 344456667777777777776665432 22567777777
Q ss_pred eeecCccc
Q 047556 677 LDITGAYL 684 (1175)
Q Consensus 677 L~l~~~~~ 684 (1175)
|+++.|..
T Consensus 265 LNlsWc~l 272 (419)
T KOG2120|consen 265 LNLSWCFL 272 (419)
T ss_pred cCchHhhc
Confidence 77777763
No 160
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0081 Score=61.03 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=104.4
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeC-CCCCHHHHHHHHHHHhcCCCC-Cc-cchHHHHHHHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVS-EDFDVLSISRAILESITYSSC-DL-KALNEVQVQLKKA 285 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~il~~l~~~~~-~~-~~~~~~~~~l~~~ 285 (1175)
-+++.++|.-|.|||.+.++....... +.++=|.++ +..+...+...++..+..+.. .. ...++..+.+...
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~-----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNE-----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCC-----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 369999999999999999955443211 112223333 445677788888888776321 11 1223333344333
Q ss_pred h-cCcc-EEEEEecCccCCcccHHHHhcccCCCCCC---cEEEEecCCh--------hhhhhcCCCCe-eeCCCCChhhh
Q 047556 286 V-DGKK-IFLVLDDVWNEDYGLWEDLKAPLMGAAPN---SKIVVTTRHS--------HVASTMEPIQQ-YNLRCLSDEDC 351 (1175)
Q Consensus 286 l-~~~r-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~iivTtr~~--------~v~~~~~~~~~-~~l~~L~~~e~ 351 (1175)
. +++| ..+++||+.....+..+.++....-...+ -+|+..-..+ .....-.-... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 5677 99999999766556666554432211111 1233332211 11111011223 89999999999
Q ss_pred HHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHH
Q 047556 352 WSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALG 393 (1175)
Q Consensus 352 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1175)
..++..+..+.... .+-...+....|.....|.|.+|..++
T Consensus 206 ~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 206 GLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHH
Confidence 88888776544321 222223445678999999999998765
No 161
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00042 Score=84.58 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=87.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.++||+.++.++++.|..... .-+.++|++|+|||++|+.++....... ...++.+|.. ++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~---- 251 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG---- 251 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----
Confidence 589999999999998877432 2346899999999999999986431111 0123444421 111
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHHHh-cCccEEEEEecCccC--------CcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 260 AILESITYSSCDLKALNEVQVQLKKAV-DGKKIFLVLDDVWNE--------DYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 260 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
.++. .. ....+.+.....+.+.+ +..+.+|++|++..- ...+...+..++...+ .-+||-+|...+
T Consensus 252 ~lla---G~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E 326 (758)
T PRK11034 252 SLLA---GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQE 326 (758)
T ss_pred HHhc---cc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHH
Confidence 1111 00 01112222322332223 346789999999531 1112222333333322 345555555444
Q ss_pred hhhh-------cCCCCeeeCCCCChhhhHHHHHhhh
Q 047556 331 VAST-------MEPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 331 v~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
.... ..-...+.++..+.+++.+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3211 1233578999999999999887543
No 162
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.0054 Score=73.11 Aligned_cols=191 Identities=16% Similarity=0.156 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++.+...+.... -...+.++|+.|+||||+|+.+.+..-... ..+ ..+++.-..-+.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~-~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLN-PPD-------GEPCNECEICKAI 82 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCccHHHHHH
Confidence 468999999999999987642 236778899999999999999876422110 000 0111111111111
Q ss_pred HHHhcCCC-----CCccchHH---HHHHHHH-HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE-ecCChhh
Q 047556 262 LESITYSS-----CDLKALNE---VQVQLKK-AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV-TTRHSHV 331 (1175)
Q Consensus 262 l~~l~~~~-----~~~~~~~~---~~~~l~~-~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 331 (1175)
......+. ......++ +...+.. -..+++-++|+|++..-....+..+...+........+|+ ||....+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 11111000 00011222 1122111 1245677899999976555667777776655444555454 4444333
Q ss_pred hhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 332 ASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 332 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
...+ .....+.+.+++.++..+.+...+...+... ..+....|++.++|.+.-+
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 3221 2235788899999998888877654322111 1234567888888877543
No 163
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.34 E-value=0.0011 Score=65.30 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=61.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
.++||-++.++.+.-.-.+ +..+-+.|.||+|+||||-+..+++..-... +-+.+.=.++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNA------------- 86 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNA------------- 86 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccC-------------
Confidence 4689999988887766554 4557789999999999998888776432211 1112222222
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHh-------cCccEEEEEecCccCCcccHHHHh
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAV-------DGKKIFLVLDDVWNEDYGLWEDLK 310 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l-------~~~r~LlVlDdv~~~~~~~~~~l~ 310 (1175)
.+...++.+..+++.+- .++.-++|||.+++....+-..++
T Consensus 87 --------SdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlR 134 (333)
T KOG0991|consen 87 --------SDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALR 134 (333)
T ss_pred --------ccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHH
Confidence 23334444445554332 245568899999765444444443
No 164
>PRK08116 hypothetical protein; Validated
Probab=97.33 E-value=0.00089 Score=71.77 Aligned_cols=104 Identities=21% Similarity=0.173 Sum_probs=60.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.++|.+|+|||+||.++++..... ...+++++ ..+++..+........ ..... .+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCC
Confidence 458999999999999999999975332 22355665 3345555554443211 11111 233334444
Q ss_pred cEEEEEecCccCCcccHHH--HhcccCC-CCCCcEEEEecCCh
Q 047556 290 KIFLVLDDVWNEDYGLWED--LKAPLMG-AAPNSKIVVTTRHS 329 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 329 (1175)
. ||||||+..+...+|.. +...+.. ...+..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4 89999996544455543 2222221 12456799999744
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.29 E-value=0.0022 Score=80.94 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=84.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
..++||+.++.+++..|..... .-+.++|++|+|||++|+.++....... .-....+|.. ++..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH-
Confidence 3589999999999999976432 3456899999999999999887532110 0012223321 11111
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHh-c-CccEEEEEecCccCC-----c--ccHHHHhcccCCCCCCcEEEEecCCh
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAV-D-GKKIFLVLDDVWNED-----Y--GLWEDLKAPLMGAAPNSKIVVTTRHS 329 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlVlDdv~~~~-----~--~~~~~l~~~l~~~~~gs~iivTtr~~ 329 (1175)
+. ... ...+.+.....+.+.+ + +++.+|++|++..-. . .+...+..+....+ .-++|-+|...
T Consensus 241 ---~a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~ 312 (852)
T TIGR03346 241 ---IA---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLD 312 (852)
T ss_pred ---hh---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHH
Confidence 10 000 0112222222222222 2 468999999995311 0 01122222222222 24555555544
Q ss_pred hhhhh-------cCCCCeeeCCCCChhhhHHHHHhh
Q 047556 330 HVAST-------MEPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 330 ~v~~~-------~~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
+.... ..-...+.+...+.++..+++...
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 43211 123356888989999998888654
No 166
>PRK10536 hypothetical protein; Provisional
Probab=97.28 E-value=0.0039 Score=64.53 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=75.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEE--e--CC-----CC
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVC--V--SE-----DF 252 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~--~--s~-----~~ 252 (1175)
..+.+|......+..++... .+|.+.|+.|+|||+||.++..+.-..+ .|+.++-+. + +. +-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCC
Confidence 34677888888888888542 4899999999999999999887532223 454443321 1 10 00
Q ss_pred CHH----HHHHHHHHHhcCCCCCccchHHHHH--------HHHHHhcCccE---EEEEecCccCCcccHHHHhcccCCCC
Q 047556 253 DVL----SISRAILESITYSSCDLKALNEVQV--------QLKKAVDGKKI---FLVLDDVWNEDYGLWEDLKAPLMGAA 317 (1175)
Q Consensus 253 ~~~----~~~~~il~~l~~~~~~~~~~~~~~~--------~l~~~l~~~r~---LlVlDdv~~~~~~~~~~l~~~l~~~~ 317 (1175)
+.. ..++-+...+..-.. ....+.... .-..+++++.+ +||+|++.+-+..+ +...+...+
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~---~k~~ltR~g 201 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQ---MKMFLTRLG 201 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHH---HHHHHhhcC
Confidence 111 112222222211000 001111100 01235667655 99999997655533 344444556
Q ss_pred CCcEEEEecCChhh
Q 047556 318 PNSKIVVTTRHSHV 331 (1175)
Q Consensus 318 ~gs~iivTtr~~~v 331 (1175)
.+|+||+|--..++
T Consensus 202 ~~sk~v~~GD~~Qi 215 (262)
T PRK10536 202 ENVTVIVNGDITQC 215 (262)
T ss_pred CCCEEEEeCChhhc
Confidence 89999998765443
No 167
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=2.2e-05 Score=79.85 Aligned_cols=133 Identities=17% Similarity=0.289 Sum_probs=68.5
Q ss_pred CCccEEEEccCcccccCc--cccCCCCcccEEEeeCCCCCCCCCCC---CCCCCcceEEEeccCccchhhhhhhccCCCC
Q 047556 974 ITISSVRIWSCEKLEALP--NDLHKLNSLEHLYLQRCPSIVRFPEE---GFPNNLVELKIRGVDVKMYKAAIQWGLHRLT 1048 (1175)
Q Consensus 974 ~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~ 1048 (1175)
.+|..|+++.|..++.-. --+.+|+.|.+|+|+.|...+..-.. ..-++|+.|+++|..-+-....+..-...+
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc- 312 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC- 312 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC-
Confidence 467777777777766432 23567888888888888333221100 112344444444332221111111111223
Q ss_pred CCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCc--CCCCCCCCC
Q 047556 1049 SLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKS--FPEVGLPSS 1126 (1175)
Q Consensus 1049 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~--lp~~~~~~s 1126 (1175)
++|.+||+++|..++.-....|..++.|++|.++.|-.+.. +-+....++
T Consensus 313 ----------------------------p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 313 ----------------------------PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS 364 (419)
T ss_pred ----------------------------CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc
Confidence 45555666655555542223445667777777777754421 111223467
Q ss_pred cceeeeccC
Q 047556 1127 ILWLNIWSC 1135 (1175)
Q Consensus 1127 L~~L~i~~c 1135 (1175)
|.+|++.||
T Consensus 365 l~yLdv~g~ 373 (419)
T KOG2120|consen 365 LVYLDVFGC 373 (419)
T ss_pred eEEEEeccc
Confidence 888888877
No 168
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.27 E-value=0.0014 Score=74.56 Aligned_cols=158 Identities=19% Similarity=0.197 Sum_probs=87.6
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS-------GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
.++.|.+..++++.+.+.-.-.. +-...+-+.++|++|+|||++|+++++.... .| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~---~f---i~V~~se---- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA---TF---LRVVGSE---- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---CE---EEEecch----
Confidence 35789999998888876421100 1123456889999999999999999985432 33 1121111
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC--------Ccc--c----HHHHhcccCC--CCC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE--------DYG--L----WEDLKAPLMG--AAP 318 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--------~~~--~----~~~l~~~l~~--~~~ 318 (1175)
+. ..... .....+...+.....+.+.+|+||+++.- ... . ...+...+.. ...
T Consensus 253 --L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 --LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred --hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 11 11100 01111122222233467889999997421 000 0 1112222221 124
Q ss_pred CcEEEEecCChhhhhh-c----CCCCeeeCCCCChhhhHHHHHhhhc
Q 047556 319 NSKIVVTTRHSHVAST-M----EPIQQYNLRCLSDEDCWSLFMMHAF 360 (1175)
Q Consensus 319 gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~ 360 (1175)
+.+||+||...+.... + .-...+.+...+.++..++|..+..
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 5678888876554432 1 1345788999999999999987653
No 169
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.23 E-value=2e-05 Score=89.68 Aligned_cols=95 Identities=27% Similarity=0.261 Sum_probs=59.5
Q ss_pred cccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCcc-CCCCCCccccCce
Q 047556 626 HLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFG-MKELKNLQALSNF 704 (1175)
Q Consensus 626 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~ 704 (1175)
.|.+.+.++|.+..+-+++.-++.|+.|||++| ++...- .+..|++|+||||++|. +..+|.- ...+ .|+.|.+.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeec
Confidence 355666667777777777777778888888887 454443 57777788888888777 5555532 2222 26666555
Q ss_pred eeccCCCccCccccccccccc
Q 047556 705 IVGTGTRSSGLKDLKSLTFLS 725 (1175)
Q Consensus 705 ~~~~~~~~~~l~~l~~L~~L~ 725 (1175)
+|...... ++.+|++|..|+
T Consensus 241 nN~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccc
Confidence 55444333 555666666555
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0074 Score=65.87 Aligned_cols=95 Identities=12% Similarity=0.199 Sum_probs=63.7
Q ss_pred CccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC-hhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCC
Q 047556 288 GKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-SHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDL 365 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 365 (1175)
+++-++|+|+++.-....-..+...+..-..++.+|++|.. ..+...+ .-...+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 56779999999765556666777777665567766666654 3343322 233678899999999988886532
Q ss_pred CcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 366 TAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
.. ...+..++..++|.|+....+
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 112456899999999866543
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.22 E-value=0.0049 Score=69.86 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=86.6
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANS-------PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
.++.|.+..++++.+.+...- .-|-...+-+.++|++|+|||++|+++++.... .| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---~f---i~i~~------ 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---TF---IRVVG------ 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE---EEEeh------
Confidence 458899988888887654210 001134567899999999999999999985332 22 12211
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC-------C---ccc----HHHHhcccCC--CCC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE-------D---YGL----WEDLKAPLMG--AAP 318 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-------~---~~~----~~~l~~~l~~--~~~ 318 (1175)
..+ ...... .....+...+.......+.+|++|+++.- . ... +..+...+.. ...
T Consensus 213 s~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 111100 01111222222333467899999998531 0 001 1122222222 224
Q ss_pred CcEEEEecCChhhhhh--c---CCCCeeeCCCCChhhhHHHHHhhh
Q 047556 319 NSKIVVTTRHSHVAST--M---EPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 319 gs~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
+..||+||...+.... . .-...+.+...+.++..++|..+.
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 5678888876554321 1 234568888888888888887654
No 172
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.20 E-value=0.0048 Score=71.43 Aligned_cols=168 Identities=13% Similarity=0.099 Sum_probs=90.8
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHhccccccc--cccceEEEEEeCCCC
Q 047556 182 RTVFGRHQDKAKILEMVSANSP-------SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET--FKFDIKAWVCVSEDF 252 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~ 252 (1175)
..+.|.+..++++.+.+...-. -+-...+-+.++|++|+|||++|+++++...... .......|+.+....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 3577899999988887642100 0112345689999999999999999998643211 011233455444321
Q ss_pred CHHHHHHHHHHHhcCCCCCccchHHHHHHHHHH-hcCccEEEEEecCccCC-------cccH-----HHHhcccCCC--C
Q 047556 253 DVLSISRAILESITYSSCDLKALNEVQVQLKKA-VDGKKIFLVLDDVWNED-------YGLW-----EDLKAPLMGA--A 317 (1175)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~--~ 317 (1175)
++...... .......+....++. -.+++++|+||+++.-- .... ..+...+... .
T Consensus 262 --------Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 262 --------LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred --------hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11110000 001111222222222 23578999999996310 0111 2233333222 1
Q ss_pred CCcEEEEecCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhh
Q 047556 318 PNSKIVVTTRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 318 ~gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
.+..||.||...+... .+ .-+..+++...+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3455666776554332 11 123568999999999999998876
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.0015 Score=63.26 Aligned_cols=87 Identities=20% Similarity=0.048 Sum_probs=46.3
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.|+|++|+||||+|+.++...... ...++++..+........... ........ ...........+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEVLDQLL-LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccCHHHHH-hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999864321 123555555443322222111 11111111 1111222222333333333
Q ss_pred -cEEEEEecCccC
Q 047556 290 -KIFLVLDDVWNE 301 (1175)
Q Consensus 290 -r~LlVlDdv~~~ 301 (1175)
..+|++|+++..
T Consensus 78 ~~~viiiDei~~~ 90 (148)
T smart00382 78 KPDVLILDEITSL 90 (148)
T ss_pred CCCEEEEECCccc
Confidence 499999999653
No 174
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.14 E-value=2.7e-05 Score=88.62 Aligned_cols=109 Identities=25% Similarity=0.235 Sum_probs=61.4
Q ss_pred HHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCchhhhcc
Q 047556 593 FSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPSKMRKL 671 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L 671 (1175)
...++.-++.|+.|+|++|.+++.. .+..+.+|+.|||++|.+..+|.- ...++ |+.|.|++| .++.+- ++.+|
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~-gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLR-GIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhh-hHHhh
Confidence 4455556666677777777666654 566666777777777766666542 22333 666777666 455553 36666
Q ss_pred CCCceeeecCccccccCC-ccCCCCCCccccCceee
Q 047556 672 INLRHLDITGAYLIKEMP-FGMKELKNLQALSNFIV 706 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~ 706 (1175)
.+|+.||+++|-+.+.-- ..++.|..|..|.+-+|
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 677777776665322110 11334445555544433
No 175
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.13 E-value=0.016 Score=71.75 Aligned_cols=166 Identities=16% Similarity=0.232 Sum_probs=85.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
+...+|.++.+++|.+++......+.....++.++|++|+||||+|+.++..... .| +-++++...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~---~~---~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR---KY---VRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC---CE---EEEEcCCCCCHHHhccc
Confidence 3458999999999998887422111123468999999999999999999974321 22 22334443333322211
Q ss_pred HHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCccc----HHHHhcccCCC---------------CCCcE
Q 047556 261 ILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGL----WEDLKAPLMGA---------------APNSK 321 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~ 321 (1175)
-....+ .........+.+. ....-+++||.++.-..+. .+.+...+.+. -.+.-
T Consensus 395 ~~~~~g------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 RRTYIG------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hhccCC------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 111111 1111222333322 2233478899985432211 23333333221 12333
Q ss_pred EEEecCChhhhhhc-CCCCeeeCCCCChhhhHHHHHhhh
Q 047556 322 IVVTTRHSHVASTM-EPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 322 iivTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
+|.|+....+.... .-..++.+.+++++|-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44455433222111 122567788888888777666554
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.11 E-value=0.0014 Score=82.20 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++||+.++.++++.|..... .-+.++|.+|+|||++|+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~------~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc------CceEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999976432 346699999999999999988753
No 177
>PRK08118 topology modulation protein; Reviewed
Probab=97.09 E-value=0.00026 Score=70.02 Aligned_cols=35 Identities=34% Similarity=0.625 Sum_probs=28.9
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEE
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAW 245 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 245 (1175)
-|.|+|++|+||||||+.+++.......+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999876554336777776
No 178
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.019 Score=62.87 Aligned_cols=176 Identities=12% Similarity=0.082 Sum_probs=98.9
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccc---e-----EEEEEeCCCCCHHHHHHHH
Q 047556 190 DKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFD---I-----KAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 190 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~-----~~wv~~s~~~~~~~~~~~i 261 (1175)
.-+.+...+..+ .-.....+.|+.|+||+++|+++++-.--.. ... | .-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~-~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQT-PQGDQPCGQCHSCHLFQAGNHPDFHIL---- 79 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHhcCCCCCEEEE----
Confidence 344566666543 2235788999999999999998876431111 000 0 000001111111100
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh-hhhhhc
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-HVASTM 335 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~ 335 (1175)
.......-..++.. .+.+.+ .+++-++|+|+++.-.......+...+.....++.+|++|.+. .+....
T Consensus 80 ----~p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 80 ----EPIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred ----ccccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH
Confidence 00000011222222 222222 3667789999997766677888888887666677777766654 444332
Q ss_pred -CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 336 -EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 336 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
.-...+.+.++++++..+.+...... ... .+...+..++|.|..+
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~~~-----~~~----~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQSSA-----EIS----EILTALRINYGRPLLA 200 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHhcc-----ChH----HHHHHHHHcCCCHHHH
Confidence 23468999999999999888765411 111 2445778899999643
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.06 E-value=0.0052 Score=60.42 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=72.4
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccc-----------------ccceEEEEEe
Q 047556 186 GRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETF-----------------KFDIKAWVCV 248 (1175)
Q Consensus 186 gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~~ 248 (1175)
|-++..+.+.+.+... .-...+.++|+.|+||+++|..+++..-.... ...-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4456677777777654 23357899999999999999888764321110 1112222222
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE
Q 047556 249 SEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV 323 (1175)
Q Consensus 249 s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1175)
.... ..-..++.. .+.+.+ .+++-++|+||++.-..+.+..+...+.....++.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 1110 011222222 333322 3467799999998877788889988887777889988
Q ss_pred EecCChh
Q 047556 324 VTTRHSH 330 (1175)
Q Consensus 324 vTtr~~~ 330 (1175)
++|++..
T Consensus 137 L~t~~~~ 143 (162)
T PF13177_consen 137 LITNNPS 143 (162)
T ss_dssp EEES-GG
T ss_pred EEECChH
Confidence 8888764
No 180
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.06 E-value=0.055 Score=60.08 Aligned_cols=209 Identities=13% Similarity=0.178 Sum_probs=123.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHH-HHHhccccccccccceEEEEEeCCC---CCHHHHHHHHH
Q 047556 187 RHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLA-REVYNDKEVETFKFDIKAWVCVSED---FDVLSISRAIL 262 (1175)
Q Consensus 187 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~il 262 (1175)
|.+..++|..||..... ..|.|.|+-|.||+.|+ .++..+. +.+..+++.+- .+-..+++.++
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHH
Confidence 66788999999987543 68999999999999999 7777642 22556655322 23445555556
Q ss_pred HHhcCCC-----------------------CC-ccchH-HHHH-------HHHH-------------------Hhc---C
Q 047556 263 ESITYSS-----------------------CD-LKALN-EVQV-------QLKK-------------------AVD---G 288 (1175)
Q Consensus 263 ~~l~~~~-----------------------~~-~~~~~-~~~~-------~l~~-------------------~l~---~ 288 (1175)
.++|.-. .. ..+.+ ++.. .|++ ++. .
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 5554421 00 01111 1111 1221 110 1
Q ss_pred ccEEEEEecCccCC---cccHHHHhc---ccCCCCCCcEEEEecCChhhhhhcC------CCCeeeCCCCChhhhHHHHH
Q 047556 289 KKIFLVLDDVWNED---YGLWEDLKA---PLMGAAPNSKIVVTTRHSHVASTME------PIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~---~~~~~~l~~---~l~~~~~gs~iivTtr~~~v~~~~~------~~~~~~l~~L~~~e~~~lf~ 356 (1175)
+|=+||+|+.-... .-.|+.+.. .+.. .+--+||++|-+......+. ..+.+.+...+.+.|.++..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 26689999974321 112233222 1222 24457888888765544322 44678899999999999998
Q ss_pred hhhccCCCC------------Ccc----hhHHHHHHHHHHhcCCchHHHHHHHHHhcCC-CH-HHHHHHHh
Q 047556 357 MHAFVSRDL------------TAQ----QISDLFRDKVVGKCRGLPLAAKALGGLLRSK-RH-DAWDEILN 409 (1175)
Q Consensus 357 ~~~~~~~~~------------~~~----~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~-~~w~~~~~ 409 (1175)
.+....... ... .....-....++..||==.=+..+++.++.. ++ +.-+++.+
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 877443110 000 1122234568889999999999999999887 43 33444443
No 181
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.05 E-value=0.0034 Score=78.06 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=69.0
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.++|.+..++.+.+.+..... .......++.++|+.|+|||+||+.++... +...+.++.+...+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhccc---
Confidence 478888888888887764321 010234578999999999999999998743 22345555544322111
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHHHhcC-ccEEEEEecCccCCcccHHHHhcccCC
Q 047556 260 AILESITYSSCDLKALNEVQVQLKKAVDG-KKIFLVLDDVWNEDYGLWEDLKAPLMG 315 (1175)
Q Consensus 260 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~~~~~~~l~~~l~~ 315 (1175)
+...++.+... ...+ ....+.+.++. ..-+++||+++....+.+..+...+..
T Consensus 526 -~~~lig~~~gy-vg~~-~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGY-VGFE-QGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCC-cccc-hhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11122222110 0011 11123333333 345999999987777777777665543
No 182
>CHL00176 ftsH cell division protein; Validated
Probab=97.01 E-value=0.018 Score=69.25 Aligned_cols=177 Identities=18% Similarity=0.247 Sum_probs=95.0
Q ss_pred CccccchhhHHHHHHH---HhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEM---VSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~---l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.+++|.++.++++.+. +..... -+....+-|.++|++|+|||++|++++..... . |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~---p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV---P-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C-----eeeccHH----
Confidence 4578887766655554 332211 01123456899999999999999999875322 1 2222211
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC----------CcccHHH----HhcccCC--CCCC
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE----------DYGLWED----LKAPLMG--AAPN 319 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~----------~~~~~~~----l~~~l~~--~~~g 319 (1175)
.+.. .. .+ .....+...+.+.....+.+|++||++.- ....++. +...+.. ...+
T Consensus 251 ~f~~-~~--~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVE-MF--VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHH-Hh--hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 1110 00 00 01122233344445678899999999531 0112222 2222221 2345
Q ss_pred cEEEEecCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC
Q 047556 320 SKIVVTTRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG 384 (1175)
Q Consensus 320 s~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 384 (1175)
..||.||...+... .+ .-...+.+...+.++-.+++..++..... .. ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 56777776654332 11 13367888888888888888877643111 11 1123567777777
No 183
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.021 Score=60.91 Aligned_cols=200 Identities=16% Similarity=0.200 Sum_probs=109.3
Q ss_pred ccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPS-------GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.+=|-++.+++|.+...-+-.+ |-..++=|.++|++|.|||-||++|+++-.. .| +.+..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---tF-----IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA---TF-----IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc---eE-----EEeccH----
Confidence 3557888888888876432111 1245567899999999999999999985332 33 333321
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHh-cCccEEEEEecCccC--------Cc------ccHHHHhcccCCCC--C
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAV-DGKKIFLVLDDVWNE--------DY------GLWEDLKAPLMGAA--P 318 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~--------~~------~~~~~l~~~l~~~~--~ 318 (1175)
++.+..-+. -..+.+.+.+.- ...+..|++|.++.. .. -..-++...+..+. .
T Consensus 220 ----ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ----ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ----HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 222222111 123334444433 356899999988531 00 11223444454443 4
Q ss_pred CcEEEEecCChhhhhh--c---CCCCeeeCCCCChhhh-HHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch----HH
Q 047556 319 NSKIVVTTRHSHVAST--M---EPIQQYNLRCLSDEDC-WSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP----LA 388 (1175)
Q Consensus 319 gs~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~-~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----la 388 (1175)
..|||.+|...++..- + .-++.+++. |.+.++ .+.|.-++.. -....+-.++ .+++.|.|.- -|
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtrk-M~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTRK-MNLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhhh-ccCccCcCHH----HHHHhcCCCchHHHHH
Confidence 5799999987766542 1 234667777 555554 4566655522 1222333343 4666666644 34
Q ss_pred HHHHHHHhcCC------CHHHHHHHHhh
Q 047556 389 AKALGGLLRSK------RHDAWDEILNS 410 (1175)
Q Consensus 389 i~~~~~~l~~~------~~~~w~~~~~~ 410 (1175)
+-+=|++++-+ +.+++..+.++
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 44545555322 55666655543
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.00 E-value=0.00057 Score=82.68 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=84.6
Q ss_pred hhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccc
Q 047556 557 MHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTW 636 (1175)
Q Consensus 557 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~ 636 (1175)
-.-++.||+|.+.+... ....+...+.++++|+.||+|+++++.+ ..++.|++|+.|.+++-.
