Query 047556
Match_columns 1175
No_of_seqs 708 out of 5006
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 21:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.7E-46 1.3E-50 446.8 22.1 316 185-523 131-473 (549)
2 3rgz_A Protein brassinosteroid 100.0 7E-39 2.4E-43 402.7 15.1 536 596-1160 121-766 (768)
3 1vt4_I APAF-1 related killer D 100.0 9.9E-38 3.4E-42 372.2 19.7 284 183-514 129-436 (1221)
4 3sfz_A APAF-1, apoptotic pepti 100.0 7.5E-36 2.6E-40 400.9 26.3 311 179-521 121-452 (1249)
5 3rgz_A Protein brassinosteroid 100.0 1.1E-35 3.9E-40 373.5 25.5 513 595-1136 94-715 (768)
6 1ziw_A TOLL-like receptor 3; i 100.0 1E-34 3.5E-39 362.4 32.9 556 536-1137 25-621 (680)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-32 5.2E-37 342.8 34.2 515 593-1136 41-595 (680)
8 1z6t_A APAF-1, apoptotic prote 100.0 5.6E-33 1.9E-37 339.3 24.5 304 181-519 123-450 (591)
9 3vq2_A TLR4, TOLL-like recepto 100.0 5E-32 1.7E-36 333.4 29.1 352 594-1008 73-458 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-32 9.2E-37 335.9 24.4 503 561-1137 32-557 (606)
11 3t6q_A CD180 antigen; protein- 100.0 1.6E-31 5.4E-36 329.0 29.5 472 594-1136 50-558 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-30 9.9E-35 327.9 32.6 486 595-1136 42-558 (844)
13 3t6q_A CD180 antigen; protein- 100.0 2E-30 6.9E-35 319.1 28.4 502 601-1167 33-560 (606)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2E-30 6.9E-35 315.2 27.7 457 601-1113 26-508 (549)
15 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-28 3.8E-33 313.4 36.3 499 599-1166 22-559 (844)
16 4eco_A Uncharacterized protein 100.0 8.7E-30 3E-34 312.2 21.1 60 781-843 302-363 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 3.7E-29 1.3E-33 304.0 23.1 478 600-1136 4-508 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 6.4E-29 2.2E-33 307.9 24.3 62 779-844 543-606 (876)
19 2z63_A TOLL-like receptor 4, v 100.0 1.2E-28 4.1E-33 301.3 25.5 126 595-721 46-175 (570)
20 4ecn_A Leucine-rich repeat pro 100.0 5.4E-29 1.9E-33 308.6 21.7 171 635-844 435-630 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-28 8.5E-33 294.3 26.3 430 601-1136 21-479 (520)
22 2z63_A TOLL-like receptor 4, v 100.0 3.2E-28 1.1E-32 297.5 27.1 470 601-1136 28-529 (570)
23 4eco_A Uncharacterized protein 100.0 6.7E-29 2.3E-33 304.3 18.0 356 593-1036 198-602 (636)
24 2z7x_B TOLL-like receptor 1, v 99.9 8.9E-27 3E-31 280.7 25.9 432 561-1113 21-479 (520)
25 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-25 3.7E-30 279.5 35.9 493 602-1136 53-578 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.7E-26 3.3E-30 273.7 29.0 445 602-1136 32-508 (562)
27 1jl5_A Outer protein YOPM; leu 99.9 1E-25 3.5E-30 263.2 26.6 404 599-1136 9-427 (454)
28 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-25 5.1E-30 278.2 29.3 491 592-1113 67-578 (635)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.8E-25 3.3E-29 264.9 28.3 421 593-1113 68-508 (562)
30 3v47_A TOLL-like receptor 5B a 99.9 3.8E-24 1.3E-28 253.1 23.1 109 601-709 30-142 (455)
31 3v47_A TOLL-like receptor 5B a 99.9 4.1E-24 1.4E-28 252.9 23.3 384 603-1114 12-407 (455)
32 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.1E-28 244.9 25.9 368 623-1138 9-409 (454)
33 1o6v_A Internalin A; bacterial 99.9 1.4E-23 4.9E-28 248.0 25.3 187 600-843 45-231 (466)
34 3bz5_A Internalin-J, INLJ; leu 99.9 7E-24 2.4E-28 247.9 21.6 104 596-709 37-140 (457)
35 3bz5_A Internalin-J, INLJ; leu 99.9 5.6E-23 1.9E-27 240.2 21.0 306 619-1059 36-350 (457)
36 1o6v_A Internalin A; bacterial 99.9 4.2E-22 1.4E-26 235.4 26.0 350 622-1120 43-392 (466)
37 3o6n_A APL1; leucine-rich repe 99.9 1.2E-21 3.9E-26 226.2 22.8 102 599-701 43-146 (390)
38 4fmz_A Internalin; leucine ric 99.9 9.3E-22 3.2E-26 223.3 21.1 102 597-705 40-141 (347)
39 2id5_A Lingo-1, leucine rich r 99.9 4E-21 1.4E-25 228.4 26.2 86 993-1087 243-330 (477)
40 2id5_A Lingo-1, leucine rich r 99.9 1.8E-21 6.3E-26 231.3 22.7 182 601-849 32-216 (477)
41 3oja_B Anopheles plasmodium-re 99.9 1.8E-21 6.3E-26 237.1 22.6 91 599-690 49-140 (597)
42 3o6n_A APL1; leucine-rich repe 99.9 5.2E-21 1.8E-25 220.7 20.6 305 559-961 43-349 (390)
43 4fmz_A Internalin; leucine ric 99.9 7.4E-21 2.5E-25 215.9 19.1 302 558-961 41-343 (347)
44 3oja_B Anopheles plasmodium-re 99.8 1E-20 3.4E-25 230.6 20.2 288 592-961 66-355 (597)
45 4fcg_A Uncharacterized protein 99.8 6.8E-20 2.3E-24 204.7 18.6 93 599-693 79-171 (328)
46 1xku_A Decorin; proteoglycan, 99.8 3.7E-19 1.3E-23 200.0 22.0 95 601-701 31-126 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-18 4.5E-23 195.6 22.2 86 602-691 34-120 (332)
48 1xku_A Decorin; proteoglycan, 99.8 1.7E-18 5.8E-23 194.6 21.5 275 601-1008 52-329 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 7.2E-19 2.5E-23 197.7 18.2 275 600-1009 53-331 (332)
50 3g06_A SSPH2 (leucine-rich rep 99.8 4.6E-18 1.6E-22 204.1 26.1 91 600-704 39-129 (622)
51 1ogq_A PGIP-2, polygalacturona 99.8 5.5E-19 1.9E-23 196.2 9.3 229 594-844 69-302 (313)
52 4fcg_A Uncharacterized protein 99.8 1.5E-18 5.1E-23 193.8 12.3 204 594-842 97-310 (328)
53 3ogk_B Coronatine-insensitive 99.7 2.2E-19 7.5E-24 220.2 3.1 382 623-1092 110-527 (592)
54 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-16 5.7E-21 190.6 27.3 256 784-1113 40-295 (622)
55 1ogq_A PGIP-2, polygalacturona 99.7 1.8E-18 6.3E-23 191.9 8.3 223 601-844 50-279 (313)
56 3ogk_B Coronatine-insensitive 99.7 9.6E-19 3.3E-23 214.4 1.8 211 592-842 103-327 (592)
57 3zyi_A Leucine-rich repeat-con 99.7 2.3E-16 8E-21 185.3 18.7 175 601-843 75-252 (452)
58 3zyj_A Leucine-rich repeat-con 99.7 3.3E-16 1.1E-20 183.3 19.6 176 601-843 64-241 (440)
59 2z80_A TOLL-like receptor 2, v 99.7 8.4E-17 2.9E-21 182.5 13.4 104 601-706 52-159 (353)
60 2z66_A Variable lymphocyte rec 99.7 5.2E-17 1.8E-21 180.3 10.7 223 601-843 28-258 (306)
61 3zyj_A Leucine-rich repeat-con 99.7 1E-15 3.6E-20 179.1 22.2 241 786-1113 45-290 (440)
62 3zyi_A Leucine-rich repeat-con 99.7 1.3E-15 4.5E-20 178.9 22.8 241 786-1113 56-301 (452)
63 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-19 6.4E-24 213.3 -10.3 91 593-684 20-125 (461)
64 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-18 5.2E-23 205.5 -4.2 160 536-707 3-181 (461)
65 2z66_A Variable lymphocyte rec 99.7 4.8E-16 1.6E-20 172.5 15.0 99 604-707 10-112 (306)
66 2z80_A TOLL-like receptor 2, v 99.6 2E-16 6.9E-21 179.4 10.8 232 594-843 69-311 (353)
67 2p1m_B Transport inhibitor res 99.6 3.2E-17 1.1E-21 201.1 2.8 93 746-843 230-324 (594)
68 1ozn_A Reticulon 4 receptor; N 99.6 8.9E-16 3E-20 168.3 14.0 202 600-844 31-236 (285)
69 3o53_A Protein LRIM1, AGAP0063 99.6 3.8E-16 1.3E-20 173.8 9.4 222 592-843 25-247 (317)
70 3o53_A Protein LRIM1, AGAP0063 99.6 5.5E-17 1.9E-21 180.6 2.0 81 601-683 10-91 (317)
71 1wwl_A Monocyte differentiatio 99.6 2.4E-16 8.2E-21 175.0 7.1 58 784-843 149-211 (312)
72 2xwt_C Thyrotropin receptor; s 99.6 5E-15 1.7E-19 157.5 16.5 200 907-1138 32-239 (239)
73 1ozn_A Reticulon 4 receptor; N 99.6 2.5E-15 8.7E-20 164.6 13.7 100 603-705 13-114 (285)
74 1w5s_A Origin recognition comp 99.6 4.4E-15 1.5E-19 172.7 16.2 314 182-510 22-387 (412)
75 3oja_A Leucine-rich immune mol 99.6 1.4E-15 4.8E-20 179.3 11.4 214 599-842 32-246 (487)
76 2qen_A Walker-type ATPase; unk 99.6 3.1E-14 1.1E-18 161.5 21.2 290 180-515 10-349 (350)
77 2z62_A TOLL-like receptor 4, v 99.6 9.3E-15 3.2E-19 159.3 14.7 204 601-844 28-235 (276)
78 2xwt_C Thyrotropin receptor; s 99.6 6.3E-15 2.2E-19 156.7 12.4 96 602-699 32-130 (239)
79 2o6q_A Variable lymphocyte rec 99.6 2.8E-14 9.6E-19 154.7 17.2 178 601-844 37-216 (270)
80 2fna_A Conserved hypothetical 99.6 5.8E-14 2E-18 159.7 20.7 291 180-514 11-356 (357)
81 1wwl_A Monocyte differentiatio 99.6 4.5E-15 1.5E-19 164.7 10.8 203 599-843 93-306 (312)
82 3rfs_A Internalin B, repeat mo 99.6 1.4E-14 4.7E-19 157.2 14.3 105 597-705 37-142 (272)
83 1p9a_G Platelet glycoprotein I 99.6 1.3E-14 4.4E-19 158.6 13.8 63 780-844 144-206 (290)
84 1p9a_G Platelet glycoprotein I 99.5 8.2E-14 2.8E-18 152.1 16.8 182 597-850 6-188 (290)
85 1h6u_A Internalin H; cell adhe 99.5 2.3E-14 8E-19 158.2 11.0 191 598-844 38-228 (308)
86 2o6q_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 147.3 18.3 179 601-850 16-197 (270)
87 2z62_A TOLL-like receptor 4, v 99.5 1.1E-13 3.8E-18 150.7 15.2 97 605-705 11-109 (276)
88 2p1m_B Transport inhibitor res 99.5 1.4E-15 4.8E-20 186.4 -0.1 59 905-963 455-518 (594)
89 4ay9_X Follicle-stimulating ho 99.5 8.1E-13 2.8E-17 149.0 22.1 237 787-1111 12-255 (350)
90 3qfl_A MLA10; coiled-coil, (CC 99.5 1.2E-14 4.2E-19 130.8 5.5 78 12-92 3-82 (115)
91 3oja_A Leucine-rich immune mol 99.5 5.7E-14 2E-18 165.5 11.1 212 878-1113 34-248 (487)
92 4glp_A Monocyte differentiatio 99.5 3.6E-13 1.2E-17 149.3 16.3 209 905-1137 90-306 (310)
93 4ay9_X Follicle-stimulating ho 99.5 3.5E-13 1.2E-17 152.1 14.5 86 784-872 154-240 (350)
94 3m19_A Variable lymphocyte rec 99.4 9.1E-13 3.1E-17 140.9 16.2 175 601-844 14-190 (251)
95 1h6u_A Internalin H; cell adhe 99.4 1.7E-13 5.9E-18 151.3 10.8 194 558-823 38-231 (308)
96 3rfs_A Internalin B, repeat mo 99.4 8.2E-13 2.8E-17 143.2 15.8 106 597-706 59-167 (272)
97 4glp_A Monocyte differentiatio 99.4 2.7E-13 9.3E-18 150.2 10.7 206 599-844 89-305 (310)
98 2ca6_A RAN GTPase-activating p 99.4 1.4E-14 4.9E-19 166.3 -2.5 90 595-684 26-134 (386)
99 1h6t_A Internalin B; cell adhe 99.4 1.1E-12 3.7E-17 143.4 11.7 103 597-706 42-144 (291)
100 3m19_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 137.0 14.4 157 601-824 35-194 (251)
101 2ast_B S-phase kinase-associat 99.4 6.8E-14 2.3E-18 157.6 1.6 211 594-843 61-282 (336)
102 4ezg_A Putative uncharacterize 99.4 1.1E-12 3.6E-17 134.5 8.9 106 598-706 41-146 (197)
103 2qby_B CDC6 homolog 3, cell di 99.3 5.7E-11 2E-15 136.2 22.1 293 182-497 20-339 (384)
104 2v1u_A Cell division control p 99.3 8.9E-11 3E-15 134.9 23.8 297 182-497 19-351 (387)
105 1fnn_A CDC6P, cell division co 99.3 1.1E-10 3.6E-15 134.3 24.4 297 182-498 17-352 (389)
106 2ca6_A RAN GTPase-activating p 99.3 2E-13 6.7E-18 156.8 1.4 247 555-844 26-314 (386)
107 2ast_B S-phase kinase-associat 99.3 2E-13 6.7E-18 153.8 1.2 135 554-706 61-205 (336)
108 1m9s_A Internalin B; cell inva 99.3 2.7E-12 9.3E-17 154.0 10.7 173 597-823 39-211 (605)
109 2o6s_A Variable lymphocyte rec 99.3 4E-12 1.4E-16 131.7 8.9 105 600-706 27-134 (208)
110 3cvr_A Invasion plasmid antige 99.3 9.2E-12 3.2E-16 147.4 13.2 176 601-844 59-241 (571)
111 2qby_A CDC6 homolog 1, cell di 99.3 3E-11 1E-15 138.9 16.7 296 182-497 20-348 (386)
112 3goz_A Leucine-rich repeat-con 99.3 1.8E-13 6.2E-18 155.3 -2.5 93 592-684 13-121 (362)
113 3cvr_A Invasion plasmid antige 99.3 2.1E-11 7.3E-16 144.3 14.5 176 907-1114 60-242 (571)
114 1xeu_A Internalin C; cellular 99.2 3E-12 1E-16 137.5 5.4 80 598-683 38-117 (263)
115 3e6j_A Variable lymphocyte rec 99.2 1E-11 3.6E-16 130.3 9.2 112 594-707 57-170 (229)
116 4ezg_A Putative uncharacterize 99.2 1.1E-11 3.9E-16 126.8 8.7 123 597-723 62-185 (197)
117 1xeu_A Internalin C; cellular 99.2 1.9E-11 6.5E-16 131.2 10.1 100 599-706 17-116 (263)
118 2v9t_B SLIT homolog 2 protein 99.2 4.8E-11 1.6E-15 124.2 12.8 96 604-703 14-111 (220)
119 1h6t_A Internalin B; cell adhe 99.2 3.9E-11 1.3E-15 131.1 12.1 171 928-1119 44-216 (291)
120 2ell_A Acidic leucine-rich nuc 99.2 1.8E-11 6.1E-16 121.7 8.2 108 597-708 45-159 (168)
121 2v9t_B SLIT homolog 2 protein 99.2 1.9E-11 6.6E-16 127.2 8.7 111 596-706 51-162 (220)
122 3goz_A Leucine-rich repeat-con 99.2 2.3E-12 7.7E-17 146.2 1.6 240 557-843 18-294 (362)
123 2v70_A SLIT-2, SLIT homolog 2 99.2 2.6E-11 8.8E-16 126.3 8.7 112 596-707 52-164 (220)
124 2ell_A Acidic leucine-rich nuc 99.2 3.3E-11 1.1E-15 119.8 8.6 112 598-712 21-136 (168)
125 1njg_A DNA polymerase III subu 99.2 4.3E-10 1.5E-14 120.2 17.4 197 182-396 23-231 (250)
126 2je0_A Acidic leucine-rich nuc 99.2 2E-11 6.9E-16 118.6 6.2 109 600-711 16-128 (149)
127 1m9s_A Internalin B; cell inva 99.2 9E-11 3.1E-15 140.8 13.0 171 928-1119 41-213 (605)
128 2xot_A Amphoterin-induced prot 99.2 4.7E-11 1.6E-15 135.1 10.0 98 604-705 21-121 (361)
129 2o6s_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 122.3 9.9 112 594-707 45-159 (208)
130 3e6j_A Variable lymphocyte rec 99.2 5.7E-11 1.9E-15 124.6 9.4 122 601-724 40-164 (229)
131 2v70_A SLIT-2, SLIT homolog 2 99.1 8E-11 2.7E-15 122.6 9.4 123 601-724 32-158 (220)
132 2je0_A Acidic leucine-rich nuc 99.1 3E-11 1E-15 117.4 5.0 107 594-704 35-148 (149)
133 1a9n_A U2A', U2A'; complex (nu 99.1 5.2E-11 1.8E-15 119.2 6.3 105 598-707 16-124 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.1 7E-11 2.4E-15 118.3 6.7 129 558-707 16-151 (176)
135 4b8c_D Glucose-repressible alc 99.1 9.4E-11 3.2E-15 144.6 7.9 116 592-710 215-330 (727)
136 2chg_A Replication factor C sm 99.1 2.4E-09 8.4E-14 112.2 17.8 186 182-393 17-204 (226)
137 4b8c_D Glucose-repressible alc 99.1 8.7E-11 3E-15 144.9 7.0 117 606-725 206-322 (727)
138 2xot_A Amphoterin-induced prot 99.0 2.8E-10 9.4E-15 128.8 9.8 111 601-712 39-152 (361)
139 1dce_A Protein (RAB geranylger 99.0 2E-10 6.8E-15 137.0 8.8 107 602-712 442-549 (567)
140 1w8a_A SLIT protein; signaling 99.0 3.9E-10 1.3E-14 114.5 8.1 107 602-708 30-138 (192)
141 1ds9_A Outer arm dynein; leuci 99.0 1.1E-11 3.8E-16 126.9 -3.9 110 594-708 41-152 (198)
142 2wfh_A SLIT homolog 2 protein 99.0 8.3E-10 2.8E-14 112.0 9.6 103 601-706 31-136 (193)
143 2wfh_A SLIT homolog 2 protein 99.0 7.7E-10 2.6E-14 112.2 8.8 87 596-683 49-137 (193)
144 1w8a_A SLIT protein; signaling 99.0 8.7E-10 3E-14 111.9 8.8 119 604-725 11-132 (192)
145 2o6r_A Variable lymphocyte rec 98.9 1E-09 3.4E-14 110.1 8.1 108 600-709 27-137 (177)
146 1dce_A Protein (RAB geranylger 98.9 9.9E-10 3.4E-14 131.0 8.6 101 597-701 459-565 (567)
147 2r9u_A Variable lymphocyte rec 98.9 1.4E-09 4.7E-14 108.2 8.1 99 604-707 15-116 (174)
148 2r9u_A Variable lymphocyte rec 98.9 1.4E-09 4.8E-14 108.1 6.4 90 601-692 33-124 (174)
149 1ds9_A Outer arm dynein; leuci 98.9 1.4E-10 4.7E-15 118.7 -1.6 127 555-702 42-180 (198)
150 3g39_A Variable lymphocyte rec 98.9 3.2E-09 1.1E-13 105.1 8.2 101 603-708 11-114 (170)
151 1hqc_A RUVB; extended AAA-ATPa 98.9 5.7E-09 2E-13 116.2 11.2 267 182-496 12-324 (324)
152 1sxj_B Activator 1 37 kDa subu 98.9 1.5E-08 5.1E-13 112.9 14.2 186 182-393 21-210 (323)
153 2o6r_A Variable lymphocyte rec 98.8 4.6E-09 1.6E-13 105.1 7.8 92 594-686 45-138 (177)
154 3sb4_A Hypothetical leucine ri 98.8 3.4E-08 1.1E-12 110.1 15.2 95 600-702 48-154 (329)
155 3g39_A Variable lymphocyte rec 98.8 8.9E-09 3E-13 102.0 8.1 83 601-684 30-114 (170)
156 1iqp_A RFCS; clamp loader, ext 98.7 1.3E-07 4.4E-12 105.4 14.4 188 182-395 25-214 (327)
157 3sb4_A Hypothetical leucine ri 98.7 1.1E-07 3.7E-12 105.9 12.9 89 1020-1120 225-314 (329)
158 3te6_A Regulatory protein SIR3 98.6 4.6E-07 1.6E-11 97.5 16.0 173 183-360 21-212 (318)
159 4fdw_A Leucine rich hypothetic 98.5 5.1E-06 1.7E-10 94.3 22.6 101 1041-1155 293-396 (401)
160 1jr3_A DNA polymerase III subu 98.5 7E-07 2.4E-11 101.5 15.3 195 182-393 16-221 (373)
161 2ifg_A High affinity nerve gro 98.5 1E-07 3.6E-12 107.1 7.0 86 597-683 27-114 (347)
162 2chq_A Replication factor C sm 98.5 9.3E-07 3.2E-11 98.0 14.3 182 182-392 17-203 (319)
163 4fs7_A Uncharacterized protein 98.5 6.4E-06 2.2E-10 94.1 21.2 64 613-679 59-124 (394)
164 2ifg_A High affinity nerve gro 98.5 2E-07 6.7E-12 104.9 8.4 101 605-708 12-115 (347)
165 4fdw_A Leucine rich hypothetic 98.4 1.4E-06 4.7E-11 99.0 13.6 77 602-681 158-235 (401)
166 3pfi_A Holliday junction ATP-d 98.3 8E-06 2.7E-10 91.1 17.4 178 181-392 28-226 (338)
167 3bos_A Putative DNA replicatio 98.3 1.1E-06 3.6E-11 93.0 7.9 172 183-392 29-216 (242)
168 4fs7_A Uncharacterized protein 98.2 4.6E-05 1.6E-09 86.9 21.5 103 594-702 64-168 (394)
169 1jbk_A CLPB protein; beta barr 98.2 1.9E-06 6.4E-11 87.5 8.7 46 182-233 22-67 (195)
170 1sxj_A Activator 1 95 kDa subu 98.2 8.9E-06 3E-10 95.8 15.1 198 182-394 39-254 (516)
171 1sxj_D Activator 1 41 kDa subu 98.2 9E-06 3.1E-10 91.4 14.5 194 182-392 37-234 (353)
172 3uk6_A RUVB-like 2; hexameric 98.2 1.5E-05 5.1E-10 90.1 14.8 194 182-391 44-301 (368)
173 2z4s_A Chromosomal replication 98.2 1.1E-05 3.8E-10 92.6 13.5 163 209-391 130-304 (440)
174 3pvs_A Replication-associated 98.1 4.8E-05 1.7E-09 87.0 17.2 177 182-391 26-213 (447)
175 3h4m_A Proteasome-activating n 98.1 3.9E-05 1.3E-09 83.1 15.7 184 182-391 17-229 (285)
176 1d2n_A N-ethylmaleimide-sensit 98.1 4.3E-05 1.5E-09 82.0 15.7 195 183-409 34-259 (272)
177 1a5t_A Delta prime, HOLB; zinc 98.0 6.1E-05 2.1E-09 83.3 16.3 171 188-392 8-204 (334)
178 2qz4_A Paraplegin; AAA+, SPG7, 98.0 6.2E-05 2.1E-09 80.3 15.8 187 182-392 6-221 (262)
179 1sxj_E Activator 1 40 kDa subu 98.0 2.2E-05 7.5E-10 88.2 12.6 196 182-392 14-236 (354)
180 3un9_A NLR family member X1; l 98.0 3E-07 1E-11 103.4 -3.0 83 600-683 71-166 (372)
181 3syl_A Protein CBBX; photosynt 98.0 3.6E-05 1.2E-09 84.5 13.2 158 183-360 32-218 (309)
182 3u61_B DNA polymerase accessor 98.0 5.5E-05 1.9E-09 83.6 13.9 176 182-388 26-211 (324)
183 3un9_A NLR family member X1; l 97.9 1.7E-06 5.8E-11 97.2 0.3 58 625-683 155-222 (372)
184 3eie_A Vacuolar protein sortin 97.9 0.00024 8.2E-09 78.1 17.1 185 182-393 18-228 (322)
185 3n70_A Transport activator; si 97.9 1.1E-05 3.6E-10 77.1 5.1 114 183-328 2-115 (145)
186 2p65_A Hypothetical protein PF 97.9 2E-05 6.7E-10 79.3 7.4 46 182-233 22-67 (187)
187 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00044 1.5E-08 75.7 18.3 188 182-394 12-224 (322)
188 1l8q_A Chromosomal replication 97.8 6E-05 2E-09 83.3 11.3 154 209-387 37-202 (324)
189 1sxj_C Activator 1 40 kDa subu 97.8 0.00018 6.1E-09 80.0 14.9 181 182-389 25-208 (340)
190 3rw6_A Nuclear RNA export fact 97.8 2.2E-05 7.4E-10 82.4 6.2 82 596-678 165-257 (267)
191 3e4g_A ATP synthase subunit S, 97.8 7.5E-06 2.6E-10 79.2 2.2 70 1043-1117 80-154 (176)
192 4gt6_A Cell surface protein; l 97.7 0.0031 1E-07 71.6 24.3 84 595-681 57-146 (394)
193 3ec2_A DNA replication protein 97.7 3.5E-05 1.2E-09 76.7 7.0 122 187-329 19-143 (180)
194 3d8b_A Fidgetin-like protein 1 97.7 0.00047 1.6E-08 76.9 16.9 186 182-394 84-296 (357)
195 2qp9_X Vacuolar protein sortin 97.7 0.0006 2E-08 75.8 17.7 187 182-393 51-261 (355)
196 2gno_A DNA polymerase III, gam 97.7 0.00018 6.3E-09 77.6 11.7 149 186-359 1-152 (305)
197 3b9p_A CG5977-PA, isoform A; A 97.7 0.0011 3.7E-08 72.1 17.9 185 182-392 21-232 (297)
198 1in4_A RUVB, holliday junction 97.6 0.0012 4E-08 72.9 17.8 177 182-392 25-222 (334)
199 2zan_A Vacuolar protein sortin 97.6 0.00066 2.3E-08 78.0 16.3 188 182-393 134-345 (444)
200 4gt6_A Cell surface protein; l 97.6 0.0017 5.7E-08 73.8 18.8 105 993-1111 260-366 (394)
201 2ra8_A Uncharacterized protein 97.6 6E-05 2E-09 83.8 6.0 10 878-887 139-148 (362)
202 1io0_A Tropomodulin; LRR prote 97.6 1.4E-05 4.6E-10 80.0 0.8 89 593-683 28-134 (185)
203 3vfd_A Spastin; ATPase, microt 97.5 0.0014 4.6E-08 74.3 17.1 186 182-392 115-325 (389)
204 3cf0_A Transitional endoplasmi 97.5 0.0011 3.7E-08 72.0 15.0 181 182-388 15-223 (301)
205 3pxg_A Negative regulator of g 97.5 0.00025 8.7E-09 82.1 10.4 148 182-359 180-338 (468)
206 1qvr_A CLPB protein; coiled co 97.5 0.00011 3.9E-09 92.2 7.9 155 182-358 170-344 (854)
207 1io0_A Tropomodulin; LRR prote 97.5 7E-05 2.4E-09 74.7 4.8 117 555-684 30-163 (185)
208 2w58_A DNAI, primosome compone 97.5 8.4E-05 2.9E-09 75.7 5.4 119 189-328 36-158 (202)
209 3co5_A Putative two-component 97.5 6.5E-05 2.2E-09 71.3 4.0 46 183-232 5-50 (143)
210 3e4g_A ATP synthase subunit S, 97.4 6.3E-05 2.1E-09 72.8 3.4 64 994-1059 81-150 (176)
211 3rw6_A Nuclear RNA export fact 97.4 7.1E-05 2.4E-09 78.5 4.1 81 622-704 167-259 (267)
212 3hu3_A Transitional endoplasmi 97.4 0.00096 3.3E-08 77.0 13.5 185 182-392 204-414 (489)
213 1ofh_A ATP-dependent HSL prote 97.4 0.0013 4.5E-08 72.0 13.9 52 182-233 15-74 (310)
214 2ra8_A Uncharacterized protein 97.4 0.0002 6.8E-09 79.6 7.1 14 808-821 306-319 (362)
215 4fcw_A Chaperone protein CLPB; 97.3 0.00071 2.4E-08 74.2 11.2 121 183-313 18-143 (311)
216 2bjv_A PSP operon transcriptio 97.3 0.00037 1.3E-08 74.3 7.9 47 183-233 7-53 (265)
217 4b4t_J 26S protease regulatory 97.3 0.0048 1.6E-07 68.0 16.4 179 182-386 148-354 (405)
218 4b4t_K 26S protease regulatory 97.3 0.0026 8.9E-08 71.3 14.6 178 182-385 172-378 (428)
219 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0019 6.4E-08 80.3 14.2 157 182-359 186-362 (758)
220 1ojl_A Transcriptional regulat 97.2 0.00046 1.6E-08 74.8 7.3 47 182-232 2-48 (304)
221 2kjq_A DNAA-related protein; s 97.2 0.00014 4.8E-09 69.2 2.7 37 210-249 37-73 (149)
222 2c9o_A RUVB-like 1; hexameric 97.2 0.0021 7.2E-08 74.2 13.0 92 292-391 298-408 (456)
223 3pxi_A Negative regulator of g 97.1 0.00095 3.2E-08 82.8 10.5 149 182-359 180-338 (758)
224 4h09_A Hypothetical leucine ri 97.1 0.011 3.6E-07 66.8 18.4 113 993-1120 235-349 (379)
225 4b4t_L 26S protease subunit RP 97.1 0.0085 2.9E-07 67.3 16.4 179 182-386 181-387 (437)
226 1lv7_A FTSH; alpha/beta domain 97.1 0.0076 2.6E-07 63.7 15.2 183 182-390 12-222 (257)
227 4b4t_H 26S protease regulatory 97.0 0.0069 2.4E-07 67.7 14.2 177 183-385 210-414 (467)
228 3pxi_A Negative regulator of g 96.9 0.00059 2E-08 84.6 6.1 155 182-358 491-674 (758)
229 2ce7_A Cell division protein F 96.9 0.0057 1.9E-07 69.9 13.4 179 182-386 16-221 (476)
230 2r62_A Cell division protease 96.9 0.00057 2E-08 73.0 4.9 52 182-233 11-68 (268)
231 2r44_A Uncharacterized protein 96.8 0.025 8.4E-07 62.3 17.4 151 183-360 28-199 (331)
232 4b4t_M 26S protease regulatory 96.8 0.0041 1.4E-07 69.8 10.4 177 182-385 181-386 (434)
233 4b4t_I 26S protease regulatory 96.7 0.013 4.5E-07 64.7 13.6 177 182-385 182-387 (437)
234 4h09_A Hypothetical leucine ri 96.7 0.047 1.6E-06 61.4 18.7 33 905-938 285-318 (379)
235 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.017 5.8E-07 66.5 13.5 43 183-233 23-65 (500)
236 2qgz_A Helicase loader, putati 96.5 0.001 3.5E-08 72.1 2.9 44 188-234 134-177 (308)
237 2cvh_A DNA repair and recombin 96.5 0.013 4.6E-07 60.0 11.2 84 209-299 20-115 (220)
238 3m6a_A ATP-dependent protease 96.4 0.01 3.5E-07 69.8 10.9 52 182-233 81-132 (543)
239 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0049 1.7E-07 76.6 8.5 132 183-328 459-607 (758)
240 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0019 6.7E-08 68.5 3.6 68 209-299 123-192 (331)
241 1qvr_A CLPB protein; coiled co 96.2 0.01 3.4E-07 74.5 10.1 136 183-328 559-710 (854)
242 3t15_A Ribulose bisphosphate c 96.2 0.033 1.1E-06 59.8 12.5 27 207-233 34-60 (293)
243 3cf2_A TER ATPase, transitiona 96.1 0.06 2.1E-06 65.3 15.6 179 182-386 204-407 (806)
244 2b8t_A Thymidine kinase; deoxy 96.0 0.0043 1.5E-07 62.9 4.4 114 209-331 12-128 (223)
245 1um8_A ATP-dependent CLP prote 96.0 0.036 1.2E-06 62.1 12.3 24 210-233 73-96 (376)
246 3hr8_A Protein RECA; alpha and 95.9 0.018 6.1E-07 63.0 8.9 84 208-299 60-149 (356)
247 1g5t_A COB(I)alamin adenosyltr 95.7 0.0097 3.3E-07 58.3 5.3 118 210-330 29-164 (196)
248 1ye8_A Protein THEP1, hypothet 95.7 0.034 1.1E-06 54.5 9.3 23 211-233 2-24 (178)
249 3io5_A Recombination and repai 95.7 0.029 9.8E-07 59.3 9.1 83 211-299 30-121 (333)
250 1v5w_A DMC1, meiotic recombina 95.6 0.058 2E-06 59.3 11.9 60 207-267 120-182 (343)