T Consensus 144 g~~LPsL~sL~i~~~~~---------------~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQF---------------DNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLE 206 (699)
T ss_pred hhhCcccceEEecCcee---------------cchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCC
Confidence 34688999998766431 1223667788999999999999999988 479999999999999887
Q ss_pred ccccc--ccccCcccccEEeccCccccccCchh-------hhccCCCceeeecCccccc
Q 047556 637 IRNLP--KSTCSLINLQILLLRGCYYLLKLPSK-------MRKLINLRHLDITGAYLIK 686 (1175)
Q Consensus 637 i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~~~~ 686 (1175)
+..-+ ..+.+|++|++||+|....... +.. -..|++||.||.+++.+..
T Consensus 207 ~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 207 FESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhH
Confidence 76432 3578899999999998643322 221 1248899999999887443
No 185
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.98 E-value=0.016 Score=62.20 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=29.3
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
+-|.++|++|+|||++|+++++.. . ...+++++....+..+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l--g----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR--D----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh--C----CCEEEEeCCccCCHHHHh
Confidence 356799999999999999998632 1 123556666555554443
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.031 Score=61.05 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=65.0
Q ss_pred CccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh-hhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCC
Q 047556 288 GKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-HVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDL 365 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 365 (1175)
+.+-++|+|++..-.......+...+.....++.+|++|.+. .+.... .-...+.+.+++++++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----
Confidence 456789999997766677888888887666677766665544 444332 2346889999999999988865421
Q ss_pred CcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 366 TAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
. .+..+++.++|.|+....+
T Consensus 182 -~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 -T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -c------hHHHHHHHcCCCHHHHHHH
Confidence 1 1245788999999876544
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.01 Score=65.98 Aligned_cols=163 Identities=11% Similarity=0.057 Sum_probs=89.4
Q ss_pred cccc-chhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 183 TVFG-RHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 183 ~~vg-r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
.++| -+..++.+...+..+ .-.....++|+.|+||||+|+.+.+..-... ..... .+..-..-+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~-~~~~~-------~cg~C~~c~~~ 72 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLE-RNGVE-------PCGTCTNCKRI 72 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCC-------CCCcCHHHHHH
Confidence 4566 566677777777653 2346779999999999999988866421110 00000 00000000000
Q ss_pred HHHhcCC------CCCccchHHHHHHHHH----HhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-
Q 047556 262 LESITYS------SCDLKALNEVQVQLKK----AVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH- 330 (1175)
Q Consensus 262 l~~l~~~------~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~- 330 (1175)
...-..+ .......++....+.. -..+.+-++|+|++..-.......+...+.....++.+|++|.+..
T Consensus 73 ~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 73 DSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 0000000 0000112222222111 1235566899999976666667778887876666777776666543
Q ss_pred hhhhc-CCCCeeeCCCCChhhhHHHHHhh
Q 047556 331 VASTM-EPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
+.... .-...+++.+++.++..+.+...
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 33222 23468999999999988887653
No 188
>PRK07261 topology modulation protein; Provisional
Probab=96.92 E-value=0.0023 Score=63.68 Aligned_cols=35 Identities=31% Similarity=0.535 Sum_probs=25.3
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEE
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAW 245 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 245 (1175)
.|.|+|++|+||||||+++........-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999998754332224455555
No 189
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.90 E-value=0.0036 Score=68.31 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=71.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHh
Q 047556 186 GRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESI 265 (1175)
Q Consensus 186 gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l 265 (1175)
+|....+...+++..-.. + ...+-+.++|..|+|||.||.++++....+ .+ .+.+++++ .++.++....
T Consensus 135 ~~~~~~~~~~~fi~~~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~-~v~~~~~~------~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKK--GV-SSTLLHFP------EFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CC-CEEEEEHH------HHHHHHHHHH
Confidence 454555555555543221 1 233568999999999999999999875432 22 34556543 4555555444
Q ss_pred cCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHH--Hhccc-CCC-CCCcEEEEecCC
Q 047556 266 TYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWED--LKAPL-MGA-APNSKIVVTTRH 328 (1175)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 328 (1175)
... +..+ .+.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||.-
T Consensus 204 ~~~-----~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 204 SDG-----SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hcC-----cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 211 1222 2222 2 345689999997766677764 44433 222 245678888873
No 190
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.0039 Score=65.30 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=57.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.++|.+|+|||+||.++++.....+ ..+++++ ..+++..+-..... .....+ .+.+.+. +
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 4789999999999999999998653322 3445554 34444444433321 111111 2333344 3
Q ss_pred cEEEEEecCccCCcccHHH--HhcccCCC-CCCcEEEEecCC
Q 047556 290 KIFLVLDDVWNEDYGLWED--LKAPLMGA-APNSKIVVTTRH 328 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 328 (1175)
.=+||+||+.......|+. +..-+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4588889997665566664 22222111 123457888763
No 191
>PRK08181 transposase; Validated
Probab=96.86 E-value=0.0022 Score=68.19 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=55.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
.-+.++|++|+|||.||.++.+..... ...++|+++ .+++..+..... ....+.... .+ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~----~l-~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFTRT------TDLVQKLQVARR-----ELQLESAIA----KL-DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHH----HH-hc
Confidence 458999999999999999998754221 223455543 344444433211 112222222 22 23
Q ss_pred cEEEEEecCccCCcccHH--HHhcccCCCCCCcEEEEecCCh
Q 047556 290 KIFLVLDDVWNEDYGLWE--DLKAPLMGAAPNSKIVVTTRHS 329 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 329 (1175)
.-|||+||+.......|. .+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 459999999544333332 2333332222234688888754
No 192
>PRK06526 transposase; Provisional
Probab=96.85 E-value=0.0016 Score=68.94 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=52.4
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
.-+.++|++|+|||+||.++.......+ + .+.|+ +..+++..+..... ... ....+.+. .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g--~-~v~f~------t~~~l~~~l~~~~~-----~~~---~~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAG--H-RVLFA------TAAQWVARLAAAHH-----AGR---LQAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCC--C-chhhh------hHHHHHHHHHHHHh-----cCc---HHHHHHHh--cc
Confidence 4589999999999999999987543222 2 22332 23344444433211 011 11223322 24
Q ss_pred cEEEEEecCccCCcccHH--HHhcccCCC-CCCcEEEEecCCh
Q 047556 290 KIFLVLDDVWNEDYGLWE--DLKAPLMGA-APNSKIVVTTRHS 329 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 329 (1175)
.-+||+||+.......|. .+...+... ..+ .+||||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 568999999643322222 222222211 123 488888754
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.0021 Score=66.26 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=28.3
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEe
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCV 248 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 248 (1175)
-.++|+|..|.|||||+..+...... .|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~---~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH---KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc---cCCEEEEEec
Confidence 35789999999999999999876332 6877777654
No 194
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.81 E-value=0.014 Score=58.36 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=70.9
Q ss_pred CCccccchhhHHHHHHHH---hcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHH
Q 047556 181 ERTVFGRHQDKAKILEMV---SANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSI 257 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l---~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 257 (1175)
-..++|-+...+.+++-- ..+ ..---|.+||.-|+||++|++++.+....++ -. -|-|.+
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G-----~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g---lr--LVEV~k------- 121 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEG-----LPANNVLLWGARGTGKSSLVKALLNEYADEG---LR--LVEVDK------- 121 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcC-----CcccceEEecCCCCChHHHHHHHHHHHHhcC---Ce--EEEEcH-------
Confidence 346899999888887732 222 1224578999999999999999998754433 11 222221
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCcc-CCcccHHHHhcccCCC---CCCcEEEEecCCh
Q 047556 258 SRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWN-EDYGLWEDLKAPLMGA---APNSKIVVTTRHS 329 (1175)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtr~~ 329 (1175)
.+..++..+...++. ...||+|..||.-- +..+.+..+...+..+ .+.-.++..|.++
T Consensus 122 ------------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 122 ------------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 112223333333332 46899999999843 3345677777766543 2333455555543
No 195
>PRK12377 putative replication protein; Provisional
Probab=96.80 E-value=0.002 Score=67.64 Aligned_cols=101 Identities=20% Similarity=0.125 Sum_probs=56.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.++|.+|+|||+||.++++..... ...++++++. +++..+-...... ..... +.+.+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~----~l~~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVP------DVMSRLHESYDNG----QSGEK----FLQEL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHH------HHHHHHHHHHhcc----chHHH----HHHHh-cC
Confidence 578999999999999999999865432 2334666543 3444443333211 11111 22222 45
Q ss_pred cEEEEEecCccCCcccHHH--HhcccCCC-CCCcEEEEecCC
Q 047556 290 KIFLVLDDVWNEDYGLWED--LKAPLMGA-APNSKIVVTTRH 328 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 328 (1175)
--|||+||+.......|.. +...+... ...-.+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6799999995544445543 22222222 123457888763
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.031 Score=61.92 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=98.1
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccc--ccceE-----EEEEeCCCCCHHHHHHHHH
Q 047556 190 DKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETF--KFDIK-----AWVCVSEDFDVLSISRAIL 262 (1175)
Q Consensus 190 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~f~~~-----~wv~~s~~~~~~~~~~~il 262 (1175)
.-+++...+..+ .-.....+.|+.|+||+++|.+++.-.--... .-.|- -++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 445666666553 23467889999999999999887653211100 00000 00001111111100
Q ss_pred HHhcCCCC-CccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC-hhhhhhc
Q 047556 263 ESITYSSC-DLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-SHVASTM 335 (1175)
Q Consensus 263 ~~l~~~~~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~ 335 (1175)
..... ..-..++.. .+.+.+ .+++-++|+|+++.-.......+...+..-..++.+|.+|.+ ..+....
T Consensus 80 ---~p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ---ecccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00000 011222222 222222 367779999999776666777888888766667766666655 4444332
Q ss_pred -CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 336 -EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 336 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
.-...+.+.+++++++.+.+..... .+ .+.+..++..++|.|...
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~~------~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREVT------MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHccC------CC---HHHHHHHHHHcCCCHHHH
Confidence 2335788999999999887765321 11 112457889999999644
No 197
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0001 Score=74.37 Aligned_cols=104 Identities=22% Similarity=0.196 Sum_probs=70.0
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCch--hhhccCCCce
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPS--KMRKLINLRH 676 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~ 676 (1175)
.+.+.+.|++-||.+.++. .+.+++.|++|.|+-|.|++| ..+..+++|+.|.|+.| .+..+-+ .+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 3556677777788777764 566778888888888888777 34677788888888877 5555533 2567788888
Q ss_pred eeecCccccccCCcc-----CCCCCCccccCceee
Q 047556 677 LDITGAYLIKEMPFG-----MKELKNLQALSNFIV 706 (1175)
Q Consensus 677 L~l~~~~~~~~~p~~-----~~~L~~L~~L~~~~~ 706 (1175)
|.|..|...+.-+.. +.-|++|+.|+...+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 888777655554433 445566666655444
No 198
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.77 E-value=0.04 Score=63.97 Aligned_cols=173 Identities=14% Similarity=0.098 Sum_probs=101.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccc---ccc--cccceEEEEEeCCCCCHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKE---VET--FKFDIKAWVCVSEDFDVLS 256 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~--~~f~~~~wv~~s~~~~~~~ 256 (1175)
..+-+|+.+..+|...+...-.. +.....+-|.|-+|+|||..+..|.+..+ .++ ..|+ .+.|+.-.-..+.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34678999999998887653322 12335899999999999999999988543 111 1232 24455555567999
Q ss_pred HHHHHHHHhcCCCCCccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCC-CCCCcEEEEecCC--
Q 047556 257 ISRAILESITYSSCDLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMG-AAPNSKIVVTTRH-- 328 (1175)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~-- 328 (1175)
++..|..++...... .......+..++ +.+..++++|+++.--...-+.+...|.| ..++||++|-+-.
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999999876532 122223333333 34678999998732100011233444443 4577886665421
Q ss_pred hhhhhh-cC-------CCCeeeCCCCChhhhHHHHHhhh
Q 047556 329 SHVAST-ME-------PIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 329 ~~v~~~-~~-------~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
-+..+. +. ....+...+-+.++-.+....+.
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 111110 00 23456666666666655555544
No 199
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.75 E-value=0.00036 Score=84.32 Aligned_cols=87 Identities=28% Similarity=0.290 Sum_probs=57.4
Q ss_pred HhhhcCCCccEEEecccccccCC-CCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCc--hhhhcc
Q 047556 595 NLLSKCRKLRVLSLSRSYITELP-KGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLP--SKMRKL 671 (1175)
Q Consensus 595 ~~~~~~~~Lr~L~Ls~~~i~~l~-~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L 671 (1175)
..-..+|+|+.|.+++-.+..-. .....++++|+.||+|+++|+.+ ..+++|++||+|.+++= .+..-+ ..+-.|
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLIDLFNL 219 (699)
T ss_pred HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHHHhcc
Confidence 34456788888888775543211 02345777888888888888877 67888888888887764 222211 235678
Q ss_pred CCCceeeecCcc
Q 047556 672 INLRHLDITGAY 683 (1175)
Q Consensus 672 ~~L~~L~l~~~~ 683 (1175)
++|++||+|...
T Consensus 220 ~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 220 KKLRVLDISRDK 231 (699)
T ss_pred cCCCeeeccccc
Confidence 888888887665
No 200
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.74 E-value=0.03 Score=66.58 Aligned_cols=178 Identities=17% Similarity=0.186 Sum_probs=92.1
Q ss_pred CccccchhhHHHHHHHHh---cCC---CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVS---ANS---PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~---~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.+++|.+..++++.+.+. ... ..+....+-+.++|++|+|||++|++++..... . ++.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~-----~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---P-----FFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---C-----eeeccH----H
Confidence 467888877666655443 110 001123345889999999999999999975332 2 222221 1
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC----------cccHHHH----hcccCC--CCCC
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED----------YGLWEDL----KAPLMG--AAPN 319 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------~~~~~~l----~~~l~~--~~~g 319 (1175)
.+. ..... .....+...+.......+.+|++||++.-. ...+... ...+.. ...+
T Consensus 123 ~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111 11100 011222233333334677899999994310 1112222 222211 2234
Q ss_pred cEEEEecCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 320 SKIVVTTRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 320 s~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
..||.||....... .+ .-...+.+...+.++-.++|..+...... ..... ...+++.+.|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 55666776554222 11 23457888888888888888776533221 11111 24677777763
No 201
>PRK06921 hypothetical protein; Provisional
Probab=96.72 E-value=0.0047 Score=66.13 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=54.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.++|..|+|||+||.++++....+ ....++|++. .+++..+...+ +.....+. .+ .+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~--~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~-~~-~~ 177 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRK--KGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLN-RM-KK 177 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhh--cCceEEEEEH------HHHHHHHHHHH----------HHHHHHHH-Hh-cC
Confidence 578999999999999999999864332 1234566664 22333332221 11111222 22 24
Q ss_pred cEEEEEecCcc-----CCcccHHH--HhcccCCC-CCCcEEEEecCC
Q 047556 290 KIFLVLDDVWN-----EDYGLWED--LKAPLMGA-APNSKIVVTTRH 328 (1175)
Q Consensus 290 r~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 328 (1175)
--||||||+.. +...+|.. +...+... ..+..+||||..
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 56999999932 22345543 33322221 134568888863
No 202
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.71 E-value=0.0013 Score=65.65 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=51.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
.-+.++|..|+|||.||.++.+....++ + .+.|+++ .+++..+ .... .....+... +.+. +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g--~-~v~f~~~------~~L~~~l----~~~~-~~~~~~~~~----~~l~-~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKG--Y-SVLFITA------SDLLDEL----KQSR-SDGSYEELL----KRLK-R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEH------HHHHHHH----HCCH-CCTTHCHHH----HHHH-T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCC--c-ceeEeec------Cceeccc----cccc-cccchhhhc----Cccc-c
Confidence 5699999999999999999987643322 2 3456653 3344333 2221 111222222 2233 2
Q ss_pred cEEEEEecCccCCcccHHH--HhcccCCCCCCcEEEEecCCh
Q 047556 290 KIFLVLDDVWNEDYGLWED--LKAPLMGAAPNSKIVVTTRHS 329 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~--l~~~l~~~~~gs~iivTtr~~ 329 (1175)
-=||||||+-......|.. +...+........+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 3578899996655555543 111111111123688888743
No 203
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.71 E-value=0.012 Score=74.00 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=74.4
Q ss_pred ccccchhhHHHHHHHHhcCCCC---CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPS---GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.++|.+..++.+...+.....+ ......++.++|+.|+|||++|+.+++..-. .-...+.++++..... .
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---~~~~~i~id~se~~~~-~--- 641 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---SDDAMVRIDMSEFMEK-H--- 641 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc---CCCcEEEEEhHHhhhh-h---
Confidence 5889999998888887643210 0022357889999999999999999864311 1122344444332111 1
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHHHhcC-ccEEEEEecCccCCcccHHHHhcccCCC----C-------CCcEEEEecC
Q 047556 260 AILESITYSSCDLKALNEVQVQLKKAVDG-KKIFLVLDDVWNEDYGLWEDLKAPLMGA----A-------PNSKIVVTTR 327 (1175)
Q Consensus 260 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivTtr 327 (1175)
....-+|.+. .-...+. ...+.+.++. ..-+|+||++.....+.+..+...+..+ + ..+-||+||.
T Consensus 642 ~~~~LiG~~p-gy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 642 SVSRLVGAPP-GYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hHHHHhCCCC-cccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 1111222221 1101111 1122233322 3369999999766667777776655432 1 2334777887
Q ss_pred C
Q 047556 328 H 328 (1175)
Q Consensus 328 ~ 328 (1175)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 204
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.71 E-value=0.019 Score=65.52 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=75.6
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKK 290 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r 290 (1175)
++.|.|+-++||||+++.+...... . .+++..........-+.+ ....+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~---~---~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE---E---IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc---c---eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCC
Confidence 9999999999999999777764221 1 455543322111111111 1111111112277
Q ss_pred EEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhhhhc------CCCCeeeCCCCChhhhHHHH
Q 047556 291 IFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTM------EPIQQYNLRCLSDEDCWSLF 355 (1175)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~------~~~~~~~l~~L~~~e~~~lf 355 (1175)
..|+||.|.. ...|+.....+.+.++. +|++|+-+..+...- +-...+.+-||+-.|...+-
T Consensus 96 ~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 8999999954 56899988888887766 899998876554321 23467889999998876543
No 205
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.70 E-value=0.012 Score=64.68 Aligned_cols=101 Identities=17% Similarity=0.245 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccce-EEEEEeCCC-CCHHHHHHHHHHHhcCC
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDI-KAWVCVSED-FDVLSISRAILESITYS 268 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~il~~l~~~ 268 (1175)
..++++.+..- .+..-+.|+|.+|+|||||++.+++..... +-+. ++|+.+.+. ..+.++.+.+...+...
T Consensus 120 ~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i~~~--~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 120 SMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN--HPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 34477776643 122456999999999999999988754322 2344 467777654 57788888888877654
Q ss_pred CCCccchHH-----HHHHHHHHh--cCccEEEEEecC
Q 047556 269 SCDLKALNE-----VQVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 269 ~~~~~~~~~-----~~~~l~~~l--~~~r~LlVlDdv 298 (1175)
..+...... ....+.+++ .+++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 322221111 111222222 589999999999
No 206
>PRK04296 thymidine kinase; Provisional
Probab=96.67 E-value=0.003 Score=64.08 Aligned_cols=114 Identities=12% Similarity=-0.020 Sum_probs=64.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCC--ccchHHHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCD--LKALNEVQVQLKKAVD 287 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~ 287 (1175)
.++.|+|..|.||||+|..++...... -..++.+ ...++.......++++++..... ....++....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 578999999999999998888754332 2223333 12222222334455666543322 2233444444444 33
Q ss_pred CccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhh
Q 047556 288 GKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHV 331 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 331 (1175)
++.-+||+|.+.--+.++..++...+ ...|..||+|.++.+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 45569999999432222233333332 2357899999997554
No 207
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.66 E-value=0.008 Score=63.32 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=35.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSI 257 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 257 (1175)
..-.++.|+|.+|+|||++|.+++..... .-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~---~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAK---NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEECC-CCCHHHH
Confidence 34489999999999999999998875432 34568899887 5555443
No 208
>PRK09183 transposase/IS protein; Provisional
Probab=96.65 E-value=0.0056 Score=65.37 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=52.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
..+.|+|++|+|||+||.++....... .+ .+.+++ ..++...+-..... .. ....+.+. ..+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~--G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA--GI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VMA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc--CC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hcC
Confidence 467899999999999999997643222 12 233443 22333333221111 01 11222222 235
Q ss_pred cEEEEEecCccCCcccHH--HHhcccCCC-CCCcEEEEecCCh
Q 047556 290 KIFLVLDDVWNEDYGLWE--DLKAPLMGA-APNSKIVVTTRHS 329 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 329 (1175)
.-++|+||+.......+. .+...+... ..+ .+||||...
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCCC
Confidence 569999999654333333 233322221 134 488888743
No 209
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.047 Score=60.90 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=86.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
.....|.+.|++|+|||+||..++... .|..+=-++. ++. +|.. +...............
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSp------e~m-------iG~s--EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISP------EDM-------IGLS--ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeCh------HHc-------cCcc--HHHHHHHHHHHHHHhh
Confidence 466788999999999999999998742 4554332221 110 1111 1111222333344455
Q ss_pred cCccEEEEEecCccCCcccHHH---------------HhcccCCCCCCcEEEEecCChhhhhhcCC----CCeeeCCCCC
Q 047556 287 DGKKIFLVLDDVWNEDYGLWED---------------LKAPLMGAAPNSKIVVTTRHSHVASTMEP----IQQYNLRCLS 347 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~~~~~~~~---------------l~~~l~~~~~gs~iivTtr~~~v~~~~~~----~~~~~l~~L~ 347 (1175)
+..--.||+||+. ..-+|-. +....|+.+..--|+-||....+.+.|+. ...|.|..++
T Consensus 596 kS~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 6777899999993 2333322 22223444444446668888899988872 3578888888
Q ss_pred h-hhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhc
Q 047556 348 D-EDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKC 382 (1175)
Q Consensus 348 ~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 382 (1175)
. ++..+.+...-. -.+...+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 7 666666665431 12233444455555555
No 210
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0042 Score=74.26 Aligned_cols=134 Identities=20% Similarity=0.264 Sum_probs=81.3
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCcEEEEEEccCCChHHHHHHHHhcccccccccc---ceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS---GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKF---DIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~ 255 (1175)
..++|-+..+..+.+.+.....+ ......+....|+.|||||-||++++.. -| +..+-++.|..-.-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~------Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA------LFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH------hcCCCccceeechHHHHHHH
Confidence 35899999999999988654321 1145678888999999999999998864 23 333434333322111
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccE-EEEEecCccCCcccHHHHhcccCCCC-----------CCcEEE
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKI-FLVLDDVWNEDYGLWEDLKAPLMGAA-----------PNSKIV 323 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ii 323 (1175)
.+-+-+|.+..- -..++ .-.+-+.++.++| +|.||++....++..+-+..-|.++. .++-||
T Consensus 565 ----sVSrLIGaPPGY-VGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 565 ----SVSRLIGAPPGY-VGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred ----HHHHHhCCCCCC-ceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence 222233333211 01111 2234455667877 88899998777777777766665431 245567
Q ss_pred EecC
Q 047556 324 VTTR 327 (1175)
Q Consensus 324 vTtr 327 (1175)
+||.
T Consensus 639 mTSN 642 (786)
T COG0542 639 MTSN 642 (786)
T ss_pred Eecc
Confidence 7775
No 211
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.002 Score=62.45 Aligned_cols=102 Identities=19% Similarity=0.235 Sum_probs=63.9
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEeccccccccccccc-CcccccEEeccCccccccCch--hhhccCCCceee
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTC-SLINLQILLLRGCYYLLKLPS--KMRKLINLRHLD 678 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 678 (1175)
..-.+||++|.+..++ .|..+..|.+|.|.+|.|+.+-+.+. -+++|++|.|.+| .+.++-+ -+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 4566778888777765 57777788888888888887755544 3556888888877 4544432 155677777777
Q ss_pred ecCccccccCC---ccCCCCCCccccCceee
Q 047556 679 ITGAYLIKEMP---FGMKELKNLQALSNFIV 706 (1175)
Q Consensus 679 l~~~~~~~~~p---~~~~~L~~L~~L~~~~~ 706 (1175)
+-+|.....-- --+..+++|++|+...+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77776322111 11455666666654443
No 212
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.0021 Score=65.89 Aligned_cols=86 Identities=23% Similarity=0.284 Sum_probs=46.5
Q ss_pred hcCCCccEEEecccccccCCC--CccCCcccccEEEecccccccccccc-cCcccccEEeccCcccc-ccCchhhhccCC
Q 047556 598 SKCRKLRVLSLSRSYITELPK--GSMSGWKHLRYLNLSHTWIRNLPKST-CSLINLQILLLRGCYYL-LKLPSKMRKLIN 673 (1175)
Q Consensus 598 ~~~~~Lr~L~Ls~~~i~~l~~--~~~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~ 673 (1175)
..++.++.|||.+|.|+.-.. ..+.++++|++|+|+.|.+..--.+. -.+.+|++|-|.++... ...-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456677777777776654220 23456677777777777554221111 24456677777665321 222333455556
Q ss_pred CceeeecCcc
Q 047556 674 LRHLDITGAY 683 (1175)
Q Consensus 674 L~~L~l~~~~ 683 (1175)
++.|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6666666553
No 213
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0095 Score=68.47 Aligned_cols=187 Identities=14% Similarity=0.161 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
+++||-+.-...|...+.... -..--...|+-|+||||+|+-++.-.-... | ....++..-..-++|
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEI 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhh
Confidence 357999999999999987653 224567889999999999999886432211 1 111222222222333
Q ss_pred HHHhcCC-----CCCccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh-h
Q 047556 262 LESITYS-----SCDLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-H 330 (1175)
Q Consensus 262 l~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~ 330 (1175)
...-..+ ......+++. +.|.+.. +++.=+.|+|.|.--+...|..+...+.......+.|.+|.+. .
T Consensus 83 ~~g~~~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hcCCcccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 2220000 0011122222 2232222 4566699999998777788999988887666677766666554 3
Q ss_pred hhh-hcCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch
Q 047556 331 VAS-TMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 331 v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1175)
+.. ...-.+.|.++.++.++-...+...+........+. ...-|++..+|..
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~----aL~~ia~~a~Gs~ 214 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEED----ALSLIARAAEGSL 214 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHH----HHHHHHHHcCCCh
Confidence 433 223447899999999988888877664433322222 2344666666643
No 214
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.59 E-value=0.002 Score=70.27 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=42.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
.++|.++.++++++++.....+....-+++.++|++|+||||||+.+.+...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6999999999999999765432224568999999999999999999987653
No 215
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.58 E-value=0.005 Score=77.07 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=75.7
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.+|++++...-. .....+-++++...+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~---~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG---GEQNLITINMSEFQEA---- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC---CCcceEEEeHHHhhhh----
Confidence 3589999999999988754311 11134568899999999999999988764211 1112222222221111
Q ss_pred HHHHHHhcCCCCC-c-cchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCC-----------CCcEEEEe
Q 047556 259 RAILESITYSSCD-L-KALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAA-----------PNSKIVVT 325 (1175)
Q Consensus 259 ~~il~~l~~~~~~-~-~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 325 (1175)
..+..-++.+... . .....+...++ +...-+|+||++...+.+.++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1111112221110 0 11112233333 2456799999997766666776665554432 45667777
Q ss_pred cCC
Q 047556 326 TRH 328 (1175)
Q Consensus 326 tr~ 328 (1175)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 216
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.57 E-value=0.01 Score=75.08 Aligned_cols=137 Identities=16% Similarity=0.175 Sum_probs=77.2
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS---GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
..++|.+..++.+...+.....+ ......++.++|+.|+|||++|+.+...... .....+.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~~~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD---DEDAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC---CCCcEEEEechhhcccchH-
Confidence 35899999999999988753211 1023467889999999999999999874321 1123344444432221111
Q ss_pred HHHHHHhcCCCC--CccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCC-----------CCCcEEEEe
Q 047556 259 RAILESITYSSC--DLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGA-----------APNSKIVVT 325 (1175)
Q Consensus 259 ~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivT 325 (1175)
..-++.+.. .......+...++ +....+|+||++.....+.+..+...+..+ -..+-||+|
T Consensus 641 ---~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 111222211 0011112222222 123359999999877777777777666433 133447777
Q ss_pred cCC
Q 047556 326 TRH 328 (1175)
Q Consensus 326 tr~ 328 (1175)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 217
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.55 E-value=0.019 Score=55.49 Aligned_cols=123 Identities=16% Similarity=0.231 Sum_probs=73.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEE---------------------eCC------------------
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVC---------------------VSE------------------ 250 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------~s~------------------ 250 (1175)
..+.++|+.|.||||+.+.+|...+.. ...+|+. |-+
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt----~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPT----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCC----CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 689999999999999999999865432 1334432 000
Q ss_pred ------CCCHHHHHHHHHHHhcCCC------CCccchHHHHHHHHHHhcCccEEEEEecCcc--CCcccHHHHhcccCCC
Q 047556 251 ------DFDVLSISRAILESITYSS------CDLKALNEVQVQLKKAVDGKKIFLVLDDVWN--EDYGLWEDLKAPLMGA 316 (1175)
Q Consensus 251 ------~~~~~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~--~~~~~~~~l~~~l~~~ 316 (1175)
...+.+-..+.++..+... .+.+.-++..-.|.+.+-+++-+++-|.--. +..-.|+-+.-.-.-.
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 0112223333344333322 1223334444567777788999999996421 1123455443322334
Q ss_pred CCCcEEEEecCChhhhhhcC
Q 047556 317 APNSKIVVTTRHSHVASTME 336 (1175)
Q Consensus 317 ~~gs~iivTtr~~~v~~~~~ 336 (1175)
..|..||++|.+..+.+.+.
T Consensus 185 r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 185 RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hcCcEEEEEeccHHHHHhcc
Confidence 56999999999999887664
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.082 Score=58.43 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=64.0
Q ss_pred cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC-hhhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCC
Q 047556 287 DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-SHVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRD 364 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 364 (1175)
.+++-++|+|+++.-....+..+...+..-.+++.+|.+|.+ ..+...+ .-...+.+.+++.++..+.+.....
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~---- 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV---- 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC----
Confidence 356668999999877778888888888766667765555544 4444332 2336899999999999988876421
Q ss_pred CCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 365 LTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 365 ~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
.+ ...++..++|.|.....+
T Consensus 206 --~~------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch------HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755433
No 219
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.51 E-value=0.0091 Score=62.10 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
+.-.++.|+|++|+|||++|.+++..... ....++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCC-CCHHHHHH
Confidence 44589999999999999999998765322 345789999876 56555443
No 220
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.015 Score=65.60 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=83.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccc------------------ccceEE
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETF------------------KFDIKA 244 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~ 244 (1175)
.++|-+....++..+..... .....+.++|++|+||||+|.++++..-.... ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677778888888877432 12235999999999999999999875421110 012333
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcE
Q 047556 245 WVCVSEDFD---VLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSK 321 (1175)
Q Consensus 245 wv~~s~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (1175)
.+..+.... ..+.++++.+....... .++.-++++|+++....+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 343333322 23333333333222110 36778999999976655566666666666667788
Q ss_pred EEEecCCh-hhhhhcC-CCCeeeCCC
Q 047556 322 IVVTTRHS-HVASTME-PIQQYNLRC 345 (1175)
Q Consensus 322 iivTtr~~-~v~~~~~-~~~~~~l~~ 345 (1175)
+|++|... .+..... ....+.+.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88887733 3332211 224566665
No 221
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.0026 Score=61.79 Aligned_cols=87 Identities=25% Similarity=0.229 Sum_probs=70.0
Q ss_pred hhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc--cccCcccccEEeccCccccccCch----hhh
Q 047556 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK--STCSLINLQILLLRGCYYLLKLPS----KMR 669 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~----~i~ 669 (1175)
.|..++.|.+|.|.+|.|+.+.+.--.-+++|..|.|.+|+|.++-+ .+..+++|++|.+-+| ....-+. .+.
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLY 137 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEEE
Confidence 47789999999999999999986555556789999999999987733 4677899999999998 4443332 278
Q ss_pred ccCCCceeeecCcc
Q 047556 670 KLINLRHLDITGAY 683 (1175)
Q Consensus 670 ~L~~L~~L~l~~~~ 683 (1175)
++++|+.||..+-.
T Consensus 138 klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcceEeehhhhh
Confidence 89999999987654
No 222
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.40 E-value=0.0025 Score=64.47 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=63.1
Q ss_pred hhcCCCccEEEecccccccCCC----CccCCcccccEEEecccccc----cc-------cccccCcccccEEeccCcccc
Q 047556 597 LSKCRKLRVLSLSRSYITELPK----GSMSGWKHLRYLNLSHTWIR----NL-------PKSTCSLINLQILLLRGCYYL 661 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~----~~~~~l~~L~~L~L~~~~i~----~l-------p~~i~~L~~L~~L~L~~~~~l 661 (1175)
+..+..+..++||||.|..-.. ..|.+-++|+.-+++.-... ++ -+.+-+|++|+..+||.|-.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3458889999999998753221 45566788999888864211 33 345668999999999999665
Q ss_pred ccCchh----hhccCCCceeeecCcc
Q 047556 662 LKLPSK----MRKLINLRHLDITGAY 683 (1175)
Q Consensus 662 ~~lp~~----i~~L~~L~~L~l~~~~ 683 (1175)
...|+. |++-+.|.||.+++|.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC
Confidence 555554 5677899999999887
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.02 Score=62.95 Aligned_cols=89 Identities=12% Similarity=0.233 Sum_probs=50.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
+.++|+++|++|+||||++..++.....+ . ..+..++.... .....-++...+.++.+.....+.+.+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--K-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--C-CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 45799999999999999999998654322 1 23445554432 12333444444555544332334445554444332
Q ss_pred cC-ccEEEEEecCc
Q 047556 287 DG-KKIFLVLDDVW 299 (1175)
Q Consensus 287 ~~-~r~LlVlDdv~ 299 (1175)
.. +.=++++|-.-
T Consensus 317 ~~~~~DvVLIDTaG 330 (436)
T PRK11889 317 EEARVDYILIDTAG 330 (436)
T ss_pred hccCCCEEEEeCcc
Confidence 21 34577888774
No 224
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.39 E-value=0.0088 Score=60.33 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=62.4
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC--CC-----------
Q 047556 187 RHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED--FD----------- 253 (1175)
Q Consensus 187 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~----------- 253 (1175)
+..+-....+.+... .++.+.|++|.|||.||.+.+-+.-..+ .|+.++++.-.-. .+
T Consensus 5 ~~~~Q~~~~~al~~~--------~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALLNN--------DLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS-------
T ss_pred CCHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHHH
Confidence 344445555655522 5899999999999999988876654444 7888887752111 00
Q ss_pred HHHHHHHHHHHhcCCCCCccchHHHHHH------HHHHhcCc---cEEEEEecCccCCcccHHHHhcccCCCCCCcEEEE
Q 047556 254 VLSISRAILESITYSSCDLKALNEVQVQ------LKKAVDGK---KIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVV 324 (1175)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~------l~~~l~~~---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 324 (1175)
....+.-+...+..-. .....+..... -..+++|+ ..+||+|++.+-+..++..+ +...+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEE
Confidence 0001111122221110 11112221110 01244554 46999999987666555555 445578999999
Q ss_pred ecCChhh
Q 047556 325 TTRHSHV 331 (1175)
Q Consensus 325 Ttr~~~v 331 (1175)
+--..+.
T Consensus 152 ~GD~~Q~ 158 (205)
T PF02562_consen 152 TGDPSQI 158 (205)
T ss_dssp EE-----
T ss_pred ecCceee
Confidence 9765443
No 225
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.39 E-value=0.016 Score=60.74 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=32.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFD 253 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 253 (1175)
..-.++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~---~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAG---QGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCCCCH
Confidence 44589999999999999999998875432 234577887655543
No 226
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.38 E-value=0.0018 Score=62.26 Aligned_cols=87 Identities=25% Similarity=0.147 Sum_probs=47.3
Q ss_pred EEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccE
Q 047556 212 IPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKI 291 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~ 291 (1175)
|.++|++|+|||+||+.+++... ....-+.++...+..+++...--.-+......... ...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l---~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPL---VRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CC---CTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeecccccccccccc---cccc-----ccee
Confidence 67999999999999999997431 12344667777777766532211100000000000 0001 1789
Q ss_pred EEEEecCccCCcccHHHHhcc
Q 047556 292 FLVLDDVWNEDYGLWEDLKAP 312 (1175)
Q Consensus 292 LlVlDdv~~~~~~~~~~l~~~ 312 (1175)
++|||++.......++.+...
T Consensus 68 il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHH
T ss_pred EEEECCcccCCHHHHHHHHHH
Confidence 999999975444444444333
No 227
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.37 E-value=0.018 Score=60.74 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=53.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSISRAILESITYSS---------CDLKA 274 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------~~~~~ 274 (1175)
..-.++.|+|.+|+|||+||.+++......+ ..-..++|++....++...+. ++.+..+... ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 4458999999999999999999876432110 001567899987777765443 3333322211 01123
Q ss_pred hHHHHHHHHHHh----cCccEEEEEecCc
Q 047556 275 LNEVQVQLKKAV----DGKKIFLVLDDVW 299 (1175)
Q Consensus 275 ~~~~~~~l~~~l----~~~r~LlVlDdv~ 299 (1175)
.++....+.+.. ..+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 344444444433 2345588999873
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.30 E-value=0.0044 Score=68.13 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=55.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
.-+.++|..|+|||+||.++++....++ ..++++++. +++..+...-. .. ..+.... + +.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~------~l~~~l~~~~~-~~--~~~~~~~---~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTAD------ELIEILREIRF-NN--DKELEEV---Y-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHH------HHHHHHHHHHh-cc--chhHHHH---H-HHhc-c
Confidence 5689999999999999999998653322 245666543 23333322111 10 1111111 1 2222 2
Q ss_pred cEEEEEecCccCCcccHHH--HhcccCCC-CCCcEEEEecCC
Q 047556 290 KIFLVLDDVWNEDYGLWED--LKAPLMGA-APNSKIVVTTRH 328 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 328 (1175)
-=|||+||+..+....|.. +...+... ..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3589999996654444432 32222221 234568888874
No 229
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.30 E-value=0.0011 Score=69.73 Aligned_cols=14 Identities=21% Similarity=0.135 Sum_probs=9.3
Q ss_pred CCCccEEEEeCCCC
Q 047556 808 YSKMEVLILENCEN 821 (1175)
Q Consensus 808 l~~L~~L~L~~~~~ 821 (1175)
.+.|+.|+|++|.+
T Consensus 297 k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRL 310 (382)
T ss_pred chhhHHhcCCcccc
Confidence 46666777777665
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.27 E-value=0.0047 Score=62.63 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=51.2
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC-CCCHHHHHHHHHHHhcCCCCC---ccchHHHH-HHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE-DFDVLSISRAILESITYSSCD---LKALNEVQ-VQLK 283 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~---~~~~~~~~-~~l~ 283 (1175)
++|+.++|+.|+||||.+..++.....+ -..+..++... .....+-++..++.++.+... ..+..+.. +.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3799999999999999988887755432 33566777653 345667777788888765321 11222222 2333
Q ss_pred HHhcCccEEEEEecC
Q 047556 284 KAVDGKKIFLVLDDV 298 (1175)
Q Consensus 284 ~~l~~~r~LlVlDdv 298 (1175)
+.-.++.=++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 322233346777765
No 231
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.27 E-value=0.026 Score=60.00 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=40.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHHHHHHHHhc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSISRAILESIT 266 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 266 (1175)
..-.++.|+|.+|+|||+||.+++....... .....++|++....++..++ .++++..+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 4458999999999999999999875422211 01367899998887765444 34444433
No 232
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.26 E-value=0.013 Score=58.86 Aligned_cols=36 Identities=36% Similarity=0.569 Sum_probs=27.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEE
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWV 246 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 246 (1175)
...+|.++|+.|+||||+|+.+++.... .+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~---~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL---KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEE
Confidence 4469999999999999999999975432 33344444
No 233
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.24 E-value=0.021 Score=62.58 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccc---ccccceEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 047556 192 AKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVE---TFKFDIKAWVCVSEDFDVLSISRAILESITYS 268 (1175)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~ 268 (1175)
..+.++|..+- ..-.++-|+|.+|+|||+|+.+++-..... +..-..++||+....|++.++. ++++.++.+
T Consensus 83 ~~LD~lLgGGi----~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 83 QALDGILGGGI----ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred HHHHHHhCCCC----cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 34445554432 344899999999999999998876432211 1022478999999988888775 456666543
No 234
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.23 E-value=0.018 Score=61.28 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccc---ccccceEEEEEeCCCCCHHHHHHHHHHHhc
Q 047556 193 KILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVE---TFKFDIKAWVCVSEDFDVLSISRAILESIT 266 (1175)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 266 (1175)
.|.+.|..+- ..-.+.=|+|.+|+|||+|+.+++-..... +..-..++|++-...|...++. +|++..+
T Consensus 26 ~lD~~L~GGi----~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 26 SLDELLGGGI----PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp HHHHHTTSSE----ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred HHHHhhCCCC----CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4455553322 233799999999999999998776433221 1023468999999999887775 5666554
No 235
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.22 E-value=0.032 Score=58.85 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=94.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH-HHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV-LSISRAI 261 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i 261 (1175)
.++|-.++-.++..++...... ++..-|.|+|+.|.|||+|...+..+.+. .-+..+-|........ .-.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~~q~---~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSDIQE---NGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhhHHh---cCCeEEEEEECccchhhHHHHHHH
Confidence 5788888888888887654322 23356889999999999999888776221 2233344555544333 2244555
Q ss_pred HHHhcCC----CCCccchHHHHHHHHHHhc------CccEEEEEecCccCCcccHHHH-hcccC----CCCCCcEEEEec
Q 047556 262 LESITYS----SCDLKALNEVQVQLKKAVD------GKKIFLVLDDVWNEDYGLWEDL-KAPLM----GAAPNSKIVVTT 326 (1175)
Q Consensus 262 l~~l~~~----~~~~~~~~~~~~~l~~~l~------~~r~LlVlDdv~~~~~~~~~~l-~~~l~----~~~~gs~iivTt 326 (1175)
..|+..+ .....+..+....+.+.|+ +-++++|+|..+-...-.-.-+ ...|. ...+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5554332 2122233344444544443 2368888887743211111111 11111 234567788999
Q ss_pred CChhh-------hhhcCCCCeeeCCCCChhhhHHHHHhhh
Q 047556 327 RHSHV-------ASTMEPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 327 r~~~v-------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
|-... -....--.++-+..++-++...+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 96432 2222222345566777777777776654
No 236
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.22 E-value=0.019 Score=72.51 Aligned_cols=138 Identities=20% Similarity=0.215 Sum_probs=76.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
..++|-+..++.+...+..... .......++.++|+.|+|||+||+.+++..-. .-...+-++.+...+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~---~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG---SEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC---CccceEEEEchhccccccHH
Confidence 4588999999999888753221 11123456789999999999999999864211 01223334444322221111
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHhcCcc-EEEEEecCccCCcccHHHHhcccCCC-----------CCCcEEEEec
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAVDGKK-IFLVLDDVWNEDYGLWEDLKAPLMGA-----------APNSKIVVTT 326 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTt 326 (1175)
.-++.+. .-...++ ...+.+.++.++ -+++||++.....+.+..+...+..+ ...+-||+||
T Consensus 586 ----~l~g~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 586 ----KLIGSPP-GYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred ----HhcCCCC-cccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 1122211 0000000 112334444444 58999999877777777777665542 1345567777
Q ss_pred CC
Q 047556 327 RH 328 (1175)
Q Consensus 327 r~ 328 (1175)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 64
No 237
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.21 E-value=0.1 Score=58.59 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccc
Q 047556 188 HQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVE 236 (1175)
Q Consensus 188 ~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 236 (1175)
+.-.+.+.+.+..... ....+|+|.|.=|+|||++.+.+.+..+..
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445667777765432 355899999999999999999998765443
No 238
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.20 E-value=0.022 Score=54.95 Aligned_cols=117 Identities=18% Similarity=0.125 Sum_probs=63.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC---CCCHHHHHHHHHHHh-----cCCC----CC-ccc--
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE---DFDVLSISRAILESI-----TYSS----CD-LKA-- 274 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~il~~l-----~~~~----~~-~~~-- 274 (1175)
..|-|++..|.||||+|...+-..-.. .+ .+.+|.+-. ......+++.+ ..+ +... .+ ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--GY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 467888888999999997776533221 22 334443322 23344443333 111 1100 00 011
Q ss_pred -hHHHHHHHHHHhc-CccEEEEEecCcc---CCcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 275 -LNEVQVQLKKAVD-GKKIFLVLDDVWN---EDYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 275 -~~~~~~~l~~~l~-~~r~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
........++.+. +.-=|+|||++-. -..-..+++...+.....+..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1111222344443 4556999999832 123455667777777777889999999854
No 239
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0022 Score=65.25 Aligned_cols=105 Identities=24% Similarity=0.277 Sum_probs=67.2
Q ss_pred hcCCCccEEEecccccccCCCCccCCcccccEEEeccc--ccc-cccccccCcccccEEeccCcccccc---Cchhhhcc
Q 047556 598 SKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHT--WIR-NLPKSTCSLINLQILLLRGCYYLLK---LPSKMRKL 671 (1175)
Q Consensus 598 ~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~L 671 (1175)
-.+..|..|++.++.++.+. .|..|++|++|.++.| .+. .++....++++|++|+|++| .++. ++. +.++
T Consensus 40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKEL 115 (260)
T ss_pred ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhh
Confidence 34555666666666665553 5667888888888888 444 55555566688888888888 4443 222 5667
Q ss_pred CCCceeeecCccccccCC----ccCCCCCCccccCceeec
Q 047556 672 INLRHLDITGAYLIKEMP----FGMKELKNLQALSNFIVG 707 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p----~~~~~L~~L~~L~~~~~~ 707 (1175)
.+|..|++..|.... +- ..+.-+++|..|+.+.+.
T Consensus 116 ~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 778888888776332 21 114556677777666554
No 240
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.025 Score=63.11 Aligned_cols=53 Identities=32% Similarity=0.377 Sum_probs=38.7
Q ss_pred ccccch---hhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccc
Q 047556 183 TVFGRH---QDKAKILEMVSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEV 235 (1175)
Q Consensus 183 ~~vgr~---~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 235 (1175)
++-|-| .|+++|++.|.++.. -|..-++=|.++|++|.|||-||++|+-+..+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 455665 467888888876532 11144567899999999999999999986554
No 241
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.028 Score=65.07 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=66.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
+.+.+|.++-+++|++.+.-..-.+..+.+++..+|++|||||.+|+.++.-... .| +-++++.-.|..++--.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR---kF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR---KF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC---ce---EEEeccccccHHhhccc
Confidence 4567999999999999886554333356689999999999999999999975332 22 23455655555444211
Q ss_pred HHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCcc
Q 047556 261 ILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWN 300 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 300 (1175)
--..+ ..-.....+.++.. +-..=|+.+|.|+.
T Consensus 484 RRTYV------GAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 RRTYV------GAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ceeee------ccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 10011 11122333444432 44566888999853
No 242
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.16 E-value=0.016 Score=68.76 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999998876543 2245689999999999999999763
No 243
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.11 E-value=0.018 Score=57.13 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=30.0
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCC
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFD 253 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 253 (1175)
++.|+|.+|+||||++..+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 3689999999999999999875432 235677887765543
No 244
>PRK04132 replication factor C small subunit; Provisional
Probab=96.08 E-value=0.11 Score=63.98 Aligned_cols=154 Identities=12% Similarity=-0.013 Sum_probs=93.8
Q ss_pred cCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEe
Q 047556 217 MGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLD 296 (1175)
Q Consensus 217 ~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlD 296 (1175)
|.++||||+|.+++++.-..+ .-..++-++++...... .+++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGEN-WRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 678999999999998641111 11235666666544443 334444333211100 01245799999
Q ss_pred cCccCCcccHHHHhcccCCCCCCcEEEEecCCh-hhhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHH
Q 047556 297 DVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-HVASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLF 374 (1175)
Q Consensus 297 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 374 (1175)
+++.-+.++...+...+......+++|.+|.+. .+.... .-...+.+.++++++-.+.+...+...+-..+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 998766677788887776555566766665544 333222 23368999999999988877765532221111 335
Q ss_pred HHHHHHhcCCchHHHH
Q 047556 375 RDKVVGKCRGLPLAAK 390 (1175)
Q Consensus 375 ~~~i~~~c~glPlai~ 390 (1175)
...|++.++|.+-.+.
T Consensus 714 L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 714 LQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 6789999999885443
No 245
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.08 E-value=0.0042 Score=58.00 Aligned_cols=22 Identities=50% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+|+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 246
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.07 E-value=0.019 Score=70.45 Aligned_cols=120 Identities=17% Similarity=0.176 Sum_probs=67.1
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.++|-+..++.+.+.+..... ........+.++|++|+|||++|+.++.... ...+.++++......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------~~~i~id~se~~~~~---- 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERH---- 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC------CCcEEeechhhcccc----
Confidence 478989988888888764211 0112345789999999999999999987532 122344444322211
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHHHhcC-ccEEEEEecCccCCcccHHHHhcccC
Q 047556 260 AILESITYSSCDLKALNEVQVQLKKAVDG-KKIFLVLDDVWNEDYGLWEDLKAPLM 314 (1175)
Q Consensus 260 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~~~~~~~l~~~l~ 314 (1175)
.+..-++.+.... .. .....+.+.++. ..-+|+||++.....+.+..+...+.
T Consensus 529 ~~~~LiG~~~gyv-g~-~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 TVSRLIGAPPGYV-GF-DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred cHHHHcCCCCCcc-cc-cccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1112223221100 00 001122233333 44699999997766666777665554
No 247
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.052 Score=59.92 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=45.4
Q ss_pred CccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-hhhhc-CCCCeeeCCCCChhhhHHHHHhh
Q 047556 288 GKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH-VASTM-EPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
+++-++|+|++..-+...-..+...+.....+..+|++|.+.. +...+ .-...+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4455666788866555556666665554444566666776654 43322 23367889999999998888654
No 248
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.03 E-value=0.038 Score=55.65 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=60.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCC---------------CCccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSS---------------CDLKA 274 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------------~~~~~ 274 (1175)
.+++|.|..|.|||||++.+...... ....+++.-. ++......+-..++.-. .....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 68999999999999999999875332 1122222110 11111111111111100 01111
Q ss_pred hHHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCCCCCcEEEEecCChhhhh
Q 047556 275 LNEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGAAPNSKIVVTTRHSHVAS 333 (1175)
Q Consensus 275 ~~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (1175)
-+...-.+.+.+-.++-++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122223355566678889999987542 22233333333332224677888888877654
No 249
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.99 E-value=0.0046 Score=59.16 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=60.5
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 047556 185 FGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILES 264 (1175)
Q Consensus 185 vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~ 264 (1175)
||+-..++++.+.+..-.. ....|.|+|..|+||+++|+.++.........|..+ .+... .
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----------
Confidence 5666777777776654322 225678999999999999999987543211012110 00000 0
Q ss_pred hcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCC-CCCcEEEEecCCh
Q 047556 265 ITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGA-APNSKIVVTTRHS 329 (1175)
Q Consensus 265 l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~ 329 (1175)
.+.+.+ .+.--|+++|+..-..+....+...+... ....|+|.||+..
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 14445778998665555555666555432 5678999998844
No 250
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.97 E-value=0.023 Score=61.70 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=48.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
..++++++|++|+||||++..++.....+. .-..+..|+..... .....+....+.++.+.....+...+...+.. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-L 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-c
Confidence 457999999999999999998887543320 11245556654321 22333334444444443223333444444443 3
Q ss_pred cCccEEEEEecC
Q 047556 287 DGKKIFLVLDDV 298 (1175)
Q Consensus 287 ~~~r~LlVlDdv 298 (1175)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 457777754
No 251
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.024 Score=68.12 Aligned_cols=156 Identities=16% Similarity=0.193 Sum_probs=84.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
+.++||++|+.++++.|.....+. -.++|.+|||||++|.-++...-... .--+..++. . ++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN------PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L----D~---- 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN------PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L----DL---- 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC------CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e----cH----
Confidence 458999999999999998765432 24789999999999876665321110 000111110 0 11
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHh-cCccEEEEEecCccC---------CcccHHHHhcccCCCCCCcEEEEecCC
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAV-DGKKIFLVLDDVWNE---------DYGLWEDLKAPLMGAAPNSKIVVTTRH 328 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~ 328 (1175)
..-+.+ ..-..+.++....+.+.+ +.++..|++|.+..- .++ -..+..|....+. -++|-.|-.
T Consensus 235 ---g~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D-AaNiLKPaLARGe-L~~IGATT~ 308 (786)
T COG0542 235 ---GSLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD-AANLLKPALARGE-LRCIGATTL 308 (786)
T ss_pred ---HHHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc-hhhhhHHHHhcCC-eEEEEeccH
Confidence 111111 112234455444444444 345899999998541 011 2223333333322 345544443
Q ss_pred hhhhhhc-------CCCCeeeCCCCChhhhHHHHHhh
Q 047556 329 SHVASTM-------EPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 329 ~~v~~~~-------~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
.+.-... .-.+.+.|..-+.+++...+.-.