251 2z43_A DNA repair and recombin 95.6 0.033 1.1E-06 60.8 9.7 58 209-267 107-167 (324)
252 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.021 7.1E-07 59.2 7.6 114 210-329 24-168 (235)
253 1n0w_A DNA repair protein RAD5 95.5 0.036 1.2E-06 57.8 9.4 90 209-299 24-129 (243)
254 2i1q_A DNA repair and recombin 95.5 0.041 1.4E-06 60.2 10.0 90 208-298 97-213 (322)
255 1ypw_A Transitional endoplasmi 95.5 0.048 1.6E-06 67.4 11.6 157 182-359 204-385 (806)
256 2x8a_A Nuclear valosin-contain 95.5 0.092 3.1E-06 55.5 12.4 126 212-359 47-191 (274)
257 2dhr_A FTSH; AAA+ protein, hex 95.5 0.079 2.7E-06 60.9 12.6 175 182-386 31-236 (499)
258 1jr3_D DNA polymerase III, del 95.4 0.16 5.5E-06 55.9 14.6 158 209-392 18-184 (343)
259 3ice_A Transcription terminati 95.2 0.014 4.9E-07 63.1 5.0 42 210-252 175-216 (422)
260 1rz3_A Hypothetical protein rb 95.0 0.022 7.5E-07 57.3 5.6 44 186-232 2-45 (201)
261 2zr9_A Protein RECA, recombina 95.0 0.051 1.8E-06 59.6 8.6 85 208-300 60-150 (349)
262 2px0_A Flagellar biosynthesis 95.0 0.044 1.5E-06 58.6 7.9 86 209-298 105-191 (296)
263 3rfe_A Platelet glycoprotein I 94.9 0.027 9.3E-07 51.7 5.3 53 604-659 11-66 (130)
264 1xp8_A RECA protein, recombina 94.8 0.052 1.8E-06 59.8 8.2 84 208-299 73-162 (366)
265 1u94_A RECA protein, recombina 94.8 0.046 1.6E-06 60.0 7.6 84 208-299 62-151 (356)
266 2pze_A Cystic fibrosis transme 94.7 0.23 8E-06 50.7 12.2 24 210-233 35-58 (229)
267 2cbz_A Multidrug resistance-as 94.6 0.18 6.1E-06 51.9 11.2 24 210-233 32-55 (237)
268 3tqc_A Pantothenate kinase; bi 94.5 0.097 3.3E-06 56.3 9.2 47 184-232 69-115 (321)
269 2orw_A Thymidine kinase; TMTK, 94.4 0.0087 3E-07 59.1 0.7 109 210-330 4-114 (184)
270 2ff7_A Alpha-hemolysin translo 94.1 0.11 3.9E-06 53.8 8.4 23 210-232 36-58 (247)
271 1pzn_A RAD51, DNA repair and r 94.0 0.19 6.6E-06 55.1 10.5 90 208-299 130-241 (349)
272 1odf_A YGR205W, hypothetical 3 94.0 0.15 5.3E-06 54.1 9.4 27 207-233 29-55 (290)
273 3c8u_A Fructokinase; YP_612366 93.9 0.039 1.3E-06 55.8 4.4 39 190-232 7-45 (208)
274 1cr0_A DNA primase/helicase; R 93.8 0.1 3.5E-06 56.1 7.7 38 210-249 36-73 (296)
275 4a74_A DNA repair and recombin 93.6 0.28 9.7E-06 50.3 10.5 47 208-254 24-73 (231)
276 3rfe_A Platelet glycoprotein I 93.6 0.05 1.7E-06 49.9 4.1 45 1063-1113 20-66 (130)
277 3bh0_A DNAB-like replicative h 93.6 0.22 7.4E-06 53.9 9.9 51 209-264 68-118 (315)
278 1qhx_A CPT, protein (chloramph 93.5 0.032 1.1E-06 54.8 2.9 23 210-232 4-26 (178)
279 1gvn_B Zeta; postsegregational 93.5 0.064 2.2E-06 57.2 5.3 42 190-232 15-56 (287)
280 3lda_A DNA repair protein RAD5 93.5 0.17 5.8E-06 56.4 8.9 59 208-267 177-238 (400)
281 3dm5_A SRP54, signal recogniti 93.4 0.29 9.8E-06 54.9 10.5 26 208-233 99-124 (443)
282 1vma_A Cell division protein F 93.3 0.15 5.1E-06 54.6 7.9 88 208-298 103-195 (306)
283 3kb2_A SPBC2 prophage-derived 93.3 0.036 1.2E-06 54.1 2.9 23 210-232 2-24 (173)
284 3lw7_A Adenylate kinase relate 93.3 0.036 1.2E-06 54.3 2.9 20 210-229 2-21 (179)
285 1zp6_A Hypothetical protein AT 93.3 0.047 1.6E-06 54.4 3.7 24 209-232 9-32 (191)
286 2pjz_A Hypothetical protein ST 93.3 0.36 1.2E-05 50.4 10.6 23 210-232 31-53 (263)
287 1ex7_A Guanylate kinase; subst 93.2 0.029 1E-06 55.0 1.9 23 210-232 2-24 (186)
288 3vaa_A Shikimate kinase, SK; s 93.1 0.042 1.4E-06 55.1 3.0 23 210-232 26-48 (199)
289 3nh6_A ATP-binding cassette SU 93.1 0.15 5E-06 54.5 7.3 23 210-232 81-103 (306)
290 1sky_E F1-ATPase, F1-ATP synth 93.0 0.24 8.2E-06 55.7 9.2 88 210-299 152-255 (473)
291 1ly1_A Polynucleotide kinase; 93.0 0.048 1.6E-06 53.7 3.2 22 210-231 3-24 (181)
292 3hws_A ATP-dependent CLP prote 93.0 0.069 2.3E-06 59.5 4.8 51 183-233 16-75 (363)
293 4a1f_A DNAB helicase, replicat 93.0 0.25 8.5E-06 53.5 8.9 51 210-265 47-97 (338)
294 2p5t_B PEZT; postsegregational 92.9 0.077 2.6E-06 55.5 4.8 42 190-232 14-55 (253)
295 1fx0_B ATP synthase beta chain 92.8 0.26 8.8E-06 55.5 8.9 87 210-298 166-275 (498)
296 3l0o_A Transcription terminati 92.7 0.032 1.1E-06 60.3 1.5 53 193-251 164-216 (427)
297 1kgd_A CASK, peripheral plasma 92.7 0.055 1.9E-06 53.2 3.2 23 210-232 6-28 (180)
298 3trf_A Shikimate kinase, SK; a 92.7 0.051 1.7E-06 53.7 2.9 23 210-232 6-28 (185)
299 3uie_A Adenylyl-sulfate kinase 92.6 0.063 2.2E-06 53.9 3.5 25 209-233 25-49 (200)
300 3kl4_A SRP54, signal recogniti 92.5 0.21 7E-06 56.1 7.8 88 209-299 97-189 (433)
301 1kag_A SKI, shikimate kinase I 92.5 0.046 1.6E-06 53.4 2.3 23 210-232 5-27 (173)
302 2rhm_A Putative kinase; P-loop 92.5 0.065 2.2E-06 53.4 3.5 25 208-232 4-28 (193)
303 2ga8_A Hypothetical 39.9 kDa p 92.4 0.12 4E-06 55.9 5.4 47 185-233 2-48 (359)
304 2dr3_A UPF0273 protein PH0284; 92.3 0.19 6.6E-06 52.2 7.0 38 210-250 24-61 (247)
305 1nks_A Adenylate kinase; therm 92.3 0.066 2.3E-06 53.3 3.2 24 210-233 2-25 (194)
306 1uj2_A Uridine-cytidine kinase 92.3 0.068 2.3E-06 55.9 3.4 26 207-232 20-45 (252)
307 2ck3_D ATP synthase subunit be 92.3 0.57 1.9E-05 52.5 10.7 87 210-298 154-262 (482)
308 3tau_A Guanylate kinase, GMP k 92.2 0.069 2.4E-06 54.0 3.2 25 209-233 8-32 (208)
309 4eun_A Thermoresistant glucoki 92.2 0.07 2.4E-06 53.5 3.2 24 209-232 29-52 (200)
310 1knq_A Gluconate kinase; ALFA/ 92.2 0.079 2.7E-06 51.8 3.5 24 209-232 8-31 (175)
311 1y63_A LMAJ004144AAA protein; 92.1 0.072 2.5E-06 52.6 3.1 24 209-232 10-33 (184)
312 3t61_A Gluconokinase; PSI-biol 92.1 0.053 1.8E-06 54.5 2.2 24 209-232 18-41 (202)
313 3cf2_A TER ATPase, transitiona 92.0 0.62 2.1E-05 56.5 11.6 53 182-234 477-536 (806)
314 3iij_A Coilin-interacting nucl 92.0 0.064 2.2E-06 52.7 2.6 24 209-232 11-34 (180)
315 1tue_A Replication protein E1; 92.0 0.11 3.6E-06 51.2 4.0 38 191-233 45-82 (212)
316 2qt1_A Nicotinamide riboside k 92.0 0.09 3.1E-06 53.1 3.7 25 208-232 20-44 (207)
317 2qor_A Guanylate kinase; phosp 91.9 0.064 2.2E-06 54.0 2.6 26 208-233 11-36 (204)
318 1zuh_A Shikimate kinase; alpha 91.9 0.073 2.5E-06 51.6 2.9 25 208-232 6-30 (168)
319 1kht_A Adenylate kinase; phosp 91.9 0.071 2.4E-06 53.0 2.9 24 210-233 4-27 (192)
320 2ze6_A Isopentenyl transferase 91.9 0.077 2.6E-06 55.4 3.2 23 210-232 2-24 (253)
321 4gp7_A Metallophosphoesterase; 91.9 0.082 2.8E-06 51.4 3.2 23 209-231 9-31 (171)
322 2bdt_A BH3686; alpha-beta prot 91.8 0.086 2.9E-06 52.3 3.4 22 210-231 3-24 (189)
323 3tr0_A Guanylate kinase, GMP k 91.8 0.084 2.9E-06 53.2 3.3 23 210-232 8-30 (205)
324 3umf_A Adenylate kinase; rossm 91.8 0.083 2.8E-06 53.3 3.2 26 207-232 27-52 (217)
325 2xxa_A Signal recognition part 91.8 0.34 1.2E-05 54.7 8.5 40 208-249 99-138 (433)
326 1ls1_A Signal recognition part 91.8 0.32 1.1E-05 51.8 8.0 86 210-298 99-189 (295)
327 3fwy_A Light-independent proto 91.8 0.089 3E-06 56.7 3.5 41 207-250 46-86 (314)
328 1ukz_A Uridylate kinase; trans 91.7 0.096 3.3E-06 52.6 3.6 26 207-232 13-38 (203)
329 2j37_W Signal recognition part 91.7 0.83 2.8E-05 52.4 11.7 27 207-233 99-125 (504)
330 1tev_A UMP-CMP kinase; ploop, 91.7 0.086 3E-06 52.6 3.2 23 210-232 4-26 (196)
331 3tlx_A Adenylate kinase 2; str 91.7 0.12 4.2E-06 53.5 4.4 25 208-232 28-52 (243)
332 2hf9_A Probable hydrogenase ni 91.7 0.14 4.6E-06 52.6 4.8 39 188-232 23-61 (226)
333 2c95_A Adenylate kinase 1; tra 91.7 0.085 2.9E-06 52.7 3.1 23 210-232 10-32 (196)
334 1uf9_A TT1252 protein; P-loop, 91.6 0.096 3.3E-06 52.6 3.5 26 207-232 6-31 (203)
335 1g8p_A Magnesium-chelatase 38 91.6 0.076 2.6E-06 58.9 2.9 46 182-233 24-69 (350)
336 3asz_A Uridine kinase; cytidin 91.6 0.098 3.3E-06 53.0 3.5 25 208-232 5-29 (211)
337 3a4m_A L-seryl-tRNA(SEC) kinas 91.6 0.092 3.1E-06 55.2 3.4 24 209-232 4-27 (260)
338 3upu_A ATP-dependent DNA helic 91.6 0.3 1E-05 56.2 8.0 123 188-330 31-166 (459)
339 2ffh_A Protein (FFH); SRP54, s 91.6 0.33 1.1E-05 54.3 8.0 25 210-234 99-123 (425)
340 3a00_A Guanylate kinase, GMP k 91.6 0.073 2.5E-06 52.7 2.4 24 210-233 2-25 (186)
341 1via_A Shikimate kinase; struc 91.5 0.07 2.4E-06 52.2 2.3 23 210-232 5-27 (175)
342 2j41_A Guanylate kinase; GMP, 91.5 0.091 3.1E-06 53.0 3.2 24 210-233 7-30 (207)
343 2jaq_A Deoxyguanosine kinase; 91.5 0.087 3E-06 53.0 3.0 22 211-232 2-23 (205)
344 2yvu_A Probable adenylyl-sulfa 91.4 0.11 3.6E-06 51.5 3.5 27 208-234 12-38 (186)
345 3cm0_A Adenylate kinase; ATP-b 91.4 0.1 3.5E-06 51.5 3.4 23 210-232 5-27 (186)
346 3ney_A 55 kDa erythrocyte memb 91.4 0.095 3.3E-06 51.7 3.0 25 208-232 18-42 (197)
347 1xjc_A MOBB protein homolog; s 91.3 0.095 3.3E-06 50.2 2.9 27 208-234 3-29 (169)
348 1jjv_A Dephospho-COA kinase; P 91.3 0.1 3.6E-06 52.5 3.4 22 210-231 3-24 (206)
349 2iyv_A Shikimate kinase, SK; t 91.3 0.071 2.4E-06 52.6 2.1 23 210-232 3-25 (184)
350 2if2_A Dephospho-COA kinase; a 91.3 0.094 3.2E-06 52.8 3.0 22 210-231 2-23 (204)
351 3jvv_A Twitching mobility prot 91.1 0.051 1.8E-06 59.6 0.9 111 210-332 124-234 (356)
352 2cdn_A Adenylate kinase; phosp 91.1 0.11 3.8E-06 52.1 3.3 25 208-232 19-43 (201)
353 1j8m_F SRP54, signal recogniti 91.1 0.31 1.1E-05 51.9 6.9 87 209-298 98-189 (297)
354 2plr_A DTMP kinase, probable t 91.1 0.11 3.8E-06 52.6 3.4 24 210-233 5-28 (213)
355 1pgv_A TMD-1, tropomodulin TMD 91.0 0.13 4.6E-06 50.5 3.7 88 593-682 33-136 (197)
356 1e6c_A Shikimate kinase; phosp 91.0 0.084 2.9E-06 51.4 2.3 23 210-232 3-25 (173)
357 1lvg_A Guanylate kinase, GMP k 91.0 0.088 3E-06 52.6 2.4 23 210-232 5-27 (198)
358 3e70_C DPA, signal recognition 91.0 0.57 2E-05 50.6 9.0 27 208-234 128-154 (328)
359 2bwj_A Adenylate kinase 5; pho 91.0 0.1 3.4E-06 52.3 2.9 23 210-232 13-35 (199)
360 1zu4_A FTSY; GTPase, signal re 91.0 0.43 1.5E-05 51.5 7.9 39 208-249 104-142 (320)
361 2wsm_A Hydrogenase expression/ 91.0 0.15 5E-06 52.1 4.2 41 186-232 13-53 (221)
362 1cke_A CK, MSSA, protein (cyti 90.9 0.11 3.6E-06 53.4 3.0 23 210-232 6-28 (227)
363 2grj_A Dephospho-COA kinase; T 90.9 0.12 4.1E-06 51.1 3.2 25 208-232 11-35 (192)
364 1qf9_A UMP/CMP kinase, protein 90.9 0.12 4E-06 51.5 3.2 24 209-232 6-29 (194)
365 3vr4_D V-type sodium ATPase su 90.8 0.29 9.8E-06 54.5 6.4 89 210-298 152-257 (465)
366 2pt5_A Shikimate kinase, SK; a 90.8 0.12 4E-06 50.1 3.0 22 211-232 2-23 (168)
367 3aez_A Pantothenate kinase; tr 90.7 0.13 4.6E-06 55.3 3.7 27 207-233 88-114 (312)
368 2vli_A Antibiotic resistance p 90.7 0.08 2.7E-06 52.2 1.7 23 210-232 6-28 (183)
369 2bbw_A Adenylate kinase 4, AK4 90.7 0.12 4.1E-06 53.8 3.2 24 209-232 27-50 (246)
370 1htw_A HI0065; nucleotide-bind 90.6 0.15 5.3E-06 48.4 3.6 23 210-232 34-56 (158)
371 3b5x_A Lipid A export ATP-bind 90.5 0.73 2.5E-05 54.7 10.2 23 210-232 370-392 (582)
372 1nn5_A Similar to deoxythymidy 90.5 0.13 4.3E-06 52.3 3.2 25 209-233 9-33 (215)
373 2pbr_A DTMP kinase, thymidylat 90.5 0.12 4.2E-06 51.3 3.0 23 211-233 2-24 (195)
374 3cmu_A Protein RECA, recombina 90.5 0.3 1E-05 64.8 7.2 84 208-299 1426-1515(2050)
375 2wwf_A Thymidilate kinase, put 90.4 0.13 4.3E-06 52.2 3.0 25 209-233 10-34 (212)
376 2jeo_A Uridine-cytidine kinase 90.4 0.15 5.2E-06 53.0 3.7 24 209-232 25-48 (245)
377 2pez_A Bifunctional 3'-phospho 90.4 0.15 5.1E-06 50.0 3.4 24 209-232 5-28 (179)
378 1znw_A Guanylate kinase, GMP k 90.2 0.14 4.9E-06 51.5 3.2 23 210-232 21-43 (207)
379 2f6r_A COA synthase, bifunctio 90.2 0.16 5.6E-06 53.8 3.8 24 207-230 73-96 (281)
380 1aky_A Adenylate kinase; ATP:A 90.2 0.14 4.7E-06 52.3 3.0 23 210-232 5-27 (220)
381 1z6g_A Guanylate kinase; struc 90.1 0.12 4.2E-06 52.4 2.6 23 210-232 24-46 (218)
382 1zd8_A GTP:AMP phosphotransfer 90.1 0.13 4.6E-06 52.7 2.9 24 209-232 7-30 (227)
383 1s96_A Guanylate kinase, GMP k 90.0 0.15 5.2E-06 51.6 3.2 26 208-233 15-40 (219)
384 3e1s_A Exodeoxyribonuclease V, 90.0 0.21 7.3E-06 58.8 4.8 106 210-329 205-316 (574)
385 3gmt_A Adenylate kinase; ssgci 89.9 0.076 2.6E-06 53.7 0.8 24 210-233 9-32 (230)
386 3gqb_B V-type ATP synthase bet 89.9 0.31 1.1E-05 54.3 5.7 89 210-298 148-260 (464)
387 2z0h_A DTMP kinase, thymidylat 89.9 0.15 5.2E-06 50.8 3.0 23 211-233 2-24 (197)
388 2v54_A DTMP kinase, thymidylat 89.8 0.15 5.2E-06 51.1 3.0 24 210-233 5-28 (204)
389 4e22_A Cytidylate kinase; P-lo 89.8 0.16 5.6E-06 52.9 3.3 23 210-232 28-50 (252)
390 1m7g_A Adenylylsulfate kinase; 89.7 0.18 6E-06 51.0 3.4 25 209-233 25-49 (211)
391 1zak_A Adenylate kinase; ATP:A 89.7 0.14 4.7E-06 52.4 2.6 24 209-232 5-28 (222)
392 2q6t_A DNAB replication FORK h 89.7 0.81 2.8E-05 52.2 9.3 52 209-264 200-251 (444)
393 1gtv_A TMK, thymidylate kinase 89.7 0.097 3.3E-06 53.1 1.4 23 211-233 2-24 (214)
394 3fb4_A Adenylate kinase; psych 89.6 0.16 5.5E-06 51.6 3.0 22 211-232 2-23 (216)
395 1sq5_A Pantothenate kinase; P- 89.6 0.35 1.2E-05 52.1 5.8 25 208-232 79-103 (308)
396 3llm_A ATP-dependent RNA helic 89.6 0.83 2.8E-05 46.9 8.5 90 210-300 77-187 (235)
397 1ixz_A ATP-dependent metallopr 89.5 0.15 5.1E-06 53.4 2.8 22 212-233 52-73 (254)
398 1rj9_A FTSY, signal recognitio 89.5 0.17 5.9E-06 54.1 3.3 25 209-233 102-126 (304)
399 3a8t_A Adenylate isopentenyltr 89.5 0.21 7.1E-06 53.6 3.8 24 209-232 40-63 (339)
400 2f1r_A Molybdopterin-guanine d 89.5 0.13 4.4E-06 49.7 2.0 25 210-234 3-27 (171)
401 3dl0_A Adenylate kinase; phosp 89.4 0.17 5.8E-06 51.4 3.0 22 211-232 2-23 (216)
402 1vht_A Dephospho-COA kinase; s 89.4 0.2 6.8E-06 51.0 3.5 22 210-231 5-26 (218)
403 3p32_A Probable GTPase RV1496/ 89.4 0.32 1.1E-05 53.6 5.4 39 191-233 65-103 (355)
404 3d3q_A TRNA delta(2)-isopenten 89.3 0.18 6.2E-06 54.3 3.2 23 210-232 8-30 (340)
405 2j9r_A Thymidine kinase; TK1, 89.3 0.45 1.5E-05 47.3 5.8 111 209-331 28-140 (214)
406 3k1j_A LON protease, ATP-depen 89.2 0.2 6.7E-06 59.9 3.8 44 182-233 41-84 (604)
407 2r9v_A ATP synthase subunit al 89.1 0.68 2.3E-05 52.2 7.7 84 210-298 176-276 (515)
408 3vkw_A Replicase large subunit 89.1 0.71 2.4E-05 51.5 7.8 25 207-231 159-183 (446)
409 3nwj_A ATSK2; P loop, shikimat 89.0 0.15 5.2E-06 52.7 2.3 23 210-232 49-71 (250)
410 2qe7_A ATP synthase subunit al 88.9 0.7 2.4E-05 52.1 7.7 84 210-298 163-263 (502)
411 1np6_A Molybdopterin-guanine d 88.9 0.21 7.1E-06 48.4 3.0 26 208-233 5-30 (174)
412 3exa_A TRNA delta(2)-isopenten 88.9 0.22 7.6E-06 52.6 3.5 23 210-232 4-26 (322)
413 2i3b_A HCR-ntpase, human cance 88.8 0.18 6.2E-06 49.7 2.6 24 210-233 2-25 (189)
414 3be4_A Adenylate kinase; malar 88.8 0.17 5.7E-06 51.5 2.5 23 210-232 6-28 (217)
415 1xx6_A Thymidine kinase; NESG, 88.8 0.15 5.2E-06 50.2 2.0 110 209-330 8-119 (191)
416 2ged_A SR-beta, signal recogni 88.7 0.31 1.1E-05 48.3 4.3 25 208-232 47-71 (193)
417 3b9q_A Chloroplast SRP recepto 88.7 0.24 8.1E-06 53.0 3.6 26 208-233 99-124 (302)
418 3lv8_A DTMP kinase, thymidylat 88.6 0.43 1.5E-05 48.7 5.3 51 210-262 28-78 (236)
419 3crm_A TRNA delta(2)-isopenten 88.6 0.22 7.5E-06 53.3 3.2 23 210-232 6-28 (323)
420 2fz4_A DNA repair protein RAD2 88.5 1.6 5.4E-05 44.8 9.7 94 212-314 111-217 (237)
421 3hjn_A DTMP kinase, thymidylat 88.5 0.77 2.6E-05 45.5 7.0 50 211-263 2-51 (197)
422 2r6a_A DNAB helicase, replicat 88.5 1.1 3.8E-05 51.2 9.3 50 209-262 203-252 (454)
423 1yrb_A ATP(GTP)binding protein 88.5 0.31 1.1E-05 51.1 4.4 27 207-233 12-38 (262)
424 3ake_A Cytidylate kinase; CMP 88.4 0.22 7.5E-06 50.2 3.0 22 211-232 4-25 (208)
425 3sr0_A Adenylate kinase; phosp 88.4 0.21 7.1E-06 50.0 2.7 22 211-232 2-23 (206)
426 3mfy_A V-type ATP synthase alp 88.4 1.1 3.8E-05 50.8 8.8 47 210-261 228-275 (588)
427 2ehv_A Hypothetical protein PH 88.4 0.22 7.6E-06 51.9 3.1 22 210-231 31-52 (251)
428 1g41_A Heat shock protein HSLU 88.4 0.25 8.5E-06 55.5 3.6 52 182-233 15-74 (444)
429 1iy2_A ATP-dependent metallopr 88.3 0.2 6.9E-06 53.2 2.8 51 182-233 40-97 (278)
430 2onk_A Molybdate/tungstate ABC 88.3 0.24 8.1E-06 51.0 3.1 23 210-232 25-47 (240)
431 3lnc_A Guanylate kinase, GMP k 88.3 0.17 5.7E-06 52.1 2.0 22 210-231 28-50 (231)
432 1pgv_A TMD-1, tropomodulin TMD 88.3 0.34 1.2E-05 47.6 4.1 93 591-683 60-168 (197)
433 3r20_A Cytidylate kinase; stru 88.2 0.23 8E-06 50.5 3.0 23 210-232 10-32 (233)
434 3ld9_A DTMP kinase, thymidylat 88.1 0.58 2E-05 47.3 5.8 55 207-263 19-74 (223)
435 2c61_A A-type ATP synthase non 88.1 0.46 1.6E-05 53.3 5.5 89 210-298 153-258 (469)
436 3foz_A TRNA delta(2)-isopenten 88.0 0.29 1E-05 51.6 3.7 25 208-232 9-33 (316)
437 4tmk_A Protein (thymidylate ki 88.0 0.5 1.7E-05 47.4 5.3 52 210-263 4-55 (213)
438 3cmu_A Protein RECA, recombina 88.0 0.76 2.6E-05 61.1 8.2 85 208-300 382-472 (2050)
439 3b60_A Lipid A export ATP-bind 88.0 0.93 3.2E-05 53.8 8.5 23 210-232 370-392 (582)
440 2xb4_A Adenylate kinase; ATP-b 88.0 0.24 8.2E-06 50.5 3.0 22 211-232 2-23 (223)
441 2qmh_A HPR kinase/phosphorylas 88.0 0.27 9.1E-06 48.1 3.0 23 210-232 35-57 (205)
442 1e4v_A Adenylate kinase; trans 87.9 0.24 8.3E-06 50.1 3.0 22 211-232 2-23 (214)
443 1ak2_A Adenylate kinase isoenz 87.9 0.26 8.9E-06 50.7 3.2 23 210-232 17-39 (233)
444 2pcj_A ABC transporter, lipopr 87.8 0.25 8.5E-06 50.3 3.0 23 210-232 31-53 (224)
445 3tif_A Uncharacterized ABC tra 87.8 0.27 9.1E-06 50.5 3.2 23 210-232 32-54 (235)
446 2ck3_A ATP synthase subunit al 87.7 1.3 4.3E-05 50.1 8.7 88 210-298 163-271 (510)
447 3bk7_A ABC transporter ATP-bin 87.7 1.2 4.2E-05 52.6 9.1 125 210-334 383-537 (607)
448 3vr4_A V-type sodium ATPase ca 87.5 1.3 4.4E-05 50.6 8.6 47 210-261 233-280 (600)
449 2wji_A Ferrous iron transport 87.3 0.34 1.2E-05 46.5 3.5 23 210-232 4-26 (165)
450 3zvl_A Bifunctional polynucleo 87.2 0.28 9.5E-06 55.4 3.2 26 207-232 256-281 (416)
451 2og2_A Putative signal recogni 87.2 0.32 1.1E-05 53.1 3.6 26 208-233 156-181 (359)
452 3cmw_A Protein RECA, recombina 87.2 0.69 2.3E-05 60.7 7.1 81 210-298 384-470 (1706)
453 3ozx_A RNAse L inhibitor; ATP 87.2 1.3 4.4E-05 51.6 8.8 24 209-232 25-48 (538)
454 2zej_A Dardarin, leucine-rich 87.1 0.28 9.6E-06 48.2 2.8 22 211-232 4-25 (184)
455 3b85_A Phosphate starvation-in 87.1 0.23 7.8E-06 49.8 2.1 23 210-232 23-45 (208)
456 1oix_A RAS-related protein RAB 87.1 0.3 1E-05 48.3 3.1 24 209-232 29-52 (191)
457 3oaa_A ATP synthase subunit al 87.1 1.1 3.9E-05 50.2 7.8 84 210-298 163-263 (513)
458 3gfo_A Cobalt import ATP-bindi 87.1 0.29 9.9E-06 51.5 3.0 22 210-231 35-56 (275)
459 3j16_B RLI1P; ribosome recycli 87.0 1.9 6.7E-05 50.8 10.3 23 210-232 104-126 (608)
460 1b0u_A Histidine permease; ABC 87.0 0.31 1.1E-05 51.0 3.2 23 210-232 33-55 (262)
461 2dyk_A GTP-binding protein; GT 86.9 0.35 1.2E-05 46.0 3.3 23 210-232 2-24 (161)
462 1svm_A Large T antigen; AAA+ f 86.9 0.54 1.9E-05 51.8 5.2 24 209-232 169-192 (377)
463 1ltq_A Polynucleotide kinase; 86.9 0.31 1.1E-05 52.5 3.2 22 210-231 3-24 (301)
464 1a7j_A Phosphoribulokinase; tr 86.9 0.16 5.4E-06 54.1 0.9 25 208-232 4-28 (290)
465 4akg_A Glutathione S-transfera 86.8 2.4 8E-05 58.8 12.2 138 210-359 1268-1431(2695)
466 2olj_A Amino acid ABC transpor 86.8 0.33 1.1E-05 50.7 3.2 23 210-232 51-73 (263)
467 1mv5_A LMRA, multidrug resista 86.7 0.36 1.2E-05 49.8 3.5 23 210-232 29-51 (243)
468 2vp4_A Deoxynucleoside kinase; 86.7 0.36 1.2E-05 49.5 3.5 26 207-232 18-43 (230)
469 2r8r_A Sensor protein; KDPD, P 86.7 0.37 1.3E-05 48.3 3.4 107 211-329 8-127 (228)
470 1sgw_A Putative ABC transporte 86.7 0.27 9.3E-06 49.5 2.4 23 210-232 36-58 (214)
471 1ji0_A ABC transporter; ATP bi 86.6 0.32 1.1E-05 50.1 3.0 23 210-232 33-55 (240)
472 4g1u_C Hemin import ATP-bindin 86.6 0.32 1.1E-05 50.9 3.0 23 210-232 38-60 (266)
473 4eaq_A DTMP kinase, thymidylat 86.5 0.39 1.3E-05 49.1 3.5 27 208-234 25-51 (229)
474 4a82_A Cystic fibrosis transme 86.5 0.83 2.8E-05 54.1 6.9 23 210-232 368-390 (578)
475 3end_A Light-independent proto 86.4 0.37 1.3E-05 52.0 3.5 43 207-252 39-81 (307)
476 1u0j_A DNA replication protein 86.4 0.61 2.1E-05 48.2 4.9 38 191-232 90-127 (267)
477 2d2e_A SUFC protein; ABC-ATPas 86.4 0.35 1.2E-05 50.2 3.1 23 210-232 30-52 (250)
478 1g6h_A High-affinity branched- 86.4 0.33 1.1E-05 50.6 3.0 23 210-232 34-56 (257)
479 1vpl_A ABC transporter, ATP-bi 86.3 0.36 1.2E-05 50.2 3.2 23 210-232 42-64 (256)
480 2v9p_A Replication protein E1; 86.2 0.36 1.2E-05 51.4 3.2 23 210-232 127-149 (305)
481 2yl4_A ATP-binding cassette SU 86.2 0.79 2.7E-05 54.5 6.6 23 210-232 371-393 (595)
482 3bgw_A DNAB-like replicative h 86.2 2 6.7E-05 48.7 9.5 50 209-263 197-246 (444)
483 2zu0_C Probable ATP-dependent 86.2 0.38 1.3E-05 50.4 3.3 23 210-232 47-69 (267)
484 2eyu_A Twitching motility prot 86.2 0.42 1.4E-05 49.9 3.6 108 210-332 26-136 (261)
485 2ocp_A DGK, deoxyguanosine kin 86.1 0.39 1.3E-05 49.6 3.4 23 210-232 3-25 (241)
486 2f9l_A RAB11B, member RAS onco 86.1 0.34 1.2E-05 48.3 2.8 24 209-232 5-28 (199)
487 2ghi_A Transport protein; mult 86.1 0.37 1.3E-05 50.3 3.2 23 210-232 47-69 (260)
488 2yhs_A FTSY, cell division pro 86.1 0.41 1.4E-05 54.2 3.7 27 207-233 291-317 (503)
489 1q3t_A Cytidylate kinase; nucl 86.0 0.38 1.3E-05 49.5 3.2 26 207-232 14-39 (236)
490 1w36_D RECD, exodeoxyribonucle 85.9 1.2 4E-05 53.1 7.8 23 210-232 165-187 (608)
491 1fx0_A ATP synthase alpha chai 85.9 0.95 3.2E-05 51.1 6.5 84 210-298 164-264 (507)
492 2ixe_A Antigen peptide transpo 85.9 0.38 1.3E-05 50.5 3.2 23 210-232 46-68 (271)
493 2qi9_C Vitamin B12 import ATP- 85.8 0.37 1.3E-05 49.8 3.0 23 210-232 27-49 (249)
494 4edh_A DTMP kinase, thymidylat 85.8 0.99 3.4E-05 45.3 6.0 26 210-235 7-32 (213)
495 1q57_A DNA primase/helicase; d 85.7 3.3 0.00011 48.1 11.4 53 208-264 241-293 (503)
496 1nlf_A Regulatory protein REPA 85.6 0.36 1.2E-05 51.2 2.9 23 210-232 31-53 (279)
497 3qf4_A ABC transporter, ATP-bi 85.5 2 6.7E-05 50.9 9.4 23 210-232 370-392 (587)
498 2nq2_C Hypothetical ABC transp 85.5 0.39 1.3E-05 49.9 3.0 23 210-232 32-54 (253)
499 2ce2_X GTPase HRAS; signaling 85.5 0.39 1.3E-05 45.9 2.8 22 211-232 5-26 (166)
500 2yz2_A Putative ABC transporte 85.5 0.41 1.4E-05 50.2 3.2 23 210-232 34-56 (266)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.7e-46 Score=446.83 Aligned_cols=316 Identities=16% Similarity=0.239 Sum_probs=254.3
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhc--cccccccccceEEEEEeCCCC--CHHHHHHH
Q 047556 185 FGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYN--DKEVETFKFDIKAWVCVSEDF--DVLSISRA 260 (1175)
Q Consensus 185 vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~ 260 (1175)
|||+.++++|.++|..... ..+++|+|+||||+||||||+++|+ +.+++. +|+.++||++++.+ ++..+++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-NYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-TBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-cCCcEEEEEECCCCCCCHHHHHHH
Confidence 5999999999999976422 4679999999999999999999998 566776 89999999999885 89999999
Q ss_pred HHHHhcCCCC-------CccchHHHHHHHHHHhcCc-cEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhh
Q 047556 261 ILESITYSSC-------DLKALNEVQVQLKKAVDGK-KIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVA 332 (1175)
Q Consensus 261 il~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 332 (1175)
|+.+++.... +..+.+.+...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHH
Confidence 9999986531 1223456788999999996 9999999999743223332 1799999999999999
Q ss_pred hhcC-CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCHHHHHHHHhhc
Q 047556 333 STME-PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSKRHDAWDEILNSK 411 (1175)
Q Consensus 333 ~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~~ 411 (1175)
..++ ...+|+|++|+++|||+||.++++... .++...+++++|+++|+|+||||+++|+.++.+. .+|...+...