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 3332222 24567888999999998887643
No 252
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0041 Score=37.42 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=10.6
Q ss_pred ccEEEecccccccccccccC
Q 047556 627 LRYLNLSHTWIRNLPKSTCS 646 (1175)
Q Consensus 627 L~~L~L~~~~i~~lp~~i~~ 646 (1175)
|++|+|++|.++.+|++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45555555555555555443
No 253
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.93 E-value=0.027 Score=61.33 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=55.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQ 281 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~ 281 (1175)
+.-+++-|+|++|+||||||.+++..... .-..++|++..+.++.. .+++++.+.. .....++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 45589999999999999999988765432 23467899887766653 3455544321 12234444444
Q ss_pred HHHHhc-CccEEEEEecCc
Q 047556 282 LKKAVD-GKKIFLVLDDVW 299 (1175)
Q Consensus 282 l~~~l~-~~r~LlVlDdv~ 299 (1175)
+...++ +..-++|+|.|-
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 544443 456799999873
No 254
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.93 E-value=0.065 Score=67.10 Aligned_cols=180 Identities=19% Similarity=0.188 Sum_probs=91.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANSP-------SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
+++.|.+..++++.+.+...-. -+-...+-+.++|++|+|||+||+++++.... .| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~---~~---i~i~~~----- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA---YF---ISINGP----- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC---eE---EEEecH-----
Confidence 3578999999998887643210 01123356889999999999999999885321 22 222211
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCc------c-----cHHHHhcccCCC-CCCcEE
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDY------G-----LWEDLKAPLMGA-APNSKI 322 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~------~-----~~~~l~~~l~~~-~~gs~i 322 (1175)
.+ .... .......+...+.......+.+|++|+++.-.. . ....+...+... ..+..+
T Consensus 247 -~i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EI----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HH----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 1100 001112222233333356678999999843110 0 112233323221 223344
Q ss_pred EE-ecCChh-hhhhc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH
Q 047556 323 VV-TTRHSH-VASTM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL 387 (1175)
Q Consensus 323 iv-Ttr~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1175)
+| ||.... +...+ .-...+.+...+.++-.+++..+.-... ...+. ....+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccccc----CHHHHHHhCCCCCH
Confidence 44 554332 21111 1234677777788887788875442111 11111 13557777777543
No 255
>PRK06696 uridine kinase; Validated
Probab=95.93 E-value=0.0093 Score=62.52 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=35.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 186 GRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 186 gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.|.+-+++|.+.+..... +...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777888887765332 567899999999999999999998754
No 256
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.89 E-value=0.048 Score=63.48 Aligned_cols=159 Identities=17% Similarity=0.140 Sum_probs=81.8
Q ss_pred CccccchhhHHHHHHHHhc---C-CCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSA---N-SPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSI 257 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 257 (1175)
.++.|.+..++.+.+.... . ..-|-...+-|.++|++|+|||.+|+++++.... .| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~---~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL---PL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CE---EEEEhH------Hh
Confidence 3567777666655543211 0 0001134467899999999999999999986432 11 112211 11
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC--------CcccHH----HHhcccCCCCCCcEEEEe
Q 047556 258 SRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE--------DYGLWE----DLKAPLMGAAPNSKIVVT 325 (1175)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--------~~~~~~----~l~~~l~~~~~gs~iivT 325 (1175)
. ... .......+...+...-...+++|++|+++.- +...-. .+...+.....+.-||.|
T Consensus 296 ~----~~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 F----GGI-----VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred c----ccc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1 100 0011111222222222357899999998531 000111 122222223334456667
Q ss_pred cCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhhcc
Q 047556 326 TRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHAFV 361 (1175)
Q Consensus 326 tr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~ 361 (1175)
|.+..... .+ .-+..+.+..-+.++-.++|..+...
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 76554221 11 23467888888888888888877643
No 257
>PTZ00494 tuzin-like protein; Provisional
Probab=95.88 E-value=0.42 Score=52.87 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=105.9
Q ss_pred CCCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHH
Q 047556 177 SVPTERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLS 256 (1175)
Q Consensus 177 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (1175)
.......+|.|+.+-..+.+.|.+... ..++++++.|.-|.||++|.+........ ..++|.+.... +
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~------paV~VDVRg~E---D 433 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV------ALVHVDVGGTE---D 433 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC------CeEEEEecCCc---c
Confidence 334566899999999999998877654 56799999999999999999998875433 45778887654 4
Q ss_pred HHHHHHHHhcCCCCCc--cchHHHH---HHHHHHhcCccEEEEEecCccCCcccHHHHh---cccCCCCCCcEEEEecCC
Q 047556 257 ISRAILESITYSSCDL--KALNEVQ---VQLKKAVDGKKIFLVLDDVWNEDYGLWEDLK---APLMGAAPNSKIVVTTRH 328 (1175)
Q Consensus 257 ~~~~il~~l~~~~~~~--~~~~~~~---~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~iivTtr~ 328 (1175)
-++.+.+.++.+..+. +-++-+. ..-+....++.-+||+-==.. .....+. ..|.....-|+|++---.
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREG---ssL~RVYnE~vaLacDrRlCHvv~EVpl 510 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREG---SDLGRVYGEVVSLVSDCQACHIVLAVPM 510 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccC---CcHHHHHHHHHHHHccchhheeeeechH
Confidence 5677888888775322 2222222 223333456666666642211 1122221 123334456788876555
Q ss_pred hhhhhhc---CCCCeeeCCCCChhhhHHHHHhh
Q 047556 329 SHVASTM---EPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 329 ~~v~~~~---~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
+.+.-.. .-...|.+..++.++|.++-.+.
T Consensus 511 ESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 511 KALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhhchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 4433221 12356889999999998887654
No 258
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.012 Score=62.47 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=48.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
.-+.++|.+|+|||.||.++.++.- + .--.+.++++ .+++.++....... ....++.+.+ .+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~~------~el~~~Lk~~~~~~--------~~~~~l~~~l-~~ 167 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFITA------PDLLSKLKAAFDEG--------RLEEKLLREL-KK 167 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEEH------HHHHHHHHHHHhcC--------chHHHHHHHh-hc
Confidence 4589999999999999999999755 2 2234455543 34555555544321 1112222222 23
Q ss_pred cEEEEEecCccCCcccHH
Q 047556 290 KIFLVLDDVWNEDYGLWE 307 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~ 307 (1175)
-=||||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 348999999765555555
No 259
>PRK13695 putative NTPase; Provisional
Probab=95.88 E-value=0.0071 Score=60.67 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEccCCChHHHHHHHHhcccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
.++|+|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999887543
No 260
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.85 E-value=0.098 Score=65.51 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=93.6
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS-------GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
..+.|.+..++++.+.+...-.. +....+-+.++|++|+|||++|+++++.... .| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~---~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA---NF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE-----EEEehH---
Confidence 34678888877777765421100 1123355889999999999999999986432 22 222211
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC------C--cc----cHHHHhcccCC--CCCCc
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE------D--YG----LWEDLKAPLMG--AAPNS 320 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------~--~~----~~~~l~~~l~~--~~~gs 320 (1175)
+++...- ......+...+...-...+.+|++|+++.- . .. ....+...+.. ...+.
T Consensus 522 -----~l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -----EILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -----HHhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1111110 111111222222233467899999998431 0 00 11223333332 12345
Q ss_pred EEEEecCChhhhhh-c----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch
Q 047556 321 KIVVTTRHSHVAST-M----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 321 ~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1175)
-||.||...+.... + .-...+.+...+.++-.++|..+.... .......+ ..+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCCH----HHHHHHcCCCC
Confidence 56667766554321 1 234678888888888888887654321 11122222 45667777644
No 261
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.85 E-value=0.028 Score=61.15 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQ 281 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~ 281 (1175)
+.-+++-|+|++|+||||||.+++..... .-..++||+....++.. .+++++.+.+ ...+.++....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHH
Confidence 44589999999999999999998765432 33567899887776653 3444443321 12234444444
Q ss_pred HHHHh-cCccEEEEEecC
Q 047556 282 LKKAV-DGKKIFLVLDDV 298 (1175)
Q Consensus 282 l~~~l-~~~r~LlVlDdv 298 (1175)
+...+ ++..-++|+|-|
T Consensus 125 ~~~li~s~~~~lIVIDSv 142 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHHhccCCCEEEEcch
Confidence 44444 345679999987
No 262
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.84 E-value=0.036 Score=58.69 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=53.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------------
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC---------------- 270 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---------------- 270 (1175)
+...++.|+|.+|+|||++|.++...... .-..++|++.... ...+.+.+ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 45589999999999999999998654221 2346788888654 34444443 33332211
Q ss_pred ----CccchHHHHHHHHHHhcC-ccEEEEEecCc
Q 047556 271 ----DLKALNEVQVQLKKAVDG-KKIFLVLDDVW 299 (1175)
Q Consensus 271 ----~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~ 299 (1175)
.....+.....+.+.+.. +.-++|+|.+-
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 011224455555555543 55689999874
No 263
>PRK09354 recA recombinase A; Provisional
Probab=95.84 E-value=0.03 Score=61.41 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=56.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQ 281 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~ 281 (1175)
+.-+++-|+|++|+||||||.+++..... .-..++||+....++.. .+++++.+.. .....++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 45589999999999999999988765432 33567899988877753 3455554321 12234444444
Q ss_pred HHHHhc-CccEEEEEecCc
Q 047556 282 LKKAVD-GKKIFLVLDDVW 299 (1175)
Q Consensus 282 l~~~l~-~~r~LlVlDdv~ 299 (1175)
+...++ +..-+||+|-|-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 444443 456799999973
No 264
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.025 Score=62.88 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=52.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE-DFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
.++.++|+.|+||||++..+......+. ....+..++... .....+-++...+.++.+.....+..++...+. .+.+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 6899999999999999999987543211 123455565433 234455666666666665433333333333333 3344
Q ss_pred ccEEEEEecCc
Q 047556 289 KKIFLVLDDVW 299 (1175)
Q Consensus 289 ~r~LlVlDdv~ 299 (1175)
+ -++++|..-
T Consensus 216 ~-DlVLIDTaG 225 (374)
T PRK14722 216 K-HMVLIDTIG 225 (374)
T ss_pred C-CEEEEcCCC
Confidence 4 556699884
No 265
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.82 E-value=0.028 Score=65.35 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
+.-+++.++|++|+||||||+-++++. .| .++=|++|..-+...+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 567899999999999999999999853 23 3566777777666666555555443322 12
Q ss_pred --cCccEEEEEecCccCCcccHHHHh
Q 047556 287 --DGKKIFLVLDDVWNEDYGLWEDLK 310 (1175)
Q Consensus 287 --~~~r~LlVlDdv~~~~~~~~~~l~ 310 (1175)
.+++..||+|.++.......+.+.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvil 408 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVIL 408 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHH
Confidence 268889999999664433334333
No 266
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.81 E-value=0.051 Score=54.03 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=64.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccc---cccc--cccc--eEEEEEeCCCCCHHHHHHHHHHHhcCCCC--C-----ccch
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK---EVET--FKFD--IKAWVCVSEDFDVLSISRAILESITYSSC--D-----LKAL 275 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~---~~~~--~~f~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~--~-----~~~~ 275 (1175)
.+++|+|+.|+|||||.+.+..+. .... ..|. .+.|+ .+ .+.++.++.... + ...-
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 689999999999999999986421 1110 0010 12232 11 455666664321 1 1111
Q ss_pred HHHHHHHHHHhcCc--cEEEEEecCccC-CcccHHHHhcccCCC-CCCcEEEEecCChhhhhhcCCCCeeeC
Q 047556 276 NEVQVQLKKAVDGK--KIFLVLDDVWNE-DYGLWEDLKAPLMGA-APNSKIVVTTRHSHVASTMEPIQQYNL 343 (1175)
Q Consensus 276 ~~~~~~l~~~l~~~--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 343 (1175)
....-.+...+-.+ +-++++|+.... +....+.+...+... ..|..||++|.+.+.... .++++.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22223345555566 778888987432 223333333333221 246778888888776542 3344444
No 267
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.81 E-value=0.047 Score=60.26 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=43.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccc---cccccceEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEV---ETFKFDIKAWVCVSEDFDVLSISRAILESITYS 268 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~ 268 (1175)
..-.+.-|+|.+|+|||+|+..++-.... .+..-..++||+....|++.++.+ +++.++.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 34489999999999999999887643221 110235789999999999888754 56666554
No 268
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.81 E-value=0.078 Score=53.70 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=85.5
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKA---KILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~---~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
+++||.++.+. -|.+.|..++.-+.-.++-|..+|++|.|||.+|+++++...+ -| +.+. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv---p~-----l~vk-------at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV---PL-----LLVK-------AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC---ce-----EEec-------hH
Confidence 46889877654 3566666544323346788999999999999999999997554 22 1111 11
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHh-cCccEEEEEecCccCCc--------ccHHHHhccc----CC--CCCCcEEE
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAV-DGKKIFLVLDDVWNEDY--------GLWEDLKAPL----MG--AAPNSKIV 323 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~~--------~~~~~l~~~l----~~--~~~gs~ii 323 (1175)
.-|-+..| +....++.+.++- +.-++++.+|.++.... .+..++..++ .. .+.|...|
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11112221 1112222222222 45689999998743110 1222222222 22 23466666
Q ss_pred EecCChhhhhhc-C--CCCeeeCCCCChhhhHHHHHhhh
Q 047556 324 VTTRHSHVASTM-E--PIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 324 vTtr~~~v~~~~-~--~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
-+|....+.... . -...++...-+++|-.+++...+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 666666554321 1 22456666667777777777766
No 269
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.15 Score=58.21 Aligned_cols=98 Identities=17% Similarity=0.265 Sum_probs=62.7
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS------GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.++=|.++.++++.+++...... |-...+=|.++|++|.|||.||++++.+..+ .| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v---Pf-----~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV---PF-----LSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC---ce-----Eeecch----
Confidence 45778899999888877543211 1134566899999999999999999997655 22 223222
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCcc
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWN 300 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 300 (1175)
+|+..+.+. +.+.+.+.+.+....-++++++|+++-
T Consensus 258 ----eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 333333322 223333334445567899999999954
No 270
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.77 E-value=0.034 Score=54.83 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=33.5
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 184 VFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 184 ~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
+||....+.++++.+..-.. .. .-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888887765432 12 456799999999999999999853
No 271
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.026 Score=63.06 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998643
No 272
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.22 Score=50.04 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=84.7
Q ss_pred cccc-hhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 184 VFGR-HQDKAKILEMVSANSP-------SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 184 ~vgr-~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
+||+ ++.+++|.+.+.-+.. -|-.+++-|.++|++|.|||-||++|+++ ....|+.||...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh--------t~c~firvsgse--- 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH--------TDCTFIRVSGSE--- 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh--------cceEEEEechHH---
Confidence 5554 6677777665533211 12245677899999999999999999963 334567777542
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC-----------cc---cHHHHhcccCCC--CCC
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED-----------YG---LWEDLKAPLMGA--APN 319 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-----------~~---~~~~l~~~l~~~--~~g 319 (1175)
+.+..-+.. ..-..++.-.-+ ..-+-+|++|.+++.. .+ ..-++...+..+ .++
T Consensus 217 -----lvqk~igeg--srmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 -----LVQKYIGEG--SRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred -----HHHHHhhhh--HHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 111111110 001111111111 2457788888885421 00 111233344433 356
Q ss_pred cEEEEecCChhhhhhc-----CCCCeeeCCCCChhhhHHHHHhhh
Q 047556 320 SKIVVTTRHSHVASTM-----EPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 320 s~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
-+||++|..-++.... ..++.++..+-+++.-.++++-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 7899888766654321 234567777777666666665544
No 273
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.68 E-value=0.074 Score=54.33 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCC------C-CccchHHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCC--CCCcEEEEe
Q 047556 256 SISRAILESITYSS------C-DLKALNEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGA--APNSKIVVT 325 (1175)
Q Consensus 256 ~~~~~il~~l~~~~------~-~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivT 325 (1175)
+....+++.++... + +.+.-++..-.+.+.+-..+-+|+.|+=-.. |...-+.+...+... ..|..||+.
T Consensus 120 ~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~V 199 (226)
T COG1136 120 RAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMV 199 (226)
T ss_pred HHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34455556655431 1 2222334445677888889999999974211 112223333333322 347789999
Q ss_pred cCChhhhhhcC
Q 047556 326 TRHSHVASTME 336 (1175)
Q Consensus 326 tr~~~v~~~~~ 336 (1175)
|.++.+|..+.
T Consensus 200 THd~~lA~~~d 210 (226)
T COG1136 200 THDPELAKYAD 210 (226)
T ss_pred cCCHHHHHhCC
Confidence 99999998643
No 274
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.67 E-value=0.00046 Score=82.91 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=29.7
Q ss_pred ceeecCCcCCc-ccCcCCCCCCCCCCceeccCCCCCCcCCCCC--C-CCCcceeeeccCchhHHh
Q 047556 1081 FLNIIGFRNLK-KLSSKGFQSLTSLEFLWIDDCPNLKSFPEVG--L-PSSILWLNIWSCPMLEKE 1141 (1175)
Q Consensus 1081 ~L~l~~c~~l~-~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~--~-~~sL~~L~i~~cp~L~~~ 1141 (1175)
.+.+.+|+.++ .+. .......+++.|.++.|...+.-.-.. . ..++..+++.+|+.+...
T Consensus 380 ~~~l~gc~~l~~~l~-~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLE-LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHHhcCCcccchHHH-HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 34555666662 221 011122236777777776554422111 1 345667777777766544
No 275
>PHA02244 ATPase-like protein
Probab=95.65 E-value=0.065 Score=58.76 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
-|.|+|++|+|||+||++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999875
No 276
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.63 E-value=0.016 Score=59.14 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=54.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHH-h--
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKA-V-- 286 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l-- 286 (1175)
+++.|.|++|+||||+++.+.......+ ..+.+..... .....+.+..+... ..+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g----~~v~~~apT~----~Aa~~L~~~~~~~a---~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG----KRVIGLAPTN----KAAKELREKTGIEA---QTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSH----HHHHHHHHHHTS-E---EEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC----CeEEEECCcH----HHHHHHHHhhCcch---hhHHHHHhcCCcccccc
Confidence 6889999999999999999876443321 2333333222 12222333333211 1111111000000 0
Q ss_pred ---cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhh
Q 047556 287 ---DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHV 331 (1175)
Q Consensus 287 ---~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 331 (1175)
..++-+||+|++..-+...+..+...... .|+++|+.--..+.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 12345999999976655666666665554 47788877654443
No 277
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.62 E-value=0.083 Score=52.37 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=60.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcccccccc--ccc---eEEEEEeCCCCCHHHHHHHHHHHhcC-CCCCccchHHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETF--KFD---IKAWVCVSEDFDVLSISRAILESITY-SSCDLKALNEVQVQLK 283 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~f~---~~~wv~~s~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~l~ 283 (1175)
.+++|+|..|.|||||++.+......... .++ .+.++ .+..... -..+.+.+.. .......-+...-.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccc--cccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 68999999999999999999875432110 111 12222 2222111 0122222211 1112222333334456
Q ss_pred HHhcCccEEEEEecCccC-CcccHHHHhcccCCCCCCcEEEEecCChhhhh
Q 047556 284 KAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGAAPNSKIVVTTRHSHVAS 333 (1175)
Q Consensus 284 ~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (1175)
+.+-.++-++++|+--.. +....+.+...+... +..||++|.+.....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 666677888999986432 222333333333322 456888888776543
No 278
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.055 Score=54.01 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=59.9
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC--CCCHHHHHHHHHHHhcCCCC-----C-------ccch
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE--DFDVLSISRAILESITYSSC-----D-------LKAL 275 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~-----~-------~~~~ 275 (1175)
.+++|+|..|.|||||.+.++.-... ....+++.-.. ...... ....++.-.. . ...-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDP----TSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC----CCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCHH
Confidence 68999999999999999999875332 12223221100 001111 1111111000 0 0111
Q ss_pred HHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCCCCCcEEEEecCChhhhhh
Q 047556 276 NEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGAAPNSKIVVTTRHSHVAST 334 (1175)
Q Consensus 276 ~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 334 (1175)
+...-.+...+-.++-++++|+-... |....+.+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 12222345566677889999987432 222333333333322235678888888776543
No 279
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.60 E-value=0.0083 Score=68.91 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=40.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
+++|.++.+++|++.|.........+-+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 589999999999999833211111445799999999999999999998743
No 280
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.59 E-value=0.069 Score=51.39 Aligned_cols=104 Identities=21% Similarity=0.225 Sum_probs=57.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
.+++|+|..|.|||||++.+...... ....+|+.-. ..++.-. +...-+...-.+.+.+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~~~-------------~~i~~~~-~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP----DEGIVTWGST-------------VKIGYFE-QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC----CceEEEECCe-------------EEEEEEc-cCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999875432 2233333210 0000000 0112222233455566677
Q ss_pred cEEEEEecCccC-CcccHHHHhcccCCCCCCcEEEEecCChhhhh
Q 047556 290 KIFLVLDDVWNE-DYGLWEDLKAPLMGAAPNSKIVVTTRHSHVAS 333 (1175)
Q Consensus 290 r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (1175)
+-++++|+-... +....+.+...+... +..||++|.+.+...
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 789999987432 233344444444332 346888887766543
No 281
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.58 E-value=0.053 Score=59.67 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccc---cccccceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 047556 193 KILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEV---ETFKFDIKAWVCVSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 267 (1175)
.+.++|..+- ....++.|+|.+|+|||+|+..++..... .+..-..++|++....+...+ +.++++.++.
T Consensus 84 ~lD~ll~gGi----~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 84 ELDKLLGGGI----ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred HHHHHhcCCC----CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 4444454332 34589999999999999999988753221 110123679999888777776 3445555544
No 282
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.58 E-value=0.086 Score=60.58 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=48.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhcccc-ccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKE-VETFKFDIKAWVCVSEDF-DVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
.+++.++|++|+||||++..++.... .. .-..+..|+....- .....++...+.++.+.....+.+++...+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-
Confidence 36999999999999999888766433 11 22355666654321 122233333444444433333344444455432
Q ss_pred cCccEEEEEecC
Q 047556 287 DGKKIFLVLDDV 298 (1175)
Q Consensus 287 ~~~r~LlVlDdv 298 (1175)
. ..-+||+|..
T Consensus 298 ~-~~DlVlIDt~ 308 (424)
T PRK05703 298 R-DCDVILIDTA 308 (424)
T ss_pred C-CCCEEEEeCC
Confidence 3 3568889976
No 283
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.57 E-value=0.027 Score=60.11 Aligned_cols=138 Identities=25% Similarity=0.331 Sum_probs=71.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEE----EEeCCCC--------
Q 047556 185 FGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAW----VCVSEDF-------- 252 (1175)
Q Consensus 185 vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w----v~~s~~~-------- 252 (1175)
-+|..+-.--.++|.+ +++..|.+.|.+|.|||-||-+..-..-.....|..++- +.++++.
T Consensus 227 ~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 4466666666777775 567899999999999999986654322111114443331 1122211
Q ss_pred -CHHHHHHHH---HHHhcCCC-CCccchHHHHHH--H----HHHhcCc---cEEEEEecCccCCcccHHHHhcccCCCCC
Q 047556 253 -DVLSISRAI---LESITYSS-CDLKALNEVQVQ--L----KKAVDGK---KIFLVLDDVWNEDYGLWEDLKAPLMGAAP 318 (1175)
Q Consensus 253 -~~~~~~~~i---l~~l~~~~-~~~~~~~~~~~~--l----~~~l~~~---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 318 (1175)
.+..-.+.| ++.+.... +....++....+ | ..+.+|+ .-++|+|.+.+-... ++..-+...+.
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR~G~ 377 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTRAGE 377 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHhccC
Confidence 111111112 22222221 111111111000 0 1223443 468999999765443 44444556789
Q ss_pred CcEEEEecCChhh
Q 047556 319 NSKIVVTTRHSHV 331 (1175)
Q Consensus 319 gs~iivTtr~~~v 331 (1175)
||||+.|--..++
T Consensus 378 GsKIVl~gd~aQi 390 (436)
T COG1875 378 GSKIVLTGDPAQI 390 (436)
T ss_pred CCEEEEcCCHHHc
Confidence 9999998764443
No 284
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0097 Score=69.15 Aligned_cols=166 Identities=18% Similarity=0.235 Sum_probs=88.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
+.+.+|.++.+++|++.|.-..-.+.-+-+++.+||++|||||+|++.+++-... .| +-++++.-.|..++--.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R---kf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR---KF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC---CE---EEEecCccccHHHhccc
Confidence 3457899999999999886432221134489999999999999999999974322 23 23344444444333110
Q ss_pred HHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCc----ccHHHHhcccCCCC-------------CCcEE-
Q 047556 261 ILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDY----GLWEDLKAPLMGAA-------------PNSKI- 322 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----~~~~~l~~~l~~~~-------------~gs~i- 322 (1175)
--..+| .-.....+.+++ .+.+.=+++||.++.... +--..+..-|.+.. .=|.|
T Consensus 396 RRTYIG------amPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 RRTYIG------AMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccccc------cCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 000011 111222233332 245677899999854211 11112222222111 12444
Q ss_pred EEecCCh-h-hhh-hcCCCCeeeCCCCChhhhHHHHHhhh
Q 047556 323 VVTTRHS-H-VAS-TMEPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 323 ivTtr~~-~-v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
.|||-+. + +.. -+.-..++++.+-+++|=.+.-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3555432 1 211 12233678888888888776666554
No 285
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.049 Score=62.59 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=47.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
...+++|+|++|+||||++..++....... ....+..++.... ......++...+.++.......+...+...+.+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-L 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-h
Confidence 347999999999999999988876432221 1234555554321 112233333333343332222233344444433 3
Q ss_pred cCccEEEEEecCc
Q 047556 287 DGKKIFLVLDDVW 299 (1175)
Q Consensus 287 ~~~r~LlVlDdv~ 299 (1175)
. ..-+|++|..-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 3 35588888873
No 286
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.51 E-value=0.068 Score=59.12 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=43.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccc---cccccceEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEV---ETFKFDIKAWVCVSEDFDVLSISRAILESITYS 268 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~ 268 (1175)
....++-|+|.+|+|||+||..++-.... .+..-..++|++....|++.++ .++++.++..
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 34589999999999999999887743221 1101237899999999988776 4566666543
No 287
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.51 E-value=0.077 Score=53.52 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=65.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEE---eCCCCCHHHH------HHHHHHHhcCCCC------Cccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVC---VSEDFDVLSI------SRAILESITYSSC------DLKA 274 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~------~~~il~~l~~~~~------~~~~ 274 (1175)
.+++|+|..|.|||||++.++..... ....+++. +.. .+.... ..++++.++.... ....