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~ 354 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNK 354 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHH
Confidence 8876 446799999999999999999987543 2456778899999999999999999999998774 3444444443
Q ss_pred ccCCCCCCCchHHHHHhhhcCChhhhhhhh-----------hhccCCCCcccChhHHHHHHHHc--cCccccccCCCCHH
Q 047556 412 ILDLPQRNGILPALSLSYHYLPSHLKRCFS-----------YCAIFPKDYDFEEKELVFLWMAE--GIIQESRNNKKQPE 478 (1175)
Q Consensus 412 ~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~~a~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~~~ 478 (1175)
.+... ...+..++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+...... ...+
T Consensus 355 l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~-~~~~ 428 (549)
T 2a5y_B 355 LESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE-QLDD 428 (549)
T ss_dssp HHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C-CCTH
T ss_pred hhccc-HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCC-CCHH
Confidence 33221 256888899999999999999999 999999999999 8899999 999876533 5677
Q ss_pred HHHHHHHHHHHhCCCccccCC-CCCceEEchhHHHHHHHHhccccc
Q 047556 479 VLGREYFHDLLSRSILQPSSS-NNSKFVMHDLVHDLAQLVSGQTSF 523 (1175)
Q Consensus 479 ~~~~~~~~~L~~~sll~~~~~-~~~~~~mHdlv~~~~~~~~~~~~~ 523 (1175)
++++ ||++|+++||++.... ....|+|||+||+||+++++++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8777 9999999999998653 346799999999999999887664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-39 Score=402.69 Aligned_cols=536 Identities=17% Similarity=0.116 Sum_probs=294.0
Q ss_pred hhhcCCCccEEEecccccccCCCCcc-CCcccccEEEecccccccc-ccc---ccCcccccEEeccCccccccCchhhhc
Q 047556 596 LLSKCRKLRVLSLSRSYITELPKGSM-SGWKHLRYLNLSHTWIRNL-PKS---TCSLINLQILLLRGCYYLLKLPSKMRK 670 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~~~~-~~l~~L~~L~L~~~~i~~l-p~~---i~~L~~L~~L~L~~~~~l~~lp~~i~~ 670 (1175)
.+.++++|++|+|++|.+....+..+ .++++|++|+|++|.+... |.. +.++++|++|++++|......| +..
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~ 198 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTT
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--ccc
Confidence 45566666666666666554332332 5566666666666666543 222 4556666666666653333333 255
Q ss_pred cCCCceeeecCccccccCCccCCCCCCccccCceeeccCC-CccCccccccccccccccccCCccCCCChhhcchhhhcc
Q 047556 671 LINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGT-RSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYE 749 (1175)
Q Consensus 671 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~-~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 749 (1175)
+++|++|++++|.+.+.+|. ++++++|++|++..+.... .+..+..+++|+.|.. ......+.... ..
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-------s~n~l~~~~~~---~~ 267 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-------SSNQFVGPIPP---LP 267 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC-------CSSCCEESCCC---CC
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC-------CCCcccCccCc---cc
Confidence 55666666666654444443 5556666666555544332 2333444555554431 11111111110 03
Q ss_pred cccccccccccccccC-CCC----------------chhHHHHHHhcCCCCCCccEEEEeccCCC-CCCCC-CCCCCCCC
Q 047556 750 NQNLEALSLQWGSQFD-ISR----------------NEDKEELVLGMLKPCTNIKKLTINGYGGK-RFPSW-IGDPSYSK 810 (1175)
Q Consensus 750 ~~~L~~L~l~~~~~~~-~~~----------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~-~~~~~l~~ 810 (1175)
+++|+.|++..+.... ... +.. ....+..+..+++|+.|++++|... .+|.. +.. +++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~--l~~ 344 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK--MRG 344 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE-EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT--CTT
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC-CCccchHHhcCCCccEEECCCCcccCcCCHHHHhc--CCC
Confidence 3444444443322100 000 000 0001112233344444444444332 33322 221 444
Q ss_pred ccEEEEeCCCCCCCCCCCcCCCC-CccEEeeccCcCcceecccc----ccccceEEEccCCccccccc-cCCCCCccEEE
Q 047556 811 MEVLILENCENCTYLPSTVLWSS-SLKMLEIHNCKNLQHLVDEN----NLQLESLRITSCDSLTFIAR-RKLPSSLKRLE 884 (1175)
Q Consensus 811 L~~L~L~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~l~~l~~~~----~~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~ 884 (1175)
|+.|++++|.+.+.+|..+..++ +|+.|+++++.-...++... ...|+.|.+++|.....++. ..-.++|+.|+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 44444444444434443333323 44444444432111111110 12345555544432222111 11123455555
Q ss_pred EecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCC---CCCCCEEeeCCC
Q 047556 885 IENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDG---LHNVQRIDIQRC 961 (1175)
Q Consensus 885 l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~---~~~L~~L~l~~~ 961 (1175)
++++.--..++ .....+++|+.|++++|.....+|..+..+++|++|++++|...+.+|.. +++|+.|++++|
T Consensus 425 Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 425 LSFNYLSGTIP----SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp CCSSEEESCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CcCCcccCccc----HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 55442111111 11224678888898888777777877778888999999988877777764 478888888887
Q ss_pred CCccccccC-CCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCC----------------------
Q 047556 962 PSLVSLAER-GLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEG---------------------- 1018 (1175)
Q Consensus 962 ~~L~~l~~~-~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~---------------------- 1018 (1175)
.-...+|.. ...++|+.|++++|.....+|..+..+++|+.|++++|+..+.+|...
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 544344432 234688999999998877889889999999999999986554555321
Q ss_pred -------------------------------------------------CCCCcceEEEeccCccchhhhhhhccCCCCC
Q 047556 1019 -------------------------------------------------FPNNLVELKIRGVDVKMYKAAIQWGLHRLTS 1049 (1175)
Q Consensus 1019 -------------------------------------------------~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~ 1049 (1175)
.+++|+.|++++| .+.+.+|..+.++++
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N---~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN---MLSGYIPKEIGSMPY 657 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS---CCBSCCCGGGGGCTT
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC---cccccCCHHHhcccc
Confidence 1246777888655 455667888999999
Q ss_pred CCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCCCCCCCcce
Q 047556 1050 LRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEVGLPSSILW 1129 (1175)
Q Consensus 1050 L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~ 1129 (1175)
|+.|++++|.. ...+|... ..+++|+.|+|++ |+++...+..+.++++|+.|+|++|+--..+|..+.+.++..
T Consensus 658 L~~L~Ls~N~l--~g~ip~~l---~~L~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 658 LFILNLGHNDI--SGSIPDEV---GDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp CCEEECCSSCC--CSCCCGGG---GGCTTCCEEECCS-SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred CCEEeCcCCcc--CCCCChHH---hCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence 99999999762 23667654 3568999999999 567744447889999999999999776677898777777887
Q ss_pred eeeccCchhH----HhhccCCCCCCccccCcceEE
Q 047556 1130 LNIWSCPMLE----KEYKRDTGKEWSKIATIPRVC 1160 (1175)
Q Consensus 1130 L~i~~cp~L~----~~~~~~~g~~~~~i~~i~~~~ 1160 (1175)
..+.+||.|- ..|....+++|++|+|+|++.
T Consensus 732 ~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 732 AKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGGCSCTEEESTTSCCCCSCC--------------
T ss_pred HHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 7777876542 278899999999999999763
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.9e-38 Score=372.16 Aligned_cols=284 Identities=18% Similarity=0.243 Sum_probs=227.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccce-EEEEEeCCCCCHHHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDI-KAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i 261 (1175)
..|||++++++|.++|... ...++|+|+||||+||||||+++|++.++.. +|+. ++||++++.++...++..+
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~-~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHH-HHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHH-hCCCcEEEEEeCCCCCHHHHHHHH
Confidence 3599999999999999863 2368999999999999999999998776666 7886 9999999999988888888
Q ss_pred HHHhcCCC------CC-----ccchHHHHHHHHHHh---cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecC
Q 047556 262 LESITYSS------CD-----LKALNEVQVQLKKAV---DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTR 327 (1175)
Q Consensus 262 l~~l~~~~------~~-----~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 327 (1175)
++.++... .+ ..+.+.....+++.+ .++|+||||||||+ .+.|+.+. +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f~-------pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFN-------LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHHH-------SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhhC-------CCeEEEEecc
Confidence 77543211 00 123445566677765 78999999999987 45666542 6899999999
Q ss_pred ChhhhhhcCCCCeeeCC------CCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCC--
Q 047556 328 HSHVASTMEPIQQYNLR------CLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSK-- 399 (1175)
Q Consensus 328 ~~~v~~~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-- 399 (1175)
++.++..+.....|.|+ +|+++|||+||.+.. +.. . .++..+| |+|+||||+++|+.|+.+
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCC
Confidence 99998655444466777 999999999999884 221 1 1122333 999999999999999988
Q ss_pred CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhh-hhhhhhhccCCCCcccChhHHHHHHHHccCccccccCCCCHH
Q 047556 400 RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHL-KRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQPE 478 (1175)
Q Consensus 400 ~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 478 (1175)
+.++|... ....+..+|.+||+.||++. |.||++||+||+++.|+.+.++.+|+++| +
T Consensus 343 s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------------e 401 (1221)
T 1vt4_I 343 TWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------------K 401 (1221)
T ss_dssp SHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------------S
T ss_pred CHHHHhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------------H
Confidence 77888753 12568999999999999999 99999999999999999999999998876 1
Q ss_pred HHHHHHHHHHHhCCCccccCCCCCceEEchhHHHHH
Q 047556 479 VLGREYFHDLLSRSILQPSSSNNSKFVMHDLVHDLA 514 (1175)
Q Consensus 479 ~~~~~~~~~L~~~sll~~~~~~~~~~~mHdlv~~~~ 514 (1175)
+.++.++++|+++|||+... ....|+|||++++++
T Consensus 402 edAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 24788999999999999853 356899999999865
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.5e-36 Score=400.92 Aligned_cols=311 Identities=20% Similarity=0.301 Sum_probs=245.0
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccc-cccccceEEEEEeCCCCC--HH
Q 047556 179 PTERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEV-ETFKFDIKAWVCVSEDFD--VL 255 (1175)
Q Consensus 179 ~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~~--~~ 255 (1175)
+....||||++++++|.++|.... +.+++|+|+||||+||||||+++|++.+. ..++++.++||+++...+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 46799999999999999999999998643 332567888999998543 44
Q ss_pred HHHHHHHHHhcCCCC----CccchHHHHHHHHHHhcCc--cEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh
Q 047556 256 SISRAILESITYSSC----DLKALNEVQVQLKKAVDGK--KIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS 329 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~----~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 329 (1175)
..+..++..+..... ...+.+.+...++..+.++ ||||||||||+. ..|+ ..++||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEcCCH
Confidence 557777777765432 2345677888899999877 999999999863 2222 236799999999999
Q ss_pred hhhhh-cCCCCeeeCCC-CChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCHHHHHHH
Q 047556 330 HVAST-MEPIQQYNLRC-LSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSKRHDAWDEI 407 (1175)
Q Consensus 330 ~v~~~-~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~ 407 (1175)
.++.. ++....+.+.+ |+++||++||...++... +...+++++|+++|+|+||||+++|++|+.+. ..|...
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~ 341 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY 341 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHH
Confidence 99854 45667899996 999999999998884322 22334688999999999999999999998874 346665
Q ss_pred HhhcccCC----CCC-----CCchHHHHHhhhcCChhhhhhhhhhccCCCCcccChhHHHHHHHHccCccccccCCCCHH
Q 047556 408 LNSKILDL----PQR-----NGILPALSLSYHYLPSHLKRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQPE 478 (1175)
Q Consensus 408 ~~~~~~~~----~~~-----~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 478 (1175)
++...... ... +.+..++.+||+.|++++|.||+|||+||+++.|+++.++.+|.++ +
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------------~ 408 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------------T 408 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------------H
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------------H
Confidence 54322111 111 3588999999999999999999999999999999999999999443 4
Q ss_pred HHHHHHHHHHHhCCCccccCCC-CCceEEchhHHHHHHHHhccc
Q 047556 479 VLGREYFHDLLSRSILQPSSSN-NSKFVMHDLVHDLAQLVSGQT 521 (1175)
Q Consensus 479 ~~~~~~~~~L~~~sll~~~~~~-~~~~~mHdlv~~~~~~~~~~~ 521 (1175)
+.++.++++|+++||++....+ ...|+|||+||+|+++.+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 5688999999999999976422 235999999999999997765
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-35 Score=373.53 Aligned_cols=513 Identities=15% Similarity=0.111 Sum_probs=328.5
Q ss_pred HhhhcCCCccEEEecccccccCCCC--ccCCcccccEEEecccccc-cccccc-cCcccccEEeccCccccccCchh---
Q 047556 595 NLLSKCRKLRVLSLSRSYITELPKG--SMSGWKHLRYLNLSHTWIR-NLPKST-CSLINLQILLLRGCYYLLKLPSK--- 667 (1175)
Q Consensus 595 ~~~~~~~~Lr~L~Ls~~~i~~l~~~--~~~~l~~L~~L~L~~~~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~--- 667 (1175)
..|.++++|++|+|++|.+.+..+. .++++++|++|+|++|.+. .+|..+ .++++|++|+|++|......|..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 4578899999999999998764335 7899999999999999887 456555 78999999999999655666666
Q ss_pred hhccCCCceeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhh
Q 047556 668 MRKLINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEIL 747 (1175)
Q Consensus 668 i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 747 (1175)
+.++++|++|++++|.+.+..| +..+++|++|++..+......+.+..+++|+.|+ +.+....+. ....+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~-------Ls~n~l~~~-~~~~l 243 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLD-------ISGNKLSGD-FSRAI 243 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEE-------CCSSCCCSC-HHHHT
T ss_pred hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEE-------CcCCcCCCc-ccHHH
Confidence 7889999999999998665544 4789999999988887666444577788888776 333333222 22346
Q ss_pred cccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEeCCCCCCCCC
Q 047556 748 YENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGK-RFPSWIGDPSYSKMEVLILENCENCTYLP 826 (1175)
Q Consensus 748 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~lp 826 (1175)
..+++|+.|+++.+...... . ...+++|+.|++++|... .+|.++.. .+++|+.|++++|.+.+.+|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~----------~-~~~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPI----------P-PLPLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp TTCSSCCEEECCSSCCEESC----------C-CCCCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCC
T ss_pred hcCCCCCEEECCCCcccCcc----------C-ccccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccc
Confidence 77889999999776431110 1 115788999999988776 77887764 35899999999999888888
Q ss_pred CCcCCCCCccEEeeccCcCcceeccc---cccccceEEEccCCccccccc--cCCCCCccEEEEecCc------------
Q 047556 827 STVLWSSSLKMLEIHNCKNLQHLVDE---NNLQLESLRITSCDSLTFIAR--RKLPSSLKRLEIENCE------------ 889 (1175)
Q Consensus 827 ~~~~~~~~L~~L~L~~~~~l~~l~~~---~~~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~------------ 889 (1175)
..+..+++|+.|+++++.-...++.. ....|+.|++++|.-...++. ..++++|+.|+++++.
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 88888899999999987544344422 345578888877753322221 1122366666665542
Q ss_pred ---CchhhhcCcccc-------CCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCC---CCCCCEE
Q 047556 890 ---NLQHLVYGEEDA-------TSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDG---LHNVQRI 956 (1175)
Q Consensus 890 ---~L~~l~~~~~~~-------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~---~~~L~~L 956 (1175)
+|+.+..+.+.. ...+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|.. +++|+.|
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 222222222211 123456666666666554555555556666666666666655555543 3566666
Q ss_pred eeCCCCCccccccC-CCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCC-CCCCCcceEEEeccCcc
Q 047556 957 DIQRCPSLVSLAER-GLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEE-GFPNNLVELKIRGVDVK 1034 (1175)
Q Consensus 957 ~l~~~~~L~~l~~~-~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~~~ 1034 (1175)
++++|.-...+|.. ...++|+.|++++|.....+|..+..+++|++|++++|...+.+|.. ..+++|+.|++++|...
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 66665333233321 12246677777777665566766777777777777777444445543 23466777777665432
Q ss_pred -chh------------------------------------------------------------------hhhhhccCCC
Q 047556 1035 -MYK------------------------------------------------------------------AAIQWGLHRL 1047 (1175)
Q Consensus 1035 -~l~------------------------------------------------------------------~~~~~~l~~l 1047 (1175)
.++ +.+|..+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 111 1112234455
Q ss_pred CCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCc-ccCcCCCCCCCCCCceeccCCCCCCcCCC-CCCCC
Q 047556 1048 TSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLK-KLSSKGFQSLTSLEFLWIDDCPNLKSFPE-VGLPS 1125 (1175)
Q Consensus 1048 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~-~l~~~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~~ 1125 (1175)
++|+.|++++|.. ...+|.+. ..+++|+.|+|++ |.++ .+| ..+.++++|+.|+|++|..-..+|. ...++
T Consensus 632 ~~L~~LdLs~N~l--~g~ip~~l---~~l~~L~~L~Ls~-N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 632 GSMMFLDMSYNML--SGYIPKEI---GSMPYLFILNLGH-NDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp BCCCEEECCSSCC--BSCCCGGG---GGCTTCCEEECCS-SCCCSCCC-GGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred ccccEEECcCCcc--cccCCHHH---hccccCCEEeCcC-CccCCCCC-hHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 6677777776542 22445433 3446677777777 4555 344 5667777777777777543335554 22345
Q ss_pred CcceeeeccCc
Q 047556 1126 SILWLNIWSCP 1136 (1175)
Q Consensus 1126 sL~~L~i~~cp 1136 (1175)
+|++|++++|+
T Consensus 705 ~L~~L~ls~N~ 715 (768)
T 3rgz_A 705 MLTEIDLSNNN 715 (768)
T ss_dssp CCSEEECCSSE
T ss_pred CCCEEECcCCc
Confidence 67777777765
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-34 Score=362.42 Aligned_cols=556 Identities=16% Similarity=0.087 Sum_probs=364.1
Q ss_pred cceeEEEeeccCCCcchhhHhhhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEeccccccc
Q 047556 536 QKSRHFSYDCSVNDGNSMLEVMHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITE 615 (1175)
Q Consensus 536 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~ 615 (1175)
...+++.+....... .....+..+++|++|.+.++.. ....+..|.++++|++|+|++|.++.
T Consensus 25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l----------------~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTI----------------SKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCC----------------CCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCcc----------------CccCHHHHhcccCcCEEECCCCccCc
Confidence 455666665432221 1123455666677766654421 11234456677777777777777777
Q ss_pred CCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCccC--
Q 047556 616 LPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFGM-- 692 (1175)
Q Consensus 616 l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~-- 692 (1175)
+|+..|+++++|++|+|++|.+..+| ..|+++++|++|+|++|......|..++++++|++|++++|.+.+..|..+
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 77556777777777777777777665 457777777777777774444445556777777777777776433333322
Q ss_pred CCCCCccccCceeeccCCC-ccCccccccccccccccccCCccCCCChhhcchhhh--cccccccccccccccccCCCCc
Q 047556 693 KELKNLQALSNFIVGTGTR-SSGLKDLKSLTFLSGELCISRLENVTISREASEEIL--YENQNLEALSLQWGSQFDISRN 769 (1175)
Q Consensus 693 ~~L~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~ 769 (1175)
..+++|+.|++..+..... +..+..+.+|+.+. +.+............ ....+|+.|.+.++.....
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-------l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~--- 237 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF-------LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT--- 237 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE-------CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE---
T ss_pred cccccccEEECCCCcccccChhhhhhhhhhhhhh-------ccccccChhhHHHHHHHhhhccccEEEccCCccccc---
Confidence 2446677766665544332 22344444444443 122222211111110 1235677777765533111
Q ss_pred hhHHHHHHhcCCCC--CCccEEEEeccCCCCCC-CCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcC-
Q 047556 770 EDKEELVLGMLKPC--TNIKKLTINGYGGKRFP-SWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKN- 845 (1175)
Q Consensus 770 ~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~- 845 (1175)
....+..+ ++|+.|++++|....++ .++. .+++|+.|++++|.+.+..|..+..+++|+.|+++++..
T Consensus 238 ------~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 238 ------SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp ------CTTTTGGGGGSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred ------ChhHhhccCcCCCCEEECCCCCcCccCccccc--CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 11222333 35999999988776665 4454 388999999999988888887787789999999986431
Q ss_pred -------ccee---ccccccccceEEEccCCcccccccc--CCCCCccEEEEecCc-CchhhhcCccccCCCCCCcCeEE
Q 047556 846 -------LQHL---VDENNLQLESLRITSCDSLTFIARR--KLPSSLKRLEIENCE-NLQHLVYGEEDATSSSVTLKRLG 912 (1175)
Q Consensus 846 -------l~~l---~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~-~L~~l~~~~~~~~~~~~~L~~L~ 912 (1175)
+..+ .......|+.|+++++.-- .+... .-.++|+.|+++++. .+..++...... ...++|+.|+
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~-~~~~~L~~L~ 387 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS-LAHSPLHILN 387 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG-GTTSCCCEEE
T ss_pred cccccccccccChhhcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcc-cccCcCceEE
Confidence 1111 1123355888888776432 22211 122577888777654 122222111110 0135799999
Q ss_pred eecCCCCCcCCCCCCCcCccceEEeecCCCCCccC----CCCCCCCEEeeCCCCCccccccCCC--CCCccEEEEccCcc
Q 047556 913 IRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIP----DGLHNVQRIDIQRCPSLVSLAERGL--PITISSVRIWSCEK 986 (1175)
Q Consensus 913 l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p----~~~~~L~~L~l~~~~~L~~l~~~~~--~~~L~~L~l~~~~~ 986 (1175)
+++|......|..+..+++|+.|++++|.....+| ..+++|+.|++++|. +..++...+ .++|+.|++.+|..