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~----~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKP----SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 68999999999999999999875432 22333332 211 111111 1124455443321 1122
Q ss_pred hHHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCC-CC-CcEEEEecCChhhh
Q 047556 275 LNEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGA-AP-NSKIVVTTRHSHVA 332 (1175)
Q Consensus 275 ~~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~ 332 (1175)
-+...-.+.+.+-..+-++++|+-... +....+.+...+... .. +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222333456667778889999987432 223334444434322 12 66788888876654
No 288
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.082 Score=54.91 Aligned_cols=122 Identities=19% Similarity=0.201 Sum_probs=68.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccc-cc--ccc----------ceEEEEEeCCC----C--CH----------------
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEV-ET--FKF----------DIKAWVCVSED----F--DV---------------- 254 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~--~~f----------~~~~wv~~s~~----~--~~---------------- 254 (1175)
.+++|+|+.|.|||||.+.+.--.+. ++ ..| ..+.||.-... + ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 68999999999999999999862210 00 001 24555542111 1 11
Q ss_pred ------HHHHHHHHHHhcCCCC-----CccchHHHH-HHHHHHhcCccEEEEEecCcc----CCcccHHHHhcccCCCCC
Q 047556 255 ------LSISRAILESITYSSC-----DLKALNEVQ-VQLKKAVDGKKIFLVLDDVWN----EDYGLWEDLKAPLMGAAP 318 (1175)
Q Consensus 255 ------~~~~~~il~~l~~~~~-----~~~~~~~~~-~~l~~~l~~~r~LlVlDdv~~----~~~~~~~~l~~~l~~~~~ 318 (1175)
.+...+.++.++...- ..-+-.+.+ -.+.+.|..++=|++||.-.. ......-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 2444455555554321 111122233 346778889999999997432 2222233333334333
Q ss_pred CcEEEEecCChhhhh
Q 047556 319 NSKIVVTTRHSHVAS 333 (1175)
Q Consensus 319 gs~iivTtr~~~v~~ 333 (1175)
|..||++|.+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999998876543
No 289
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.17 Score=57.79 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=85.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
..=|.+||++|.|||-||++|+++... .| +++-.+ +++...- ..+...+...+.+.=..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~---NF-----isVKGP--------ELlNkYV-----GESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA---NF-----ISVKGP--------ELLNKYV-----GESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC---ce-----EeecCH--------HHHHHHh-----hhHHHHHHHHHHHhhcC
Confidence 345789999999999999999997554 44 344332 1111110 11111222222333346
Q ss_pred ccEEEEEecCccC-----CcccH------HHHhcccCC--CCCCcEEEEecCChhhhhh--cC---CCCeeeCCCCChhh
Q 047556 289 KKIFLVLDDVWNE-----DYGLW------EDLKAPLMG--AAPNSKIVVTTRHSHVAST--ME---PIQQYNLRCLSDED 350 (1175)
Q Consensus 289 ~r~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~e 350 (1175)
-+++|+||.++.- +...| .++...+.. ...|.-||-+|..+++... +. -+....|+.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7999999998531 11112 223333332 2356677777776665432 22 34567788888888
Q ss_pred hHHHHHhhhccCCCC-CcchhHHHHHHHHHHhcCCch
Q 047556 351 CWSLFMMHAFVSRDL-TAQQISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 351 ~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~glP 386 (1175)
-.++++........+ ..+-.++++|+. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 888888777532222 233345554432 3555544
No 290
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.46 E-value=0.083 Score=56.12 Aligned_cols=88 Identities=20% Similarity=0.162 Sum_probs=57.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHH-hc---CCC-CCccchHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILES-IT---YSS-CDLKALNEVQVQ 281 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~-l~---~~~-~~~~~~~~~~~~ 281 (1175)
+.-+++=|+|+.|.||||+|.+++-..+.. -..++|++.-+.+++..+.. +... +. ... .......+....
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~---g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKP---GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcC---CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 556899999999999999999987755443 34789999999999877643 3333 21 111 111222233334
Q ss_pred HHHHhcCccEEEEEecC
Q 047556 282 LKKAVDGKKIFLVLDDV 298 (1175)
Q Consensus 282 l~~~l~~~r~LlVlDdv 298 (1175)
+......+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44443445679999988
No 291
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.45 E-value=0.071 Score=56.41 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=54.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCccchHH----
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYS-------SCDLKALNE---- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 277 (1175)
+-++|+|..|+||||||+.+++....+ +-+.++++-+++.. ...++.+++.+.-... ..+......
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 678999999999999999999865432 23456677776654 4556666665431111 011111111
Q ss_pred -HHHHHHHHh--c-CccEEEEEecC
Q 047556 278 -VQVQLKKAV--D-GKKIFLVLDDV 298 (1175)
Q Consensus 278 -~~~~l~~~l--~-~~r~LlVlDdv 298 (1175)
..-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 122345555 3 89999999998
No 292
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.45 E-value=0.097 Score=58.10 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=42.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 267 (1175)
....++-|+|.+|+|||+++.+++....... ..-..++||+....++..++. ++++.++.
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 3458999999999999999998876533210 012378999999888877654 45555543
No 293
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.09 Score=59.14 Aligned_cols=90 Identities=11% Similarity=0.122 Sum_probs=54.7
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccc-cccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVET-FKFDIKAWVCVSED-FDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
.++|.++|+.|+||||.+..++....... ..-..+..+++... ......++..++.++.+.......+.+...+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 47999999999999999988886543211 01234555655532 1233345666666666543334445555555443
Q ss_pred cCccEEEEEecCcc
Q 047556 287 DGKKIFLVLDDVWN 300 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~ 300 (1175)
...-++++|.+-.
T Consensus 253 -~~~DlVLIDTaGr 265 (388)
T PRK12723 253 -KDFDLVLVDTIGK 265 (388)
T ss_pred -CCCCEEEEcCCCC
Confidence 4567889998843
No 294
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.39 E-value=0.027 Score=61.08 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEV 235 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 235 (1175)
..++.++|||++|.|||.+|++++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 56689999999999999999999996543
No 295
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.25 Score=59.27 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=98.4
Q ss_pred CccccchhhH---HHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDK---AKILEMVSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~---~~l~~~l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.++.|-++.+ .++++.|..+.. -|..-++=|.++|++|.|||-||++++-...+ - |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV---P-----F~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV---P-----FFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC---c-----eeeechH----
Confidence 3577877655 455555544321 12244567899999999999999999986554 2 2344432
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHH-HHhcCccEEEEEecCccCC---------------cccHHHHhcccCCCCCC
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLK-KAVDGKKIFLVLDDVWNED---------------YGLWEDLKAPLMGAAPN 319 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~g 319 (1175)
+.++.+.... ....+.+. ..=...+.+|.+|+++... .....++...+..+...
T Consensus 379 ----EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ----EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ----HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 2222222111 11122222 2224568899998874310 01233343334433333
Q ss_pred c--EEEEecCChhhhhh--c---CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHH
Q 047556 320 S--KIVVTTRHSHVAST--M---EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLA 388 (1175)
Q Consensus 320 s--~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1175)
. -++-+|...++... + .-++.+.++.-+...-.++|..++-..... .+..++++ |+...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 3 23335555555432 1 134678888888888889998887543321 23334445 77777776643
No 296
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.12 Score=59.96 Aligned_cols=134 Identities=14% Similarity=0.154 Sum_probs=68.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
...+-|..+|++|.|||++|+++++.... .| +.+..+ +++...-+ .....+....++.=
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~---nF-----lsvkgp--------EL~sk~vG-----eSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGM---NF-----LSVKGP--------ELFSKYVG-----ESERAIREVFRKAR 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcC---Ce-----eeccCH--------HHHHHhcC-----chHHHHHHHHHHHh
Confidence 45677899999999999999999986544 33 223221 11111111 11111222222222
Q ss_pred cCccEEEEEecCccCC-------cccHHH----HhcccCCCCCC--cEEEEecCChhhhh--hcC---CCCeeeCCCCCh
Q 047556 287 DGKKIFLVLDDVWNED-------YGLWED----LKAPLMGAAPN--SKIVVTTRHSHVAS--TME---PIQQYNLRCLSD 348 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~~-------~~~~~~----l~~~l~~~~~g--s~iivTtr~~~v~~--~~~---~~~~~~l~~L~~ 348 (1175)
+-.+.+|.||.++.-. .+.-+. +...+...... .-||-.|..++... -+. -++.+.+..-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 3456888888874311 111222 22333332222 23333343333322 222 446677776677
Q ss_pred hhhHHHHHhhhcc
Q 047556 349 EDCWSLFMMHAFV 361 (1175)
Q Consensus 349 ~e~~~lf~~~~~~ 361 (1175)
+.-.++|+.++..
T Consensus 605 ~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 605 EARLEILKQCAKK 617 (693)
T ss_pred HHHHHHHHHHHhc
Confidence 7777889888754
No 297
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.38 E-value=0.015 Score=60.43 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
-|.|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998753
No 298
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.38 E-value=0.036 Score=54.63 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=43.5
Q ss_pred EEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC--c
Q 047556 212 IPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG--K 289 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~--~ 289 (1175)
+.|.|.+|+|||++|.++... ....++++.-...++.. ..+.|........ ......+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~-~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERIARHRKRRP-AHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHHHHHHHhCC-CCceEeecHHHHHHHHHhcCC
Confidence 678999999999999998764 12356667666666543 3333333222221 112212222233333321 2
Q ss_pred cEEEEEecC
Q 047556 290 KIFLVLDDV 298 (1175)
Q Consensus 290 r~LlVlDdv 298 (1175)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999986
No 299
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.024 Score=57.14 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=44.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCC-HHHHHHHHHHHhcCCCCCccchHHHHHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFD-VLSISRAILESITYSSCDLKALNEVQVQLKKA 285 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1175)
.++.+|+|.|.+|.||||+|+.++..... . .++-++...-+. ....-.+--.......+...+.+-+...|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~---~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV---E--KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc---C--cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 35689999999999999999999984332 1 112222111111 11100000011122223455667777788888
Q ss_pred hcCcc
Q 047556 286 VDGKK 290 (1175)
Q Consensus 286 l~~~r 290 (1175)
+.+++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 300
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.31 E-value=0.44 Score=51.81 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=39.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSI 257 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 257 (1175)
.++=..+....+...+... +.|.|.|.+|+||||+|+.++..... . .+.|.++...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~l~~---~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAARLNW---P---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHHHCC---C---eEEEEecCCCChhhc
Confidence 3444444555666666532 45899999999999999999985432 1 235555555544443
No 301
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.016 Score=54.35 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=22.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcccccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVE 236 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~ 236 (1175)
.-|+|.|++|+||||+++.+.+..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 468999999999999999999765543
No 302
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.28 E-value=0.096 Score=52.17 Aligned_cols=102 Identities=19% Similarity=0.111 Sum_probs=56.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEE------eCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVC------VSEDFDVLSISRAILESITYSSCDLKALNEVQVQLK 283 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1175)
.+++|+|..|.|||||++.+..-... ....+++. +.+... ...-+...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP----NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC----CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 68999999999999999999864322 11222221 111111 122223333455
Q ss_pred HHhcCccEEEEEecCccC-CcccHHHHhcccCCC-CC-CcEEEEecCChhhhh
Q 047556 284 KAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGA-AP-NSKIVVTTRHSHVAS 333 (1175)
Q Consensus 284 ~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 333 (1175)
+.+..++-++++|+-... +....+.+...+... .. +..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666678889999987432 222223333333221 12 356777887766554
No 303
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.24 E-value=0.098 Score=55.40 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 193 KILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
.+.++|..+- +...++.|.|.+|+|||++|.++....-. .-..++||+... +...+.+.
T Consensus 9 ~LD~~l~GG~----~~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 9 GMDEILHGGI----PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred hHHHHhcCCC----cCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeC--CHHHHHHH
Confidence 4444554332 44589999999999999999887654221 245678888765 34444444
No 304
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.23 E-value=0.047 Score=53.94 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=62.3
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC--CCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE--DFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVD 287 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1175)
.+++|+|..|.|||||.+.++..... ....+++.-.. ..+..+.. ...++.-. +...-+...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~-qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP----DSGEILVDGKEVSFASPRDAR---RAGIAMVY-QLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEECCcCCHHHHH---hcCeEEEE-ecCHHHHHHHHHHHHHh
Confidence 68999999999999999999875332 23334442111 11111111 11122111 12222233334556666
Q ss_pred CccEEEEEecCccC-CcccHHHHhcccCCC-CCCcEEEEecCChhhhh
Q 047556 288 GKKIFLVLDDVWNE-DYGLWEDLKAPLMGA-APNSKIVVTTRHSHVAS 333 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 333 (1175)
.++-++++|+.... +....+.+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77889999987432 223334444444322 23667888888876443
No 305
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.22 E-value=0.011 Score=60.41 Aligned_cols=63 Identities=21% Similarity=0.032 Sum_probs=32.0
Q ss_pred cCCCCcccEEEeeCCCCCCC---CCCCCCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEecc
Q 047556 994 LHKLNSLEHLYLQRCPSIVR---FPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEG 1057 (1175)
Q Consensus 994 ~~~l~~L~~L~l~~c~~l~~---lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~ 1057 (1175)
...+++|++|++++| .+.. +++..-+.+|..|++.+|+..++.......|.-+++|+.|+-..
T Consensus 87 ~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 345566777777766 4432 22222334555555555555554444344444455555555444
No 306
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.21 E-value=0.025 Score=55.89 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=42.9
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccc---hHHHHHHHHHHhc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKA---LNEVQVQLKKAVD 287 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~---~~~~~~~l~~~l~ 287 (1175)
++.|.|.+|+||||+|..+...... .++++.-...++ .+..+.|..........-.. ...+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~------~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL------QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC------CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 6899999999999999999864211 233444333333 33444444433322211111 1123344444333
Q ss_pred CccEEEEEecC
Q 047556 288 GKKIFLVLDDV 298 (1175)
Q Consensus 288 ~~r~LlVlDdv 298 (1175)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 3 337889986
No 307
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.21 E-value=0.12 Score=57.31 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 267 (1175)
+...++-|+|++|+|||++|.+++....... ..-..++||+....+++.++. ++++.++.
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 3458999999999999999998876432211 012478999999888887665 44455543
No 308
>PRK14974 cell division protein FtsY; Provisional
Probab=95.20 E-value=0.088 Score=58.01 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=48.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCCC---ccchHH-HHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSSCD---LKALNE-VQVQL 282 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~---~~~~~~-~~~~l 282 (1175)
+..++.++|++|+||||++..++...... .+ .++.+..... ......++.....++.+... ..+... ....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 45899999999999999888877644322 23 2333433211 12334455566666654321 112222 22223
Q ss_pred HHHhcCccEEEEEecCcc
Q 047556 283 KKAVDGKKIFLVLDDVWN 300 (1175)
Q Consensus 283 ~~~l~~~r~LlVlDdv~~ 300 (1175)
...-....-++++|-+-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 322222233899998843
No 309
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.20 E-value=0.077 Score=60.75 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=49.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCc---cchHHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSSCDL---KALNEVQVQLK 283 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~l~ 283 (1175)
.+.+|.++|.+|+||||.|..++......+ + .++-|++... ....+.++.+..+++.+.... .+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g--~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG--L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC--C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 347899999999999999999987554322 2 3344444321 223455666666665543211 22222222222
Q ss_pred HHhcCccEEEEEecC
Q 047556 284 KAVDGKKIFLVLDDV 298 (1175)
Q Consensus 284 ~~l~~~r~LlVlDdv 298 (1175)
+.+.+. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 56888877
No 310
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.19 E-value=0.032 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+.++|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999864
No 311
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=1.7 Score=45.38 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=80.5
Q ss_pred ccccchhhHHHHHHHHhcCC------CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHH
Q 047556 183 TVFGRHQDKAKILEMVSANS------PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLS 256 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (1175)
++.|-+..++++.+...-+- .++...-+-|.++|++|.||+.||++|+.+.. ..|.+||...
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--------STFFSvSSSD---- 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSD---- 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--------CceEEeehHH----
Confidence 36677777777777542210 01113457799999999999999999998533 2234454431
Q ss_pred HHHHHHHHhcCCCCCccchHHHHHHHHHHh-cCccEEEEEecCccC-------CcccHHHHhc----ccC---CCCCCcE
Q 047556 257 ISRAILESITYSSCDLKALNEVQVQLKKAV-DGKKIFLVLDDVWNE-------DYGLWEDLKA----PLM---GAAPNSK 321 (1175)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~-------~~~~~~~l~~----~l~---~~~~gs~ 321 (1175)
++....+ +.+.+...+.+.- .+|+-+|++|.++.- +.+.-..+.. .+. ....|.-
T Consensus 202 ----LvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 202 ----LVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred ----HHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 1111111 1233344443333 468899999998531 1112222222 222 1234555
Q ss_pred EEEecCChhhhhhc-C--CCCeeeCCCCChhhhHH-HHHhhh
Q 047556 322 IVVTTRHSHVASTM-E--PIQQYNLRCLSDEDCWS-LFMMHA 359 (1175)
Q Consensus 322 iivTtr~~~v~~~~-~--~~~~~~l~~L~~~e~~~-lf~~~~ 359 (1175)
|+=+|..+-+.... . -...+. -||.+..|+. +|.-+.
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIY-IPLPe~~AR~~MF~lhl 312 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIY-IPLPEAHARARMFKLHL 312 (439)
T ss_pred EEecCCCchhHHHHHHHHhhccee-ccCCcHHHhhhhheecc
Confidence 66667665444321 1 112222 3566777765 555554
No 312
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.19 E-value=0.019 Score=56.89 Aligned_cols=43 Identities=23% Similarity=0.157 Sum_probs=29.6
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFD 253 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 253 (1175)
..++.+.|+.|+|||.+|+.+.+-... + .....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~-~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-G-SERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--S-SCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-C-CccchHHHhhhcccc
Confidence 468899999999999999999875331 1 233555566554433
No 313
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.086 Score=64.46 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=71.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCC--CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHA--NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
.++|-++.+..|.+.+.....+-.. ......+.|+.|+|||-||++++.-. -+ ..+..+-++.+. ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~--Fg-se~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV--FG-SEENFIRLDMSE------FQE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH--cC-CccceEEechhh------hhh-
Confidence 3788888888888888765432112 46788899999999999999988642 11 233334443333 222
Q ss_pred HHHHhcCCCCCccchHHHHHHHHHHhcCccE-EEEEecCccCCcccHHHHhcccC
Q 047556 261 ILESITYSSCDLKALNEVQVQLKKAVDGKKI-FLVLDDVWNEDYGLWEDLKAPLM 314 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~~~~~~~~~l~~~l~ 314 (1175)
+.+.++.+. ..-..+....+.+.++.++| +|+||||...+.+....+...+.
T Consensus 633 vskligsp~--gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPP--GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCc--ccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 333333322 11112223356666767765 67799997766655554444443
No 314
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.15 E-value=0.0073 Score=61.24 Aligned_cols=194 Identities=21% Similarity=0.241 Sum_probs=116.0
Q ss_pred cCCcccccEEEecccccc-----cccccccCcccccEEeccCcccc----ccCch-------hhhccCCCceeeecCccc
Q 047556 621 MSGWKHLRYLNLSHTWIR-----NLPKSTCSLINLQILLLRGCYYL----LKLPS-------KMRKLINLRHLDITGAYL 684 (1175)
Q Consensus 621 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l----~~lp~-------~i~~L~~L~~L~l~~~~~ 684 (1175)
+..+..+..++||+|.|. .+...|.+-.+|+..+++.- .. .++|+ .+-++++|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344678899999999886 44556777889999998864 22 23333 356889999999999997
Q ss_pred cccCCcc----CCCCCCccccCceeeccCCCcc-Ccc-ccccccccccccccCCccCCCChhhcchhhhccccccccccc
Q 047556 685 IKEMPFG----MKELKNLQALSNFIVGTGTRSS-GLK-DLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSL 758 (1175)
Q Consensus 685 ~~~~p~~----~~~L~~L~~L~~~~~~~~~~~~-~l~-~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 758 (1175)
....|.. +++-+.|.+|.+.+++.+.... .++ .+..|-+.. .....+.|+....
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK--------------------Kaa~kp~Le~vic 164 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK--------------------KAADKPKLEVVIC 164 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh--------------------hhccCCCceEEEe
Confidence 6666654 6777899999888876554321 111 111111111 1223455555544
Q ss_pred ccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCC------CCCCCCccEEEEeCCCCCCC----CCCC
Q 047556 759 QWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIG------DPSYSKMEVLILENCENCTY----LPST 828 (1175)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~------~~~l~~L~~L~L~~~~~~~~----lp~~ 828 (1175)
..+.....+ .......+..+.+|+.+.+..|.+. |..+. -..+.+|+.|+|.+|.++-. +...
T Consensus 165 grNRlengs-----~~~~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 165 GRNRLENGS-----KELSAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred ccchhccCc-----HHHHHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 333221111 2233445666788999999888664 33221 11367889999988876522 1111
Q ss_pred -cCCCCCccEEeeccC
Q 047556 829 -VLWSSSLKMLEIHNC 843 (1175)
Q Consensus 829 -~~~~~~L~~L~L~~~ 843 (1175)
-.| +.|+.|.+..|
T Consensus 238 l~~W-~~lrEL~lnDC 252 (388)
T COG5238 238 LCEW-NLLRELRLNDC 252 (388)
T ss_pred hccc-chhhhccccch
Confidence 112 55666666655
No 315
>PTZ00035 Rad51 protein; Provisional
Probab=95.13 E-value=0.14 Score=56.80 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccc---cccccceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 047556 192 AKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEV---ETFKFDIKAWVCVSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 267 (1175)
..+.++|..+- ....++.|+|.+|+|||+|+..++-..+. .+..-..++|++....++..++ .++++.++.
T Consensus 105 ~~LD~lLgGGi----~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 105 TQLDKLLGGGI----ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred HHHHHHhCCCC----CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 34555554432 44589999999999999999888743321 1102245679998877777763 455665544
No 316
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.038 Score=51.92 Aligned_cols=45 Identities=36% Similarity=0.412 Sum_probs=34.5
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSS 269 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~ 269 (1175)
+|.|.|++|.||||+|+.++++..... + +.-.++++|++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~----------v----saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL----------V----SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce----------e----eccHHHHHHHHHcCCCH
Confidence 689999999999999999998654321 1 23468888888887653
No 317
>PRK05439 pantothenate kinase; Provisional
Probab=95.07 E-value=0.1 Score=56.64 Aligned_cols=82 Identities=15% Similarity=0.012 Sum_probs=44.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhc-CCCCCccchHHHHHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESIT-YSSCDLKALNEVQVQLKKA 285 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~~~ 285 (1175)
...-+|+|.|.+|+||||+|+.+..-..... .-..+.-++...-......+.+- ..+. ...++.-+.+.+...+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~-~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWP-EHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhC-CCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHH
Confidence 4668999999999999999998876332110 11233444444433333222211 0111 1123344566666666665
Q ss_pred hcCcc
Q 047556 286 VDGKK 290 (1175)
Q Consensus 286 l~~~r 290 (1175)
..++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 55554
No 318
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.07 E-value=0.14 Score=50.00 Aligned_cols=117 Identities=13% Similarity=0.048 Sum_probs=62.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEE--EEEeCCCCCHHHHHHHHHHHh-----cCC----CCCc-cc---
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKA--WVCVSEDFDVLSISRAILESI-----TYS----SCDL-KA--- 274 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~--wv~~s~~~~~~~~~~~il~~l-----~~~----~~~~-~~--- 274 (1175)
..|-|++..|.||||.|...+-..... .+.+.+ |+--.........++.+ .+ +.. ..+. .+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~--g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH--GKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 577888889999999997776543222 222211 22222123334444332 11 110 0000 01
Q ss_pred hHHHHHHHHHHhc-CccEEEEEecCcc---CCcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 275 LNEVQVQLKKAVD-GKKIFLVLDDVWN---EDYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 275 ~~~~~~~l~~~l~-~~r~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
..+.....++.+. +.--++|||.+-. ...-..+++...+.....+..||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1112233344443 4556999999731 122345567777766777889999999763
No 319
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.06 E-value=0.082 Score=52.88 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=59.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC--CCCHHHHHHHHHHHhcCCCCC------------ccch
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE--DFDVLSISRAILESITYSSCD------------LKAL 275 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~~------------~~~~ 275 (1175)
.+++|+|..|.|||||.+.++..... ....+++.-.. ....... ...++.-..+ ...-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRP----TSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC----CCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 68999999999999999999865322 12222221100 0111111 1111110000 1111
Q ss_pred HHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCC-CCCCcEEEEecCChhhhh
Q 047556 276 NEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMG-AAPNSKIVVTTRHSHVAS 333 (1175)
Q Consensus 276 ~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 333 (1175)
+...-.+...+-.++-++++|+.... |......+...+.. ...|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22223345556667779999987432 22223333333322 123667888888877654
No 320
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.05 E-value=0.029 Score=57.38 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=57.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH-HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL-SISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
.++.|+|+.|.||||++..+...... .....++.--. +.... .-...+..+-. ...+.......++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~---~~~~~i~t~e~-~~E~~~~~~~~~i~q~~----vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK---NKTHHILTIED-PIEFVHESKRSLINQRE----VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh---cCCcEEEEEcC-CccccccCccceeeecc----cCCCccCHHHHHHHHhcC
Confidence 47899999999999999987764321 22233333221 11100 00001111100 011122344566777777
Q ss_pred ccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhh
Q 047556 289 KKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVA 332 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 332 (1175)
.+=.+++|++.+ .+.+..+... ...|..|+.|+....+.
T Consensus 74 ~pd~ii~gEird--~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRD--LETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCC--HHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 788999999953 3333333322 22455677777655544
No 321
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.05 E-value=0.03 Score=60.14 Aligned_cols=90 Identities=22% Similarity=0.350 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHH-hcCCC
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILES-ITYSS 269 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~-l~~~~ 269 (1175)
...+++.+.... +-|.++|+.|+|||++++...+..... .| ...-++.+...+...++ .++++ +....
T Consensus 22 ~~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~~--~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~ 90 (272)
T PF12775_consen 22 YSYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDSD--KY-LVITINFSAQTTSNQLQ-KIIESKLEKRR 90 (272)
T ss_dssp HHHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTTC--CE-EEEEEES-TTHHHHHHH-HCCCTTECECT
T ss_pred HHHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCcc--cc-ceeEeeccCCCCHHHHH-HHHhhcEEcCC
Confidence 345556555432 567999999999999999988653221 12 23445566554444433 22221 11110
Q ss_pred CCccchHHHHHHHHHHhcCccEEEEEecCccC
Q 047556 270 CDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE 301 (1175)
Q Consensus 270 ~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 301 (1175)
...- .--.+|+.++++||+--.
T Consensus 91 ~~~~----------gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 91 GRVY----------GPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEE----------EEESSSEEEEEEETTT-S
T ss_pred CCCC----------CCCCCcEEEEEecccCCC
Confidence 0000 001478999999999543
No 322
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.03 E-value=0.11 Score=62.59 Aligned_cols=136 Identities=12% Similarity=0.089 Sum_probs=73.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
...++|....+.++.+.+..-.. .-..|.|+|..|+|||++|+.+++..... -...+.|++..-.. ..+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~---~~pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRA---KRPFVKVNCAALSE--TLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeecCCCCH--HHHHH
Confidence 45799999999999988765432 22457899999999999999998753211 12234455543322 22222
Q ss_pred HHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCC-----------CCcEEEEecCCh
Q 047556 261 ILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAA-----------PNSKIVVTTRHS 329 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 329 (1175)
.+ +|........... ...........-.|+||+|..-.......+...+.... ...+||.||...
T Consensus 266 ~l--fg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 266 EL--FGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred HH--cCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 11 1211100000000 00000001234468899997655555566655553321 135888877543
No 323
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.0041 Score=63.21 Aligned_cols=81 Identities=30% Similarity=0.304 Sum_probs=67.7
Q ss_pred hhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc--cccCcccccEEeccCccccccCchh-----h
Q 047556 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK--STCSLINLQILLLRGCYYLLKLPSK-----M 668 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~-----i 668 (1175)
...+|+.|.||.||-|.|+.+. .+..+.+|+.|.|+.|.|..+-+ .+.+|++|++|-|..|.-.+.-+.. +
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 4678999999999999999985 68999999999999999988744 5789999999999988655544433 5
Q ss_pred hccCCCceee
Q 047556 669 RKLINLRHLD 678 (1175)
Q Consensus 669 ~~L~~L~~L~ 678 (1175)
.-|+||+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 6788888886
No 324
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.02 E-value=0.058 Score=59.92 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=34.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 184 VFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 184 ~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
++|+...+.++.+.+..-... -.-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----DRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----CCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777776554322 245799999999999999999864
No 325
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.01 E-value=0.081 Score=65.77 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=73.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|+...+.++.+.+..-.. .-..|.|+|..|+|||++|+.+++..... -...+.+++..-. ...+...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c~~~~--~~~~~~~ 446 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNCAAMP--AGLLESD 446 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEecccCC--hhHhhhh
Confidence 3689999999888877664332 12468999999999999999998753221 1233455554322 1222211
Q ss_pred HHHhcCCCCCcc-chHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCC-----------CCCcEEEEecCCh
Q 047556 262 LESITYSSCDLK-ALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGA-----------APNSKIVVTTRHS 329 (1175)
Q Consensus 262 l~~l~~~~~~~~-~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~ 329 (1175)
+ ++....... ........+. ....=.|+||+|..-.......+...+... ..+.|||.||...