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccc
Confidence 99998777777778888999999999998766555 356899999999984 555544333 36899999998864
Q ss_pred --cccCccccCCCCcccEEEeeCCCCCCCCCCCC--CCCCcceEEEeccCccchhhh-hh----hccCCCCCCCeeEecc
Q 047556 987 --LEALPNDLHKLNSLEHLYLQRCPSIVRFPEEG--FPNNLVELKIRGVDVKMYKAA-IQ----WGLHRLTSLRRLWIEG 1057 (1175)
Q Consensus 987 --l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~~L~~L~l~~~~~~~l~~~-~~----~~l~~l~~L~~L~l~~ 1057 (1175)
+..+|..+..+++|+.|++++| .++.++... .+++|++|++++|....+... +| ..|.++++|+.|++++
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred cccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 3578889999999999999999 677777653 468999999998887665321 11 2378899999999999
Q ss_pred CCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCCC---CCCCcceeeecc
Q 047556 1058 CDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEVG---LPSSILWLNIWS 1134 (1175)
Q Consensus 1058 c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~---~~~sL~~L~i~~ 1134 (1175)
|. +..+|.+.| ..+++|+.|++++ |+++.+|...|.++++|+.|++++ +.++.++... .+++|+.|++++
T Consensus 546 N~---l~~i~~~~~--~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 546 NG---FDEIPVEVF--KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp SC---CCCCCTTTT--TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CC---CCCCCHHHc--ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEccC
Confidence 86 667887654 4568999999988 799999988889999999999999 4788887632 347899999999
Q ss_pred Cch
Q 047556 1135 CPM 1137 (1175)
Q Consensus 1135 cp~ 1137 (1175)
||-
T Consensus 619 N~~ 621 (680)
T 1ziw_A 619 NPF 621 (680)
T ss_dssp CCC
T ss_pred CCc
Confidence 873
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-32 Score=342.82 Aligned_cols=515 Identities=18% Similarity=0.125 Sum_probs=362.9
Q ss_pred HHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCc-hhhhc
Q 047556 593 FSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLP-SKMRK 670 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~ 670 (1175)
.+..|.++++|++|+|++|.++.+++..|+++++|++|+|++|.+..+|. .|+++++|++|+|++| .+..+| ..|++
T Consensus 41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 119 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVK 119 (680)
T ss_dssp CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTT
T ss_pred CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccc
Confidence 44568899999999999999999988899999999999999999999987 5999999999999999 455554 67999
Q ss_pred cCCCceeeecCccccccCCccCCCCCCccccCceeeccCCCccC---ccccccccccccccccCCccCCCChhhcchhhh
Q 047556 671 LINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSG---LKDLKSLTFLSGELCISRLENVTISREASEEIL 747 (1175)
Q Consensus 671 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~---l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 747 (1175)
+++|++|++++|.+.+..|..++++++|+.|++..+.....+.. ...+++|+.|.. ......+ .....+
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L-------~~n~l~~-~~~~~~ 191 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL-------SSNQIKE-FSPGCF 191 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC-------TTCCCCC-BCTTGG
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC-------CCCcccc-cChhhh
Confidence 99999999999997666777799999999998887765543321 223456666642 2221111 122335
Q ss_pred cccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEeCCCCCCCCC
Q 047556 748 YENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRF-PSWIGDPSYSKMEVLILENCENCTYLP 826 (1175)
Q Consensus 748 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~lp 826 (1175)
..+.+|+.|.+..... . ..........+ ..++|+.|+++++..... |.++.....++|+.|++++|.+.+..|
T Consensus 192 ~~l~~L~~L~l~~~~l---~--~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 192 HAIGRLFGLFLNNVQL---G--PSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp GGSSEECEEECTTCCC---H--HHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred hhhhhhhhhhcccccc---C--hhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc
Confidence 5677788887754332 1 00011111111 347899999999877654 445543112459999999999988888
Q ss_pred CCcCCCCCccEEeeccCcCcceeccc---cccccceEEEccCCccccccc----------cCCCCCccEEEEecCcCchh
Q 047556 827 STVLWSSSLKMLEIHNCKNLQHLVDE---NNLQLESLRITSCDSLTFIAR----------RKLPSSLKRLEIENCENLQH 893 (1175)
Q Consensus 827 ~~~~~~~~L~~L~L~~~~~l~~l~~~---~~~~L~~L~l~~c~~l~~~~~----------~~~~~~L~~L~l~~~~~L~~ 893 (1175)
..+..+++|+.|+++++. +..+... ....|+.|++.++..-..++. ....++|+.|+++++. +..
T Consensus 266 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~ 343 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPG 343 (680)
T ss_dssp TTTTTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCC
T ss_pred ccccCcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCC
Confidence 888888999999999864 4444322 345688888876532211110 1122566667666653 222
Q ss_pred hhcCccccCCCCCCcCeEEeecCCC-CCcCCCC-CC--CcCccceEEeecCCCCCccCCC---CCCCCEEeeCCCCCccc
Q 047556 894 LVYGEEDATSSSVTLKRLGIRRCPE-LTSLSPG-IR--LPEALEQLYIWDCQKLESIPDG---LHNVQRIDIQRCPSLVS 966 (1175)
Q Consensus 894 l~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~-~~--~~~~L~~L~l~~~~~l~~~p~~---~~~L~~L~l~~~~~L~~ 966 (1175)
+.. .....+++|++|++++|.. ...++.. +. ..++|+.|++++|......|.. +++|+.|+++++.--..
T Consensus 344 ~~~---~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 344 IKS---NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp CCT---TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred CCh---hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 211 1223478899999998853 2233322 11 1257999999999876655554 57899999998754444
Q ss_pred cccCC--CCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCC---CCCCC-CCCCCcceEEEeccCccchhhhh
Q 047556 967 LAERG--LPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIV---RFPEE-GFPNNLVELKIRGVDVKMYKAAI 1040 (1175)
Q Consensus 967 l~~~~--~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~---~lp~~-~~~~~L~~L~l~~~~~~~l~~~~ 1040 (1175)
++... ...+|++|++++|......+..|..+++|+.|++++| .+. .+|.. ..+++|+.|++++|....+.
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~--- 496 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANIN--- 496 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC---
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-cccccccCCcccccCCCCCEEECCCCCCCcCC---
Confidence 44322 2368999999999866666778899999999999998 443 33432 34678999999887765443
Q ss_pred hhccCCCCCCCeeEeccCCCccccccchhhh------hccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCC
Q 047556 1041 QWGLHRLTSLRRLWIEGCDDDEAECFPDEEM------RMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPN 1114 (1175)
Q Consensus 1041 ~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~------~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 1114 (1175)
+..|..+++|+.|++++|. +..++...+ .+..+++|+.|++++ |+++.+|...|.++++|+.|++++ +.
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~-N~ 571 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNN---LARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL-NN 571 (680)
T ss_dssp TTTTTTCTTCCEEECCSSC---CGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred hhhhccccccCEEeCCCCC---ccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCcceeECCC-CC
Confidence 4568899999999999987 444432211 023568999999999 689999977899999999999998 67
Q ss_pred CCcCCCCC--CCCCcceeeeccCc
Q 047556 1115 LKSFPEVG--LPSSILWLNIWSCP 1136 (1175)
Q Consensus 1115 l~~lp~~~--~~~sL~~L~i~~cp 1136 (1175)
++.+|... ..++|+.|++++|.
T Consensus 572 l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 572 LNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCcCCHhHhCCCCCCCEEECCCCc
Confidence 88988743 35799999999983
No 8
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=339.33 Aligned_cols=304 Identities=21% Similarity=0.324 Sum_probs=229.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccc-ccccc-ceEEEEEeCCCCCHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEV-ETFKF-DIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~f-~~~~wv~~s~~~~~~~~~ 258 (1175)
.+.||||+.++++|.++|.... +..++|+|+||||+||||||++++++.+. .. +| +.++|++++.. +...++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEG-CFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHH-HCTTCEEEEEEESC-CHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHh-hCCCceEEEECCCC-chHHHH
Confidence 3569999999999999997542 45689999999999999999999997654 44 67 58999999875 333333
Q ss_pred H---HHHHHhcCC----CCCccchHHHHHHHHHHhcC--ccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh
Q 047556 259 R---AILESITYS----SCDLKALNEVQVQLKKAVDG--KKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS 329 (1175)
Q Consensus 259 ~---~il~~l~~~----~~~~~~~~~~~~~l~~~l~~--~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 329 (1175)
. .++..++.. .....+.+.....++..+.+ +++||||||+|+. ..+ .. ..+|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l----~~---l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVL----KA---FDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHH----HT---TCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHH----HH---hcCCCeEEEECCCc
Confidence 3 334455421 12234556677778877765 7999999999862 222 22 25689999999999
Q ss_pred hhhhhcCCCCeeeC---CCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCHHHHHH
Q 047556 330 HVASTMEPIQQYNL---RCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSKRHDAWDE 406 (1175)
Q Consensus 330 ~v~~~~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~ 406 (1175)
.++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|..
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHH
Confidence 9886544 234444 5899999999999988532 112234578999999999999999999998773 35766
Q ss_pred HHhhcccCC----C-----CCCCchHHHHHhhhcCChhhhhhhhhhccCCCCcccChhHHHHHHHHccCccccccCCCCH
Q 047556 407 ILNSKILDL----P-----QRNGILPALSLSYHYLPSHLKRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNKKQP 477 (1175)
Q Consensus 407 ~~~~~~~~~----~-----~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 477 (1175)
.+....... . ....+..++..||+.||++.|.||++||+||+++.|+.+.+...|.++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------- 407 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------- 407 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------------
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------------
Confidence 655322111 1 113678899999999999999999999999999999999999999432
Q ss_pred HHHHHHHHHHHHhCCCccccCC-CCCceEEchhHHHHHHHHhc
Q 047556 478 EVLGREYFHDLLSRSILQPSSS-NNSKFVMHDLVHDLAQLVSG 519 (1175)
Q Consensus 478 ~~~~~~~~~~L~~~sll~~~~~-~~~~~~mHdlv~~~~~~~~~ 519 (1175)
.+.++.++.+|+++|||+.... ....|+||+++|++++....
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 3457889999999999986532 23479999999999998843
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5e-32 Score=333.41 Aligned_cols=352 Identities=18% Similarity=0.138 Sum_probs=188.7
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccc-cCchhhhcc
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLL-KLPSKMRKL 671 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L 671 (1175)
+..|.++++|++|+|++|.++.+++..|+++++|++|+|++|.+..+| ..++++++|++|+|++|.... .+|..++++
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l 152 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc
Confidence 344566666666666666666665566666666666666666666554 456666666666666663222 456666666
Q ss_pred CCCceeeecCccccccCCccCCCCCCcc----ccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhh
Q 047556 672 INLRHLDITGAYLIKEMPFGMKELKNLQ----ALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEIL 747 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~----~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 747 (1175)
++|++|++++|.+....|..++.+++|+ .|++..+.....+.......+|+.|. +......+......+
T Consensus 153 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~-------L~~n~~~~~~~~~~~ 225 (606)
T 3vq2_A 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT-------LRGNFNSSNIMKTCL 225 (606)
T ss_dssp TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE-------EESCCSCHHHHHHHH
T ss_pred CCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee-------ccCCccchhHHHHHh
Confidence 6666666666664444444555555554 34444443333332222222344333 222222222223334
Q ss_pred cccccccccccccccccCCC------------------------CchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCC
Q 047556 748 YENQNLEALSLQWGSQFDIS------------------------RNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWI 803 (1175)
Q Consensus 748 ~~~~~L~~L~l~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 803 (1175)
..+..|+.+.+.++...... .......... .+..+++|+.|++.++....+| ++
T Consensus 226 ~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l~-~l 303 (606)
T 3vq2_A 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKYLE-DV 303 (606)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCCCC-CC
T ss_pred ccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc-ccccCCCCCEEEecCccchhhh-hc
Confidence 44444444443322110000 0000000111 1555677777777777777666 44
Q ss_pred CCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEE
Q 047556 804 GDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRL 883 (1175)
Q Consensus 804 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L 883 (1175)
.. +++|+.|++++|.+ +.+|.. .+++|+.|+++++..+..+.... .++|+.|
T Consensus 304 ~~--~~~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~-----------------------l~~L~~L 355 (606)
T 3vq2_A 304 PK--HFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSISFKKVA-----------------------LPSLSYL 355 (606)
T ss_dssp CT--TCCCSEEEEESCCC-SSCCCC--CCSSCCEEEEESCSSCEECCCCC-----------------------CTTCCEE
T ss_pred cc--cccCCEEEcccccC-cccccC--CCCccceeeccCCcCccchhhcc-----------------------CCCCCEE
Confidence 43 67777777777777 666644 44777777777664443332222 2456666
Q ss_pred EEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccC-C---CCCCCCEEeeC
Q 047556 884 EIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIP-D---GLHNVQRIDIQ 959 (1175)
Q Consensus 884 ~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p-~---~~~~L~~L~l~ 959 (1175)
+++++. ++.+... ......+++|+.|++++|. +..+|..+..+++|+.|++++|......| . .+++|+.|+++
T Consensus 356 ~ls~n~-l~~~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 356 DLSRNA-LSFSGCC-SYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp ECCSSC-EEEEEEC-CHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred ECcCCc-cCCCcch-hhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 665543 2211100 0111236788899998885 55566777788889999999887655544 2 23455555554
Q ss_pred CCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCC
Q 047556 960 RCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRC 1008 (1175)
Q Consensus 960 ~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c 1008 (1175)
+| ......|..+..+++|++|++++|
T Consensus 433 ~n-----------------------~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 433 YT-----------------------NTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp TS-----------------------CCEECCTTTTTTCTTCCEEECTTC
T ss_pred CC-----------------------CCCccchhhhcCCCCCCEEECCCC
Confidence 44 333334445555666666666665
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-32 Score=335.86 Aligned_cols=503 Identities=16% Similarity=0.110 Sum_probs=330.8
Q ss_pred cceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccc
Q 047556 561 QHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL 640 (1175)
Q Consensus 561 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l 640 (1175)
++++.|.+.++.. ....+..|.++++|++|+|++|.++.+++..|.++++|++|+|++|.++.+
T Consensus 32 ~~l~~L~Ls~n~l----------------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 32 SSTKNIDLSFNPL----------------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp TTCCEEECTTSCC----------------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred CCcCEEECCCCCc----------------CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc
Confidence 6677776665532 223345678889999999999999888778889999999999999988877
Q ss_pred -cccccCcccccEEeccCccccccCc-hhhhccCCCceeeecCccccc-cCCccCCCCCCccccCceeeccCCC-ccCcc
Q 047556 641 -PKSTCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHLDITGAYLIK-EMPFGMKELKNLQALSNFIVGTGTR-SSGLK 716 (1175)
Q Consensus 641 -p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~-~~~l~ 716 (1175)
|..|+++++|++|+|++| .+..+| ..++++++|++|++++|.+.. .+|..++++++|++|++..+..... +..+.
T Consensus 96 ~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred ChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 778899999999999998 455554 668899999999999988544 5788889999999998887765543 22345
Q ss_pred ccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCC
Q 047556 717 DLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGG 796 (1175)
Q Consensus 717 ~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 796 (1175)
.+.+|+..-..+. +....... .....+. ..+|+.|++.++.. ........+..+++|+.+.+.....
T Consensus 175 ~l~~L~~~l~~L~---l~~n~l~~-~~~~~~~-~~~L~~L~L~~n~~--------~~~~~~~~~~~l~~L~~l~l~~~~~ 241 (606)
T 3vq2_A 175 FLRENPQVNLSLD---MSLNPIDF-IQDQAFQ-GIKLHELTLRGNFN--------SSNIMKTCLQNLAGLHVHRLILGEF 241 (606)
T ss_dssp HHHHCTTCCCEEE---CTTCCCCE-ECTTTTT-TCEEEEEEEESCCS--------CHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred hhhccccccceee---ccCCCcce-eCccccc-CceeeeeeccCCcc--------chhHHHHHhcccccccccccccccc
Confidence 5554442110111 11111111 1111122 23677777765432 1223344455667777776654322
Q ss_pred CCC------CCC-CCCCCCCCccEEEE-eCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCcc
Q 047556 797 KRF------PSW-IGDPSYSKMEVLIL-ENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSL 868 (1175)
Q Consensus 797 ~~~------p~~-~~~~~l~~L~~L~L-~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l 868 (1175)
... +.. +....--.++.+.+ ..+.+.+.+|. +..+++|+.|+++++. +..++
T Consensus 242 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~l~------------------ 301 (606)
T 3vq2_A 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS-IKYLE------------------ 301 (606)
T ss_dssp TTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC-CCCCC------------------
T ss_pred ccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCcc-chhhh------------------
Confidence 111 100 00000113455555 44445555555 4555777777777643 12221
Q ss_pred ccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCc--c
Q 047556 869 TFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLES--I 946 (1175)
Q Consensus 869 ~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~--~ 946 (1175)
.....++|+.|.+++|.. ..++. . .+++|+.|++++|.....+ .+..+++|++|++++|..... +
T Consensus 302 ----~l~~~~~L~~L~l~~n~l-~~lp~-----~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 302 ----DVPKHFKWQSLSIIRCQL-KQFPT-----L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp ----CCCTTCCCSEEEEESCCC-SSCCC-----C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred ----hccccccCCEEEcccccC-ccccc-----C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch
Confidence 112224677777777654 44431 1 3677888888888655544 334677888888888764432 1
Q ss_pred CC---CCCCCCEEeeCCCCCcccccc-CCCCCCccEEEEccCcccccCc-cccCCCCcccEEEeeCCCCCCCCCCC-CCC
Q 047556 947 PD---GLHNVQRIDIQRCPSLVSLAE-RGLPITISSVRIWSCEKLEALP-NDLHKLNSLEHLYLQRCPSIVRFPEE-GFP 1020 (1175)
Q Consensus 947 p~---~~~~L~~L~l~~~~~L~~l~~-~~~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~ 1020 (1175)
|. .+++|+.|++++|. +..++. .....+|+.|++++|......| ..+..+++|++|++++|......|.. ..+
T Consensus 369 ~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp CHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred hhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 32 45788888888764 555552 1223688999999887666666 57899999999999999544434432 346
Q ss_pred CCcceEEEeccCccchhh-hhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCC
Q 047556 1021 NNLVELKIRGVDVKMYKA-AIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQ 1099 (1175)
Q Consensus 1021 ~~L~~L~l~~~~~~~l~~-~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~ 1099 (1175)
++|++|++++|.. .+ ..|..|.++++|+.|++++|. +..++...+ ..+++|++|++++ |.++.+++..+.
T Consensus 448 ~~L~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~~~~~~~~ 518 (606)
T 3vq2_A 448 TSLNTLKMAGNSF---KDNTLSNVFANTTNLTFLDLSKCQ---LEQISWGVF--DTLHRLQLLNMSH-NNLLFLDSSHYN 518 (606)
T ss_dssp TTCCEEECTTCEE---GGGEECSCCTTCTTCCEEECTTSC---CCEECTTTT--TTCTTCCEEECCS-SCCSCEEGGGTT
T ss_pred CCCCEEECCCCcC---CCcchHHhhccCCCCCEEECCCCc---CCccChhhh--cccccCCEEECCC-CcCCCcCHHHcc
Confidence 8999999976644 33 246678999999999999986 445554433 4568999999999 578888668899
Q ss_pred CCCCCCceeccCCCCCCcCCCC--CCCCCcceeeeccCch
Q 047556 1100 SLTSLEFLWIDDCPNLKSFPEV--GLPSSILWLNIWSCPM 1137 (1175)
Q Consensus 1100 ~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~cp~ 1137 (1175)
++++|+.|+|++| .++.+|.. .++++|++|++++||-
T Consensus 519 ~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 519 QLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 9999999999995 58888873 3355799999998763
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-31 Score=329.01 Aligned_cols=472 Identities=15% Similarity=0.106 Sum_probs=245.4
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccC-chhhhcc
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKL-PSKMRKL 671 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L 671 (1175)
+..|.++++|++|+|++|.+..+++..|.++++|++|+|++|.+..+ |..|+++++|++|+|++| .+..+ |..++++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l 128 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQ 128 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTC
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhccC
Confidence 44566777777777777777766656677777777777777777655 556777777777777777 34443 4556777
Q ss_pred CCCceeeecCccccccCCccCCCCCCccccCceeeccCCC-ccCccccccccccccccccCCccCCCChhhcchhhhccc
Q 047556 672 INLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTR-SSGLKDLKSLTFLSGELCISRLENVTISREASEEILYEN 750 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 750 (1175)
++|++|++++|.+...-+..+..+++|+.|++..+..... +..+..+++|+.+...+.-..+. .... .....
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~-----~~~~--~~~~~ 201 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-----GIEP--GAFDS 201 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC-----EECT--TTTTT
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC-----ccCh--hHhhh
Confidence 7777777777764331212333467777776666554432 22344455554221111111111 1000 01112
Q ss_pred ccccccccccccc---------------------cCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCC
Q 047556 751 QNLEALSLQWGSQ---------------------FDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYS 809 (1175)
Q Consensus 751 ~~L~~L~l~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~ 809 (1175)
..|+.|++..+.. ....... .....+..+.+ .+|+.|++.++....++..... .++
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~-i~~~~~~~l~~-~~L~~L~l~~n~l~~~~~~~~~-~l~ 278 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED-ISPAVFEGLCE-MSVESINLQKHYFFNISSNTFH-CFS 278 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC-CCGGGGGGGGG-SEEEEEECTTCCCSSCCTTTTT-TCT
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccc-cChhHhchhhc-CceeEEEeecCccCccCHHHhc-ccc
Confidence 3445554433211 0000000 00000111111 1455555555555544443221 255
Q ss_pred CccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCc
Q 047556 810 KMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCE 889 (1175)
Q Consensus 810 ~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 889 (1175)
+|+.|++++|.+. .+|..+..+++|+.|+++++. +..+...
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~-l~~~~~~------------------------------------- 319 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK-FENLCQI------------------------------------- 319 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC-CSBGGGG-------------------------------------
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCC-cCcCchh-------------------------------------
Confidence 5555555555543 344444444555555555432 1111000
Q ss_pred CchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCC-CCCcCccceEEeecCCCCCcc--C---CCCCCCCEEeeCCCCC
Q 047556 890 NLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPG-IRLPEALEQLYIWDCQKLESI--P---DGLHNVQRIDIQRCPS 963 (1175)
Q Consensus 890 ~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~~--p---~~~~~L~~L~l~~~~~ 963 (1175)
....+++|+.|++++|.....++.. +..+++|++|++++|...... + ..+++|+.|++++|.
T Consensus 320 -----------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~- 387 (606)
T 3t6q_A 320 -----------SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE- 387 (606)
T ss_dssp -----------CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-
T ss_pred -----------hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-
Confidence 0111334444444444333233222 334444444444444432221 1 123444445444432
Q ss_pred ccccccCCC--CCCccEEEEccCcccccCcc-ccCCCCcccEEEeeCCCCCCCCCCC--CCCCCcceEEEeccCccchhh
Q 047556 964 LVSLAERGL--PITISSVRIWSCEKLEALPN-DLHKLNSLEHLYLQRCPSIVRFPEE--GFPNNLVELKIRGVDVKMYKA 1038 (1175)
Q Consensus 964 L~~l~~~~~--~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~~~~l~~ 1038 (1175)
+..++...+ .++|+.|++++|......|. .+..+++|++|++++| .+...+.. ..+++|++|++++|.......
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence 222221111 24566666666654444333 3677888888888887 44443332 235778888887665543211
Q ss_pred hhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcC
Q 047556 1039 AIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSF 1118 (1175)
Q Consensus 1039 ~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l 1118 (1175)
..+..+..+++|+.|++++|. +..++...+ ..+++|+.|++++ |+++.+++..+.++++| .|++++| .++.+
T Consensus 467 ~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~ 538 (606)
T 3t6q_A 467 QKTNSLQTLGRLEILVLSFCD---LSSIDQHAF--TSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-HISII 538 (606)
T ss_dssp CSSCGGGGCTTCCEEECTTSC---CCEECTTTT--TTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-CCCCC
T ss_pred ccchhhccCCCccEEECCCCc---cCccChhhh--ccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-ccccc
Confidence 123457788899999999876 445544332 3557889999988 57777776788888999 9999985 56666
Q ss_pred CCCC--CCCCcceeeeccCc
Q 047556 1119 PEVG--LPSSILWLNIWSCP 1136 (1175)
Q Consensus 1119 p~~~--~~~sL~~L~i~~cp 1136 (1175)
+... ..++|+.|++++||
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCC
T ss_pred CHhhcccCCCCCEEeCCCCC
Confidence 5532 24688999998876
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=327.91 Aligned_cols=486 Identities=18% Similarity=0.100 Sum_probs=256.9
Q ss_pred HhhhcCCCccEEEecccc-cccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchh--hhc
Q 047556 595 NLLSKCRKLRVLSLSRSY-ITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSK--MRK 670 (1175)
Q Consensus 595 ~~~~~~~~Lr~L~Ls~~~-i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~ 670 (1175)
..|.++++|++|+|++|. +..+++..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.....+|.. +++
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 345566666666666663 3444445566666666666666666544 555666666666666666333334443 556
Q ss_pred cCCCceeeecCccccccCC-ccCCCCCCccccCceeeccCC-CccCcccc--ccccccccccccCCccCCCChhhcchhh
Q 047556 671 LINLRHLDITGAYLIKEMP-FGMKELKNLQALSNFIVGTGT-RSSGLKDL--KSLTFLSGELCISRLENVTISREASEEI 746 (1175)
Q Consensus 671 L~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~-~~~~l~~l--~~L~~L~~~l~~~~l~~~~~~~~~~~~~ 746 (1175)
+++|++|++++|.+.+..| ..++++++|+.|++..+.... .+..+..+ ++|+.|.. ........... .
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L-------~~n~l~~~~~~-~ 193 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL-------AANSLYSRVSV-D 193 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE-------CCSBSCCCCCC-C
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC-------CCCcccccccc-c
Confidence 6666666666665333222 345666666666555544322 12223333 33333321 11111110000 0
Q ss_pred hcc------cccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCC---------C-CCCCCCCCCCC
Q 047556 747 LYE------NQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKR---------F-PSWIGDPSYSK 810 (1175)
Q Consensus 747 l~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---------~-p~~~~~~~l~~ 810 (1175)
+.. ...|+.|+++.+....... ...........+..|.+..+.... . +..+.....++
T Consensus 194 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~------~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 194 WGKCMNPFRNMVLEILDVSGNGWTVDIT------GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCSSSCTTTTCCBSEEBCSSCCSSTTTT------SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred hhhcCCccccCceeEEecCCCcCchhHH------HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 011 1125555554332100000 000011112334444443111000 0 01111111245
Q ss_pred ccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcC
Q 047556 811 MEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCEN 890 (1175)
Q Consensus 811 L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~ 890 (1175)
|+.|++++|.+.+..|..+..+++|+.|+++++. +..+.... ..-.++|+.|+++++.
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~--------------------~~~l~~L~~L~Ls~N~- 325 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEA--------------------FYGLDNLQVLNLSYNL- 325 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTT--------------------TTTCSSCCEEEEESCC-
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHH--------------------hcCCCCCCEEECCCCC-
Confidence 6666666666655555555555666666666532 22221110 0112456666666643
Q ss_pred chhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccC
Q 047556 891 LQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAER 970 (1175)
Q Consensus 891 L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~ 970 (1175)
+..+.. .....+++|+.|++++|......+..+..+++|+.|++++|... .++. +++|+.|+++++ .++.++..
T Consensus 326 l~~~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~-~~~L~~L~l~~N-~l~~l~~~ 399 (844)
T 3j0a_A 326 LGELYS---SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF-IPSIPDIFLSGN-KLVTLPKI 399 (844)
T ss_dssp CSCCCS---CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS-CCSCSEEEEESC-CCCCCCCC
T ss_pred CCccCH---HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC-CCCcchhccCCC-Cccccccc
Confidence 222211 12234667788888777543333344566777888888777543 3333 677777777775 44444432
Q ss_pred CCCCCccEEEEccCcccccCc--cccCCCCcccEEEeeCCCCCCCCCCC---CCCCCcceEEEeccCccchh--hhhhhc
Q 047556 971 GLPITISSVRIWSCEKLEALP--NDLHKLNSLEHLYLQRCPSIVRFPEE---GFPNNLVELKIRGVDVKMYK--AAIQWG 1043 (1175)
Q Consensus 971 ~~~~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~~~~~~l~--~~~~~~ 1043 (1175)
..+++.|+++++. +..++ ..+.++++|+.|++++| .+..++.. ..+++|+.|++++|...... +..+..
T Consensus 400 --~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 400 --NLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp --CTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred --ccccceeecccCc-cccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhh
Confidence 3467777777663 33333 23457888888888888 55544332 23478888888877665332 222445
Q ss_pred cCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCCCC
Q 047556 1044 LHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEVGL 1123 (1175)
Q Consensus 1044 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~ 1123 (1175)
|.++++|+.|++++|. +..++...+ ..+++|+.|+|++ |+++.+++..+. ++|+.|++++ +.++.++...
T Consensus 476 ~~~l~~L~~L~Ls~N~---l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~l~~~~~~--~~L~~L~Ls~-N~l~~~~~~~- 545 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNY---LNSLPPGVF--SHLTALRGLSLNS-NRLTVLSHNDLP--ANLEILDISR-NQLLAPNPDV- 545 (844)
T ss_dssp SSCBCCEECCCCCHHH---HTTCCTTSS--SSCCSCSEEEEES-CCCSSCCCCCCC--SCCCEEEEEE-ECCCCCCSCC-
T ss_pred hcCcccccEEECCCCc---ccccChhHc--cchhhhheeECCC-CCCCccChhhhh--ccccEEECCC-CcCCCCChhH-
Confidence 7788888888888865 566666543 4567888888888 688888765554 7888888888 4566655433
Q ss_pred CCCcceeeeccCc
Q 047556 1124 PSSILWLNIWSCP 1136 (1175)
Q Consensus 1124 ~~sL~~L~i~~cp 1136 (1175)
.++|+.|+++++|
T Consensus 546 ~~~L~~l~l~~Np 558 (844)
T 3j0a_A 546 FVSLSVLDITHNK 558 (844)
T ss_dssp CSSCCEEEEEEEC
T ss_pred hCCcCEEEecCCC
Confidence 3578888888755
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=2e-30 Score=319.13 Aligned_cols=502 Identities=15% Similarity=0.089 Sum_probs=339.2
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
+++++|+|++|.++.+++..|+++++|++|+|++|.+..+ |..|.++++|++|+|++|......|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3789999999999999888999999999999999999977 778999999999999999655666888999999999999
Q ss_pred cCccccccCCccCCCCCCccccCceeeccCCCc-cCccccccccccccccccCCccCCCChhhcchhhhccccccccccc
Q 047556 680 TGAYLIKEMPFGMKELKNLQALSNFIVGTGTRS-SGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSL 758 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~-~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 758 (1175)
++|.+....|..++++++|++|++..+...... +.+..+++|+ .|++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--------------------------------~L~L 160 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK--------------------------------VLDF 160 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC--------------------------------EEEC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC--------------------------------EEEc
Confidence 999955444677999999999988776554421 1222233333 3333
Q ss_pred ccccccCCCCchhHHHHHHhcCCCCCCcc--EEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCcc
Q 047556 759 QWGSQFDISRNEDKEELVLGMLKPCTNIK--KLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLK 836 (1175)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 836 (1175)
+.+..... ....+..+++|+ .|++++|....++...+. ..+|+.|++++|......+..... ..++
T Consensus 161 ~~n~l~~~---------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~-~~l~ 228 (606)
T 3t6q_A 161 QNNAIHYL---------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKN-STIQ 228 (606)
T ss_dssp CSSCCCEE---------CHHHHHTTTTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCSCHHHHHHHTTT-CEEE
T ss_pred ccCccccc---------ChhhhhhhcccceeEEecCCCccCccChhHhh--hccccccccCCchhHHHHhhhccc-cchh
Confidence 32221000 011223345555 667777766666555443 467778887777522111111111 2333
Q ss_pred EEeeccCcCcceecccc-------ccccceEEEccCCcccccccc--CCCCCccEEEEecCcCchhhhcCccccCCCCCC
Q 047556 837 MLEIHNCKNLQHLVDEN-------NLQLESLRITSCDSLTFIARR--KLPSSLKRLEIENCENLQHLVYGEEDATSSSVT 907 (1175)
Q Consensus 837 ~L~L~~~~~l~~l~~~~-------~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~ 907 (1175)
.+.+..+..+....... ...++.|++.++. +..++.. .-.++|+.|+++++. ++.++.. ...+++
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~----l~~l~~ 302 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATH-LSELPSG----LVGLST 302 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSC-CSCCCSS----CCSCTT
T ss_pred heechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCc-cCCCChh----hccccc
Confidence 34443333332221111 1146777777763 3333321 223688888888863 5544332 234789
Q ss_pred cCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCC----CCCCCCEEeeCCCCCccccc----cCCCCCCccEE
Q 047556 908 LKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPD----GLHNVQRIDIQRCPSLVSLA----ERGLPITISSV 979 (1175)
Q Consensus 908 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~----~~~~L~~L~l~~~~~L~~l~----~~~~~~~L~~L 979 (1175)
|++|++++|......|..+..+++|+.|++++|.....+|. .+++|+.|++++|. +..+. .....++|++|
T Consensus 303 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEE
T ss_pred CCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEE
Confidence 99999999976665566777889999999999987756654 46899999999874 44442 12234689999
Q ss_pred EEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCC--CCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEecc
Q 047556 980 RIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEE--GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEG 1057 (1175)
Q Consensus 980 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~ 1057 (1175)
++++|......|..+..+++|++|++++|......+.. ..+++|++|++++|... ...+..+..+++|+.|++++
T Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD---ISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB---TTCTTTTTTCTTCCEEECTT
T ss_pred ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC---CcCHHHHhCCCCCCEEECCC
Confidence 99999877777888999999999999999443333332 34689999999876554 33466788999999999999
Q ss_pred CCCccccccch-hhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCC--CCCCCCcceeeecc
Q 047556 1058 CDDDEAECFPD-EEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPE--VGLPSSILWLNIWS 1134 (1175)
Q Consensus 1058 c~~~~~~~~~~-~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~~sL~~L~i~~ 1134 (1175)
|.... ..++. .. +..+++|+.|++++ +.++.+++..+.++++|+.|++++| .+..++. ....++| .|++++
T Consensus 459 n~l~~-~~~~~~~~--~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 459 NHFPK-GNIQKTNS--LQTLGRLEILVLSF-CDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp CBCGG-GEECSSCG--GGGCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCS
T ss_pred CCCCc-cccccchh--hccCCCccEEECCC-CccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcC
Confidence 76321 11221 11 13568999999999 5788887788999999999999996 4554433 2335678 999999
Q ss_pred CchhHHhhccCCCCCCccccCcceEEECCeeee
Q 047556 1135 CPMLEKEYKRDTGKEWSKIATIPRVCIDGKFVG 1167 (1175)
Q Consensus 1135 cp~L~~~~~~~~g~~~~~i~~i~~~~i~~~~~~ 1167 (1175)
|..-.. .........++..+.+.++...