T Consensus 447 l--fg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 447 L--FGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred h--cCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1 121110000 0001111121 123456999999765555555665554322 1345888888653
No 326
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.00 E-value=0.083 Score=54.02 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=44.3
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccc---eEEEEEeCCCCCHHHHHHHHHHH----hcCCCCCccchHHHHHHHH
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFD---IKAWVCVSEDFDVLSISRAILES----ITYSSCDLKALNEVQVQLK 283 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~il~~----l~~~~~~~~~~~~~~~~l~ 283 (1175)
||+|.|.+|+||||+|+.+.......+ .. ....++............. -.. .....+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~--~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG--IPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT--TTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC--cCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999987654322 22 2333333332222222211 111 1112234456667777777
Q ss_pred HHhcCccEEE
Q 047556 284 KAVDGKKIFL 293 (1175)
Q Consensus 284 ~~l~~~r~Ll 293 (1175)
....++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 6666665444
No 327
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.00 E-value=0.097 Score=52.43 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999988754
No 328
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.99 E-value=0.064 Score=59.64 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=37.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.++|+...+.++.+.+..-... -.-|.|+|..|+||+++|+.++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~----~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPL----DKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHh
Confidence 5899999999888877654322 246789999999999999999864
No 329
>PRK07667 uridine kinase; Provisional
Probab=94.98 E-value=0.03 Score=57.04 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+.+.+.+.... +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666665443 344899999999999999999998754
No 330
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.98 E-value=0.72 Score=50.15 Aligned_cols=156 Identities=11% Similarity=0.072 Sum_probs=87.8
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc--------cccccccceEEEEEe-CCCCCHHHHHHHHHHHhcCCCCCccchHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK--------EVETFKFDIKAWVCV-SEDFDVLSISRAILESITYSSCDLKALNEVQ 279 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~f~~~~wv~~-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 279 (1175)
..+..++|..|.||+++|.++.+.. .... +.+...++.. +......++ +++.+.+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~-~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~---------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE-LPANIILFDIFDKDLSKSEF-LSAINKLYFSS---------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC-CCcceEEeccCCCcCCHHHH-HHHHHHhccCC----------
Confidence 3677799999999999998887643 1111 2222233321 111122111 12222221111
Q ss_pred HHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecC-Chhhhhh-cCCCCeeeCCCCChhhhHHHHHh
Q 047556 280 VQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTR-HSHVAST-MEPIQQYNLRCLSDEDCWSLFMM 357 (1175)
Q Consensus 280 ~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~ 357 (1175)
.-.+.+-++|+|++..........+...+.....++.+|++|. ...+... ......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 0025778899999966555567778877776666777776554 3444432 23457899999999998877765
Q ss_pred hhccCCCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 358 HAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
.. .+ ++.+..++...+|.=-|+..
T Consensus 161 ~~-------~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 KN-------KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred cC-------CC---hhHHHHHHHHcCCHHHHHHH
Confidence 31 11 12245566666663344444
No 331
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.98 E-value=0.31 Score=51.24 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=68.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
+.+.++|+.|+|||+-++.+++. ....+-+..++.+....+...+......... .........+...+++.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s-------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS-------NPNALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc-------CccceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHccC
Confidence 58999999999999999999983 3334445677777777777777666554432 23444555666667889
Q ss_pred cEEEEEecCccCCcccHHHHhcccCC
Q 047556 290 KIFLVLDDVWNEDYGLWEDLKAPLMG 315 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~l~~~l~~ 315 (1175)
.-+++.|+...-....++.+..-...
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHh
Confidence 99999999976556667776654433
No 332
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.92 E-value=0.074 Score=55.30 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 333
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.18 Score=55.59 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=55.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
+.+++.++|+.|+||||++..++.....+ -..+.+|++.... ....-++...+.++.+.....+.+++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~---g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 45899999999999999999888654322 2346667665332 2344556666666654333344455544444332
Q ss_pred -cCccEEEEEecCcc
Q 047556 287 -DGKKIFLVLDDVWN 300 (1175)
Q Consensus 287 -~~~r~LlVlDdv~~ 300 (1175)
.+..-+|++|-+-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456888898743
No 334
>PTZ00301 uridine kinase; Provisional
Probab=94.90 E-value=0.036 Score=56.80 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4799999999999999999887643
No 335
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.89 E-value=0.094 Score=53.81 Aligned_cols=205 Identities=11% Similarity=0.136 Sum_probs=112.5
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc---cccccccceEEEEEeCCC---------
Q 047556 184 VFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK---EVETFKFDIKAWVCVSED--------- 251 (1175)
Q Consensus 184 ~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~~f~~~~wv~~s~~--------- 251 (1175)
+.++++....+...... .+.+-..++|+.|.||-|.+..+.++. .+..-.-+...|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56667776776665542 456788999999999999887666542 111113445556553332
Q ss_pred ------------CCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccE-EEEEecCccCCcccHHHHhcccCCCCC
Q 047556 252 ------------FDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKI-FLVLDDVWNEDYGLWEDLKAPLMGAAP 318 (1175)
Q Consensus 252 ------------~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~~~~~~~~~l~~~l~~~~~ 318 (1175)
..-..+.+++++.++.... ++ .-..+.| ++|+-.+++-..++-..+++.+..-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1122344444444432211 00 0112344 555655544344455556555554456
Q ss_pred CcEEEEecCCh-hhhhhcC-CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch-HHHHHHHHH
Q 047556 319 NSKIVVTTRHS-HVASTME-PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP-LAAKALGGL 395 (1175)
Q Consensus 319 gs~iivTtr~~-~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~ 395 (1175)
.+|+|+..... .+..... -.-.+.+...+++|-...+...+...+-.. ..+++.+|+++++|.- -||-++-..
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l----p~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL----PKELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC----cHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 77877643321 1111111 124678899999999988887764433311 2567889999999854 343333222
Q ss_pred hcCC----------CHHHHHHHHhh
Q 047556 396 LRSK----------RHDAWDEILNS 410 (1175)
Q Consensus 396 l~~~----------~~~~w~~~~~~ 410 (1175)
-..+ ..-+|+..+.+
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHH
Confidence 1111 35678877664
No 336
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.86 E-value=0.1 Score=56.21 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 337
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.055 Score=62.71 Aligned_cols=73 Identities=21% Similarity=0.169 Sum_probs=48.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED--FDVLSISRAILESITYSSCDLKALNEVQVQLKKA 285 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1175)
...-|.|.|+.|+|||+||+++++... +. ..-.+.+|+++.- ...+.+++.+. ..+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~-~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~ 490 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KD-LIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEA 490 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cc-cceEEEEEechhccchhHHHHHHHHH-----------------HHHHHH
Confidence 346789999999999999999998765 33 4556677776642 12222222221 123344
Q ss_pred hcCccEEEEEecCc
Q 047556 286 VDGKKIFLVLDDVW 299 (1175)
Q Consensus 286 l~~~r~LlVlDdv~ 299 (1175)
+.-.+-+|||||++
T Consensus 491 ~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLD 504 (952)
T ss_pred HhhCCcEEEEcchh
Confidence 56788999999984
No 338
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.84 E-value=0.043 Score=54.58 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999864
No 339
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.12 Score=51.60 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=60.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcC--CCC---C---------ccch
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITY--SSC---D---------LKAL 275 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~--~~~---~---------~~~~ 275 (1175)
.+++|+|..|.|||||++.++..... ....+++.-....... ..+...++. +.. . ...-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKP----DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 68999999999999999999875321 2233333110000000 011111111 000 0 1111
Q ss_pred HHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCC-CCCcEEEEecCChhhhh
Q 047556 276 NEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGA-APNSKIVVTTRHSHVAS 333 (1175)
Q Consensus 276 ~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 333 (1175)
+...-.+...+..++-++++|+-... |....+.+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 22223456667788899999997432 223333343333321 23677888888877554
No 340
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.28 Score=57.83 Aligned_cols=153 Identities=17% Similarity=0.202 Sum_probs=83.8
Q ss_pred ccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSP------SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLS 256 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (1175)
++=|-++-+.+|.+-+.-+-. .+-.+..=|.++|++|.|||-+|++|+.+... -|++|-.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL--------~FlSVKGP----- 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL--------NFLSVKGP----- 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee--------eEEeecCH-----
Confidence 455677778888876643210 11122345789999999999999999985433 34555433
Q ss_pred HHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC---------CcccHHHHhcc----cCC----CCCC
Q 047556 257 ISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE---------DYGLWEDLKAP----LMG----AAPN 319 (1175)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---------~~~~~~~l~~~----l~~----~~~g 319 (1175)
+++..--+ .+.+.+.+...+.=..++++|.||.+++- .-...+.+... +.. ...+
T Consensus 740 ---ELLNMYVG-----qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 740 ---ELLNMYVG-----QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred ---HHHHHHhc-----chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 11211111 11222222223333568999999999652 12334444333 222 2234
Q ss_pred cEEEEecCChhhhhh--cC---CCCeeeCCCCChhhhHHHHH
Q 047556 320 SKIVVTTRHSHVAST--ME---PIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 320 s~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~e~~~lf~ 356 (1175)
.-||=+|..++..+. +. -++.+.|++=+++++..-..
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL 853 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVL 853 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHH
Confidence 446666666665431 22 34567788777777665443
No 341
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.79 E-value=0.07 Score=55.55 Aligned_cols=116 Identities=17% Similarity=0.302 Sum_probs=64.7
Q ss_pred CccccchhhHHHHHHHHhcCCCC-CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS-GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
..++|..-..+.|+..+.+--.+ ...++-|++.+|..|+||...|+.+++.....+.+-+ ....
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHH
Confidence 35677776666666666542211 1257789999999999999999998876432221111 1111
Q ss_pred HHHHhcCCCCCccchH----HHHHHHHHHh-cCccEEEEEecCccCCcccHHHHhcccC
Q 047556 261 ILESITYSSCDLKALN----EVQVQLKKAV-DGKKIFLVLDDVWNEDYGLWEDLKAPLM 314 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~----~~~~~l~~~l-~~~r~LlVlDdv~~~~~~~~~~l~~~l~ 314 (1175)
......-+ ....++ ++...++..+ .-+|-|+|||+|+.-...-.+.+...+.
T Consensus 147 fvat~hFP--~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 147 FVATLHFP--HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhhccCC--ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 12222211 122222 2333333333 2378999999996654445555544443
No 342
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.78 E-value=0.15 Score=57.28 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC 270 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~ 270 (1175)
+..+.+.|..+- ..-.++.|.|.+|+|||||+.+++..... .-..++|++.... ... ++..++.++....
T Consensus 68 i~eLD~vLgGGi----~~GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs--~~q-i~~Ra~rlg~~~~ 137 (372)
T cd01121 68 IEELDRVLGGGL----VPGSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEES--PEQ-IKLRADRLGISTE 137 (372)
T ss_pred CHHHHHhhcCCc----cCCeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcC--HHH-HHHHHHHcCCCcc
Confidence 345555554332 33479999999999999999998875432 2246778876543 222 2333445554322
Q ss_pred C-----ccchHHHHHHHHHHhcCccEEEEEecC
Q 047556 271 D-----LKALNEVQVQLKKAVDGKKIFLVLDDV 298 (1175)
Q Consensus 271 ~-----~~~~~~~~~~l~~~l~~~r~LlVlDdv 298 (1175)
. ..+.+.+...+. ..+.-++|+|.+
T Consensus 138 ~l~l~~e~~le~I~~~i~---~~~~~lVVIDSI 167 (372)
T cd01121 138 NLYLLAETNLEDILASIE---ELKPDLVIIDSI 167 (372)
T ss_pred cEEEEccCcHHHHHHHHH---hcCCcEEEEcch
Confidence 1 122333333332 236678888887
No 343
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.72 E-value=0.22 Score=54.25 Aligned_cols=52 Identities=25% Similarity=0.230 Sum_probs=35.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILES 264 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~ 264 (1175)
..++.|.|.+|+||||++.+++...... +-..++|+++... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcccC--HHHHHHHHHHH
Confidence 3688999999999999999987654322 1346788887653 44555555444
No 344
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.061 Score=56.36 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=46.2
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccc--cccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEV--ETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
-|+|.++|++|.|||+|.++.++...+ .+ .|....-+-++. ..++..-... ...-...+.++|.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~-~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTND-RYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecC-ccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHH
Confidence 389999999999999999999997643 23 333333333322 1222222111 1223444555666666
Q ss_pred cCcc--EEEEEecCc
Q 047556 287 DGKK--IFLVLDDVW 299 (1175)
Q Consensus 287 ~~~r--~LlVlDdv~ 299 (1175)
.++. +.+.+|.|.
T Consensus 246 ~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVE 260 (423)
T ss_pred hCCCcEEEEEeHHHH
Confidence 5544 455678873
No 345
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.04 Score=56.86 Aligned_cols=65 Identities=23% Similarity=0.184 Sum_probs=51.6
Q ss_pred HHHhhhcCCCccEEEecccccccCCCCcc-CCcccccEEEecccccc--cccccccCcccccEEeccCc
Q 047556 593 FSNLLSKCRKLRVLSLSRSYITELPKGSM-SGWKHLRYLNLSHTWIR--NLPKSTCSLINLQILLLRGC 658 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~-~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~ 658 (1175)
....+.+++.|++|+|+.|.+.... +.. ..+++|++|-|.++.+. ..-.....++.++.|.++.|
T Consensus 89 I~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4456789999999999999876544 334 46789999999998775 55666788888899988887
No 346
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.69 E-value=0.033 Score=63.36 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 5899999999999988764 35889999999999999999874
No 347
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.68 E-value=0.18 Score=53.57 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=71.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcccccccc---------ccceEEEEEeCCCC-CHHHHHHHHHHHhcCCCC---------
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETF---------KFDIKAWVCVSEDF-DVLSISRAILESITYSSC--------- 270 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---------~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~--------- 270 (1175)
.+..|+|++|+|||+||..++-....... .-..+++++...+. .+..-+..+...++....
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g 81 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSG 81 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEecc
Confidence 36789999999999999888753211100 11234555544433 344444555554421100
Q ss_pred C-------c---cchHHHHHHHHHHh-cCccEEEEEecCcc------CCcccHHHHhcccCC--CCCCcEEEEecCChhh
Q 047556 271 D-------L---KALNEVQVQLKKAV-DGKKIFLVLDDVWN------EDYGLWEDLKAPLMG--AAPNSKIVVTTRHSHV 331 (1175)
Q Consensus 271 ~-------~---~~~~~~~~~l~~~l-~~~r~LlVlDdv~~------~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v 331 (1175)
. . .........+.+.+ ..+.-++|+|-+-. .+......+...+.. ...|+.||+++....-
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 82 RIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred CCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 0 0 00112223333322 35677999996521 222333444333322 2347788887775432
Q ss_pred hh--------hcC-------CCCeeeCCCCChhhhHH
Q 047556 332 AS--------TME-------PIQQYNLRCLSDEDCWS 353 (1175)
Q Consensus 332 ~~--------~~~-------~~~~~~l~~L~~~e~~~ 353 (1175)
.. ..+ ....+.+..++++|+.+
T Consensus 162 ~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 162 SAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred cccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 21 000 22356677777777655
No 348
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.64 E-value=0.11 Score=53.31 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=51.9
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCC-------CCccchHH----
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSS-------CDLKALNE---- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~-------~~~~~~~~---- 277 (1175)
.-++|.|.+|+|||+|+.++.+... -+.++++.+++. ....++.+++...-..+. .+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~-----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD-----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc-----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 5789999999999999999988642 344588888765 455666666644311110 11111111
Q ss_pred -HHHHHHHHh--cCccEEEEEecC
Q 047556 278 -VQVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 278 -~~~~l~~~l--~~~r~LlVlDdv 298 (1175)
..-.+.+++ +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 111223333 689999999998
No 349
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.27 Score=49.51 Aligned_cols=65 Identities=8% Similarity=0.056 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCC-CCCCcEEEEecCChhhhhhcCCCCeee
Q 047556 278 VQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMG-AAPNSKIVVTTRHSHVASTMEPIQQYN 342 (1175)
Q Consensus 278 ~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~ 342 (1175)
....+.+.+-=++-+.|||..++. +.+..+.+...+.. ..+|+.+||.|..+.++....++.++-
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 334455555567889999998653 33344443332221 234777888888899988876665543
No 350
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.58 E-value=0.024 Score=53.55 Aligned_cols=21 Identities=48% Similarity=0.702 Sum_probs=19.4
Q ss_pred EEEEccCCChHHHHHHHHhcc
Q 047556 212 IPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~ 232 (1175)
|+|.|.+|+||||+|+++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 351
>PRK10867 signal recognition particle protein; Provisional
Probab=94.58 E-value=0.095 Score=59.83 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
...+|.++|.+|+||||.|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35899999999999999887777643
No 352
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.57 E-value=0.39 Score=51.36 Aligned_cols=124 Identities=17% Similarity=0.079 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEE---eCCCCCHHHHHHHHHHHhcC
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVC---VSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~il~~l~~ 267 (1175)
.+.++..+... .+..-++|+|+.|.|||||.+.+...... ....+++. +...... .++......
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~~----~~G~i~~~g~~v~~~d~~----~ei~~~~~~ 164 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILST----GISQLGLRGKKVGIVDER----SEIAGCVNG 164 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccCC----CCceEEECCEEeecchhH----HHHHHHhcc
Confidence 44445555432 33467999999999999999999975432 22233331 1111111 223222211
Q ss_pred -CCC-------CccchHHHHHHHHHHh-cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhhh
Q 047556 268 -SSC-------DLKALNEVQVQLKKAV-DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVAS 333 (1175)
Q Consensus 268 -~~~-------~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (1175)
+.. ....... ..-+...+ ...+-++++|.+. ..+.+..+...+. .|..||+||.+..+..
T Consensus 165 ~~q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 165 VPQHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 110 0011111 11222222 2578899999984 3344555555442 4778999998776643
No 353
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.56 E-value=0.094 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
||.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 354
>PRK04328 hypothetical protein; Provisional
Probab=94.56 E-value=0.12 Score=55.00 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED 251 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 251 (1175)
+.-.++.|.|.+|+|||+||.++....-. .-..++|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~---~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEEeeCC
Confidence 34489999999999999999987654222 2356788887664
No 355
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.025 Score=56.09 Aligned_cols=26 Identities=42% Similarity=0.489 Sum_probs=23.1
Q ss_pred cEEEEEEccCCChHHHHHHHHhcccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
-.+|+|-||-|+||||||+.+.+...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999998654
No 356
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.53 E-value=0.059 Score=55.60 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=38.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 190 DKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 190 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
+..++++.+.... ++..+|+|.|+||+|||||..++....+.++ +--.++-|+-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERG-KRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcC-CceEEEEECCCCCCCCCccc
Confidence 4556666666543 3458999999999999999998887665544 33344555555555544443
No 357
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.37 Score=57.50 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=74.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
...+.+.++|++|.|||.||+++++..+. .|-. +... +++... -......+...+...-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~---~fi~-----v~~~--------~l~sk~-----vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRS---RFIS-----VKGS--------ELLSKW-----VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCC---eEEE-----eeCH--------HHhccc-----cchHHHHHHHHHHHHH
Confidence 45568999999999999999999985433 3322 2211 111110 1111222223333344
Q ss_pred cCccEEEEEecCccC------C-c----ccHHHHhcccCCC--CCCcEEEEecCChhhhhh-c----CCCCeeeCCCCCh
Q 047556 287 DGKKIFLVLDDVWNE------D-Y----GLWEDLKAPLMGA--APNSKIVVTTRHSHVAST-M----EPIQQYNLRCLSD 348 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~------~-~----~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~ 348 (1175)
+..+..|++|.++.- . . .....+...+... ..+..||-||-.+..... + .-...+.+..-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 578999999998431 1 0 1222333333322 233345555555443331 1 2345788898999
Q ss_pred hhhHHHHHhhhc
Q 047556 349 EDCWSLFMMHAF 360 (1175)
Q Consensus 349 ~e~~~lf~~~~~ 360 (1175)
++..+.|..+..
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999988874
No 358
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.52 E-value=0.083 Score=58.94 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=49.2
Q ss_pred CccccchhhHHHHHHHHhcC-------CC-CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeC-CCC
Q 047556 182 RTVFGRHQDKAKILEMVSAN-------SP-SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVS-EDF 252 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~-------~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~ 252 (1175)
..++|.++.+..+.-.+... .. ......+-|.++|++|+|||++|+.+...........+...+...+ ...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45888888888776655431 00 0002346789999999999999999998654322122322222222 123
Q ss_pred CHHHHHHHHHHHh
Q 047556 253 DVLSISRAILESI 265 (1175)
Q Consensus 253 ~~~~~~~~il~~l 265 (1175)
+...+++.+.+..
T Consensus 92 dvE~i~r~l~e~A 104 (441)
T TIGR00390 92 DVESMVRDLTDAA 104 (441)
T ss_pred CHHHHHHHHHHHH
Confidence 5566666655543
No 359
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.021 Score=55.69 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEV 235 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 235 (1175)
+.|.+.|.+|+||||+|+++++..+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46889999999999999999875443
No 360
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.52 E-value=0.074 Score=55.03 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=57.4
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC---CccchHHHHHHHHH--
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC---DLKALNEVQVQLKK-- 284 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~-- 284 (1175)
+++.|+|+.|.||||+.+.+....... .-...+|. .. ... ..+.++...++.... .......-..++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la--~~G~~v~a--~~-~~~-~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLA--HIGSFVPA--DS-ATI-GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHH--hCCCeeEc--CC-cEE-eeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 789999999999999999887321100 01111111 10 000 011111222221111 01111111122222
Q ss_pred HhcCccEEEEEecCccCC-cccH----HHHhcccCCC-CCCcEEEEecCChhhhhhc
Q 047556 285 AVDGKKIFLVLDDVWNED-YGLW----EDLKAPLMGA-APNSKIVVTTRHSHVASTM 335 (1175)
Q Consensus 285 ~l~~~r~LlVlDdv~~~~-~~~~----~~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 335 (1175)
.+..++-|+++|...... ..+. ..+...+... ..+..+|+||.+.+++...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 224678999999985432 1111 1222333222 2345899999998887654
No 361
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.51 E-value=0.1 Score=59.53 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=48.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCCC---ccchHHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSSCD---LKALNEVQVQLK 283 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~ 283 (1175)
.+.++.++|.+|+||||.|..++.....+. .+ .++-|++... +...+.++....+.+.+... ..+.........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhC-CC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 357999999999999999888876532111 12 3444444322 12334444555555544221 122333333333
Q ss_pred HHhcCccE-EEEEecCc
Q 047556 284 KAVDGKKI-FLVLDDVW 299 (1175)
Q Consensus 284 ~~l~~~r~-LlVlDdv~ 299 (1175)
+....+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333444 78888763
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.48 E-value=0.12 Score=55.68 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=49.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH--HHHHHHHHHHhcCCCC---Cccch-HHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV--LSISRAILESITYSSC---DLKAL-NEVQV 280 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~---~~~~~-~~~~~ 280 (1175)
.+.+++.++|++|+||||++..++..... .-..+.+++... +.. ..-++...+..+.+.. ...+. .....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~---~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKK---QGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 34589999999999999999888765432 223456666543 222 2333444455443211 11122 22223
Q ss_pred HHHHHhcCccEEEEEecCc
Q 047556 281 QLKKAVDGKKIFLVLDDVW 299 (1175)
Q Consensus 281 ~l~~~l~~~r~LlVlDdv~ 299 (1175)
.+.....+..-++++|-.-
T Consensus 146 ~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHCCCCEEEEeCCC
Confidence 3444334455678888763
No 363
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.47 E-value=0.08 Score=53.87 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=27.1
Q ss_pred EEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC
Q 047556 212 IPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED 251 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 251 (1175)
+.|.|.+|+|||+||.++...... .-..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCC
Confidence 679999999999999988765322 2245778876543
No 364
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.45 E-value=0.13 Score=53.45 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=72.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEE--eC--CCCCHHHHHHHHHHHhcCCCC------CccchHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVC--VS--EDFDVLSISRAILESITYSSC------DLKALNEV 278 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~--~s--~~~~~~~~~~~il~~l~~~~~------~~~~~~~~ 278 (1175)
..+++|+|..|.||||+|+.+..=... ....+.|-. +. ......+-..++++.++.... ..-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 368999999999999999999874332 222222221 10 022344556677777775432 11122233
Q ss_pred H-HHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCC--CCCCcEEEEecCChhhhhhcC
Q 047556 279 Q-VQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMG--AAPNSKIVVTTRHSHVASTME 336 (1175)
Q Consensus 279 ~-~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~ 336 (1175)
+ -.+.+.+.-++-++|.|..-+. +...-.++...+.. ...|-..+..|.+-.++..+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 3 3467778889999999987432 11111223332222 234667788888887777654
No 365
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.44 E-value=0.18 Score=52.89 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=31.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
...++.|.|.+|+||||+|.+++.....+ . ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN--G-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC--C-CcEEEEeCCC--CHHHHHHHH
Confidence 34699999999999999987665543211 2 3456666433 445555555
No 366
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.44 E-value=0.0023 Score=63.13 Aligned_cols=87 Identities=18% Similarity=0.165 Sum_probs=76.8
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCce
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRH 676 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 676 (1175)
+..++..++||++.|.+..+- ..|+.+..|..|+++.|.|..+|+.++.+..++.+++..| ..+..|.++++++.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 456778899999999888777 6788889999999999999999999999999999999888 78899999999999999
Q ss_pred eeecCcccc
Q 047556 677 LDITGAYLI 685 (1175)
Q Consensus 677 L~l~~~~~~ 685 (1175)
+++.++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 999888743
No 367
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.43 E-value=0.056 Score=50.37 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 189 QDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 189 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
++..++-+.+...-. ...+|.+.|.-|+||||+++.+++...
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 445555555544321 226899999999999999999998643
No 368
>PRK13948 shikimate kinase; Provisional
Probab=94.42 E-value=0.28 Score=49.03 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+.|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 44789999999999999999998753
No 369
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.40 E-value=0.059 Score=50.87 Aligned_cols=84 Identities=15% Similarity=0.345 Sum_probs=46.5
Q ss_pred HhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCc-hhhhccC
Q 047556 595 NLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLP-SKMRKLI 672 (1175)
Q Consensus 595 ~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~ 672 (1175)
..|..+++|+.+.+.. .+..+....|.++.+|+.+.+.++ +..++. .+.++.+|+.+.+.++ +..++ ..+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccc
Confidence 3567777788887764 566777677777777888887774 666654 4666767888887652 33333 3356677
Q ss_pred CCceeeecCc
Q 047556 673 NLRHLDITGA 682 (1175)
Q Consensus 673 ~L~~L~l~~~ 682 (1175)
+|+.+++..+
T Consensus 82 ~l~~i~~~~~ 91 (129)
T PF13306_consen 82 NLKNIDIPSN 91 (129)
T ss_dssp TECEEEETTT
T ss_pred cccccccCcc
Confidence 7777777543
No 370
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.40 E-value=0.029 Score=45.90 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+++|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 371
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.40 E-value=0.15 Score=53.77 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
....+++|.|+.|+|||||++.+....+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999987544
No 372
>PRK06547 hypothetical protein; Provisional
Probab=94.36 E-value=0.054 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
....+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999875
No 373
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.36 E-value=0.0072 Score=72.52 Aligned_cols=208 Identities=19% Similarity=0.250 Sum_probs=114.4
Q ss_pred cCccceEEeecCCCCCcc-----CCCCCCCCEEeeCCC-CCccccc-----cCCCCCCccEEEEccCcccccC--ccccC
Q 047556 929 PEALEQLYIWDCQKLESI-----PDGLHNVQRIDIQRC-PSLVSLA-----ERGLPITISSVRIWSCEKLEAL--PNDLH 995 (1175)
Q Consensus 929 ~~~L~~L~l~~~~~l~~~-----p~~~~~L~~L~l~~~-~~L~~l~-----~~~~~~~L~~L~l~~~~~l~~l--p~~~~ 995 (1175)
.+.|+.|.+.+|..+... -...+.|+.|++++| ......+ ....-.+++.|+++.|..++.. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 567888888888765542 234588899988873 2222211 1112257778888887754422 11123
Q ss_pred CCCcccEEEeeCCCCCCCCCCC---CCCCCcceEEEeccCccchhhh-hhhccCCCCCCCeeEeccCCCccccccchhhh
Q 047556 996 KLNSLEHLYLQRCPSIVRFPEE---GFPNNLVELKIRGVDVKMYKAA-IQWGLHRLTSLRRLWIEGCDDDEAECFPDEEM 1071 (1175)
Q Consensus 996 ~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~~~~~~l~~~-~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~ 1071 (1175)
.|++|+.|.+.+|..++...-. ..+++|++|++++ |..++.. ......++++|+.|.+..+.. ...+.....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~--c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--c~~l~~~~l 342 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG--CHGLTDSGLEALLKNCPNLRELKLLSLNG--CPSLTDLSL 342 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec--CccchHHHHHHHHHhCcchhhhhhhhcCC--CccHHHHHH
Confidence 4788888888888654331110 2356788888884 4443222 222244466666666555331 001111110
Q ss_pred h--ccCC-CcccceeecCCcCCcccCcCCCCCCCCCC-ceeccCCCCC-CcCCCCCC-CCCcceeeeccCchhHHh
Q 047556 1072 R--MMLP-TSLCFLNIIGFRNLKKLSSKGFQSLTSLE-FLWIDDCPNL-KSFPEVGL-PSSILWLNIWSCPMLEKE 1141 (1175)
Q Consensus 1072 ~--~~~~-~sL~~L~l~~c~~l~~l~~~~l~~l~~L~-~L~l~~c~~l-~~lp~~~~-~~sL~~L~i~~cp~L~~~ 1141 (1175)
. .... ..+..+.+.+|++++.+...... ..... .+.+.+|+.+ ..+..... ..+++.|+++.|...+..
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccccc
Confidence 0 0112 25667777777777776543333 44444 5778888888 33322111 223899999999866533
No 374
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.36 E-value=0.11 Score=61.94 Aligned_cols=135 Identities=14% Similarity=0.155 Sum_probs=74.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
...++|+...+.++.+.+..-... -..|.|+|..|+|||++|+.+++..... -...+.|++..-.+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~----~~pVlI~Ge~GtGK~~~A~~ih~~s~r~---~~p~v~v~c~~~~~--~~~e~ 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS----DLNVLILGETGVGKELVARAIHAASPRA---DKPLVYLNCAALPE--SLAES 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHhCCcC---CCCeEEEEcccCCh--HHHHH
Confidence 346899999999998888765432 2568899999999999999998753221 12345566554332 22221
Q ss_pred HHHHhcCCCCCccc-hHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCC-----------CCcEEEEecCC
Q 047556 261 ILESITYSSCDLKA-LNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAA-----------PNSKIVVTTRH 328 (1175)
Q Consensus 261 il~~l~~~~~~~~~-~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 328 (1175)
.+ +|........ .......+. ....=-|+||++..-.......+...+.... ...|||.||..
T Consensus 257 ~l--fG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 257 EL--FGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred Hh--cCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 11 1211100000 000000111 1222347899997655555566655553321 24588888864
Q ss_pred h
Q 047556 329 S 329 (1175)
Q Consensus 329 ~ 329 (1175)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 375
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.32 E-value=0.24 Score=54.71 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=59.8
Q ss_pred cEEEEEEccCCChHHH-HHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 209 IAVIPIVGMGGIGKTT-LAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
-++|.++|+.|||||| ||+..+.- .... .-..+..|+.... -...+-++..++-++.+.....+..++...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~-~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY-VMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-Hhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 4899999999999986 45444432 2111 2345666766533 3455667777777787766555666665555432
Q ss_pred cCccEEEEEecCccC--CcccHHHHhcccCC
Q 047556 287 DGKKIFLVLDDVWNE--DYGLWEDLKAPLMG 315 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~--~~~~~~~l~~~l~~ 315 (1175)
++. -+|.+|-+-.. +....+++...+..
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 333 56666776432 22233444444433
No 376
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.30 E-value=0.16 Score=52.27 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=60.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccc--cc-cc-cccc--------------e-EEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK--EV-ET-FKFD--------------I-KAWVCVSEDFDVLSISRAILESITYSSC 270 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~--~~-~~-~~f~--------------~-~~wv~~s~~~~~~~~~~~il~~l~~~~~ 270 (1175)
.+++|+|..|.|||||.+.+.... .. .+ -.|+ . +.++.-....-......+++.... .
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~---~ 103 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVN---E 103 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcc---c
Confidence 689999999999999999988752 11 00 0010 0 111111100000011111221110 1
Q ss_pred CccchHHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCC-CCCcEEEEecCChhhhh
Q 047556 271 DLKALNEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGA-APNSKIVVTTRHSHVAS 333 (1175)
Q Consensus 271 ~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 333 (1175)
....-+...-.+...+-.++-++++|+.-.. +....+.+...+... ..|..||++|.+.....
T Consensus 104 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 1122222333455666677889999987432 222333343333322 23667888888877655
No 377
>PRK08233 hypothetical protein; Provisional
Probab=94.28 E-value=0.035 Score=56.28 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.3
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3799999999999999999998753
No 378
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.28 E-value=0.049 Score=67.44 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=84.0
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC---CccchHHHHHHHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC---DLKALNEVQVQLKKA 285 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~ 285 (1175)
.++++|+|+.|.||||+.+.+.-..- .....++|.+.....+ ..+.++...++.... .......-...+...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l----~aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLAL----MFQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHH----HHHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 47899999999999999988865310 0111112222211000 011111111111000 001111111122222
Q ss_pred hc--CccEEEEEecCccC-CcccHHHH----hcccCCCCCCcEEEEecCChhhhhhcCCCCeeeCCCCChh-hhHHHHHh
Q 047556 286 VD--GKKIFLVLDDVWNE-DYGLWEDL----KAPLMGAAPNSKIVVTTRHSHVASTMEPIQQYNLRCLSDE-DCWSLFMM 357 (1175)
Q Consensus 286 l~--~~r~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~ 357 (1175)
+. ..+-|+++|..-.. +..+...+ ...+. ..|+.+|+||....+.........+.-..+..+ +... |..
T Consensus 397 l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Y 473 (771)
T TIGR01069 397 LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTY 473 (771)
T ss_pred HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEE
Confidence 22 47899999998543 22222223 22232 257899999999887543221111111111111 1111 111
Q ss_pred hhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCHHHHHHHHh
Q 047556 358 HAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSKRHDAWDEILN 409 (1175)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~ 409 (1175)
+... +.+. ...|-+|++++ |+|-.+..-|..+......++..++.
T Consensus 474 kl~~-G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~ 518 (771)
T TIGR01069 474 KLLK-GIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIE 518 (771)
T ss_pred EECC-CCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1111 1111 12355677766 78888877777776554444444443
No 379
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.27 E-value=0.15 Score=54.70 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=31.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED 251 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 251 (1175)
+...++.|.|.+|+|||++|.+++..... .-..+++++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecCC
Confidence 45589999999999999999997664322 2246788887643
No 380
>PRK06217 hypothetical protein; Validated
Probab=94.22 E-value=0.068 Score=54.02 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=25.6
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEE
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWV 246 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 246 (1175)
.|.|.|.+|+||||+|+++.........+-|..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 489999999999999999998654321122445553
No 381
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.21 E-value=0.21 Score=51.66 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=37.0
Q ss_pred HHHHhcCccEEEEEecCccC-CcccHHHHhcccCC-CCCCcEEEEecCChhhhhhcCCCCeeeCCCCC
Q 047556 282 LKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMG-AAPNSKIVVTTRHSHVASTMEPIQQYNLRCLS 347 (1175)
Q Consensus 282 l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~ 347 (1175)
+...+..++-++++|+-... +....+.+...+.. ...|..||++|.+...... ..++.++...
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 44555667889999987432 22333444444432 2246678888888765543 5666666533
No 382
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.18 E-value=0.068 Score=55.85 Aligned_cols=64 Identities=25% Similarity=0.196 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 192 AKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
.+++..+.... ++..+|+|.|.||+||+||..++......++ +--.++-|+-|.+++--.++-+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G-~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERG-HRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCC-cEEEEEEECCCCCCCCcccccc
Confidence 45555555443 4568999999999999999998888766555 4445566666777765555443
No 383
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.15 E-value=0.24 Score=52.23 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=30.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED 251 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 251 (1175)
..-.++.|.|.+|+|||++|.++...... .-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 34489999999999999999987653221 2346788877543
No 384
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.14 E-value=0.41 Score=47.77 Aligned_cols=122 Identities=19% Similarity=0.210 Sum_probs=66.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEe-------------------CCCC------------------
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCV-------------------SEDF------------------ 252 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-------------------s~~~------------------ 252 (1175)
.|++|+|+.|.|||||.+.+..=... -...+||.- -+.|
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~----~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEP----DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCC----CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 69999999999999999998653222 123344421 0111
Q ss_pred -------CHHHHHHHHHHHhcCCCC------CccchHHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCC-CC
Q 047556 253 -------DVLSISRAILESITYSSC------DLKALNEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMG-AA 317 (1175)
Q Consensus 253 -------~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~-~~ 317 (1175)
...+...++++.++.... ..+.-.+..-.|.+.|.=++-++.||..-+. |++...++...+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 122333344444443321 1122223334567778888889999998542 23333333332222 23
Q ss_pred CCcEEEEecCChhhhhhc
Q 047556 318 PNSKIVVTTRHSHVASTM 335 (1175)
Q Consensus 318 ~gs~iivTtr~~~v~~~~ 335 (1175)
.|-..||.|..-..|..+
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 465666677766666543
No 385
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.13 E-value=0.038 Score=53.31 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 047556 211 VIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 386
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.13 E-value=0.039 Score=57.10 Aligned_cols=26 Identities=42% Similarity=0.615 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34589999999999999999999864
No 387
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.12 E-value=0.04 Score=57.24 Aligned_cols=27 Identities=37% Similarity=0.569 Sum_probs=23.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355899999999999999999998753
No 388
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.10 E-value=0.21 Score=49.63 Aligned_cols=118 Identities=16% Similarity=0.039 Sum_probs=64.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC---CCCHHHHHHHHH--HH--hcCC-CCC--c--cc---
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE---DFDVLSISRAIL--ES--ITYS-SCD--L--KA--- 274 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~il--~~--l~~~-~~~--~--~~--- 274 (1175)
..|-|+|..|-||||.|..+.-..-.. .+ .+..|.+-. .......++.+- .- .+.. ... . .+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~--G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGH--GK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHC--CC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 578999999999999997776543221 12 223333321 233444443320 00 0111 000 0 11
Q ss_pred hHHHHHHHHHHh-cCccEEEEEecCcc---CCcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 275 LNEVQVQLKKAV-DGKKIFLVLDDVWN---EDYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 275 ~~~~~~~l~~~l-~~~r~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
........++.+ .++-=++|||.+-. ...-..+++...+.....+..||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 111223334444 44566999999722 123345677777777777889999999763
No 389
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.09 E-value=0.1 Score=58.23 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=49.9
Q ss_pred CccccchhhHHHHHHHHhcC------C-CCC-CCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeC-CCC
Q 047556 182 RTVFGRHQDKAKILEMVSAN------S-PSG-HANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVS-EDF 252 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~------~-~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~ 252 (1175)
..++|.+..++.+..++... . ... ....+-+.++|++|+|||++|+.+.........+++...|...+ ...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 46889999888888777431 0 000 01236789999999999999999988643321123332222221 122
Q ss_pred CHHHHHHHHHHHh
Q 047556 253 DVLSISRAILESI 265 (1175)
Q Consensus 253 ~~~~~~~~il~~l 265 (1175)
+...+++.+....
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5556666655543
No 390
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.03 E-value=0.11 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+++|+|++|+||||+|++++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998754
No 391
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.03 E-value=0.53 Score=44.88 Aligned_cols=86 Identities=19% Similarity=0.272 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHhcCCCC------CccchHHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhccc--CCCCCCcE
Q 047556 251 DFDVLSISRAILESITYSSC------DLKALNEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPL--MGAAPNSK 321 (1175)
Q Consensus 251 ~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l--~~~~~gs~ 321 (1175)
..+.....+..+++++.... +...-++..-.|.+.+...+-+++-|.--.. +...=+.+...+ .....|..
T Consensus 120 ~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~T 199 (228)
T COG4181 120 SADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTT 199 (228)
T ss_pred cccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCce
Confidence 34566777888888876542 2233445555678888899999998864211 111122222222 23456888
Q ss_pred EEEecCChhhhhhcC
Q 047556 322 IVVTTRHSHVASTME 336 (1175)
Q Consensus 322 iivTtr~~~v~~~~~ 336 (1175)
.++.|.++.++..|.
T Consensus 200 lVlVTHD~~LA~Rc~ 214 (228)
T COG4181 200 LVLVTHDPQLAARCD 214 (228)
T ss_pred EEEEeCCHHHHHhhh
Confidence 888899999998765
No 392
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.02 E-value=0.064 Score=54.92 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=60.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCc---cchHHHHHHHHHHh
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDL---KALNEVQVQLKKAV 286 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~l~~~l 286 (1175)
+++.|.|+.|.||||+.+.+..-.-. .....+|.+.. .. ..+...+...++...... .....-..++...+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~l----a~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIM----AQIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH----HHcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 78999999999999999888643211 11112222111 11 122333333333321111 11111111222222
Q ss_pred --cCccEEEEEecCccCC-ccc----HHHHhcccCCCCCCcEEEEecCChhhhhhcC
Q 047556 287 --DGKKIFLVLDDVWNED-YGL----WEDLKAPLMGAAPNSKIVVTTRHSHVASTME 336 (1175)
Q Consensus 287 --~~~r~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 336 (1175)
..++-|+++|...... ..+ ...+...+.. .|..+|+||.+.+++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 3568899999974321 111 1122333332 3789999999998887654
No 393
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.00 E-value=0.26 Score=52.60 Aligned_cols=88 Identities=11% Similarity=0.188 Sum_probs=48.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhc-
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYSSCDLKALNEVQVQLKKAVD- 287 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~- 287 (1175)
.+++++|.+|+||||+++.+......+ -..+.+++..... ....-++...+.++.+.....+.+.+...+...-+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 689999999999999999887643221 1245556554322 22233334444444332222334444444433211
Q ss_pred CccEEEEEecCcc
Q 047556 288 GKKIFLVLDDVWN 300 (1175)
Q Consensus 288 ~~r~LlVlDdv~~ 300 (1175)
++.-++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 3457889998743
No 394
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.99 E-value=0.057 Score=49.29 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=16.9
Q ss_pred EEEEccCCChHHHHHHHHhccc
Q 047556 212 IPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
|.|+|.+|+||||+|+.++...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6799999999999999999853
No 395
>PHA00729 NTP-binding motif containing protein
Probab=93.98 E-value=0.068 Score=54.65 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
No 396
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.13 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 397
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.97 E-value=0.29 Score=59.42 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=52.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSSCDLKALNEVQVQLKKAVD 287 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1175)
.+|++++|+.|+||||.+..++....... ....+..++.... ....+.++...+.++.+.....+.+++...+. .++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE-GADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc-CCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 47999999999999999988887543211 1234555554321 22445666666666655543344555544444 334
Q ss_pred CccEEEEEecCc
Q 047556 288 GKKIFLVLDDVW 299 (1175)
Q Consensus 288 ~~r~LlVlDdv~ 299 (1175)
++ -+|++|-.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 477778763
No 398
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.97 E-value=0.17 Score=51.71 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=38.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEE-------EeCCCCCHHHH--HHHHHHHhcCCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWV-------CVSEDFDVLSI--SRAILESITYSS 269 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~~s~~~~~~~~--~~~il~~l~~~~ 269 (1175)
.+..++.++||+|.||||..+.++.....+. ....++-. ......++++. +++.+++.+...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~-~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKK-TPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhcc-CCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 4567889999999999999999987655433 22222211 12233355443 457777766544
No 399
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.97 E-value=0.11 Score=50.45 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
|+.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998753
No 400
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.95 E-value=0.027 Score=33.90 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=12.2
Q ss_pred cccEEeccCccccccCchhhhc
Q 047556 649 NLQILLLRGCYYLLKLPSKMRK 670 (1175)
Q Consensus 649 ~L~~L~L~~~~~l~~lp~~i~~ 670 (1175)
+|++|||++| .++.+|.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3566666666 55566655443
No 401
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.93 E-value=0.35 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||++.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 402
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.93 E-value=0.36 Score=59.10 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=80.6
Q ss_pred ccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSP------SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLS 256 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (1175)
++.|.+...+++.+.+..... -+..-.+-|.++|++|.|||++|+.++..... .| +.++.+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~---~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---PF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---CE---EEEehHH------
Confidence 466766666555554322110 00011234899999999999999999875432 22 2222221
Q ss_pred HHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC----------cccHHHHhcc----cCCC--CCCc
Q 047556 257 ISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED----------YGLWEDLKAP----LMGA--APNS 320 (1175)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------~~~~~~l~~~----l~~~--~~gs 320 (1175)
+. ..... .........+...-...+.+|++|+++.-. ...++..... +... ..+.
T Consensus 221 ~~----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FV----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hH----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11 00000 111122223333334578999999985420 1122222222 2221 2344
Q ss_pred EEEEecCChhhhhh-c----CCCCeeeCCCCChhhhHHHHHhhhc
Q 047556 321 KIVVTTRHSHVAST-M----EPIQQYNLRCLSDEDCWSLFMMHAF 360 (1175)
Q Consensus 321 ~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~ 360 (1175)
-||.||...+.... . .-.+.+.+...+.++-.+++..+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 56667776654331 1 1346777888887777778777653
No 403
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.91 E-value=0.17 Score=51.84 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=28.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccc-------cceEEEEEeCCC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFK-------FDIKAWVCVSED 251 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~s~~ 251 (1175)
.++.|+|++|+||||++..+.......... -..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999998887654322111 236788887665
No 404
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.89 E-value=0.61 Score=48.28 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|.|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999998753
No 405
>PRK06762 hypothetical protein; Provisional
Probab=93.85 E-value=0.046 Score=54.38 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|.|+|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 406
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.82 E-value=0.31 Score=56.25 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=47.2
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE-DFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVD 287 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1175)
.+|++++|+.|+||||++..++.....+. ....+..|+... .....+-++...+.++.+.....+..+....+ ..++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-GASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-CCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 47999999999999999999987543221 112345555433 12333444555555554432222222222222 2334
Q ss_pred CccEEEEEecC
Q 047556 288 GKKIFLVLDDV 298 (1175)
Q Consensus 288 ~~r~LlVlDdv 298 (1175)
++ ..+++|-.
T Consensus 334 d~-d~VLIDTa 343 (484)
T PRK06995 334 NK-HIVLIDTI 343 (484)
T ss_pred CC-CeEEeCCC
Confidence 43 46677776
No 407
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.80 E-value=0.03 Score=53.71 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=23.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEV 235 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 235 (1175)
.||-++|.+|+||||||+++.+....
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999986543
No 408
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.77 E-value=0.19 Score=56.19 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=57.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVD 287 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1175)
.++=+-|||..|.|||.|.-.+|+....+. . .......+..++-+.+..-......+. .+.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l~----~va~~l~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-K----------RRVHFHEFMLDVHSRLHQLRGQDDPLP----QVADELA 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccc-c----------ccccccHHHHHHHHHHHHHhCCCccHH----HHHHHHH
Confidence 456789999999999999999998654321 0 111122333333333322111112222 3334455
Q ss_pred CccEEEEEecCccCCcccHHHHhcccCC-CCCCcEEEEecCChhh
Q 047556 288 GKKIFLVLDDVWNEDYGLWEDLKAPLMG-AAPNSKIVVTTRHSHV 331 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v 331 (1175)
++..||.||...-.+..+-.-+...+.. ...|. |||+|.|..-
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPP 169 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCCh
Confidence 7777999998754444332222222222 22344 6666655443
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.76 E-value=0.26 Score=55.97 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=47.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE-DFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
...+++++|+.|+||||++..+........ ..+.+..+.... .....+-+....+.++.+.....+..+....+. .+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-GADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-EL 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hh
Confidence 347999999999999999987765322111 123344444332 223334455555555555433333333333332 23
Q ss_pred cCccEEEEEecC
Q 047556 287 DGKKIFLVLDDV 298 (1175)
Q Consensus 287 ~~~r~LlVlDdv 298 (1175)
+++ -++++|-+
T Consensus 268 ~~~-d~VLIDTa 278 (420)
T PRK14721 268 RGK-HMVLIDTV 278 (420)
T ss_pred cCC-CEEEecCC
Confidence 443 45666765
No 410
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.75 E-value=0.44 Score=53.67 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999998764
No 411
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.75 E-value=0.1 Score=60.07 Aligned_cols=88 Identities=23% Similarity=0.264 Sum_probs=47.4
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEE-EEEeCCCCC-HHHHHHHHHHHhcCCCCCccc-----hHHHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKA-WVCVSEDFD-VLSISRAILESITYSSCDLKA-----LNEVQVQ 281 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~~-~~~~~~~il~~l~~~~~~~~~-----~~~~~~~ 281 (1175)
-.-+.|+|++|+|||||++.+++..... +-++.+ .+-+.+... +.++.+.+-..+-....+... .....-.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n--~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTN--NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhc--CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999854321 233333 344554432 223322220111111111111 1112223
Q ss_pred HHHHh--cCccEEEEEecC
Q 047556 282 LKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 282 l~~~l--~~~r~LlVlDdv 298 (1175)
+.+++ .++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 34444 689999999998
No 412
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.74 E-value=0.34 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|+|..|.|||||++.+....
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999987643
No 413
>PRK13949 shikimate kinase; Provisional
Probab=93.70 E-value=0.35 Score=47.90 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
-|.|+|++|+||||+++.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999854
No 414
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.14 Score=50.26 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=62.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
.+++|+|..|.|||||++.+...... ....+++.-...... ........++.-. +...-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~----~~G~i~~~~~~~~~~--~~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP----TSGEILIDGKDIAKL--PLEELRRRIGYVP-QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCEEcccC--CHHHHHhceEEEe-eCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999875432 233444432111110 0011111222111 0122223333455566667
Q ss_pred cEEEEEecCccC-CcccHHHHhcccCCC-CCCcEEEEecCChhhhhh
Q 047556 290 KIFLVLDDVWNE-DYGLWEDLKAPLMGA-APNSKIVVTTRHSHVAST 334 (1175)
Q Consensus 290 r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 334 (1175)
+-++++|+.... |......+...+... ..+..||++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 889999997532 222333333333221 125678888887776554
No 415
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.69 E-value=0.38 Score=50.82 Aligned_cols=90 Identities=14% Similarity=0.205 Sum_probs=56.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccc-cccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCccchHH---
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEV-ETFKFDIKAWVCVSEDF-DVLSISRAILESITYSS-------CDLKALNE--- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~--- 277 (1175)
+-++|.|..|+|||+|+..+.++... +...-+.++++-+++.. ...++..++.+.=.... .+......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 56899999999999999998876431 11135678888887664 45666666655321111 11111111
Q ss_pred --HHHHHHHHhc---CccEEEEEecCc
Q 047556 278 --VQVQLKKAVD---GKKIFLVLDDVW 299 (1175)
Q Consensus 278 --~~~~l~~~l~---~~r~LlVlDdv~ 299 (1175)
..-.+.++++ ++++|+++||+.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1123455652 689999999993
No 416
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.69 E-value=0.33 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 417
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.65 E-value=0.25 Score=55.85 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=52.8
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCccchHH---
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYSS-------CDLKALNE--- 277 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~--- 277 (1175)
...++|+|..|+|||||++.+.... ..+.++.+-+++.. ...++.++++..-+... .+......
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 3679999999999999999998642 23566667676654 34556666544322111 11111111
Q ss_pred --HHHHHHHHh--cCccEEEEEecC
Q 047556 278 --VQVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 278 --~~~~l~~~l--~~~r~LlVlDdv 298 (1175)
..-.+.+++ +++.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 112244555 689999999999
No 418
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.64 E-value=0.12 Score=56.03 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=50.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----ccchHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCD-----LKALNEVQVQ 281 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~~~ 281 (1175)
+..+++-|+|+.|+||||||..+....+. .-..++||+....++.. .+++++.+.+. ....++....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHH
Confidence 45589999999999999999988875433 33568999988877664 34455544321 1223444444
Q ss_pred HHHHhc-CccEEEEEecC
Q 047556 282 LKKAVD-GKKIFLVLDDV 298 (1175)
Q Consensus 282 l~~~l~-~~r~LlVlDdv 298 (1175)
+.+.++ +.--++|+|-|
T Consensus 123 ~e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHHTTSESEEEEE-C
T ss_pred HHHHhhcccccEEEEecC
Confidence 444443 34458888987
No 419
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.63 E-value=0.079 Score=55.79 Aligned_cols=44 Identities=27% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF 252 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 252 (1175)
+...++.|.|.+|+|||++|.++....-.+ .=..++||+...+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP 60 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH
Confidence 445799999999999999998876543221 03467888876543
No 420
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.61 E-value=0.33 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||++.++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 421
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.61 E-value=0.8 Score=49.13 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=71.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccc-----------ccccceEEEEE-eCCCCCHHHHH
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVE-----------TFKFDIKAWVC-VSEDFDVLSIS 258 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~f~~~~wv~-~s~~~~~~~~~ 258 (1175)
-+++...+..+ .-.....++|+.|+||+++|.+++...-.. +.|.|.. |+. ....
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~-~i~p~~~~------- 72 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIH-EFSPQGKG------- 72 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEE-EEecCCCC-------
Confidence 34555666543 234578899999999999998877642110 0011211 111 0000
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC-hhhh
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-SHVA 332 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 332 (1175)
..-..++. +.+.+.+ .+++-++|+|+++.-..+.+..+...+.....++.+|++|.+ ..+.