T Consensus 533 N~l~~~-----~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 533 NHISII-----LPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SCCCCC-----CGGGHHHHHTSSEEECTTCCEE
T ss_pred Cccccc-----CHhhcccCCCCCEEeCCCCCcc
Confidence 853210 0112344556777888877654
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2e-30 Score=315.18 Aligned_cols=457 Identities=19% Similarity=0.192 Sum_probs=267.2
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccCc-hhhhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 678 (1175)
++|++|+|++|.++.+++..|.++++|++|+|++|.+..+| ..|+++++|++|+|++| .+..+| ..++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 68899999999988887788889999999999999888775 57888999999999998 454554 4588899999999
Q ss_pred ecCccccc-cCCccCCCCCCccccCceeec-cCCCc-cCccccccccccccccccCCccCCCChhhcchhhhcccccccc
Q 047556 679 ITGAYLIK-EMPFGMKELKNLQALSNFIVG-TGTRS-SGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEA 755 (1175)
Q Consensus 679 l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~-~~~~~-~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 755 (1175)
+++|.+.. ..|..++++++|++|++..+. ....+ ..+..+++|+.|.. ......+. ....+..+++|+.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L-------~~n~l~~~-~~~~l~~l~~L~~ 176 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI-------KALSLRNY-QSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE-------EETTCCEE-CTTTTTTCSEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec-------cCCccccc-ChhhhhccccCce
Confidence 99888543 456778888888888887765 23222 23455555554431 11111110 1112333344444
Q ss_pred cccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCC---CCCCCCCCCCccEEEEeCCCCCCC----CCCC
Q 047556 756 LSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFP---SWIGDPSYSKMEVLILENCENCTY----LPST 828 (1175)
Q Consensus 756 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p---~~~~~~~l~~L~~L~L~~~~~~~~----lp~~ 828 (1175)
|.+.++... .... ..+..+++|+.|++++|....++ ..+.. .+++|+.|++++|.+.+. ++..
T Consensus 177 L~l~~n~~~------~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 177 LTLHLSESA------FLLE---IFADILSSVRYLELRDTNLARFQFSPLPVDE-VSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp EEEECSBST------THHH---HHHHSTTTBSEEEEESCBCTTCCCCCCSSCC-CCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred EecccCccc------ccch---hhHhhcccccEEEccCCccccccccccchhh-hhhcccceeccccccchhHHHHHHHH
Confidence 444332210 0000 00112344555555554443321 11111 234455555554443321 1111
Q ss_pred cCCCCCccEEeeccCcCcceeccccccccceEEEccCCcccc--ccccCCCCCccEEEEecCcCchhhhcCcc-ccCCCC
Q 047556 829 VLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTF--IARRKLPSSLKRLEIENCENLQHLVYGEE-DATSSS 905 (1175)
Q Consensus 829 ~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~L~~L~l~~~~~L~~l~~~~~-~~~~~~ 905 (1175)
...+++|+.+++++|..- .+. .+.. .......++++.|.+.++.--........ ......
T Consensus 247 ~~~~~~L~~l~l~~~~~~-~~~----------------~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~ 309 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLN-GLG----------------DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309 (549)
T ss_dssp GGGCTTCCEEEEESCEEE-CCS----------------CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred hhhhcccccccccccccc-ccc----------------cccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence 222244444444443210 000 0000 00011224566666665431111000000 000124
Q ss_pred CCcCeEEeecCCCCCcCCCCC-CCcCccceEEeecCCCCCccC------CCCCCCCEEeeCCCCCcccccc----CCCCC
Q 047556 906 VTLKRLGIRRCPELTSLSPGI-RLPEALEQLYIWDCQKLESIP------DGLHNVQRIDIQRCPSLVSLAE----RGLPI 974 (1175)
Q Consensus 906 ~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~p------~~~~~L~~L~l~~~~~L~~l~~----~~~~~ 974 (1175)
++|+.|++++|. +..+|..+ ..+++|+.|++++|...+.+| ..+++|+.|++++| .++.++. ....+
T Consensus 310 ~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCT
T ss_pred ccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCC
Confidence 578888888875 55666554 357788888888887665432 34678888888876 4554432 22335
Q ss_pred CccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCCCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeE
Q 047556 975 TISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLW 1054 (1175)
Q Consensus 975 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~ 1054 (1175)
+|++|++++| .++.+|..+..+++|++|++++| .++.+|.. .+++|++|++++|....+ +..+++|+.|+
T Consensus 388 ~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls~N~l~~~-------~~~l~~L~~L~ 457 (549)
T 2z81_A 388 NLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC-IPQTLEVLDVSNNNLDSF-------SLFLPRLQELY 457 (549)
T ss_dssp TCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT-SCTTCSEEECCSSCCSCC-------CCCCTTCCEEE
T ss_pred CCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccch-hcCCceEEECCCCChhhh-------cccCChhcEEE
Confidence 7888888877 55677777778888888888888 56666654 456788888877655443 24677888888
Q ss_pred eccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCC
Q 047556 1055 IEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCP 1113 (1175)
Q Consensus 1055 l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1113 (1175)
+++|. +..+|... .+++|+.|++++ |+++.+++..+..+++|+.|++++|+
T Consensus 458 Ls~N~---l~~ip~~~----~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 458 ISRNK---LKTLPDAS----LFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSSC---CSSCCCGG----GCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCc---cCcCCCcc----cCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCC
Confidence 88865 55666532 356777888877 57777776667777777777777765
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=313.39 Aligned_cols=499 Identities=15% Similarity=0.075 Sum_probs=319.2
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEeccc-ccccc-cccccCcccccEEeccCccccccCchhhhccCCCce
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHT-WIRNL-PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRH 676 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~-~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 676 (1175)
..++|++|+|++|.++.+++..|.++++|++|+|++| .+..+ |..|.+|++|++|+|++|......|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578999999999999998899999999999999999 45567 778999999999999999555556889999999999
Q ss_pred eeecCccccccCCcc--CCCCCCccccCceeeccCCCc--cCccccccccccccccccCCccCCCChhhcchhhhccccc
Q 047556 677 LDITGAYLIKEMPFG--MKELKNLQALSNFIVGTGTRS--SGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQN 752 (1175)
Q Consensus 677 L~l~~~~~~~~~p~~--~~~L~~L~~L~~~~~~~~~~~--~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 752 (1175)
|++++|.+.+.+|.. ++++++|++|++..+...... ..+.++++|+.|.. .+........ ..+..+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L-------s~N~i~~~~~-~~l~~l-- 171 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF-------SSNQIFLVCE-HELEPL-- 171 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE-------ESSCCCCCCS-GGGHHH--
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC-------CCCcCCeeCH-HHcccc--
Confidence 999999976666665 899999999998887655432 23555555555541 1111110000 001111
Q ss_pred ccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCC-CCCCCCCCCCC------CccEEEEeCCCCCCCC
Q 047556 753 LEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKR-FPSWIGDPSYS------KMEVLILENCENCTYL 825 (1175)
Q Consensus 753 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~------~L~~L~L~~~~~~~~l 825 (1175)
. .++|+.|++++|.... .|..+.. ++ .|+.|++++|.+.+..
T Consensus 172 ----------------------------~-~~~L~~L~L~~n~l~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~ 220 (844)
T 3j0a_A 172 ----------------------------Q-GKTLSFFSLAANSLYSRVSVDWGK--CMNPFRNMVLEILDVSGNGWTVDI 220 (844)
T ss_dssp ----------------------------H-HCSSCCCEECCSBSCCCCCCCCCS--SSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred ----------------------------c-CCccceEECCCCccccccccchhh--cCCccccCceeEEecCCCcCchhH
Confidence 0 0345555555543322 2222211 22 3667777766655544
Q ss_pred CCCcCC---CCCccEEeeccCc--------Ccceeccc-----cccccceEEEccCCccccccc-cCCCCCccEEEEecC
Q 047556 826 PSTVLW---SSSLKMLEIHNCK--------NLQHLVDE-----NNLQLESLRITSCDSLTFIAR-RKLPSSLKRLEIENC 888 (1175)
Q Consensus 826 p~~~~~---~~~L~~L~L~~~~--------~l~~l~~~-----~~~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~ 888 (1175)
|..+.. ...++.|.+..+. .+...... ....++.|+++++.-....+. ....++|+.|+++++
T Consensus 221 ~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300 (844)
T ss_dssp TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC
T ss_pred HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC
Confidence 433221 1445555554211 11111100 012356666655432211110 122356777777765
Q ss_pred cCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCC---CCCCCCEEeeCCCCCcc
Q 047556 889 ENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPD---GLHNVQRIDIQRCPSLV 965 (1175)
Q Consensus 889 ~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~---~~~~L~~L~l~~~~~L~ 965 (1175)
. +..+.. .....+++|+.|++++|......+..+..+++|+.|++++|......+. .+++|+.|++++| .++
T Consensus 301 ~-i~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~ 375 (844)
T 3j0a_A 301 K-INKIAD---EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALT 375 (844)
T ss_dssp C-CCEECT---TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSC
T ss_pred c-CCCCCh---HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCC
Confidence 4 222211 1223467888888888866555566777778888888888864333332 3577888888876 444
Q ss_pred ccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCC---CCCCCcceEEEeccCccchhhhhhh
Q 047556 966 SLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEE---GFPNNLVELKIRGVDVKMYKAAIQW 1042 (1175)
Q Consensus 966 ~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~~~~~~l~~~~~~ 1042 (1175)
.++. .++|+.|.+++|. +..+|.. ..+++.|++++| .+..++.. ..+++|+.|++++|....+... .
T Consensus 376 ~i~~---~~~L~~L~l~~N~-l~~l~~~---~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~ 445 (844)
T 3j0a_A 376 TIHF---IPSIPDIFLSGNK-LVTLPKI---NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCSGD--Q 445 (844)
T ss_dssp CCSS---CCSCSEEEEESCC-CCCCCCC---CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS--S
T ss_pred cccC---CCCcchhccCCCC-ccccccc---ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCcccccccc--c
Confidence 4432 4578888888774 4456543 567888888888 66665432 2467899999988876654321 1
Q ss_pred ccCCCCCCCeeEeccCCCccccccchhhh---hccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCC
Q 047556 1043 GLHRLTSLRRLWIEGCDDDEAECFPDEEM---RMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFP 1119 (1175)
Q Consensus 1043 ~l~~l~~L~~L~l~~c~~~~~~~~~~~~~---~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp 1119 (1175)
.+..+++|+.|++++|. +...+.... .+..+++|+.|+|++ |+++.+++..+.++++|+.|+|++ +.++.+|
T Consensus 446 ~~~~~~~L~~L~Ls~N~---l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~ 520 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENM---LQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNS-NRLTVLS 520 (844)
T ss_dssp SSCSCTTCCBCEEESCC---CSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEES-CCCSSCC
T ss_pred ccccCCccccccCCCCc---cccccccccchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCC-CCCCccC
Confidence 34567899999999976 332221110 013458999999999 689999988899999999999999 5789999
Q ss_pred CCCCCCCcceeeeccCchhHHhhccCCCCCCccccCcceEEECCeee
Q 047556 1120 EVGLPSSILWLNIWSCPMLEKEYKRDTGKEWSKIATIPRVCIDGKFV 1166 (1175)
Q Consensus 1120 ~~~~~~sL~~L~i~~cp~L~~~~~~~~g~~~~~i~~i~~~~i~~~~~ 1166 (1175)
...++++|+.|++++|..- +.....+..+..+.+.+|..
T Consensus 521 ~~~~~~~L~~L~Ls~N~l~--------~~~~~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 521 HNDLPANLEILDISRNQLL--------APNPDVFVSLSVLDITHNKF 559 (844)
T ss_dssp CCCCCSCCCEEEEEEECCC--------CCCSCCCSSCCEEEEEEECC
T ss_pred hhhhhccccEEECCCCcCC--------CCChhHhCCcCEEEecCCCc
Confidence 8778899999999998532 22222344667777777654
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=8.7e-30 Score=312.19 Aligned_cols=60 Identities=18% Similarity=0.076 Sum_probs=49.9
Q ss_pred CCCCCccEEEEeccCCCCCCC--CCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccC
Q 047556 781 KPCTNIKKLTINGYGGKRFPS--WIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNC 843 (1175)
Q Consensus 781 ~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~ 843 (1175)
..+++|+.|++++|....+|. .+.. +++|+.|++++|.+.+.+| .+..+++|+.|+++++
T Consensus 302 ~~l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 302 PVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp GGGGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred ccCCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 345789999999998888998 7775 8999999999999987888 6666688888888875
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.7e-29 Score=304.03 Aligned_cols=478 Identities=19% Similarity=0.193 Sum_probs=317.5
Q ss_pred CCCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchhhhccCCCceee
Q 047556 600 CRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLD 678 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 678 (1175)
|+...+.+++++.++.+|. .+. ++|++|+|++|.++.+ |..+.++++|++|+|++|......|..|+++++|++|+
T Consensus 4 C~~~~~c~~~~~~l~~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSEEECTTSCCSSCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCceEECCCCccccccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 3445567888999999994 443 7999999999999987 56899999999999999954444457899999999999
Q ss_pred ecCccccccCCccCCCCCCccccCceeeccCC--CccCccccccccccccccccCCccCCCChhhcchhhhccccccccc
Q 047556 679 ITGAYLIKEMPFGMKELKNLQALSNFIVGTGT--RSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEAL 756 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~--~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 756 (1175)
+++|.+.+..|..++++++|++|++..+.... .+..+..+++|+.|+. .+...........+.++++|+.|
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L-------~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI-------GNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE-------EESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC-------CCCccccccCHhhhhcccccCee
Confidence 99999554444459999999999998887653 2345667777776652 22211112222335556667777
Q ss_pred ccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCC---CCCcCCCC
Q 047556 757 SLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYL---PSTVLWSS 833 (1175)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l---p~~~~~~~ 833 (1175)
++..+.... .....+..+++|+.|+++++....+|.++.. .+++|+.|++++|.+.+.. ......++
T Consensus 154 ~L~~n~l~~---------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 154 EIKALSLRN---------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp EEEETTCCE---------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred eccCCcccc---------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhh
Confidence 766543311 1223455566777777776665555554421 3567777777777665421 11222346
Q ss_pred CccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCch--hhhcCccccCCCCCCcCeE
Q 047556 834 SLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQ--HLVYGEEDATSSSVTLKRL 911 (1175)
Q Consensus 834 ~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~--~l~~~~~~~~~~~~~L~~L 911 (1175)
+|+.|+++++. +....... +. ......++|+.+.+.+|..-. .+..........+++|+.|
T Consensus 224 ~L~~L~l~~n~-l~~~~~~~--------------l~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 286 (549)
T 2z81_A 224 PMKKLAFRGSV-LTDESFNE--------------LL--KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286 (549)
T ss_dssp CCCEEEEESCE-EEHHHHHH--------------HH--GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEE
T ss_pred cccceeccccc-cchhHHHH--------------HH--HHhhhhccccccccccccccccccccccchhhhhhhcccccc
Confidence 66666666542 11000000 00 000122466666666664211 1111111222347789999
Q ss_pred EeecCCCCCc-----CCCCCCCcCccceEEeecCCCCCccCC----CCCCCCEEeeCCCCCcccccc----CCCCCCccE
Q 047556 912 GIRRCPELTS-----LSPGIRLPEALEQLYIWDCQKLESIPD----GLHNVQRIDIQRCPSLVSLAE----RGLPITISS 978 (1175)
Q Consensus 912 ~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~l~~~p~----~~~~L~~L~l~~~~~L~~l~~----~~~~~~L~~ 978 (1175)
.+.++..-.. ++......++|+.|++++|. +..+|. .+++|+.|++++|.-...++. ....++|+.
T Consensus 287 ~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp EEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred cccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence 9988753221 11111234689999999987 556774 478999999999854433321 233468999
Q ss_pred EEEccCcccccCc---cccCCCCcccEEEeeCCCCCCCCCCC-CCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeE
Q 047556 979 VRIWSCEKLEALP---NDLHKLNSLEHLYLQRCPSIVRFPEE-GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLW 1054 (1175)
Q Consensus 979 L~l~~~~~l~~lp---~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~ 1054 (1175)
|++++|. ++.++ ..+..+++|++|++++| .++.+|.. ..+++|++|++++|....++..+ .++|+.|+
T Consensus 366 L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~------~~~L~~L~ 437 (549)
T 2z81_A 366 LVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI------PQTLEVLD 437 (549)
T ss_dssp EECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS------CTTCSEEE
T ss_pred EEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccchh------cCCceEEE
Confidence 9999984 44444 35889999999999999 77788764 35689999999988877655332 26899999
Q ss_pred eccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCC--CCCCCcceeee
Q 047556 1055 IEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEV--GLPSSILWLNI 1132 (1175)
Q Consensus 1055 l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i 1132 (1175)
+++|. +..++ ..+++|++|++++ |+++.+|. ...+++|+.|+|++| .++.++.. ...++|+.|++
T Consensus 438 Ls~N~---l~~~~------~~l~~L~~L~Ls~-N~l~~ip~--~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 438 VSNNN---LDSFS------LFLPRLQELYISR-NKLKTLPD--ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp CCSSC---CSCCC------CCCTTCCEEECCS-SCCSSCCC--GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred CCCCC---hhhhc------ccCChhcEEECCC-CccCcCCC--cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEe
Confidence 99986 44454 2457999999999 68999983 467999999999995 67777653 34679999999
Q ss_pred ccCc
Q 047556 1133 WSCP 1136 (1175)
Q Consensus 1133 ~~cp 1136 (1175)
++||
T Consensus 505 ~~N~ 508 (549)
T 2z81_A 505 HTNP 508 (549)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8876
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.4e-29 Score=307.95 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=47.8
Q ss_pred cCCCCCCccEEEEeccCCCCCCC--CCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCc
Q 047556 779 MLKPCTNIKKLTINGYGGKRFPS--WIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCK 844 (1175)
Q Consensus 779 ~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~ 844 (1175)
.+..+++|+.|++++|....+|. .+.. +++|+.|++++|.+. .+| .+..+++|+.|+++++.
T Consensus 543 ~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 543 DEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp CTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC
T ss_pred cccccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc
Confidence 34556788888888888888888 6765 888999999888876 777 55666888888887743
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=301.28 Aligned_cols=126 Identities=24% Similarity=0.285 Sum_probs=81.1
Q ss_pred HhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccCch-hhhccC
Q 047556 595 NLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLPS-KMRKLI 672 (1175)
Q Consensus 595 ~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~ 672 (1175)
..|..+++|++|+|++|.++.+++..|.++++|++|+|++|.++.+| ..|+++++|++|++++| .+..+|. .+++++
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK 124 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccccc
Confidence 34666777777777777777776666777777777777777776664 45777777777777777 4555544 467777
Q ss_pred CCceeeecCccccc-cCCccCCCCCCccccCceeeccCCC-ccCccccccc
Q 047556 673 NLRHLDITGAYLIK-EMPFGMKELKNLQALSNFIVGTGTR-SSGLKDLKSL 721 (1175)
Q Consensus 673 ~L~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~-~~~l~~l~~L 721 (1175)
+|++|++++|.+.. .+|..++++++|++|++..+..... +..+..+.+|
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 77777777776433 3566677777777776665544332 2234444444
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5.4e-29 Score=308.61 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=101.6
Q ss_pred cccccccccccCcccccEEeccCccccc-----------------cCchhhh--ccCCCceeeecCccccccCCccCCCC
Q 047556 635 TWIRNLPKSTCSLINLQILLLRGCYYLL-----------------KLPSKMR--KLINLRHLDITGAYLIKEMPFGMKEL 695 (1175)
Q Consensus 635 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~-----------------~lp~~i~--~L~~L~~L~l~~~~~~~~~p~~~~~L 695 (1175)
|.++.+|.++++|++|++|+|++|...+ .+|..++ ++++|++|+|++|.+.+.+|..+++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4555567677777777777777763323 1666665 77777777777776666667667777
Q ss_pred CCccccCceeec-cCC--CccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhH
Q 047556 696 KNLQALSNFIVG-TGT--RSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDK 772 (1175)
Q Consensus 696 ~~L~~L~~~~~~-~~~--~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 772 (1175)
++|+.|++..+. ... .|..+..+. ..+..+++|+.|.++.+....
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~-------------------------~~~~~l~~L~~L~Ls~N~L~~------- 562 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLA-------------------------DDEDTGPKIQIFYMGYNNLEE------- 562 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHH-------------------------HCTTTTTTCCEEECCSSCCCB-------
T ss_pred CCCCEEECcCCCCcccccchHHHHhhh-------------------------hcccccCCccEEEeeCCcCCc-------
Confidence 777776665553 221 222222221 001222345555554433211
Q ss_pred HHHHHh--cCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCC-ccEEeeccCc
Q 047556 773 EELVLG--MLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSS-LKMLEIHNCK 844 (1175)
Q Consensus 773 ~~~~~~--~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~-L~~L~L~~~~ 844 (1175)
.+. .+..+++|+.|++++|....+| .+.. +++|+.|++++|.+. .+|..+..+++ |+.|+|+++.
T Consensus 563 ---ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~--L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 563 ---FPASASLQKMVKLGLLDCVHNKVRHLE-AFGT--NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ---CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCT--TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred ---cCChhhhhcCCCCCEEECCCCCcccch-hhcC--CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 111 3455677888888887777777 4543 778888888888776 66666666676 8888777753
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=294.26 Aligned_cols=430 Identities=17% Similarity=0.154 Sum_probs=262.5
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
++|++|+|++|.++.+++..|.++++|++|+|++|.++.+ |..|+++++|++|+|++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 4555555555555555544555555555555555555544 445555555555555555 44455544 5555555555
Q ss_pred cCccccc-cCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccc
Q 047556 680 TGAYLIK-EMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSL 758 (1175)
Q Consensus 680 ~~~~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 758 (1175)
++|.+.+ .+|..++++++|+.|++..+....
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~------------------------------------------------ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK------------------------------------------------ 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG------------------------------------------------
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch------------------------------------------------
Confidence 5555332 244455555555555443321100
Q ss_pred ccccccCCCCchhHHHHHHhcCCCCCCc--cEEEEeccCC---CCCCCCCCCCCCC-CccEEEEeCCCCCCCCCC-CcCC
Q 047556 759 QWGSQFDISRNEDKEELVLGMLKPCTNI--KKLTINGYGG---KRFPSWIGDPSYS-KMEVLILENCENCTYLPS-TVLW 831 (1175)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~l~-~L~~L~L~~~~~~~~lp~-~~~~ 831 (1175)
..+..+++| +.|++++|.. ...|.++.. +. +...+.+++|.+.+.++. .+..
T Consensus 130 -------------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~ 188 (520)
T 2z7x_B 130 -------------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKT 188 (520)
T ss_dssp -------------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTT
T ss_pred -------------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhc
Confidence 011123344 8999998865 344555543 32 344567777877765554 4455
Q ss_pred CCCccEEeeccCcCcceeccccccccceEEEccCCccc-cccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCe
Q 047556 832 SSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLT-FIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKR 910 (1175)
Q Consensus 832 ~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~ 910 (1175)
+++|+.|+++++....... .+. .++...-.++|+.|.+.++.--.....+.... ...++|++
T Consensus 189 l~~L~~L~l~~n~~~~~~~----------------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~-~~~~~L~~ 251 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCS----------------YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL-VWHTTVWY 251 (520)
T ss_dssp CSEEEECCEEECCSTTTTH----------------HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH-HHTSSCSE
T ss_pred ccceeeccccccccccccc----------------eeecchhhhccccchhhccccccccCHHHHHHHHHH-hhhCcccE
Confidence 6888888888753100000 000 00001112456666665543111100000000 01347888
Q ss_pred EEeecCCCCCcCCCCC-----CCcCccceEEeecCCCCCccCC-CC------CCCCEEeeCCCCCccccccCCCCCCccE
Q 047556 911 LGIRRCPELTSLSPGI-----RLPEALEQLYIWDCQKLESIPD-GL------HNVQRIDIQRCPSLVSLAERGLPITISS 978 (1175)
Q Consensus 911 L~l~~~~~l~~~~~~~-----~~~~~L~~L~l~~~~~l~~~p~-~~------~~L~~L~l~~~~~L~~l~~~~~~~~L~~ 978 (1175)
|++++|.....+|..+ ..+++|+.+++++|.. .+|. .+ .+|+.|++++|. +...+.....++|++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 328 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLH 328 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccchhhCCcccE
Confidence 8888886555677766 6778888888888875 5552 11 468888888874 444433234568899
Q ss_pred EEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCC----CCCCCCcceEEEeccCccc-hhhhhhhccCCCCCCCee
Q 047556 979 VRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPE----EGFPNNLVELKIRGVDVKM-YKAAIQWGLHRLTSLRRL 1053 (1175)
Q Consensus 979 L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~L~~L~l~~~~~~~-l~~~~~~~l~~l~~L~~L 1053 (1175)
|++++|.....+|..+..+++|++|++++| .++.++. ...+++|++|++++|.... ++ +..+..+++|+.|
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~---~~~~~~l~~L~~L 404 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK---KGDCSWTKSLLSL 404 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG---GCSCCCCTTCCEE
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccc---cchhccCccCCEE
Confidence 999988776678888899999999999999 5664332 2356899999998777654 33 2247788999999
Q ss_pred EeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCC--CCCCCcceee
Q 047556 1054 WIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEV--GLPSSILWLN 1131 (1175)
Q Consensus 1054 ~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~ 1131 (1175)
++++|... ..+|. .++++|+.|++++ |+++.+|. .+..+++|+.|++++| .++.+|.. ...++|++|+
T Consensus 405 ~Ls~N~l~--~~~~~-----~l~~~L~~L~Ls~-N~l~~ip~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 405 NMSSNILT--DTIFR-----CLPPRIKVLDLHS-NKIKSIPK-QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp ECCSSCCC--GGGGG-----SCCTTCCEEECCS-SCCCCCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred ECcCCCCC--cchhh-----hhcccCCEEECCC-Ccccccch-hhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 99997632 22332 2457999999999 58889984 4559999999999995 68888874 3357899999
Q ss_pred eccCc
Q 047556 1132 IWSCP 1136 (1175)
Q Consensus 1132 i~~cp 1136 (1175)
+++||
T Consensus 475 l~~N~ 479 (520)
T 2z7x_B 475 LHTNP 479 (520)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 99876
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=297.52 Aligned_cols=470 Identities=19% Similarity=0.167 Sum_probs=322.7
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccC-chhhhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKL-PSKMRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 678 (1175)
+++++|+|++|.++.+++..|.++++|++|+|++|.+..+| ..|.++++|++|+|++|. +..+ |..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccc
Confidence 57999999999999998889999999999999999999885 569999999999999994 5555 57899999999999
Q ss_pred ecCccccccCCc-cCCCCCCccccCceeeccCC--CccCccccccccccccccccCCccCCCChhhcchhhhcccccccc
Q 047556 679 ITGAYLIKEMPF-GMKELKNLQALSNFIVGTGT--RSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEA 755 (1175)
Q Consensus 679 l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~--~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 755 (1175)
+++|. +..+|. .++++++|++|++..+.... .+..+..+++|+.|+
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~------------------------------ 155 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD------------------------------ 155 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE------------------------------
T ss_pred ccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe------------------------------
Confidence 99998 555554 68999999999888775543 344455555555443
Q ss_pred cccccccccCCCCchhHHHHHHhcCCCCCCc----cEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCC-CCCCCcC
Q 047556 756 LSLQWGSQFDISRNEDKEELVLGMLKPCTNI----KKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCT-YLPSTVL 830 (1175)
Q Consensus 756 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~ 830 (1175)
++.+...... ...+..+++| ..|+++++....++...+. ..+|+.|++++|.... .++..+.
T Consensus 156 --l~~n~l~~~~---------~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~ 222 (570)
T 2z63_A 156 --LSSNKIQSIY---------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQ 222 (570)
T ss_dssp --CTTSCCCEEC---------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHH
T ss_pred --CcCCccceec---------HHHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhc
Confidence 3322110000 0111222344 6889998887777655543 3479999999875321 2233333
Q ss_pred CCCCccEEeec-----cCcCcceeccccc-----cccceEEEccCCcccccccc--CCCCCccEEEEecCcCchhhhcCc
Q 047556 831 WSSSLKMLEIH-----NCKNLQHLVDENN-----LQLESLRITSCDSLTFIARR--KLPSSLKRLEIENCENLQHLVYGE 898 (1175)
Q Consensus 831 ~~~~L~~L~L~-----~~~~l~~l~~~~~-----~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~L~~l~~~~ 898 (1175)
.++.++.+.+. +...++.+..... ..++.+.+.+++.+...... .-.++|+.|.++++. ++.++..
T Consensus 223 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~- 300 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDF- 300 (570)
T ss_dssp TTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBC-
T ss_pred CccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhh-
Confidence 33555544332 1122222322211 12556666665433322111 112678888888764 3333321
Q ss_pred cccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccC-CCCCCCCEEeeCCCCCccccc----cCCCC
Q 047556 899 EDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIP-DGLHNVQRIDIQRCPSLVSLA----ERGLP 973 (1175)
Q Consensus 899 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p-~~~~~L~~L~l~~~~~L~~l~----~~~~~ 973 (1175)
...+ +|++|++++|... .+|. ..+++|+.|++++|......+ ..+++|+.|++++|. +.... .....
T Consensus 301 ---~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 301 ---SYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGT 372 (570)
T ss_dssp ---CSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTC
T ss_pred ---hccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCc-cCcccccccccccc
Confidence 2234 8999999998644 5665 367889999999998766555 467899999998874 43331 11223
Q ss_pred CCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCC---CCCCCCcceEEEeccCccchhhhhhhccCCCCCC
Q 047556 974 ITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPE---EGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSL 1050 (1175)
Q Consensus 974 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~---~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L 1050 (1175)
++|++|++++|. +..+|..+..+++|++|++++| .+...+. ...+++|++|++++|.... ..+..|.++++|
T Consensus 373 ~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L 447 (570)
T 2z63_A 373 TSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV---AFNGIFNGLSSL 447 (570)
T ss_dssp SCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEE---CCTTTTTTCTTC
T ss_pred CccCEEECCCCc-cccccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccc---cchhhhhcCCcC
Confidence 689999999885 4455556899999999999999 4544432 2346899999998765443 345678899999
Q ss_pred CeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCC--CCCCCcc
Q 047556 1051 RRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEV--GLPSSIL 1128 (1175)
Q Consensus 1051 ~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~ 1128 (1175)
+.|++++|... ...+|... ..+++|+.|++++ +.++.+++..+.++++|+.|+|++| .++.+|.. ...++|+
T Consensus 448 ~~L~l~~n~l~-~~~~p~~~---~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 448 EVLKMAGNSFQ-ENFLPDIF---TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp CEEECTTCEEG-GGEECSCC---TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred cEEECcCCcCc-cccchhhh---hcccCCCEEECCC-CccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCc
Confidence 99999997622 12455332 4568999999999 5788886688999999999999995 67777653 3357999
Q ss_pred eeeeccCc
Q 047556 1129 WLNIWSCP 1136 (1175)
Q Consensus 1129 ~L~i~~cp 1136 (1175)
.|++++||
T Consensus 522 ~L~l~~N~ 529 (570)
T 2z63_A 522 KIWLHTNP 529 (570)
T ss_dssp EEECCSSC
T ss_pred EEEecCCc
Confidence 99999865
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=6.7e-29 Score=304.33 Aligned_cols=356 Identities=15% Similarity=0.124 Sum_probs=230.0
Q ss_pred HHHhhhcCCCccEEEeccccccc------------------CCCCccC--CcccccEEEecccccc-cccccccCccccc
Q 047556 593 FSNLLSKCRKLRVLSLSRSYITE------------------LPKGSMS--GWKHLRYLNLSHTWIR-NLPKSTCSLINLQ 651 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~~i~~------------------l~~~~~~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~ 651 (1175)
+|..|.++++|++|+|++|.+++ +| ..++ ++++|++|+|++|.+. .+|..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 45567788888888888888887 66 6777 8888888888888755 6788888888888
Q ss_pred EEeccCccccc--cCchhhhcc------CCCceeeecCccccccCCc--cCCCCCCccccCceeeccC-CCccCcccccc
Q 047556 652 ILLLRGCYYLL--KLPSKMRKL------INLRHLDITGAYLIKEMPF--GMKELKNLQALSNFIVGTG-TRSSGLKDLKS 720 (1175)
Q Consensus 652 ~L~L~~~~~l~--~lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~~~~L~~L~~L~~~~~~~~-~~~~~l~~l~~ 720 (1175)
+|+|++|..+. .+|..++++ ++|++|++++|.+. .+|. .++++++|+.|++..+... ..+ .+..+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 88888885243 578777776 78888888888744 7777 7888888888877666544 333 4444444
Q ss_pred ccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHHHHHhcCCCCCC-ccEEEEeccCCCCC
Q 047556 721 LTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTN-IKKLTINGYGGKRF 799 (1175)
Q Consensus 721 L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~ 799 (1175)
|+ .|.++.+... ..+..+..+++ |+.|++++|....+
T Consensus 355 L~--------------------------------~L~L~~N~l~----------~lp~~l~~l~~~L~~L~Ls~N~l~~l 392 (636)
T 4eco_A 355 LA--------------------------------SLNLAYNQIT----------EIPANFCGFTEQVENLSFAHNKLKYI 392 (636)
T ss_dssp ES--------------------------------EEECCSSEEE----------ECCTTSEEECTTCCEEECCSSCCSSC
T ss_pred CC--------------------------------EEECCCCccc----------cccHhhhhhcccCcEEEccCCcCccc
Confidence 44 4444332210 11223455677 89999999888888
Q ss_pred CCCCCCCCCCCccEEEEeCCCCCCCCCCCcC-------CCCCccEEeeccCcCcceeccccccccceEEEccCCcccccc
Q 047556 800 PSWIGDPSYSKMEVLILENCENCTYLPSTVL-------WSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIA 872 (1175)
Q Consensus 800 p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-------~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~ 872 (1175)
|.++....+++|+.|++++|.+.+..|..+. .+++|+.|+++++. +..++....
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~------------------ 453 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELF------------------ 453 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHH------------------
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHH------------------
Confidence 8887654456899999999998887777665 45678888887743 223322110
Q ss_pred ccCCCCCccEEEEecCcCchhhhcCcccc----CCCCCCcCeEEeecCCCCCcCCCCCC--CcCccceEEeecCCCCCcc
Q 047556 873 RRKLPSSLKRLEIENCENLQHLVYGEEDA----TSSSVTLKRLGIRRCPELTSLSPGIR--LPEALEQLYIWDCQKLESI 946 (1175)
Q Consensus 873 ~~~~~~~L~~L~l~~~~~L~~l~~~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~l~~~~~l~~~ 946 (1175)
...++|+.|+++++. ++.++...... ...+++|+.|++++|.. ..+|..+. .+++|+.|++++|.... +
T Consensus 454 --~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~l~~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 454 --STGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-F 528 (636)
T ss_dssp --HTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCC-CBCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred --ccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcC-CccChhhhhccCCCcCEEECCCCCCCC-c
Confidence 011344444444432 22222211110 01123677777777743 36666654 66777777777776544 5
Q ss_pred CCC---CCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCCCCCCc
Q 047556 947 PDG---LHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNL 1023 (1175)
Q Consensus 947 p~~---~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L 1023 (1175)
|.. +++|+.|+++++. ++++|.....+|..+..+++|++|++++| .++.+|.. +.++|
T Consensus 529 p~~~~~l~~L~~L~Ls~N~-----------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L 589 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQR-----------------DAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNI 589 (636)
T ss_dssp CCGGGGCSSCCEEECCSCB-----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTC
T ss_pred ChhhhcCCCCCEEECCCCc-----------------ccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcC
Confidence 543 3445555554432 11344456678888999999999999999 56888875 44788
Q ss_pred ceEEEeccCccch
Q 047556 1024 VELKIRGVDVKMY 1036 (1175)
Q Consensus 1024 ~~L~l~~~~~~~l 1036 (1175)
+.|++++|....+
T Consensus 590 ~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 590 SVLDIKDNPNISI 602 (636)
T ss_dssp CEEECCSCTTCEE
T ss_pred CEEECcCCCCccc
Confidence 8888877755443
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.9e-27 Score=280.65 Aligned_cols=432 Identities=15% Similarity=0.133 Sum_probs=280.6
Q ss_pred cceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccc
Q 047556 561 QHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL 640 (1175)
Q Consensus 561 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l 640 (1175)
++++.|.+.++.. ....+..|..+++|++|+|++|.++.+++..|+++++|++|+|++|.++.+
T Consensus 21 ~~L~~L~Ls~n~i----------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 84 (520)
T 2z7x_B 21 QKTTILNISQNYI----------------SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84 (520)
T ss_dssp TTCSEEECCSSCC----------------CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE
T ss_pred ccccEEECCCCcc----------------cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec
Confidence 7788887766542 223456789999999999999999999778999999999999999999999
Q ss_pred cccccCcccccEEeccCccccc-cCchhhhccCCCceeeecCccccccCCccCCCCCCc--cccCceeecc--CC-CccC
Q 047556 641 PKSTCSLINLQILLLRGCYYLL-KLPSKMRKLINLRHLDITGAYLIKEMPFGMKELKNL--QALSNFIVGT--GT-RSSG 714 (1175)
Q Consensus 641 p~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L--~~L~~~~~~~--~~-~~~~ 714 (1175)
|.. .+++|++|+|++|.... .+|..++++++|++|++++|.+.. ..+..+++| +.|++..+.. .. .+
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~-- 157 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDP-- 157 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCT--
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccc--
Confidence 988 89999999999995443 468899999999999999998543 346666666 7776555432 00 00
Q ss_pred ccccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHHHHHhcCCCCC-CccEEEEec
Q 047556 715 LKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCT-NIKKLTING 793 (1175)
Q Consensus 715 l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~ 793 (1175)
..+..+. ....+++.+
T Consensus 158 ---------------------------------------------------------------~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 158 ---------------------------------------------------------------EGLQDFNTESLHIVFPT 174 (520)
T ss_dssp ---------------------------------------------------------------TTTTTCCEEEEEEECCS
T ss_pred ---------------------------------------------------------------ccccccccceEEEEecc
Confidence 0011111 122344555
Q ss_pred cCCC-CCCCCCCCCCCCCccEEEEeCCC-------CCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccC
Q 047556 794 YGGK-RFPSWIGDPSYSKMEVLILENCE-------NCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC 865 (1175)
Q Consensus 794 ~~~~-~~p~~~~~~~l~~L~~L~L~~~~-------~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c 865 (1175)
+... .++.... ..+++|+.|++++|. +.+.+| .+..+++|+.|+++++.--.... .
T Consensus 175 n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~-~------------- 238 (520)
T 2z7x_B 175 NKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSF-I------------- 238 (520)
T ss_dssp SSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHH-H-------------
T ss_pred Ccchhhhhhhhh-hcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHH-H-------------
Confidence 4432 2333222 258899999999986 334444 34445889999887743110000 0
Q ss_pred CccccccccCCCCCccEEEEecCcCchhhhcCcccc-CCCCCCcCeEEeecCCCCCcCCC-CCCCc---CccceEEeecC
Q 047556 866 DSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDA-TSSSVTLKRLGIRRCPELTSLSP-GIRLP---EALEQLYIWDC 940 (1175)
Q Consensus 866 ~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~-~~~~~---~~L~~L~l~~~ 940 (1175)
.+......++|+.|.++++.--..++...... .+.+++|+.+++.+|.. .+|. .+... .+|+.|++++|
T Consensus 239 ----~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 239 ----RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp ----HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred ----HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 00000001244445554443111222111000 02355666666666654 3331 11111 35777777776
Q ss_pred CCCCcc-CCCCCCCCEEeeCCCCCcccccc-CCCCCCccEEEEccCcccc--cCccccCCCCcccEEEeeCCCCCCC-CC
Q 047556 941 QKLESI-PDGLHNVQRIDIQRCPSLVSLAE-RGLPITISSVRIWSCEKLE--ALPNDLHKLNSLEHLYLQRCPSIVR-FP 1015 (1175)
Q Consensus 941 ~~l~~~-p~~~~~L~~L~l~~~~~L~~l~~-~~~~~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~-lp 1015 (1175)
...... +..+++|+.|++++|.--..++. ....++|++|++++|.... .+|..+..+++|++|++++| .+.. +|
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~ 391 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEK 391 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGG
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccc
Confidence 643322 25566777777776632221221 1223578888888775443 56677899999999999999 4554 77
Q ss_pred CC--CCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCccc
Q 047556 1016 EE--GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKL 1093 (1175)
Q Consensus 1016 ~~--~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l 1093 (1175)
.. ..+++|++|++++|... +..|..+. ++|+.|++++|. +..+|...+ .+++|++|++++ |.++.+
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~---~~~~~~l~--~~L~~L~Ls~N~---l~~ip~~~~---~l~~L~~L~L~~-N~l~~l 459 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILT---DTIFRCLP--PRIKVLDLHSNK---IKSIPKQVV---KLEALQELNVAS-NQLKSV 459 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCC---GGGGGSCC--TTCCEEECCSSC---CCCCCGGGG---GCTTCCEEECCS-SCCCCC
T ss_pred cchhccCccCCEEECcCCCCC---cchhhhhc--ccCCEEECCCCc---ccccchhhh---cCCCCCEEECCC-CcCCcc
Confidence 54 34689999999877654 33343332 799999999986 668887664 568999999999 689999
Q ss_pred CcCCCCCCCCCCceeccCCC
Q 047556 1094 SSKGFQSLTSLEFLWIDDCP 1113 (1175)
Q Consensus 1094 ~~~~l~~l~~L~~L~l~~c~ 1113 (1175)
|...+.++++|+.|++++|+
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhccCCcccEEECcCCC
Confidence 96668999999999999965
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.1e-25 Score=279.48 Aligned_cols=493 Identities=18% Similarity=0.093 Sum_probs=272.7
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCch-hhhccCCCceeee
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPS-KMRKLINLRHLDI 679 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l 679 (1175)
++++|||++|.|+.+++.+|.++++|++|+|++|.|+.+|+ +|.+|++|++|+|++| .+..+|. .|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEEC
Confidence 57777777777777776677777777777777777777744 4677777777777777 4555553 4677777777777
Q ss_pred cCccccccCCc-cCCCCCCccccCceeeccCC--CccCccccccccccccccccCCccCCCChhhcchhhhccccccc--
Q 047556 680 TGAYLIKEMPF-GMKELKNLQALSNFIVGTGT--RSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLE-- 754 (1175)
Q Consensus 680 ~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~--~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~-- 754 (1175)
++|. +..+|. .|++|++|+.|++..+.... .+..+..+++|+.|. +......... ...+..+.+++
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~-------L~~N~l~~~~-~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD-------LSSNKIQSIY-CTDLRVLHQMPLL 202 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE-------CCSSCCCEEC-GGGGHHHHTCTTC
T ss_pred CCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc-------ccCccccccc-cccccchhhhhhh
Confidence 7776 334443 46777777777766665433 233344555555543 1111111100 00111111111
Q ss_pred --ccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCC--CCCCCCCCCCCCccEEEEeCCCCC--CC----
Q 047556 755 --ALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKR--FPSWIGDPSYSKMEVLILENCENC--TY---- 824 (1175)
Q Consensus 755 --~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~L~~~~~~--~~---- 824 (1175)
.+.+..+.... ..........+..+.+.++.... .+..+. .+..++...+..+... ..
T Consensus 203 ~~~~~ls~n~l~~----------i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~--~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 203 NLSLDLSLNPMNF----------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ--GLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp CCEEECTTCCCCE----------ECTTTTTTCEEEEEEEESCCSSHHHHHHHHH--TTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhcccCcccc----------cCcccccchhhhhhhhhcccccccccchhhc--CCcccccccccccccccccccccc
Confidence 11111111000 00001111223344443332110 000111 1233333332211110 00
Q ss_pred CCCCcCCCCCccEEeeccCcCc---ceecc--ccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCcc
Q 047556 825 LPSTVLWSSSLKMLEIHNCKNL---QHLVD--ENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEE 899 (1175)
Q Consensus 825 lp~~~~~~~~L~~L~L~~~~~l---~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~ 899 (1175)
.+..+.....+....+.....- ..+.. .....+..+.+.++... .+.......+++.|.+.++.. ..+.
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~-~~~~---- 344 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKF-GQFP---- 344 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGGGSCCCCSEEEEESCEE-SSCC----
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-cccccccchhhhhhhcccccc-cCcC----
Confidence 1111111122222222211100 00000 01122444444433221 111222335677777766531 1111
Q ss_pred ccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCc--cC---CCCCCCCEEeeCCCCCccccccCCCCC
Q 047556 900 DATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLES--IP---DGLHNVQRIDIQRCPSLVSLAERGLPI 974 (1175)
Q Consensus 900 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~--~p---~~~~~L~~L~l~~~~~L~~l~~~~~~~ 974 (1175)
...++.|+.+.+..+..... + ....+++|+.|++++|..... .+ ....+|+.+++..+......+......
T Consensus 345 --~~~l~~L~~l~l~~n~~~~~-~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~ 420 (635)
T 4g8a_A 345 --TLKLKSLKRLTFTSNKGGNA-F-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLE 420 (635)
T ss_dssp --CCBCTTCCEEEEESCCSCCB-C-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCT
T ss_pred --cccchhhhhcccccccCCCC-c-ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccc
Confidence 11356788888887754332 2 223567889999888865322 12 134678888877664333222223346
Q ss_pred CccEEEEccCcccccCc-cccCCCCcccEEEeeCCCCCCCCCCC--CCCCCcceEEEeccCccchhhhhhhccCCCCCCC
Q 047556 975 TISSVRIWSCEKLEALP-NDLHKLNSLEHLYLQRCPSIVRFPEE--GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLR 1051 (1175)
Q Consensus 975 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~ 1051 (1175)
+++.+++..+......+ ..+..+++|+.+++++| .+..++.. ..+++|+.|++++|.. .....|..|..+++|+
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~--~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSF--QENFLPDIFTELRNLT 497 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEE--GGGEECSCCTTCTTCC
T ss_pred cccchhhhhcccccccccccccccccccccccccc-ccccccccccccchhhhhhhhhhccc--ccccCchhhhhccccC
Confidence 78888888887666554 45788999999999999 55544433 3457899999985542 3334467789999999
Q ss_pred eeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCC---CCCCCcc
Q 047556 1052 RLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEV---GLPSSIL 1128 (1175)
Q Consensus 1052 ~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~~sL~ 1128 (1175)
.|++++|. +..+++..| ..+++|+.|+|++ |+++.+++..+.++++|+.|+|++ +.++.++.. .++++|+
T Consensus 498 ~L~Ls~N~---L~~l~~~~f--~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 498 FLDLSQCQ---LEQLSPTAF--NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp EEECTTSC---CCEECTTTT--TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCC
T ss_pred EEECCCCc---cCCcChHHH--cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCC
Confidence 99999986 666766554 4568999999999 689999888899999999999999 567777653 3467999
Q ss_pred eeeeccCc
Q 047556 1129 WLNIWSCP 1136 (1175)
Q Consensus 1129 ~L~i~~cp 1136 (1175)
+|+++++|
T Consensus 571 ~L~L~~Np 578 (635)
T 4g8a_A 571 FLNLTQND 578 (635)
T ss_dssp EEECTTCC
T ss_pred EEEeeCCC
Confidence 99998755
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=9.7e-26 Score=273.68 Aligned_cols=445 Identities=14% Similarity=0.099 Sum_probs=249.8
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccCchhhhccCCCceeeec
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDIT 680 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 680 (1175)
..+++++++|.++.+|. .+. ++|++|+|++|.|..+| ..|.++++|++|+|++|......|..|+++++|++|+++
T Consensus 32 ~~~~l~ls~~~L~~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCSCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCccCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 33666666666666662 222 56666666666666554 356666666666666663222235556666666666666
Q ss_pred CccccccCCccCCCCCCccccCceeeccCCCc--cCccccccccccccccccCCccCCCChhhcchhhhccccccccccc
Q 047556 681 GAYLIKEMPFGMKELKNLQALSNFIVGTGTRS--SGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSL 758 (1175)
Q Consensus 681 ~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~--~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 758 (1175)
+|. +..+|.. .+++|++|++..+.....+ ..+..+++| +.|++
T Consensus 109 ~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L--------------------------------~~L~L 153 (562)
T 3a79_B 109 HNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL--------------------------------TFLGL 153 (562)
T ss_dssp TSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC--------------------------------CEEEE
T ss_pred CCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcc--------------------------------cEEec
Confidence 666 3455544 5666666655544333211 122222222 22222
Q ss_pred ccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCC--C-CCCCCCCCCCCC-CccEEEEeCCCCCCCCCC-CcCCCC
Q 047556 759 QWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGG--K-RFPSWIGDPSYS-KMEVLILENCENCTYLPS-TVLWSS 833 (1175)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~l~-~L~~L~L~~~~~~~~lp~-~~~~~~ 833 (1175)
+.+.... .....+..+ +|+.|++++|.. . ..|.++.. +. ..-.+++++|.+.+.++. .+..++
T Consensus 154 ~~n~l~~---------~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~l~ 221 (562)
T 3a79_B 154 SAAKFRQ---------LDLLPVAHL-HLSCILLDLVSYHIKGGETESLQI--PNTTVLHLVFHPNSLFSVQVNMSVNALG 221 (562)
T ss_dssp ECSBCCT---------TTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEE--CCEEEEEEEECSSSCCCCCCEEEESSEE
T ss_pred CCCcccc---------Cchhhhhhc-eeeEEEeecccccccccCcccccc--cCcceEEEEecCccchhhhhhhcccccc
Confidence 2211100 001111222 347888887765 2 23333332 11 112456666666554443 223346
Q ss_pred CccEEeeccCcCcceeccccccccceEEEccCCcccc-ccccCCCCCccEEEEecCcC----chhhhcCccccCCCCCCc
Q 047556 834 SLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTF-IARRKLPSSLKRLEIENCEN----LQHLVYGEEDATSSSVTL 908 (1175)
Q Consensus 834 ~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~L~~L~l~~~~~----L~~l~~~~~~~~~~~~~L 908 (1175)
+|+.|++++.... |..+.. ++...-.++|+.+.+.++.- +..++. ....++|
T Consensus 222 ~L~~L~l~~n~~~------------------~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-----~~~~~~L 278 (562)
T 3a79_B 222 HLQLSNIKLNDEN------------------CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-----FFWPRPV 278 (562)
T ss_dssp EEEEEEEECCSTT------------------HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-----HHTTSSE
T ss_pred eEEEecccccccc------------------cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-----hhhcccc
Confidence 6666666653200 000000 00001113444555444321 111110 0013467
Q ss_pred CeEEeecCCCCCcCCCCC-----CCcCccceEEeecCCCCCccCCC-------CCCCCEEeeCCCCCccccccCCCCCCc
Q 047556 909 KRLGIRRCPELTSLSPGI-----RLPEALEQLYIWDCQKLESIPDG-------LHNVQRIDIQRCPSLVSLAERGLPITI 976 (1175)
Q Consensus 909 ~~L~l~~~~~l~~~~~~~-----~~~~~L~~L~l~~~~~l~~~p~~-------~~~L~~L~l~~~~~L~~l~~~~~~~~L 976 (1175)
++|++++|.....+|..+ ..++.|+.+++..+.. .+|.. -.+|+.|+++++. +..++.....++|
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~l~~L 355 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSF 355 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-CCCCCCCSSCCCC
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-cccccCccCCCCc
Confidence 888888876555666554 3444444455544443 33311 1457888887763 3333332445678
Q ss_pred cEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCC----CCCCCCcceEEEeccCccc-hhhhhhhccCCCCCCC
Q 047556 977 SSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPE----EGFPNNLVELKIRGVDVKM-YKAAIQWGLHRLTSLR 1051 (1175)
Q Consensus 977 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~L~~L~l~~~~~~~-l~~~~~~~l~~l~~L~ 1051 (1175)
++|++++|.....+|..+.++++|++|++++| .++.++. ...+++|++|++++|.... ++ +..+..+++|+
T Consensus 356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~l~~L~ 431 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY---DRTCAWAESIL 431 (562)
T ss_dssp CEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS---SCCCCCCTTCC
T ss_pred eEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccC---hhhhcCcccCC
Confidence 88888888766667888899999999999998 6766552 2346789999998776554 32 22477889999
Q ss_pred eeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCC--CCCCCcce
Q 047556 1052 RLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEV--GLPSSILW 1129 (1175)
Q Consensus 1052 ~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~ 1129 (1175)
.|++++|... ..+|. .++++|+.|++++ |+++.+|. .+.++++|+.|++++ +.++.+|.. ...++|+.
T Consensus 432 ~L~l~~n~l~--~~~~~-----~l~~~L~~L~L~~-N~l~~ip~-~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 432 VLNLSSNMLT--GSVFR-----CLPPKVKVLDLHN-NRIMSIPK-DVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp EEECCSSCCC--GGGGS-----SCCTTCSEEECCS-SCCCCCCT-TTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCC
T ss_pred EEECCCCCCC--cchhh-----hhcCcCCEEECCC-CcCcccCh-hhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCE
Confidence 9999997632 22222 2447899999999 58999984 455999999999999 568888873 34678999
Q ss_pred eeeccCc
Q 047556 1130 LNIWSCP 1136 (1175)
Q Consensus 1130 L~i~~cp 1136 (1175)
|++++||
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9999876
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1e-25 Score=263.23 Aligned_cols=404 Identities=22% Similarity=0.214 Sum_probs=197.8
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccc-cccccccCcccc-------------cEEeccCccccccC
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIR-NLPKSTCSLINL-------------QILLLRGCYYLLKL 664 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~l 664 (1175)
+.++|++|++++|.+..+| ..|+++++|++|++++|.+. .+|.+++++.+| ++|++++| .+..+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred ccccchhhhcccCchhhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence 4578999999999998888 78999999999999999987 789999999887 66777776 45556
Q ss_pred chhhhccCCCceeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcch
Q 047556 665 PSKMRKLINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASE 744 (1175)
Q Consensus 665 p~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~ 744 (1175)
|.. .++|++|++++|.+ ..+|..+ ++|+.|++..+.....+ .+
T Consensus 87 p~~---~~~L~~L~l~~n~l-~~lp~~~---~~L~~L~l~~n~l~~l~----~~-------------------------- 129 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSL-TELPELP---QSLKSLLVDNNNLKALS----DL-------------------------- 129 (454)
T ss_dssp CSC---CTTCSEEECCSSCC-SSCCCCC---TTCCEEECCSSCCSCCC----SC--------------------------
T ss_pred CCC---cCCCCEEEccCCcC-Ccccccc---CCCcEEECCCCccCccc----CC--------------------------
Confidence 552 35677777777663 3355432 45555544433221111 00
Q ss_pred hhhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCC
Q 047556 745 EILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTY 824 (1175)
Q Consensus 745 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 824 (1175)
.++|+.|+++.+.... ...+..+++|+.|++++|....+|.. .++|+.|++++|.+.+
T Consensus 130 -----~~~L~~L~L~~n~l~~-----------lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~- 187 (454)
T 1jl5_A 130 -----PPLLEYLGVSNNQLEK-----------LPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE- 187 (454)
T ss_dssp -----CTTCCEEECCSSCCSS-----------CCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS-
T ss_pred -----CCCCCEEECcCCCCCC-----------CcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc-
Confidence 0234444443332200 01245566667777766666665543 2466677777666644
Q ss_pred CCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCC
Q 047556 825 LPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSS 904 (1175)
Q Consensus 825 lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 904 (1175)
+|. +..+++|+.|+++++. + ..++ ..+++|+.|+++++ .++.++. .+.
T Consensus 188 l~~-~~~l~~L~~L~l~~N~-l----------------------~~l~--~~~~~L~~L~l~~n-~l~~lp~-----~~~ 235 (454)
T 1jl5_A 188 LPE-LQNLPFLTAIYADNNS-L----------------------KKLP--DLPLSLESIVAGNN-ILEELPE-----LQN 235 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSC-C----------------------SSCC--CCCTTCCEEECCSS-CCSSCCC-----CTT
T ss_pred Ccc-ccCCCCCCEEECCCCc-C----------------------CcCC--CCcCcccEEECcCC-cCCcccc-----cCC
Confidence 443 3444666666666542 1 1111 23357888888776 3444431 334
Q ss_pred CCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccC
Q 047556 905 SVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSC 984 (1175)
Q Consensus 905 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~ 984 (1175)
+++|+.|++++|. +..+|. .+++|+.|++++|.. ..+|..+++|+.|++++| .++.++ ..+.+|+.|++++|
T Consensus 236 l~~L~~L~l~~N~-l~~l~~---~~~~L~~L~l~~N~l-~~l~~~~~~L~~L~ls~N-~l~~l~--~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 236 LPFLTTIYADNNL-LKTLPD---LPPSLEALNVRDNYL-TDLPELPQSLTFLDVSEN-IFSGLS--ELPPNLYYLNASSN 307 (454)
T ss_dssp CTTCCEEECCSSC-CSSCCS---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSS-CCSEES--CCCTTCCEEECCSS
T ss_pred CCCCCEEECCCCc-CCcccc---cccccCEEECCCCcc-cccCcccCcCCEEECcCC-ccCccc--CcCCcCCEEECcCC
Confidence 7788888888874 344554 346788888888764 446777778888888776 345443 23467777777766
Q ss_pred cccccCccccCCC-CcccEEEeeCCCCCCCCCCCCCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccc
Q 047556 985 EKLEALPNDLHKL-NSLEHLYLQRCPSIVRFPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEA 1063 (1175)
Q Consensus 985 ~~l~~lp~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~ 1063 (1175)
. +..++ .+ ++|++|++++| .+..+|.. +++|++|++++|....++ . .+++|+.|++++|. +
T Consensus 308 ~-l~~i~----~~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~l~~lp----~---~l~~L~~L~L~~N~---l 369 (454)
T 1jl5_A 308 E-IRSLC----DLPPSLEELNVSNN-KLIELPAL--PPRLERLIASFNHLAEVP----E---LPQNLKQLHVEYNP---L 369 (454)
T ss_dssp C-CSEEC----CCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCSCCC----C---CCTTCCEEECCSSC---C
T ss_pred c-CCccc----CCcCcCCEEECCCC-cccccccc--CCcCCEEECCCCcccccc----c---hhhhccEEECCCCC---C
Confidence 4 23332 23 47777888777 56666653 567777777766655433 2 35677777777765 3
Q ss_pred cccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCCCCCCCcceeeeccCc
Q 047556 1064 ECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEVGLPSSILWLNIWSCP 1136 (1175)
Q Consensus 1064 ~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~cp 1136 (1175)
..+|. .|.++..|.. ++....+|. .+++|+.|++++ +.++.+|. +|++|+.|.+.+|.
T Consensus 370 ~~l~~------ip~~l~~L~~--n~~~~~i~~----~~~~L~~L~ls~-N~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 370 REFPD------IPESVEDLRM--NSHLAEVPE----LPQNLKQLHVET-NPLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp SSCCC------CCTTCCEEEC--CC------------------------------------------------
T ss_pred CcCCC------ChHHHHhhhh--ccccccccc----ccCcCCEEECCC-CcCCcccc--chhhHhheeCcCcc
Confidence 33331 3344444432 223333441 248899999999 45666664 67899999988875
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.5e-25 Score=278.20 Aligned_cols=491 Identities=16% Similarity=0.091 Sum_probs=304.8
Q ss_pred hHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCch-hhh
Q 047556 592 VFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPS-KMR 669 (1175)
Q Consensus 592 ~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~ 669 (1175)
+.+..|.++++|++|+|++|.|+.+++++|.++++|++|+|++|.|+.+|. .|.+|++|++|+|++| .+..+|. .|+
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~ 145 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIG 145 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCT
T ss_pred CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhh
Confidence 345678999999999999999999998899999999999999999999975 5899999999999999 6777765 489
Q ss_pred ccCCCceeeecCccccc-cCCccCCCCCCccccCceeeccCCCc-cCccccccccccccccccCCccCCCChhhcchhhh
Q 047556 670 KLINLRHLDITGAYLIK-EMPFGMKELKNLQALSNFIVGTGTRS-SGLKDLKSLTFLSGELCISRLENVTISREASEEIL 747 (1175)
Q Consensus 670 ~L~~L~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~-~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 747 (1175)
++++|++|++++|.+.. .+|..++.+++|++|++..+...... ..+..+.++..+...+. +........ ....