T Consensus 73 ------------~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll 139 (290)
T PRK05917 73 ------------RLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLP 139 (290)
T ss_pred ------------CcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCc
Confidence 00112222 2222222 356678999999777777888888888766666666555554 4444
Q ss_pred hhc-CCCCeeeCCCC
Q 047556 333 STM-EPIQQYNLRCL 346 (1175)
Q Consensus 333 ~~~-~~~~~~~l~~L 346 (1175)
... .-...+.+.++
T Consensus 140 ~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 140 PTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHhcceEEEccch
Confidence 322 22345556554
No 422
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.3 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+++|+|..|.|||||++.++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999985
No 423
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.59 E-value=0.34 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||++.+...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 68999999999999999998764
No 424
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.57 E-value=0.55 Score=47.37 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|+|..|.|||||.+.+....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998753
No 425
>PRK05973 replicative DNA helicase; Provisional
Probab=93.52 E-value=0.35 Score=50.36 Aligned_cols=48 Identities=13% Similarity=0.040 Sum_probs=32.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
...++.|.|.+|+|||++|.++...... .-..+++++.... ...+...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~---~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMK---SGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEEeCC--HHHHHHH
Confidence 3378999999999999999988765322 2235667766554 3444443
No 426
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.52 E-value=0.083 Score=57.29 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=44.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..|+|.++.++++++.+.....+...+-+|+.+.|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999987655443667999999999999999999987743
No 427
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.51 E-value=0.96 Score=59.63 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=23.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEV 235 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 235 (1175)
..+=|.++|++|.|||.||++++.+..+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3456889999999999999999987543
No 428
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.48 E-value=0.3 Score=56.70 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED 251 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 251 (1175)
+..+.+.|..+- ..-.++.|.|.+|+|||||+.+++..... .-..++|++....
T Consensus 66 i~~LD~~LgGGi----~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees 119 (446)
T PRK11823 66 IGELDRVLGGGL----VPGSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEES 119 (446)
T ss_pred cHHHHHHhcCCc----cCCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcccc
Confidence 445555554432 33479999999999999999999875432 2235788876543
No 429
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.48 E-value=0.45 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998864
No 430
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.48 E-value=0.11 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.|.|+|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 431
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.44 E-value=0.5 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||++.+.-.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 432
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.41 E-value=0.56 Score=48.83 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|+|..|.|||||++.+....
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998653
No 433
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.39 E-value=0.38 Score=54.75 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=48.4
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCC-----C-CCccchHH-----H
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYS-----S-CDLKALNE-----V 278 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~-----~-~~~~~~~~-----~ 278 (1175)
..++|+|..|+|||||++.+...... ...+++..--...++..+....+...... . .+...... .
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~p----d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADAF----DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC----CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 68999999999999999998864321 22344443223445555544444432111 0 11111111 1
Q ss_pred HHHHHHHh--cCccEEEEEecC
Q 047556 279 QVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 279 ~~~l~~~l--~~~r~LlVlDdv 298 (1175)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12344444 589999999998
No 434
>PRK03839 putative kinase; Provisional
Probab=93.38 E-value=0.056 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999854
No 435
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.34 E-value=0.24 Score=52.07 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=38.9
Q ss_pred EEEEEEccCCChHHHHHHHHhccccc-cc------cccceEEEEEeCC-CCCHHHHHHHHHHHhcCCC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEV-ET------FKFDIKAWVCVSE-DFDVLSISRAILESITYSS 269 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~------~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~ 269 (1175)
-++.|+|.||+|||||+...+=.... +. .....+++|++.. ..++..-++.+..+++.+.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 35667799999999998654422110 00 0345678888753 3466677778888887754
No 436
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.34 E-value=0.046 Score=49.46 Aligned_cols=22 Identities=55% Similarity=0.676 Sum_probs=19.1
Q ss_pred EEEEccCCChHHHHHHHHhccc
Q 047556 212 IPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988753
No 437
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.31 E-value=0.15 Score=48.12 Aligned_cols=84 Identities=17% Similarity=0.345 Sum_probs=54.6
Q ss_pred HHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCch-hhhc
Q 047556 593 FSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPS-KMRK 670 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~ 670 (1175)
....|..+++|+.+.+.++ +..++...|.++..|+++.+.+ .+..++. .+..+.+|+.+++..+ +..++. .+.+
T Consensus 27 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~ 102 (129)
T PF13306_consen 27 GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSN 102 (129)
T ss_dssp -TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT
T ss_pred Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcC
Confidence 4456889999999999875 8888888899998999999976 6666655 4667999999999764 445543 3666
Q ss_pred cCCCceeeecC
Q 047556 671 LINLRHLDITG 681 (1175)
Q Consensus 671 L~~L~~L~l~~ 681 (1175)
. +|+.+.+..
T Consensus 103 ~-~l~~i~~~~ 112 (129)
T PF13306_consen 103 C-NLKEINIPS 112 (129)
T ss_dssp --T--EEE-TT
T ss_pred C-CceEEEECC
Confidence 6 888888765
No 438
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.30 E-value=0.089 Score=57.10 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=82.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCC-----------CCCcEEEEEEccCCChHHHHHHHHhcccccccc---ccc-eEEEE-
Q 047556 183 TVFGRHQDKAKILEMVSANSPSG-----------HANIAVIPIVGMGGIGKTTLAREVYNDKEVETF---KFD-IKAWV- 246 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~-~~~wv- 246 (1175)
+..|-..+...|.+.+....... -..--+++|+|..|+||||+.+++......... ..+ ..+=|
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 34566677788877765432110 022358999999999999999988754321110 000 11111
Q ss_pred ----Ee------CCCCCHHHHHHH-------------HHHHhcCCCC--------CccchHHHHHHHHHHhcCccEEEEE
Q 047556 247 ----CV------SEDFDVLSISRA-------------ILESITYSSC--------DLKALNEVQVQLKKAVDGKKIFLVL 295 (1175)
Q Consensus 247 ----~~------s~~~~~~~~~~~-------------il~~l~~~~~--------~~~~~~~~~~~l~~~l~~~r~LlVl 295 (1175)
.+ ...++-..+++. ++...+.... +..+...-..+|.+.+.++.-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 11 111221123222 2222222210 1122223334677778888889999
Q ss_pred ecCccCCcccHH--HHhcccCC--CCCCcEEEEecCChhhhhhcCCCCeeeC
Q 047556 296 DDVWNEDYGLWE--DLKAPLMG--AAPNSKIVVTTRHSHVASTMEPIQQYNL 343 (1175)
Q Consensus 296 Ddv~~~~~~~~~--~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~~~~~~l 343 (1175)
|..... .+... .+...+.. ...|+.+++.|+.+++.+++.++..+-+
T Consensus 532 DEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~v 582 (593)
T COG2401 532 DEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILV 582 (593)
T ss_pred hhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEe
Confidence 986321 11111 11222221 1257788888888998888776654433
No 439
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.29 E-value=0.42 Score=55.55 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC
Q 047556 188 HQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE 250 (1175)
Q Consensus 188 ~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 250 (1175)
..-+..+.+.|..+- ..-.++.|.|.+|+|||||+.++....... -..++|++...
T Consensus 77 ~TGi~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EE 132 (454)
T TIGR00416 77 SSGFGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEE 132 (454)
T ss_pred ccCcHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcC
Confidence 344566666665433 344899999999999999999987653321 13577887654
No 440
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.29 E-value=0.29 Score=59.64 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQ 281 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~ 281 (1175)
+.-+++-|+|.+|+||||||.+++..... .-..++|+.....++. ..+++++.+.. .....++....
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~---~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~ 129 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQA---AGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEI 129 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHH
Confidence 44589999999999999999876654322 2346799988877774 36677766532 12233444444
Q ss_pred HHHHhc-CccEEEEEecCc
Q 047556 282 LKKAVD-GKKIFLVLDDVW 299 (1175)
Q Consensus 282 l~~~l~-~~r~LlVlDdv~ 299 (1175)
+...++ ++.-|||+|-+-
T Consensus 130 i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 130 ADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHhhcCCCeEEEEcchh
Confidence 555443 467789999973
No 441
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.29 E-value=0.53 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||++.+...
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 442
>PRK04040 adenylate kinase; Provisional
Probab=93.27 E-value=0.065 Score=54.11 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+|+|+|++|+||||+++.+.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
No 443
>PRK14527 adenylate kinase; Provisional
Probab=93.25 E-value=0.093 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
...++.|+|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998754
No 444
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.21 E-value=0.096 Score=50.95 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=22.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.++.|.|+.|+|||||+++++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 789999999999999999999853
No 445
>PRK00625 shikimate kinase; Provisional
Probab=93.21 E-value=0.057 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.|.++||+|+||||+|+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998753
No 446
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.17 E-value=0.61 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|+|..|.|||||++.+....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 699999999999999999988653
No 447
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.16 E-value=0.42 Score=50.79 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=63.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcccccc-c-cccc--eEEEEEeCC----CCCHHHHH--------------HHHHHHhcC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVE-T-FKFD--IKAWVCVSE----DFDVLSIS--------------RAILESITY 267 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~-~~f~--~~~wv~~s~----~~~~~~~~--------------~~il~~l~~ 267 (1175)
.+++|+|..|+|||||++.+....... + -.++ .+.++.-.. ..++.+.+ .++++.++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 689999999999999999998753221 1 0111 122222110 11222222 223333322
Q ss_pred CCC------CccchHHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCC--CCCcEEEEecCChhhhhh
Q 047556 268 SSC------DLKALNEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGA--APNSKIVVTTRHSHVAST 334 (1175)
Q Consensus 268 ~~~------~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~ 334 (1175)
... ....-+...-.+...+..++-++++|+-... +......+...+... ..|..||++|.+...+..
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 210 0111112223355666778889999987432 222233333333322 236678888888766543
No 448
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.16 E-value=0.59 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998864
No 449
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.15 E-value=0.47 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 68999999999999999998875
No 450
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.14 E-value=0.1 Score=49.71 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=28.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE 250 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 250 (1175)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~--g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR--GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc--CCceEEEEEccC
Confidence 479999999999999999999876543 455555666554
No 451
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.13 E-value=0.52 Score=49.99 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=35.0
Q ss_pred HHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCCCCCcEEEEecCChhhhhhcCCCCeeeC
Q 047556 281 QLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTMEPIQQYNL 343 (1175)
Q Consensus 281 ~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 343 (1175)
.+...+-.++-++++|+.... +....+.+...+.....|..||++|.+...... ..+.+.+
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 345566678889999987542 223333344433322226678888887776643 3344444
No 452
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.10 E-value=0.83 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.++--
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999998754
No 453
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.09 E-value=0.48 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|.|..|+|||||++.+....
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998753
No 454
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.06 E-value=0.44 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||.+.++.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999864
No 455
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.04 E-value=0.72 Score=48.62 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||.+.+...
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999864
No 456
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.03 E-value=0.15 Score=54.47 Aligned_cols=51 Identities=27% Similarity=0.396 Sum_probs=39.1
Q ss_pred CCccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccc
Q 047556 181 ERTVFGRHQDKA---KILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEV 235 (1175)
Q Consensus 181 ~~~~vgr~~~~~---~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 235 (1175)
...+||..+..+ -++++..+..-.| +.|.++|++|.|||+||..+.+....
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aG----rgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAG----RGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccc----cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 456899766544 4677777665434 88999999999999999999987543
No 457
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.98 E-value=0.52 Score=48.45 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999988764
No 458
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.98 E-value=0.22 Score=59.35 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..++|....+.++++.+..-... -..|.|+|..|+||+++|+++...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~----~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAML----DAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCC----CCCEEEECCCCccHHHHHHHHHHh
Confidence 36899988888888766533221 134789999999999999998764
No 459
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.95 E-value=0.16 Score=61.06 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=57.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.... . .++..+|..- ...+...+++.+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l~~-~-~~~~~~~~~n-p~~~~~~~~~~v 99 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELLPK-E-ELQDILVYPN-PEDPNNPKIRTV 99 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHcCh-H-hHHHheEeeC-CCcchHHHHHHH
Confidence 46899998888888777542 36889999999999999999875321 2 4577788655 455777888888
Q ss_pred HHHhcCC
Q 047556 262 LESITYS 268 (1175)
Q Consensus 262 l~~l~~~ 268 (1175)
+.+++..
T Consensus 100 ~~~~G~~ 106 (637)
T PRK13765 100 PAGKGKQ 106 (637)
T ss_pred HHhcCHH
Confidence 8766654
No 460
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.93 E-value=2.9 Score=46.05 Aligned_cols=49 Identities=20% Similarity=0.125 Sum_probs=32.6
Q ss_pred eeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 340 QYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 340 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
+++|++++.+|+..++....-.+--.. ....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999887663322211 1222334566777779998644
No 461
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.93 E-value=0.23 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEccCCChHHHHHHHHhcccc
Q 047556 212 IPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
+++.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999986543
No 462
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.92 E-value=0.087 Score=65.48 Aligned_cols=187 Identities=14% Similarity=0.120 Sum_probs=85.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC---CccchHHHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC---DLKALNEVQVQLKK 284 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~ 284 (1175)
..+++.|+|+.+.||||+.+.+.--.- -..+-.+|++.... ...++..|...++.... .......-...+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~----maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAAL----MAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHH----HHHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 347899999999999999988753210 01111222222110 00111111111111110 00111111122222
Q ss_pred Hhc--CccEEEEEecCccC-CcccHHHH----hcccCCCCCCcEEEEecCChhhhhhcCCCCeeeCCCCC-hhhhHHHHH
Q 047556 285 AVD--GKKIFLVLDDVWNE-DYGLWEDL----KAPLMGAAPNSKIVVTTRHSHVASTMEPIQQYNLRCLS-DEDCWSLFM 356 (1175)
Q Consensus 285 ~l~--~~r~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~-~~e~~~lf~ 356 (1175)
.+. ..+-|+++|..... +..+-..+ ...+. ..|+.+|+||...++.........+.-..+. +++... +.
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~-~~ 477 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLR-PT 477 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCc-EE
Confidence 222 47789999998543 22222223 22222 2478999999998876644322111110111 111111 11
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCHHHHHHHHh
Q 047556 357 MHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSKRHDAWDEILN 409 (1175)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~ 409 (1175)
..... +.+. ..-|-+|++++ |+|-.+..-|..+......+...++.
T Consensus 478 Ykl~~-G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~ 523 (782)
T PRK00409 478 YRLLI-GIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIA 523 (782)
T ss_pred EEEee-CCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHH
Confidence 11111 1111 12355677776 78888877777776554444544443
No 463
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.90 E-value=0.5 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|.|..|.|||||.+.+..-.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998753
No 464
>PRK08149 ATP synthase SpaL; Validated
Probab=92.90 E-value=0.49 Score=53.79 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=51.3
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC-CCCHHHHHHHHHHHhcCCC-------CCccchH-----
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE-DFDVLSISRAILESITYSS-------CDLKALN----- 276 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~-------~~~~~~~----- 276 (1175)
..++|+|..|+|||||++.++.... .+.++...+.. ..++..+..+.+....... .+.....
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 6889999999999999999987432 23444444443 3355566666665432211 1111111
Q ss_pred HHHHHHHHHh--cCccEEEEEecCc
Q 047556 277 EVQVQLKKAV--DGKKIFLVLDDVW 299 (1175)
Q Consensus 277 ~~~~~l~~~l--~~~r~LlVlDdv~ 299 (1175)
.....+.+++ +++++|+++||+-
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchH
Confidence 1122334444 5899999999993
No 465
>PHA02774 E1; Provisional
Probab=92.89 E-value=0.29 Score=56.79 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEe
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCV 248 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 248 (1175)
+..+..++... ++-..+.|+|++|+|||.+|..+.+-.. -..+.||+.
T Consensus 421 l~~lk~~l~~~-----PKknciv~~GPP~TGKS~fa~sL~~~L~-----G~vi~fvN~ 468 (613)
T PHA02774 421 LTALKDFLKGI-----PKKNCLVIYGPPDTGKSMFCMSLIKFLK-----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEEEC
Confidence 44555555332 3446899999999999999999987431 234556664
No 466
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=0.44 Score=49.48 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+++|+|+.|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999854
No 467
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.85 E-value=0.14 Score=51.61 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=28.6
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.|+|+|-||+||||+|.......-.++ .| .+.-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~-~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKG-GY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcC-Cc-eEEEEeCCCCCChH
Confidence 589999999999999988554432222 23 34556666665543
No 468
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.84 E-value=0.38 Score=55.03 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=54.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCccchHH----
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYSS-------CDLKALNE---- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~---- 277 (1175)
.-++|.|..|+|||||+.++....... +-+.++++-+++.. .+.++++++...-.... .+......
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~--~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE--HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 678999999999999999887653321 22456777776554 55667776665322111 11111111
Q ss_pred -HHHHHHHHh---cCccEEEEEecC
Q 047556 278 -VQVQLKKAV---DGKKIFLVLDDV 298 (1175)
Q Consensus 278 -~~~~l~~~l---~~~r~LlVlDdv 298 (1175)
..-.+.+++ +++.+|+++|++
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 122355665 679999999999
No 469
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.84 E-value=1.3 Score=45.69 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|.|+.|.|||||++.+..-.
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcC
Confidence 689999999999999999998753
No 470
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.82 E-value=0.19 Score=56.35 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=47.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
.++|+++.+..+...+... +-+.+.|.+|+|||+||+.++.... ...++|.+.......+++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCch
Confidence 4888888888887777654 4588999999999999999998432 234667777776666655433
No 471
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=92.82 E-value=0.12 Score=47.09 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=41.9
Q ss_pred EEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccE
Q 047556 212 IPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKI 291 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~ 291 (1175)
..|.|.+|+|||+|+..+..+ +|....-.+.+-++.+..+--. -.......++....+........+.++...
T Consensus 11 llIigDsgVGKssLl~rF~dd------tFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADD------TFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred HHeecCCcccHHHHHHHHhhc------ccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 357899999999999999876 3333222222211111000000 000111112222233333444556678888
Q ss_pred EEEEecCcc
Q 047556 292 FLVLDDVWN 300 (1175)
Q Consensus 292 LlVlDdv~~ 300 (1175)
++|+=||-+
T Consensus 84 v~vVYDVTn 92 (198)
T KOG0079|consen 84 VIVVYDVTN 92 (198)
T ss_pred EEEEEECcc
Confidence 888888854
No 472
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=1.4 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
|=-.++|++|.|||++..++++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 346789999999999999999854
No 473
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.75 E-value=0.25 Score=52.83 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+..++.|.|.+|+|||||+..+.+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998754
No 474
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.74 E-value=0.069 Score=29.71 Aligned_cols=14 Identities=43% Similarity=0.639 Sum_probs=4.5
Q ss_pred ccEEEecccccccc
Q 047556 627 LRYLNLSHTWIRNL 640 (1175)
Q Consensus 627 L~~L~L~~~~i~~l 640 (1175)
|+.|+|++|.++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 34444444443333
No 475
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.72 E-value=0.46 Score=54.10 Aligned_cols=85 Identities=25% Similarity=0.314 Sum_probs=50.7
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCC-------CCCccchHHH--
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYS-------SCDLKALNEV-- 278 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~~-- 278 (1175)
-..++|+|..|+|||||++.+.... ..+..+++.++.. ..+.+++.+....-... ..+.......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 3688999999999999999998743 3444566656554 34445555543311000 0111111111
Q ss_pred ---HHHHHHHh--cCccEEEEEecC
Q 047556 279 ---QVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 279 ---~~~l~~~l--~~~r~LlVlDdv 298 (1175)
.-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 12244555 588999999999
No 476
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.70 E-value=0.087 Score=54.01 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEccCCChHHHHHHHHhcc
Q 047556 212 IPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~ 232 (1175)
|.|.|++|+||||+|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 477
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.68 E-value=0.071 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 478
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.67 E-value=0.38 Score=43.90 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=32.6
Q ss_pred ccccchhhHHHHH----HHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 183 TVFGRHQDKAKIL----EMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 183 ~~vgr~~~~~~l~----~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.++|.+-..+.+. ..+..... .++-|++.+|++|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p---~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNP---RKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCC---CCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4566554444444 44443322 67789999999999999998887765
No 479
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.64 E-value=0.67 Score=53.01 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=53.9
Q ss_pred EEEEEEccCCChHHHHH-HHHhccccc-----cccccceEEEEEeCCCCCHHHHHHHHHHHhcC-CC-------CCccch
Q 047556 210 AVIPIVGMGGIGKTTLA-REVYNDKEV-----ETFKFDIKAWVCVSEDFDVLSISRAILESITY-SS-------CDLKAL 275 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa-~~v~~~~~~-----~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~-~~-------~~~~~~ 275 (1175)
.-++|.|..|+|||+|| ..+.++... .. .-+.++++-+++......-+.+.++.-+. .. .+....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~-~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSK-NAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccC-CCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 67899999999999997 556665322 12 34567888888876554445555554441 11 011111
Q ss_pred HH-----HHHHHHHHh--cCccEEEEEecCc
Q 047556 276 NE-----VQVQLKKAV--DGKKIFLVLDDVW 299 (1175)
Q Consensus 276 ~~-----~~~~l~~~l--~~~r~LlVlDdv~ 299 (1175)
.+ ..-.+.+++ +++.+|+|+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 11 112334444 5799999999994
No 480
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.63 E-value=0.55 Score=53.47 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=51.8
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCccchHH---
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYSS-------CDLKALNE--- 277 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~--- 277 (1175)
...++|+|..|+|||||++.+++... .+.++++-++... ...++..+.+..-+... .+......
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~-----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD-----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 36889999999999999999987532 3455566666554 34455555544322111 11111111
Q ss_pred --HHHHHHHHh--cCccEEEEEecC
Q 047556 278 --VQVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 278 --~~~~l~~~l--~~~r~LlVlDdv 298 (1175)
..-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 112344555 589999999999
No 481
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.62 E-value=0.34 Score=55.07 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=22.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
...+|.++|..|+||||+|..++...+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 358999999999999999988876443
No 482
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.61 E-value=0.029 Score=54.85 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=50.1
Q ss_pred hccCCCCCCCeeEeccCCCccccccchhhhh--ccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCC
Q 047556 1042 WGLHRLTSLRRLWIEGCDDDEAECFPDEEMR--MMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLK 1116 (1175)
Q Consensus 1042 ~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~--~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~ 1116 (1175)
..+.++++++.|.+.+|.. |.++... ....++|+.|+|++|+++++-...++..+++|+.|.|.+.+.+.
T Consensus 119 e~L~~l~~i~~l~l~~ck~-----~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKY-----FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHhccchhhhheeccccc-----hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 3567788888888888653 3333321 13557899999999999888766677788888888888755443
No 483
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.60 E-value=0.47 Score=57.04 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=59.9
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcC---CCCCccchHHHHHHHHHHh
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITY---SSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~---~~~~~~~~~~~~~~l~~~l 286 (1175)
++..|.|.+|.||||++..+..........-...+.+......-...+.+.+-..+.. ..............+.+.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 6899999999999999988876432111011245555555444444444433322211 1000000000111222222
Q ss_pred c------------Ccc---EEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhh
Q 047556 287 D------------GKK---IFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVA 332 (1175)
Q Consensus 287 ~------------~~r---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 332 (1175)
. +.+ -++|+|.+--.+......+...++ +++|+|+---..+.+
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQLA 305 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhhcC
Confidence 1 111 389999984444444445555554 567888776544443
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.56 E-value=0.074 Score=54.68 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+|+|.|..|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 485
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.55 E-value=0.51 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHhc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 37999999999999999999886
No 486
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.53 E-value=0.14 Score=60.13 Aligned_cols=60 Identities=13% Similarity=0.307 Sum_probs=44.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEE
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVC 247 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 247 (1175)
.+++--.+-++++..||...-... ...+++.+.|++|+||||.++.++++. .|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~-~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGS-SPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccC-CCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 345555667788888887543222 445799999999999999999999853 467777864
No 487
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.53 E-value=0.11 Score=55.61 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
+.|.|+|.+|+||||+|+++.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999987543
No 488
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.53 E-value=0.091 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..|.++|++|+||||+|++++...
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999853
No 489
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.52 E-value=0.09 Score=53.01 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999987753
No 490
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.48 E-value=0.51 Score=53.66 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=48.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC-CCCHHHHHHHHHHHhcCCC-------CCccchHH----
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE-DFDVLSISRAILESITYSS-------CDLKALNE---- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~-------~~~~~~~~---- 277 (1175)
..++|+|..|+|||||++.+....+. +..+.+.+.. .....++.++.+..-+... .+......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~~-----~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTDA-----DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC-----CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 67999999999999999999875322 2222233333 3345555555544322111 11111111
Q ss_pred -HHHHHHHHh--cCccEEEEEecC
Q 047556 278 -VQVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 278 -~~~~l~~~l--~~~r~LlVlDdv 298 (1175)
..-.+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 112345555 578999999998
No 491
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.47 E-value=0.089 Score=50.36 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.7
Q ss_pred EEEEEccCCChHHHHHHHHh
Q 047556 211 VIPIVGMGGIGKTTLAREVY 230 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~ 230 (1175)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 492
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.45 E-value=0.73 Score=50.30 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=36.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAIL 262 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il 262 (1175)
..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 588999999999999999999852 34578888887654 4556666543
No 493
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.44 E-value=0.31 Score=51.51 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=49.2
Q ss_pred EEEEEEccCCChHHHHH-HHHhccccccccccceE-EEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCccchHH--
Q 047556 210 AVIPIVGMGGIGKTTLA-REVYNDKEVETFKFDIK-AWVCVSEDF-DVLSISRAILESITYSS-------CDLKALNE-- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~-- 277 (1175)
+-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+++.. ...++.+++.+.-.... .+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 67899999999999996 6666532 23344 666666654 45566666654321110 11111111
Q ss_pred ---HHHHHHHHh--cCccEEEEEecCc
Q 047556 278 ---VQVQLKKAV--DGKKIFLVLDDVW 299 (1175)
Q Consensus 278 ---~~~~l~~~l--~~~r~LlVlDdv~ 299 (1175)
..-.+.+++ +++.+|+|+||+.
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 112233333 5799999999993
No 494
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.44 E-value=0.98 Score=47.92 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998754
No 495
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.44 E-value=0.11 Score=49.28 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.++++|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 489999999999999999887664
No 496
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.43 E-value=0.39 Score=56.73 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=43.5
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 047556 190 DKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 190 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 267 (1175)
-+..+.++|..+- ..-.++.|.|++|+|||||+.++...... .-..+++++..+. ...+.+. ++.++.
T Consensus 248 Gi~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s~eEs--~~~i~~~-~~~lg~ 315 (484)
T TIGR02655 248 GVVRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLENACA---NKERAILFAYEES--RAQLLRN-AYSWGI 315 (484)
T ss_pred ChHhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCC--HHHHHHH-HHHcCC
Confidence 4556666665543 34489999999999999999998875422 2245677765543 3444433 244443
No 497
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=92.43 E-value=0.6 Score=58.66 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..++|+|..|.|||||++.+..-
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999998754
No 498
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.40 E-value=0.69 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 69999999999999999999854
No 499
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.40 E-value=0.29 Score=56.12 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=55.4
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCccchH-----
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYSS-------CDLKALN----- 276 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~----- 276 (1175)
.-++|.|.+|+|||||+.++.+.... . +-+.++++-+++.. ...++..++...-.... .+.....
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-Q-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-h-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 67899999999999999888875432 2 46777888777554 45566666654321111 1111111
Q ss_pred HHHHHHHHHh---cCccEEEEEecC
Q 047556 277 EVQVQLKKAV---DGKKIFLVLDDV 298 (1175)
Q Consensus 277 ~~~~~l~~~l---~~~r~LlVlDdv 298 (1175)
...-.+.+++ .++.+|+++|++
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 1223355666 379999999999
No 500
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=0.34 Score=49.22 Aligned_cols=50 Identities=30% Similarity=0.248 Sum_probs=35.2
Q ss_pred ccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 183 TVFGRHQDKAKILEMVSANSP-------SGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
++=|-.++++++.+...-+-- -|-+..+-|.++|++|.|||-+|++|++.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 345667778887776543210 01144567889999999999999999984
Done!