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~---ls~n~l~~i--~~~~ 220 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD---LSLNPMNFI--QPGA 220 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE---CTTCCCCEE--CTTT
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh---cccCccccc--Cccc
Confidence 99999999999998543 46778899999999988877655432 23444444433221111 111111000 0001
Q ss_pred cccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCC---CCCCCCCC--CCCCCccEEEEeCCCCC
Q 047556 748 YENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGK---RFPSWIGD--PSYSKMEVLILENCENC 822 (1175)
Q Consensus 748 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~p~~~~~--~~l~~L~~L~L~~~~~~ 822 (1175)
.....+..+.+..+.. ........+..+..++...+...... .+...... ..+..+..+.+..+...
T Consensus 221 ~~~~~~~~l~l~~n~~--------~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 221 FKEIRLHKLTLRNNFD--------SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp TTTCEEEEEEEESCCS--------SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccchhhhhhhhhcccc--------cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 1112233333322211 11112222333445555444322111 11110000 11334444444433322
Q ss_pred ---CCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCcc
Q 047556 823 ---TYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEE 899 (1175)
Q Consensus 823 ---~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~ 899 (1175)
...+..+.....++.+.+.++.............++.|.+.++..- .++. ...+.|+.+.+.+...-. .
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~-~~l~~L~~l~l~~n~~~~------~ 364 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGN------A 364 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES-SCCC-CBCTTCCEEEEESCCSCC------B
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc-CcCc-ccchhhhhcccccccCCC------C
Confidence 1223333344677777776644322222223344777777766422 2221 122466777666543211 1
Q ss_pred ccCCCCCCcCeEEeecCCCCC--cCCCCCCCcCccceEEeecCCCCCccC--CCCCCCCEEeeCCCCCccccccCCC--C
Q 047556 900 DATSSSVTLKRLGIRRCPELT--SLSPGIRLPEALEQLYIWDCQKLESIP--DGLHNVQRIDIQRCPSLVSLAERGL--P 973 (1175)
Q Consensus 900 ~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~~p--~~~~~L~~L~l~~~~~L~~l~~~~~--~ 973 (1175)
.....+++|+.|++++|.... ..+.......+|+.|++..+......+ ..+++|+.+++..+......+...+ .
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc
Confidence 111236788888888875432 122223345678888888776433221 2457788888876644443333222 3
Q ss_pred CCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCC--CCCCCcceEEEeccCccchhhhhhhccCCCCCCC
Q 047556 974 ITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEE--GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLR 1051 (1175)
Q Consensus 974 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~ 1051 (1175)
.++..++++.+......|..+..+++|+.|++++|.....+++. ..+++|++|++++|....+ .|..|.++++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l---~~~~f~~l~~L~ 521 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSLQ 521 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCC
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc---ChHHHcCCCCCC
Confidence 57888888888766667777888999999999998655543332 2357899999987765544 366788999999
Q ss_pred eeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCC-CCCCceeccCCC
Q 047556 1052 RLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSL-TSLEFLWIDDCP 1113 (1175)
Q Consensus 1052 ~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l-~~L~~L~l~~c~ 1113 (1175)
.|+|++|. +..++...+ ..+++|+.|+|++ |+++.+++..+.++ ++|+.|+|++||
T Consensus 522 ~L~Ls~N~---l~~l~~~~~--~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 522 VLNMSHNN---FFSLDTFPY--KCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EEECTTSC---CCBCCCGGG--TTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EEECCCCc---CCCCChhHH--hCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999976 667766554 4568999999999 78999988888888 689999999865
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=9.8e-25 Score=264.86 Aligned_cols=421 Identities=19% Similarity=0.201 Sum_probs=241.3
Q ss_pred HHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccC--chhhhc
Q 047556 593 FSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKL--PSKMRK 670 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~ 670 (1175)
.+..|.++++|++|+|++|.++.++++.|.++++|++|+|++|.++.+|.. .+++|++|+|++| .+..+ |..+++
T Consensus 68 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~ 144 (562)
T 3a79_B 68 RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGN 144 (562)
T ss_dssp CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGG
T ss_pred ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcc
Confidence 345678888899999998888888778888888999999999888888877 7888999999888 45554 477888
Q ss_pred cCCCceeeecCccccccCCccCCCCCCc--cccCceeecc--CC-CccCccccccccccccccccCCccCCCChhhcchh
Q 047556 671 LINLRHLDITGAYLIKEMPFGMKELKNL--QALSNFIVGT--GT-RSSGLKDLKSLTFLSGELCISRLENVTISREASEE 745 (1175)
Q Consensus 671 L~~L~~L~l~~~~~~~~~p~~~~~L~~L--~~L~~~~~~~--~~-~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~ 745 (1175)
+++|++|++++|.+.. ..+..+++| +.|++..+.. .. .+..+..+.. +.+.. .+............
T Consensus 145 l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l-----~l~~n~~~~~~~~~ 215 (562)
T 3a79_B 145 LTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-TVLHL-----VFHPNSLFSVQVNM 215 (562)
T ss_dssp CTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-EEEEE-----EECSSSCCCCCCEE
T ss_pred cCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCc-ceEEE-----EecCccchhhhhhh
Confidence 8899999998887443 234555555 7777776654 22 2222332221 11211 11111112222223
Q ss_pred hhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCC-----CCCCCCCCCCCCCccEEEEeCCC
Q 047556 746 ILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGK-----RFPSWIGDPSYSKMEVLILENCE 820 (1175)
Q Consensus 746 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~~~ 820 (1175)
.+..+.+|+.|++..+.. ....-......+...++|+.|++.++... .++.+.. .++|+.|++++|.
T Consensus 216 ~~~~l~~L~~L~l~~n~~-----~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~ 287 (562)
T 3a79_B 216 SVNALGHLQLSNIKLNDE-----NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLT 287 (562)
T ss_dssp EESSEEEEEEEEEECCST-----THHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEE
T ss_pred cccccceEEEeccccccc-----ccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccE
Confidence 344566777777765421 00111122334555677777777654321 1222222 3478888888887
Q ss_pred CCCCCCCCcCC--CCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCc
Q 047556 821 NCTYLPSTVLW--SSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGE 898 (1175)
Q Consensus 821 ~~~~lp~~~~~--~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 898 (1175)
+.+.+|..+.. .++|+.|.+.++.. .. + .+|. ..+..+.
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~-------------------~~-~------~~p~----------~~~~~~~--- 328 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKN-------------------QV-F------LFSK----------EALYSVF--- 328 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEE-------------------CC-C------SSCH----------HHHHHHH---
T ss_pred eeccccchhhhcccccchheehhhccc-------------------ce-e------ecCh----------hhhhhhh---
Confidence 77666654411 13333333322110 00 0 0000 0000000
Q ss_pred cccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCC---CCCCEEeeCCCCCccccccCCCCCC
Q 047556 899 EDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGL---HNVQRIDIQRCPSLVSLAERGLPIT 975 (1175)
Q Consensus 899 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~---~~L~~L~l~~~~~L~~l~~~~~~~~ 975 (1175)
..++|+.|++++|.... .+ ....+++|++|++++|...+.+|..+ ++|+.|+++++ .++.+
T Consensus 329 -----~~~~L~~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-------- 392 (562)
T 3a79_B 329 -----AEMNIKMLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNF-------- 392 (562)
T ss_dssp -----HTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBT--------
T ss_pred -----ccCcceEEEccCCCccc-cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCc--------
Confidence 01235566666654321 11 01345666777776666554444332 33444444332 11111
Q ss_pred ccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCC-CCCC--CCCCCcceEEEeccCccchhhhhhhccCCCCCCCe
Q 047556 976 ISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVR-FPEE--GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRR 1052 (1175)
Q Consensus 976 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~--~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~ 1052 (1175)
..+|..+..+++|++|++++| .+.. +|.. ..+++|++|++++|... +..+..+. ++|+.
T Consensus 393 ------------~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~--~~L~~ 454 (562)
T 3a79_B 393 ------------FKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLP--PKVKV 454 (562)
T ss_dssp ------------THHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCC---GGGGSSCC--TTCSE
T ss_pred ------------ccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCC---cchhhhhc--CcCCE
Confidence 123345667777777777777 3443 5543 23467777777665543 23332222 68888
Q ss_pred eEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCC
Q 047556 1053 LWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCP 1113 (1175)
Q Consensus 1053 L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1113 (1175)
|++++|. +..+|.+.+ .+++|+.|++++ |.++.+|...+..+++|+.|++++|+
T Consensus 455 L~L~~N~---l~~ip~~~~---~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 455 LDLHNNR---IMSIPKDVT---HLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSC---CCCCCTTTT---SSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCc---CcccChhhc---CCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 8888875 567777653 457888999988 68888886558899999999999965
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=3.8e-24 Score=253.15 Aligned_cols=109 Identities=24% Similarity=0.207 Sum_probs=86.4
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccc-cc-cccccCcccccEEeccCccccccCchhhhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIR-NL-PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 678 (1175)
++|++|+|++|.++.+++..|+++++|++|+|++|.+. .+ |..|.++++|++|+|++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67899999999988887788899999999999998886 55 55688899999999999855455578888999999999
Q ss_pred ecCccccccCCcc--CCCCCCccccCceeeccC
Q 047556 679 ITGAYLIKEMPFG--MKELKNLQALSNFIVGTG 709 (1175)
Q Consensus 679 l~~~~~~~~~p~~--~~~L~~L~~L~~~~~~~~ 709 (1175)
+++|.+.+.+|.. ++.+++|++|++..+...
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 142 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence 9998865545544 777888888876665443
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4.1e-24 Score=252.90 Aligned_cols=384 Identities=17% Similarity=0.167 Sum_probs=235.5
Q ss_pred ccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccC-chhhhccCCCceeeec
Q 047556 603 LRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKL-PSKMRKLINLRHLDIT 680 (1175)
Q Consensus 603 Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 680 (1175)
-+.++.+++.++.+|. +. ++|++|+|++|.++.+ |..|.++++|++|+|++|.....+ |..|.++++|++|+++
T Consensus 12 ~~~~~c~~~~l~~lp~--l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCSSCCC--CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcccCCC--CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3467888889999983 33 7999999999999987 778999999999999999655455 5679999999999999
Q ss_pred CccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccccc
Q 047556 681 GAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQW 760 (1175)
Q Consensus 681 ~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 760 (1175)
+|.+....|..++++++|++|++..+......
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------------------------------------ 119 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAV------------------------------------------------ 119 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHH------------------------------------------------
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccc------------------------------------------------
Confidence 99966666888888888888865544211100
Q ss_pred ccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCC-CCC-CCCCCCCCccEEEEeCCCCCCCCCCCcCCC--CCcc
Q 047556 761 GSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRF-PSW-IGDPSYSKMEVLILENCENCTYLPSTVLWS--SSLK 836 (1175)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~--~~L~ 836 (1175)
.....+..+++|+.|++++|....+ |.. +. .+++|+.|++++|.+.+..|..+..+ +.|+
T Consensus 120 --------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 120 --------------LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL--NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp --------------HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG--GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred --------------cCcccccCcccCCEEECCCCccCccCcccccC--CCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 0011244466777788877776665 433 33 37888888888888776666554432 4556
Q ss_pred EEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecC
Q 047556 837 MLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRC 916 (1175)
Q Consensus 837 ~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~ 916 (1175)
.|+++++. +..+... .+. ... ......+++|+.|++++|
T Consensus 184 ~L~l~~n~-l~~~~~~----------------------~~~-------~~~-----------~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 184 LLRLSSIT-LQDMNEY----------------------WLG-------WEK-----------CGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp EEECTTCB-CTTCSTT----------------------CTT-------HHH-----------HCCTTTTCEEEEEECTTS
T ss_pred ccccccCc-ccccchh----------------------hcc-------ccc-----------cccccccceeeeEecCCC
Confidence 66665532 1111000 000 000 000011345666666666
Q ss_pred CCCCcCCCCCC---CcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccCC-CCCCccEEEEccCcccccCcc
Q 047556 917 PELTSLSPGIR---LPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERG-LPITISSVRIWSCEKLEALPN 992 (1175)
Q Consensus 917 ~~l~~~~~~~~---~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~-~~~~L~~L~l~~~~~l~~lp~ 992 (1175)
......|..+. ..++|+.|++++|........ ...+. .+....... ...+|+.|++++|......|.
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFK--------DPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSC--------CCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred cccccchhhhhccccccceeeEeeccccccccccc-hhhhc--------cCcccccccccccCceEEEecCccccccchh
Confidence 44333322211 125667777766654332110 01111 011111111 124677788887776666777
Q ss_pred ccCCCCcccEEEeeCCCCCCCCCCCC--CCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhh
Q 047556 993 DLHKLNSLEHLYLQRCPSIVRFPEEG--FPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEE 1070 (1175)
Q Consensus 993 ~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~ 1070 (1175)
.+..+++|++|++++| .+..++... .+++|++|++++|....+ .+..|.++++|+.|++++|. +..++...
T Consensus 294 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~ 366 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLGSI---DSRMFENLDKLEVLDLSYNH---IRALGDQS 366 (455)
T ss_dssp TTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEE---CGGGGTTCTTCCEEECCSSC---CCEECTTT
T ss_pred hcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCccCCc---ChhHhcCcccCCEEECCCCc---ccccChhh
Confidence 8888889999999888 555554332 346777777766654333 24456777777777777765 34443322
Q ss_pred hhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCC
Q 047556 1071 MRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPN 1114 (1175)
Q Consensus 1071 ~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 1114 (1175)
+ ..+++|++|++++ |+++.++...+..+++|+.|+|++|+-
T Consensus 367 ~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 367 F--LGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp T--TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred c--cccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCc
Confidence 2 3446777777777 567777666667777777777777543
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.5e-23 Score=244.91 Aligned_cols=368 Identities=20% Similarity=0.226 Sum_probs=214.2
Q ss_pred CcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCC-------------ceeeecCccccccCC
Q 047556 623 GWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINL-------------RHLDITGAYLIKEMP 689 (1175)
Q Consensus 623 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L-------------~~L~l~~~~~~~~~p 689 (1175)
+..+|++|++++|.+..+|.+|++|++|++|++++|...+.+|..++++++| ++|++++|. +..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 3578999999999998999999999999999999986667888888888876 445555444 23333
Q ss_pred ccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCc
Q 047556 690 FGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRN 769 (1175)
Q Consensus 690 ~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 769 (1175)
.. .++|+.| +++++....+.
T Consensus 88 ~~---~~~L~~L-------------------------------------------------------~l~~n~l~~lp-- 107 (454)
T 1jl5_A 88 EL---PPHLESL-------------------------------------------------------VASCNSLTELP-- 107 (454)
T ss_dssp SC---CTTCSEE-------------------------------------------------------ECCSSCCSSCC--
T ss_pred CC---cCCCCEE-------------------------------------------------------EccCCcCCccc--
Confidence 21 1233333 22222110000
Q ss_pred hhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCccee
Q 047556 770 EDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHL 849 (1175)
Q Consensus 770 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l 849 (1175)
..+++|+.|++++|....+|.. .++|+.|++++|.+.+ +|. +..+++|+.|+++++. ++.+
T Consensus 108 -----------~~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~N~-l~~l 168 (454)
T 1jl5_A 108 -----------ELPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNS-LKKL 168 (454)
T ss_dssp -----------CCCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSC-CSCC
T ss_pred -----------cccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-Ccc-cCCCCCCCEEECCCCc-Cccc
Confidence 0124666677766666655532 2567777777776654 553 4555777777776642 2222
Q ss_pred ccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCc
Q 047556 850 VDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLP 929 (1175)
Q Consensus 850 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 929 (1175)
+ ..+++|+.|+++++ .++.++ ..+.+++|+.|++++|.. ..+|. .+
T Consensus 169 p------------------------~~~~~L~~L~L~~n-~l~~l~-----~~~~l~~L~~L~l~~N~l-~~l~~---~~ 214 (454)
T 1jl5_A 169 P------------------------DLPPSLEFIAAGNN-QLEELP-----ELQNLPFLTAIYADNNSL-KKLPD---LP 214 (454)
T ss_dssp C------------------------CCCTTCCEEECCSS-CCSSCC-----CCTTCTTCCEEECCSSCC-SSCCC---CC
T ss_pred C------------------------CCcccccEEECcCC-cCCcCc-----cccCCCCCCEEECCCCcC-CcCCC---Cc
Confidence 1 11235666666654 233332 123478899999999854 44554 34
Q ss_pred CccceEEeecCCCCCccCC--CCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeC
Q 047556 930 EALEQLYIWDCQKLESIPD--GLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQR 1007 (1175)
Q Consensus 930 ~~L~~L~l~~~~~l~~~p~--~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 1007 (1175)
++|++|++++|... .+|. .+++|+.|+++++ .++.++. .+.+|+.|++++|. +..+|.. +++|++|++++
T Consensus 215 ~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPELQNLPFLTTIYADNN-LLKTLPD--LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSE 286 (454)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSS-CCSSCCS--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCS
T ss_pred CcccEEECcCCcCC-cccccCCCCCCCEEECCCC-cCCcccc--cccccCEEECCCCc-ccccCcc---cCcCCEEECcC
Confidence 68999999999654 6664 4578999999986 5666553 45799999999885 5567753 48999999999
Q ss_pred CCCCCCCCCCCCCCCcceEEEeccCccchhhhhhhccCCC-CCCCeeEeccCCCccccccchhhhhccCCCcccceeecC
Q 047556 1008 CPSIVRFPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRL-TSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIG 1086 (1175)
Q Consensus 1008 c~~l~~lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l-~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~ 1086 (1175)
| .++.+|. .+++|+.|++++|....+. .+ ++|+.|++++|. +..+|. .+++|+.|++++
T Consensus 287 N-~l~~l~~--~~~~L~~L~l~~N~l~~i~--------~~~~~L~~L~Ls~N~---l~~lp~------~~~~L~~L~L~~ 346 (454)
T 1jl5_A 287 N-IFSGLSE--LPPNLYYLNASSNEIRSLC--------DLPPSLEELNVSNNK---LIELPA------LPPRLERLIASF 346 (454)
T ss_dssp S-CCSEESC--CCTTCCEEECCSSCCSEEC--------CCCTTCCEEECCSSC---CSCCCC------CCTTCCEEECCS
T ss_pred C-ccCcccC--cCCcCCEEECcCCcCCccc--------CCcCcCCEEECCCCc---cccccc------cCCcCCEEECCC
Confidence 9 6776664 4689999999887765432 33 589999999976 555664 358999999999
Q ss_pred CcCCcccCcCCCCCCCCCCceeccCCCCCCcC---CCC-C-------------CCCCcceeeeccCchh
Q 047556 1087 FRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSF---PEV-G-------------LPSSILWLNIWSCPML 1138 (1175)
Q Consensus 1087 c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l---p~~-~-------------~~~sL~~L~i~~cp~L 1138 (1175)
|.++.+|. .+++|+.|++++| .+..+ |.. + .+++|+.|++++|+.-
T Consensus 347 -N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 347 -NHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp -SCCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC-----------------------
T ss_pred -Cccccccc----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 58888884 5789999999995 45554 331 1 1267888888887643
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.4e-23 Score=248.00 Aligned_cols=187 Identities=20% Similarity=0.232 Sum_probs=100.4
Q ss_pred CCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 600 CRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
+++|+.|+++++.+..++ .+..+++|++|+|++|.+..+|. +.++++|++|++++| .+..+|. ++++++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 445666666666666655 25566666666666666666655 666666666666666 4444544 666666666666
Q ss_pred cCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccc
Q 047556 680 TGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQ 759 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 759 (1175)
++|. +..+|. +.++++|++|++..+.....+ .+..+++|+.|. +.
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~--------------------------------l~ 164 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLS--------------------------------FG 164 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEE--------------------------------EE
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEee--------------------------------cC
Confidence 6665 333443 566666666665555433322 233333333222 11
Q ss_pred cccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEe
Q 047556 760 WGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLE 839 (1175)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~ 839 (1175)
.. . . ....+..+++|+.|+++++....++. +. .+++|+.|++++|.+.+..| +..+++|+.|+
T Consensus 165 ~~-~---~--------~~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 227 (466)
T 1o6v_A 165 NQ-V---T--------DLKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQISDITP--LGILTNLDELS 227 (466)
T ss_dssp ES-C---C--------CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred Cc-c---c--------CchhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCccccccc--ccccCCCCEEE
Confidence 00 0 0 00113345566666666666555443 22 26677777777776654433 33346666666
Q ss_pred eccC
Q 047556 840 IHNC 843 (1175)
Q Consensus 840 L~~~ 843 (1175)
++++
T Consensus 228 l~~n 231 (466)
T 1o6v_A 228 LNGN 231 (466)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6553
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=7e-24 Score=247.91 Aligned_cols=104 Identities=18% Similarity=0.107 Sum_probs=79.1
Q ss_pred hhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCc
Q 047556 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLR 675 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 675 (1175)
.+.++++|++|++++|.++++| .++.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+| ++++++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 3567788888888888888776 5788888888888888888776 788888888888888 566665 77888888
Q ss_pred eeeecCccccccCCccCCCCCCccccCceeeccC
Q 047556 676 HLDITGAYLIKEMPFGMKELKNLQALSNFIVGTG 709 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~ 709 (1175)
+|++++|. +..+| ++.+++|+.|++..+...
T Consensus 110 ~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 110 YLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp EEECCSSC-CSCCC--CTTCTTCCEEECTTSCCS
T ss_pred EEECCCCc-CCeec--CCCCCcCCEEECCCCccc
Confidence 88888887 44454 777788888776655443
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=5.6e-23 Score=240.24 Aligned_cols=306 Identities=13% Similarity=0.084 Sum_probs=175.3
Q ss_pred CccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCccCCCCCCc
Q 047556 619 GSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFGMKELKNL 698 (1175)
Q Consensus 619 ~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L 698 (1175)
..++++++|++|++++|.++.+| .++.+++|++|+|++| .+..+| ++.+++|++|++++|. +..+| ++++++|
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L 108 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKL 108 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTC
T ss_pred cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcC
Confidence 46888999999999999999998 7999999999999999 677776 8999999999999998 44454 7888888
Q ss_pred cccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHHHHHh
Q 047556 699 QALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLG 778 (1175)
Q Consensus 699 ~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 778 (1175)
+.|++..+.....+ +..
T Consensus 109 ~~L~L~~N~l~~l~--~~~------------------------------------------------------------- 125 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQ------------------------------------------------------------- 125 (457)
T ss_dssp CEEECCSSCCSCCC--CTT-------------------------------------------------------------
T ss_pred CEEECCCCcCCeec--CCC-------------------------------------------------------------
Confidence 88876655332211 122
Q ss_pred cCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccc
Q 047556 779 MLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLE 858 (1175)
Q Consensus 779 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~ 858 (1175)
+++|+.|++++|....++ +. .+++|+.|++++|...+.++ +..+++|+.|+++++. ++.++...
T Consensus 126 ----l~~L~~L~l~~N~l~~l~--l~--~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~-l~~l~l~~----- 189 (457)
T 3bz5_A 126 ----NPLLTYLNCARNTLTEID--VS--HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK-ITELDVSQ----- 189 (457)
T ss_dssp ----CTTCCEEECTTSCCSCCC--CT--TCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSC-CCCCCCTT-----
T ss_pred ----CCcCCEEECCCCccceec--cc--cCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCc-cceecccc-----
Confidence 233444444444333332 22 24445555555554333331 2223445555554431 11111111
Q ss_pred eEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEee
Q 047556 859 SLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIW 938 (1175)
Q Consensus 859 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 938 (1175)
.++|+.|.++++. ++.++ .+.+++|+.|++++|.. +.+| +..+++|+.|+++
T Consensus 190 ------------------l~~L~~L~l~~N~-l~~~~------l~~l~~L~~L~Ls~N~l-~~ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 190 ------------------NKLLNRLNCDTNN-ITKLD------LNQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCS 241 (457)
T ss_dssp ------------------CTTCCEEECCSSC-CSCCC------CTTCTTCSEEECCSSCC-SCCC--CTTCTTCSEEECC
T ss_pred ------------------CCCCCEEECcCCc-CCeec------cccCCCCCEEECcCCcc-cccC--ccccCCCCEEEee
Confidence 1233333333321 11111 12256677777777643 3355 4466777777777
Q ss_pred cCCCCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCC-
Q 047556 939 DCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEE- 1017 (1175)
Q Consensus 939 ~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~- 1017 (1175)
+|...+..+..+++|+.|+++++ +|+.|++++|..+..+| +..+++|+.|++++|+.++.+|..
T Consensus 242 ~N~l~~~~~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~ 306 (457)
T 3bz5_A 242 VNPLTELDVSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA 306 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT
T ss_pred CCcCCCcCHHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC
Confidence 77655544455666666665442 34445555555555554 345666666666666555554431
Q ss_pred --------CCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCC
Q 047556 1018 --------GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCD 1059 (1175)
Q Consensus 1018 --------~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~ 1059 (1175)
...++|++|++++|....+ .+.++++|+.|++++|.
T Consensus 307 ~~L~~L~l~~~~~L~~L~L~~N~l~~l------~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 307 AGITELDLSQNPKLVYLYLNNTELTEL------DVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCCCSCC------CCTTCTTCSEEECCSSC
T ss_pred CcceEechhhcccCCEEECCCCccccc------ccccCCcCcEEECCCCC
Confidence 0113555555554444332 14556666666666644
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=4.2e-22 Score=235.42 Aligned_cols=350 Identities=16% Similarity=0.195 Sum_probs=208.9
Q ss_pred CCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCccCCCCCCcccc
Q 047556 622 SGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFGMKELKNLQAL 701 (1175)
Q Consensus 622 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 701 (1175)
..+.+|+.|+++++.+..+|. +..+++|++|+|++| .+..+|. +.++++|++|++++|. +..++. ++++++|+.|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEE
Confidence 457899999999999999985 889999999999999 6777877 9999999999999998 445554 8888888888
Q ss_pred CceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHHHHHhcCC
Q 047556 702 SNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLK 781 (1175)
Q Consensus 702 ~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 781 (1175)
++..+.....+ . +.
T Consensus 118 ~L~~n~l~~~~-~-----------------------------------------------------------------~~ 131 (466)
T 1o6v_A 118 TLFNNQITDID-P-----------------------------------------------------------------LK 131 (466)
T ss_dssp ECCSSCCCCCG-G-----------------------------------------------------------------GT
T ss_pred ECCCCCCCCCh-H-----------------------------------------------------------------Hc
Confidence 76554322211 0 12
Q ss_pred CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEE
Q 047556 782 PCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLR 861 (1175)
Q Consensus 782 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~ 861 (1175)
.+++|+.|++++|....+|. +. .+++|+.|.+.+ .... ++. +..+++|+.|+++++. +..+.
T Consensus 132 ~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~-~~~~-~~~-~~~l~~L~~L~l~~n~-l~~~~----------- 193 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDISA-LS--GLTSLQQLSFGN-QVTD-LKP-LANLTTLERLDISSNK-VSDIS----------- 193 (466)
T ss_dssp TCTTCSEEEEEEEEECCCGG-GT--TCTTCSEEEEEE-SCCC-CGG-GTTCTTCCEEECCSSC-CCCCG-----------
T ss_pred CCCCCCEEECCCCccCCChh-hc--cCCcccEeecCC-cccC-chh-hccCCCCCEEECcCCc-CCCCh-----------
Confidence 23445555555544444332 22 255555555542 1211 122 2333555555555432 11110
Q ss_pred EccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCC
Q 047556 862 ITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQ 941 (1175)
Q Consensus 862 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 941 (1175)
...-.++|+.|.++++. +..+.. .+.+++|+.|++++|.. ..++ .+..+++|+.|++++|.
T Consensus 194 -----------~l~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 194 -----------VLAKLTNLESLIATNNQ-ISDITP-----LGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQ 254 (466)
T ss_dssp -----------GGGGCTTCSEEECCSSC-CCCCGG-----GGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSC
T ss_pred -----------hhccCCCCCEEEecCCc-cccccc-----ccccCCCCEEECCCCCc-ccch-hhhcCCCCCEEECCCCc
Confidence 00001223333333221 110000 11244555555555532 2221 22344455555555543
Q ss_pred CCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCCCCC
Q 047556 942 KLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPN 1021 (1175)
Q Consensus 942 ~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~ 1021 (1175)
. ..++.....++|+.|++++|. +..++. +..+++|+.|++++| .+..++....++
T Consensus 255 l----------------------~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~ 309 (466)
T 1o6v_A 255 I----------------------SNLAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDISPISNLK 309 (466)
T ss_dssp C----------------------CCCGGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCT
T ss_pred c----------------------ccchhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCC-cccCchhhcCCC
Confidence 2 222212223467788888774 444544 788899999999998 566666555678
Q ss_pred CcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCC
Q 047556 1022 NLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSL 1101 (1175)
Q Consensus 1022 ~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l 1101 (1175)
+|+.|++++|....+. + +..+++|+.|++++|. +..++. +..+++|+.|++++ |.++.+++ +..+
T Consensus 310 ~L~~L~L~~n~l~~~~---~--~~~l~~L~~L~l~~n~---l~~~~~----l~~l~~L~~L~l~~-n~l~~~~~--~~~l 374 (466)
T 1o6v_A 310 NLTYLTLYFNNISDIS---P--VSSLTKLQRLFFYNNK---VSDVSS----LANLTNINWLSAGH-NQISDLTP--LANL 374 (466)
T ss_dssp TCSEEECCSSCCSCCG---G--GGGCTTCCEEECCSSC---CCCCGG----GTTCTTCCEEECCS-SCCCBCGG--GTTC
T ss_pred CCCEEECcCCcCCCch---h--hccCccCCEeECCCCc---cCCchh----hccCCCCCEEeCCC-CccCccch--hhcC
Confidence 8889988877665543 2 5678889999998876 344432 13567888888888 46666653 7788
Q ss_pred CCCCceeccCCCCCCcCCC
Q 047556 1102 TSLEFLWIDDCPNLKSFPE 1120 (1175)
Q Consensus 1102 ~~L~~L~l~~c~~l~~lp~ 1120 (1175)
++|+.|++++|+ +..+|.
T Consensus 375 ~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 375 TRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp TTCCEEECCCEE-EECCCB
T ss_pred CCCCEEeccCCc-ccCCch
Confidence 888888888853 545543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-21 Score=226.20 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=76.4
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchhhhccCCCcee
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSKMRKLINLRHL 677 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 677 (1175)
.++++++|++++|.++.+|+..+..+++|++|+|++|.+..+|. .+.++++|++|+|++|......|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46788999999999988887667888999999999998888764 78889999999999884333335567888888888
Q ss_pred eecCccccccCCcc-CCCCCCcccc
Q 047556 678 DITGAYLIKEMPFG-MKELKNLQAL 701 (1175)
Q Consensus 678 ~l~~~~~~~~~p~~-~~~L~~L~~L 701 (1175)
++++|. +..+|.. ++++++|++|
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEE
Confidence 888887 4455543 2344444433
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=9.3e-22 Score=223.33 Aligned_cols=102 Identities=18% Similarity=0.292 Sum_probs=81.1
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCce
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRH 676 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 676 (1175)
+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .+.++++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSE
T ss_pred chhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCE
Confidence 356788999999999888886 48888999999999999888877 888999999999998 677776 4888999999
Q ss_pred eeecCccccccCCccCCCCCCccccCcee
Q 047556 677 LDITGAYLIKEMPFGMKELKNLQALSNFI 705 (1175)
Q Consensus 677 L~l~~~~~~~~~p~~~~~L~~L~~L~~~~ 705 (1175)
|++++|. +..+|. +..+++|+.|++..
T Consensus 115 L~l~~n~-i~~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 115 LYLNEDN-ISDISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECTT
T ss_pred EECcCCc-ccCchh-hccCCceeEEECCC
Confidence 9998888 444554 66666666665443
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4e-21 Score=228.38 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=54.3
Q ss_pred ccCCCCcccEEEeeCCCCCCCCCCCC--CCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhh
Q 047556 993 DLHKLNSLEHLYLQRCPSIVRFPEEG--FPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEE 1070 (1175)
Q Consensus 993 ~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~ 1070 (1175)
.+..+++|+.|++++| .+..++... .+++|+.|++++|....+ .+..|..+++|+.|++++|. +..++...
T Consensus 243 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~---l~~~~~~~ 315 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVV---EPYAFRGLNYLRVLNVSGNQ---LTTLEESV 315 (477)
T ss_dssp HHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCSEE---CTTTBTTCTTCCEEECCSSC---CSCCCGGG
T ss_pred HhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCccceE---CHHHhcCcccCCEEECCCCc---CceeCHhH
Confidence 4556666666666666 444444322 235566666655444332 24467888999999999876 66677655
Q ss_pred hhccCCCcccceeecCC
Q 047556 1071 MRMMLPTSLCFLNIIGF 1087 (1175)
Q Consensus 1071 ~~~~~~~sL~~L~l~~c 1087 (1175)
| ..+++|+.|+|+++
T Consensus 316 ~--~~l~~L~~L~l~~N 330 (477)
T 2id5_A 316 F--HSVGNLETLILDSN 330 (477)
T ss_dssp B--SCGGGCCEEECCSS
T ss_pred c--CCCcccCEEEccCC
Confidence 4 34578888888884
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=231.27 Aligned_cols=182 Identities=23% Similarity=0.270 Sum_probs=132.7
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchh-hhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 678 (1175)
+++++|+|++|.++.+++..|.++++|++|+|++|.+..+ |..|.++++|++|+|++| .+..+|.. |.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 5789999999999998878899999999999999999877 778999999999999998 67777654 78899999999
Q ss_pred ecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccc
Q 047556 679 ITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSL 758 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 758 (1175)
+++|.+....|..+..+++|+.|++..+......
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------------------------------- 144 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS---------------------------------------------- 144 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC----------------------------------------------
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeC----------------------------------------------
Confidence 9999866666767788888887765443211100
Q ss_pred ccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccE
Q 047556 759 QWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSW-IGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKM 837 (1175)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 837 (1175)
...+..+++|+.|++++|....+|.. +. .+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 145 ------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 204 (477)
T 2id5_A 145 ------------------HRAFSGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204 (477)
T ss_dssp ------------------TTSSTTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred ------------------hhhccCCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence 01233456677777777766666543 33 3677888888877776655555666677777
Q ss_pred EeeccCcCccee
Q 047556 838 LEIHNCKNLQHL 849 (1175)
Q Consensus 838 L~L~~~~~l~~l 849 (1175)
|+++++..+..+
T Consensus 205 L~l~~~~~~~~~ 216 (477)
T 2id5_A 205 LEISHWPYLDTM 216 (477)
T ss_dssp EEEECCTTCCEE
T ss_pred eeCCCCcccccc
Confidence 777766544443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.8e-21 Score=237.12 Aligned_cols=91 Identities=14% Similarity=0.214 Sum_probs=72.8
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchhhhccCCCcee
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSKMRKLINLRHL 677 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 677 (1175)
.+.++++|++++|.+..+|+..|.++++|++|+|++|.+..+|. .|+.+++|++|+|++|......|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788999999999999987778889999999999999987754 78899999999999984334344557888999999
Q ss_pred eecCccccccCCc
Q 047556 678 DITGAYLIKEMPF 690 (1175)
Q Consensus 678 ~l~~~~~~~~~p~ 690 (1175)
++++|. +..+|.
T Consensus 129 ~L~~n~-l~~l~~ 140 (597)
T 3oja_B 129 VLERND-LSSLPR 140 (597)
T ss_dssp ECCSSC-CCCCCT
T ss_pred EeeCCC-CCCCCH
Confidence 998887 444443
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=5.2e-21 Score=220.68 Aligned_cols=305 Identities=16% Similarity=0.129 Sum_probs=196.4
Q ss_pred cccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccc
Q 047556 559 EVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIR 638 (1175)
Q Consensus 559 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~ 638 (1175)
.+.+++.+.+.++.. ..+++..|..+++|++|+|++|.++.+++..|..+++|++|+|++|.+.
T Consensus 43 ~l~~l~~l~l~~~~l----------------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 106 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM----------------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106 (390)
T ss_dssp GGCCCSEEEEESCEE----------------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCCceEEEecCCch----------------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC
Confidence 456777776654421 2234566889999999999999999999889999999999999999999
Q ss_pred ccc-ccccCcccccEEeccCccccccCchh-hhccCCCceeeecCccccccCCccCCCCCCccccCceeeccCCCccCcc
Q 047556 639 NLP-KSTCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLK 716 (1175)
Q Consensus 639 ~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~ 716 (1175)
.+| ..++++++|++|+|++| .+..+|.. ++++++|++|++++|.+....|..+..+++|+.|++..+.....+ +.
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~ 183 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LS 183 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GG
T ss_pred cCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cc
Confidence 885 55899999999999999 77788876 589999999999999965555666899999999987766543321 23
Q ss_pred ccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCC
Q 047556 717 DLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGG 796 (1175)
Q Consensus 717 ~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 796 (1175)
.++ +|+.|.+..+.. ..+..+++|+.|+++++..
T Consensus 184 ~l~--------------------------------~L~~L~l~~n~l--------------~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 184 LIP--------------------------------SLFHANVSYNLL--------------STLAIPIAVEELDASHNSI 217 (390)
T ss_dssp GCT--------------------------------TCSEEECCSSCC--------------SEEECCSSCSEEECCSSCC
T ss_pred ccc--------------------------------ccceeecccccc--------------cccCCCCcceEEECCCCee
Confidence 333 333333332211 1122345677777777777
Q ss_pred CCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCC
Q 047556 797 KRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKL 876 (1175)
Q Consensus 797 ~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~ 876 (1175)
..+|... +++|+.|++++|.+.+. ..+..+++|+.|+++++. +..+..... .-
T Consensus 218 ~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~-l~~~~~~~~--------------------~~ 270 (390)
T 3o6n_A 218 NVVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE-LEKIMYHPF--------------------VK 270 (390)
T ss_dssp CEEECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-CCEEESGGG--------------------TT
T ss_pred eeccccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCc-CCCcChhHc--------------------cc
Confidence 6666543 46788888888777543 334445777777777643 222211100 11
Q ss_pred CCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEE
Q 047556 877 PSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRI 956 (1175)
Q Consensus 877 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L 956 (1175)
.++|+.|.++++. ++.++.. ...+++|+.|++++|. +..+|..+..+++|+.|++++|+........+++|+.|
T Consensus 271 l~~L~~L~L~~n~-l~~~~~~----~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L 344 (390)
T 3o6n_A 271 MQRLERLYISNNR-LVALNLY----GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344 (390)
T ss_dssp CSSCCEEECCSSC-CCEEECS----SSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEE
T ss_pred cccCCEEECCCCc-CcccCcc----cCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccceeCchhhccCCEE
Confidence 1344445544432 2222211 1235667777777763 34455555555667777777765433323344555555
Q ss_pred eeCCC
Q 047556 957 DIQRC 961 (1175)
Q Consensus 957 ~l~~~ 961 (1175)
+++++
T Consensus 345 ~l~~N 349 (390)
T 3o6n_A 345 TLSHN 349 (390)
T ss_dssp ECCSS
T ss_pred EcCCC
Confidence 55543
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=7.4e-21 Score=215.88 Aligned_cols=302 Identities=16% Similarity=0.183 Sum_probs=192.9
Q ss_pred hcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccc
Q 047556 558 HEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWI 637 (1175)
Q Consensus 558 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i 637 (1175)
.++++++.|.+.++... .++ .+..+++|++|++++|.++.+++ +..+++|++|++++|.+
T Consensus 41 ~~l~~L~~L~l~~~~i~-----------------~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i 100 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-----------------SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI 100 (347)
T ss_dssp HHHTTCSEEECCSSCCC-----------------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred hhcccccEEEEeCCccc-----------------cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcc
Confidence 46677888877654310 011 26789999999999999999884 99999999999999999
Q ss_pred ccccccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCccCCCCCCccccCceeeccCCCccCccc
Q 047556 638 RNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKD 717 (1175)
Q Consensus 638 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~ 717 (1175)
+.+| .+.++++|++|++++| .+..+|. +..+++|++|++++|.....++ .+..+++|+.|++..+.....+ .+..
T Consensus 101 ~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~ 175 (347)
T 4fmz_A 101 TDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT-PIAN 175 (347)
T ss_dssp CCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGG
T ss_pred cCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch-hhcc
Confidence 9986 5999999999999999 6777877 9999999999999997555544 4888888888876665433332 1222
Q ss_pred cccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCC
Q 047556 718 LKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGK 797 (1175)
Q Consensus 718 l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 797 (1175)
+++|+.|+++.+..... ..+..+++|+.|+++++...
T Consensus 176 --------------------------------l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 176 --------------------------------LTDLYSLSLNYNQIEDI-----------SPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp --------------------------------CTTCSEEECTTSCCCCC-----------GGGGGCTTCCEEECCSSCCC
T ss_pred --------------------------------CCCCCEEEccCCccccc-----------ccccCCCccceeecccCCCC
Confidence 23444444443322110 01344667777777777666
Q ss_pred CCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCC
Q 047556 798 RFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLP 877 (1175)
Q Consensus 798 ~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 877 (1175)
.++. +. .+++|+.|++++|.+....+ +..+++|+.|+++++. +..+. .....
T Consensus 213 ~~~~-~~--~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~----------------------~~~~l 264 (347)
T 4fmz_A 213 DITP-VA--NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ-ISDIN----------------------AVKDL 264 (347)
T ss_dssp CCGG-GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCG----------------------GGTTC
T ss_pred CCch-hh--cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc-cCCCh----------------------hHhcC
Confidence 6554 33 37778888888877654332 4455777777777652 22211 11222
Q ss_pred CCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccC-CCCCCCCEE
Q 047556 878 SSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIP-DGLHNVQRI 956 (1175)
Q Consensus 878 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p-~~~~~L~~L 956 (1175)
++|+.|++++|. ++.++ ....+++|+.|++++|......+..+..+++|+.|++++|+.....| ..+++|+.|
T Consensus 265 ~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 338 (347)
T 4fmz_A 265 TKLKMLNVGSNQ-ISDIS-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338 (347)
T ss_dssp TTCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEE
T ss_pred CCcCEEEccCCc-cCCCh-----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhcccee
Confidence 455556655542 22221 12235666777777665444444444455667777776666444333 234555555
Q ss_pred eeCCC
Q 047556 957 DIQRC 961 (1175)
Q Consensus 957 ~l~~~ 961 (1175)
++++|
T Consensus 339 ~l~~N 343 (347)
T 4fmz_A 339 DFANQ 343 (347)
T ss_dssp SSSCC
T ss_pred ehhhh
Confidence 55554
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1e-20 Score=230.62 Aligned_cols=288 Identities=17% Similarity=0.137 Sum_probs=190.2
Q ss_pred hHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchh-hh
Q 047556 592 VFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSK-MR 669 (1175)
Q Consensus 592 ~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~ 669 (1175)
+++..|..+++|++|+|++|.++.+++..|+.+++|++|+|++|.+..+|. .|+++++|++|+|++| .+..+|.. |+
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 144 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFH 144 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhc
Confidence 456678999999999999999999998899999999999999999998865 5799999999999999 67778766 59
Q ss_pred ccCCCceeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcc
Q 047556 670 KLINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYE 749 (1175)
Q Consensus 670 ~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 749 (1175)
++++|++|++++|.+.+..|..++.+++|+.|++..+.....+ +..+++|
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L---------------------------- 194 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSL---------------------------- 194 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTC----------------------------
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhh----------------------------
Confidence 9999999999999966666667999999999987766543322 2333333
Q ss_pred cccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCc
Q 047556 750 NQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTV 829 (1175)
Q Consensus 750 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 829 (1175)
+.|.+..+.. ..+..+++|+.|++++|....+|..+ .++|+.|++++|.+.+. ..+
T Consensus 195 ----~~L~l~~n~l--------------~~l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~--~~l 250 (597)
T 3oja_B 195 ----FHANVSYNLL--------------STLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWL 250 (597)
T ss_dssp ----SEEECCSSCC--------------SEEECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCC--GGG
T ss_pred ----hhhhcccCcc--------------ccccCCchhheeeccCCccccccccc----CCCCCEEECCCCCCCCC--hhh
Confidence 3333332211 11223456777777777766665543 35677777777776542 334
Q ss_pred CCCCCccEEeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcC
Q 047556 830 LWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLK 909 (1175)
Q Consensus 830 ~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~ 909 (1175)
..+++|+.|+|+++. +..+..... .-.++|+.|+++++. +..++. ....+++|+
T Consensus 251 ~~l~~L~~L~Ls~N~-l~~~~~~~~--------------------~~l~~L~~L~Ls~N~-l~~l~~----~~~~l~~L~ 304 (597)
T 3oja_B 251 LNYPGLVEVDLSYNE-LEKIMYHPF--------------------VKMQRLERLYISNNR-LVALNL----YGQPIPTLK 304 (597)
T ss_dssp GGCTTCSEEECCSSC-CCEEESGGG--------------------TTCSSCCEEECTTSC-CCEEEC----SSSCCTTCC
T ss_pred ccCCCCCEEECCCCc-cCCCCHHHh--------------------cCccCCCEEECCCCC-CCCCCc----ccccCCCCc
Confidence 445777777777643 222211100 011344444444432 222221 112356777
Q ss_pred eEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEeeCCC
Q 047556 910 RLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRC 961 (1175)
Q Consensus 910 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~ 961 (1175)
.|++++|.. ..+|..+..+++|+.|++++|......+..+++|+.|+++++
T Consensus 305 ~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 305 VLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp EEECCSSCC-CCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred EEECCCCCC-CccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCC
Confidence 777777743 355655556677777777777654443445566666666554
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=6.8e-20 Score=204.69 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=85.1
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceee
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLD 678 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 678 (1175)
....++.|+|++|.++.+| ..++++++|++|+|++|.+..+|..++++++|++|+|++| .+..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCC-SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcC-hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence 4589999999999999998 6788899999999999999999999999999999999999 6679999999999999999
Q ss_pred ecCccccccCCccCC
Q 047556 679 ITGAYLIKEMPFGMK 693 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~ 693 (1175)
+++|...+.+|..+.
T Consensus 157 L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 157 IRACPELTELPEPLA 171 (328)
T ss_dssp EEEETTCCCCCSCSE
T ss_pred CCCCCCccccChhHh
Confidence 999887888886554
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=3.7e-19 Score=199.97 Aligned_cols=95 Identities=26% Similarity=0.336 Sum_probs=74.5
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
.++++++++++.++.+| ..+. ++|++|+|++|.++.+|. .|.++++|++|+|++|......|..++++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp-~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVP-KDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCC-CSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccC-ccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 37899999999999988 4443 689999999999998866 6899999999999999444444888999999999999
Q ss_pred cCccccccCCccCCCCCCcccc
Q 047556 680 TGAYLIKEMPFGMKELKNLQAL 701 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L 701 (1175)
++|. +..+|..+. ++|+.|
T Consensus 108 s~n~-l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 108 SKNQ-LKELPEKMP--KTLQEL 126 (330)
T ss_dssp CSSC-CSBCCSSCC--TTCCEE
T ss_pred CCCc-CCccChhhc--ccccEE
Confidence 9988 456665443 344444
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=1.3e-18 Score=195.57 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=64.5
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccCchhhhccCCCceeeec
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDIT 680 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 680 (1175)
++++++++++.++.+| ..+. ++|++|+|++|.+..+| ..+.++++|++|+|++|......|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip-~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP-KEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCC-SCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccC-CCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6888888888888888 3443 67888888888888774 468888888888888884334447778888888888888
Q ss_pred CccccccCCcc
Q 047556 681 GAYLIKEMPFG 691 (1175)
Q Consensus 681 ~~~~~~~~p~~ 691 (1175)
+|. +..+|..
T Consensus 111 ~n~-l~~l~~~ 120 (332)
T 2ft3_A 111 KNH-LVEIPPN 120 (332)
T ss_dssp SSC-CCSCCSS
T ss_pred CCc-CCccCcc
Confidence 877 4455543
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.7e-18 Score=194.56 Aligned_cols=275 Identities=16% Similarity=0.170 Sum_probs=188.8
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
++|++|+|++|.++.+++..|.++++|++|+|++|.+..+ |..+.++++|++|+|++| .+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 6899999999999999978899999999999999999988 888999999999999999 6788887665 79999999
Q ss_pred cCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccc
Q 047556 680 TGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQ 759 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 759 (1175)
++|.+....+..+.++++|+.|++..+......
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------------------------------- 161 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----------------------------------------------- 161 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-----------------------------------------------
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccC-----------------------------------------------
Confidence 999854433444777888887765443211100
Q ss_pred cccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEe
Q 047556 760 WGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLE 839 (1175)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~ 839 (1175)
.....+..+++|+.|+++++....+|..+ .++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 162 ---------------~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 162 ---------------IENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp ---------------BCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred ---------------cChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 00012233567888888888888787765 37899999999988777677677778888888
Q ss_pred eccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCC
Q 047556 840 IHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPEL 919 (1175)
Q Consensus 840 L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l 919 (1175)
++++. +..+.. .....+++|+.|++++|. +
T Consensus 223 Ls~n~-l~~~~~------------------------------------------------~~~~~l~~L~~L~L~~N~-l 252 (330)
T 1xku_A 223 LSFNS-ISAVDN------------------------------------------------GSLANTPHLRELHLNNNK-L 252 (330)
T ss_dssp CCSSC-CCEECT------------------------------------------------TTGGGSTTCCEEECCSSC-C
T ss_pred CCCCc-CceeCh------------------------------------------------hhccCCCCCCEEECCCCc-C
Confidence 87742 111110 001125667888888874 4
Q ss_pred CcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCccc--ccCccccCCC
Q 047556 920 TSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKL--EALPNDLHKL 997 (1175)
Q Consensus 920 ~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l--~~lp~~~~~l 997 (1175)
..+|..+..+++|++|++++|+.....+..+.... .......+..|++.+++.. ...|..|..+
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~--------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG--------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS--------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred ccCChhhccCCCcCEEECCCCcCCccChhhcCCcc--------------cccccccccceEeecCcccccccCccccccc
Confidence 57777777788899999988864433222221110 0001124455555555432 2345677888
Q ss_pred CcccEEEeeCC
Q 047556 998 NSLEHLYLQRC 1008 (1175)
Q Consensus 998 ~~L~~L~l~~c 1008 (1175)
.+|+.+++++|
T Consensus 319 ~~l~~l~L~~N 329 (330)
T 1xku_A 319 YVRAAVQLGNY 329 (330)
T ss_dssp CCGGGEEC---
T ss_pred cceeEEEeccc
Confidence 88888888877
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=7.2e-19 Score=197.70 Aligned_cols=275 Identities=17% Similarity=0.174 Sum_probs=182.1
Q ss_pred CCCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchhhhccCCCceee
Q 047556 600 CRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLD 678 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 678 (1175)
.++|++|+|++|.++.+++..|.++++|++|+|++|.++.+ |..++++++|++|+|++| .+..+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEE
Confidence 36899999999999999878999999999999999999987 778999999999999999 7778888766 8999999
Q ss_pred ecCccccccCCc-cCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccc
Q 047556 679 ITGAYLIKEMPF-GMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALS 757 (1175)
Q Consensus 679 l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 757 (1175)
+++|.+ ..+|. .+..+++|+.|++..+.......
T Consensus 130 l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------------------- 164 (332)
T 2ft3_A 130 IHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGF-------------------------------------------- 164 (332)
T ss_dssp CCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGS--------------------------------------------
T ss_pred CCCCcc-CccCHhHhCCCccCCEEECCCCccccCCC--------------------------------------------
Confidence 999984 45554 47888888888665543221000
Q ss_pred cccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccE
Q 047556 758 LQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKM 837 (1175)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 837 (1175)
....+..+ +|+.|+++++....+|..+ .++|+.|++++|.+.+..+..+..+++|+.
T Consensus 165 ------------------~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 165 ------------------EPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp ------------------CTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred ------------------CcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 00111222 4556666666666666654 357888888888877666666666677777
Q ss_pred EeeccCcCcceeccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCC
Q 047556 838 LEIHNCKNLQHLVDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCP 917 (1175)
Q Consensus 838 L~L~~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~ 917 (1175)
|+++++. +..+. + .....+++|+.|++++|.
T Consensus 222 L~L~~N~-l~~~~---------------------------~---------------------~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 222 LGLGHNQ-IRMIE---------------------------N---------------------GSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CBCCSSC-CCCCC---------------------------T---------------------TGGGGCTTCCEEECCSSC
T ss_pred EECCCCc-CCcCC---------------------------h---------------------hHhhCCCCCCEEECCCCc
Confidence 7777642 11110 0 001124567777777774
Q ss_pred CCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCccc--ccCccccC
Q 047556 918 ELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKL--EALPNDLH 995 (1175)
Q Consensus 918 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l--~~lp~~~~ 995 (1175)
+..+|..+..+++|+.|++++|+.....+..+..+. .......++.|++.+++.. ...|..|.
T Consensus 253 -l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 253 -LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG--------------FGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp -CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS--------------CCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred -CeecChhhhcCccCCEEECCCCCCCccChhHccccc--------------cccccccccceEeecCcccccccCccccc
Confidence 446777777778888888888764432222221110 0011234556666665543 34566788
Q ss_pred CCCcccEEEeeCCC
Q 047556 996 KLNSLEHLYLQRCP 1009 (1175)
Q Consensus 996 ~l~~L~~L~l~~c~ 1009 (1175)
.+++|+.|++++|.
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 88888888888873
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=4.6e-18 Score=204.14 Aligned_cols=91 Identities=25% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 600 CRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
..++++|++++|.++.+| ..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|++
T Consensus 39 ~~~l~~L~ls~n~L~~lp-~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLP-DCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHCCCEEECCSSCCSCCC-SCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEE
T ss_pred CCCCcEEEecCCCcCccC-hhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEEC
Confidence 346999999999999998 4454 799999999999999988 6789999999999 6788887 7899999999
Q ss_pred cCccccccCCccCCCCCCccccCce
Q 047556 680 TGAYLIKEMPFGMKELKNLQALSNF 704 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L~~~ 704 (1175)
++|. +..+|. .+++|+.|++.
T Consensus 109 s~N~-l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 109 FSNP-LTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp CSCC-CCCCCC---CCTTCCEEECC
T ss_pred cCCc-CCCCCC---CCCCcCEEECC
Confidence 9998 555664 34555555443
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=5.5e-19 Score=196.17 Aligned_cols=229 Identities=15% Similarity=0.170 Sum_probs=147.2
Q ss_pred HHhhhcCCCccEEEecc-cccccCCCCccCCcccccEEEecccccc-cccccccCcccccEEeccCccccccCchhhhcc
Q 047556 594 SNLLSKCRKLRVLSLSR-SYITELPKGSMSGWKHLRYLNLSHTWIR-NLPKSTCSLINLQILLLRGCYYLLKLPSKMRKL 671 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~-~~i~~l~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 671 (1175)
+..|.++++|++|+|++ |.+.+..+..|+++++|++|+|++|.+. .+|..+.++++|++|+|++|.....+|..++++
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 45678899999999995 7777555578999999999999999998 778889999999999999995555889889999
Q ss_pred CCCceeeecCccccccCCccCCCCC-CccccCceeeccC-CCccCccccccccccccccccCCccCCCChhhcchhhhcc
Q 047556 672 INLRHLDITGAYLIKEMPFGMKELK-NLQALSNFIVGTG-TRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYE 749 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p~~~~~L~-~L~~L~~~~~~~~-~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 749 (1175)
++|++|++++|.+.+.+|..+..++ +|+.|++..+... ..+..+..++ |+.|. +......+. ....+..
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~-------Ls~N~l~~~-~~~~~~~ 219 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD-------LSRNMLEGD-ASVLFGS 219 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE-------CCSSEEEEC-CGGGCCT
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE-------CcCCcccCc-CCHHHhc
Confidence 9999999999997678898888888 8898888776544 2343444443 44443 111111111 1122344
Q ss_pred cccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEeCCCCCCCCCCC
Q 047556 750 NQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGK-RFPSWIGDPSYSKMEVLILENCENCTYLPST 828 (1175)
Q Consensus 750 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~ 828 (1175)
+++|+.|+++.+.... ....+..+++|+.|++++|... .+|.++.. +++|+.|++++|.+.+.+|..
T Consensus 220 l~~L~~L~L~~N~l~~----------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAF----------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp TSCCSEEECCSSEECC----------BGGGCCCCTTCCEEECCSSCCEECCCGGGGG--CTTCCEEECCSSEEEEECCCS
T ss_pred CCCCCEEECCCCceee----------ecCcccccCCCCEEECcCCcccCcCChHHhc--CcCCCEEECcCCcccccCCCC
Confidence 4555555554433210 0111334455555555555544 44544443 555555555555555555544
Q ss_pred cCCCCCccEEeeccCc
Q 047556 829 VLWSSSLKMLEIHNCK 844 (1175)
Q Consensus 829 ~~~~~~L~~L~L~~~~ 844 (1175)
..+++|+.|++++++
T Consensus 288 -~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNK 302 (313)
T ss_dssp -TTGGGSCGGGTCSSS
T ss_pred -ccccccChHHhcCCC
Confidence 233555555555443
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=1.5e-18 Score=193.78 Aligned_cols=204 Identities=24% Similarity=0.328 Sum_probs=149.4
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhc---
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRK--- 670 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~--- 670 (1175)
+..+.++++|++|+|++|.++.+| ..++++++|++|+|++|.+..+|..++++++|++|+|++|..++.+|..++.
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred ChhhhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 334667999999999999999888 7899999999999999999999999999999999999999889999988765
Q ss_pred ------cCCCceeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcch
Q 047556 671 ------LINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASE 744 (1175)
Q Consensus 671 ------L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~ 744 (1175)
+++|++|++++|. +..+|..++++++|+.|++..+.....+..+..+++|
T Consensus 176 ~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L----------------------- 231 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL----------------------- 231 (328)
T ss_dssp CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC-----------------------
T ss_pred hhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC-----------------------
Confidence 9999999999998 5589999999999999988776555444333333333
Q ss_pred hhhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEecc-CCCCCCCCCCCCCCCCccEEEEeCCCCCC
Q 047556 745 EILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGY-GGKRFPSWIGDPSYSKMEVLILENCENCT 823 (1175)
Q Consensus 745 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 823 (1175)
+.|+++.+.... ..+..+..+++|+.|++++| ....+|.++.. +++|+.|++++|.+.+
T Consensus 232 ---------~~L~Ls~n~~~~---------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 232 ---------EELDLRGCTALR---------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR--LTQLEKLDLRGCVNLS 291 (328)
T ss_dssp ---------CEEECTTCTTCC---------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG--CTTCCEEECTTCTTCC
T ss_pred ---------CEEECcCCcchh---------hhHHHhcCCCCCCEEECCCCCchhhcchhhhc--CCCCCEEeCCCCCchh
Confidence 333333221100 01223445566666666664 33445555543 6677777777777666
Q ss_pred CCCCCcCCCCCccEEeecc
Q 047556 824 YLPSTVLWSSSLKMLEIHN 842 (1175)
Q Consensus 824 ~lp~~~~~~~~L~~L~L~~ 842 (1175)
.+|..+..+++|+.+.+..
T Consensus 292 ~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCGGGGGSCTTCEEECCG
T ss_pred hccHHHhhccCceEEeCCH
Confidence 6776666666666666553
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=2.2e-19 Score=220.15 Aligned_cols=382 Identities=14% Similarity=0.101 Sum_probs=180.0
Q ss_pred CcccccEEEeccccccc-ccccccCc--ccccEEeccCccccc--cCchhhhccCCCceeeecCcccccc----CCccCC
Q 047556 623 GWKHLRYLNLSHTWIRN-LPKSTCSL--INLQILLLRGCYYLL--KLPSKMRKLINLRHLDITGAYLIKE----MPFGMK 693 (1175)
Q Consensus 623 ~l~~L~~L~L~~~~i~~-lp~~i~~L--~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~----~p~~~~ 693 (1175)
.+++|++|+|++|.+.. .+..+..+ .+|++|+|++|..+. .++..+.++++|++|++++|.+... ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45666666666665542 23334432 236666666664221 2233334666677777666653222 111122
Q ss_pred CCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHH
Q 047556 694 ELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKE 773 (1175)
Q Consensus 694 ~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 773 (1175)
.+++|+.|++..+.... .........+..+++|+.|.+..+....
T Consensus 190 ~~~~L~~L~L~~n~~~~---------------------------~~~~~l~~~~~~~~~L~~L~L~~~~~~~-------- 234 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAK---------------------------ISPKDLETIARNCRSLVSVKVGDFEILE-------- 234 (592)
T ss_dssp HCCCCCEEECTTCCCSS---------------------------CCHHHHHHHHHHCTTCCEEECSSCBGGG--------
T ss_pred cCCCccEEEeeccCCCc---------------------------cCHHHHHHHHhhCCCCcEEeccCccHHH--------
Confidence 33444444332221110 0011112223445566666554432100
Q ss_pred HHHHhcCCCCCCccEEEEeccCCC----CCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCccee
Q 047556 774 ELVLGMLKPCTNIKKLTINGYGGK----RFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHL 849 (1175)
Q Consensus 774 ~~~~~~l~~~~~L~~L~l~~~~~~----~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l 849 (1175)
....+..+++|+.|.+.++... ..+..+. .+++|+.|.++++. ...+|..+..+++|+.|++++|. +...
T Consensus 235 --l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~-l~~~ 308 (592)
T 3ogk_B 235 --LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV--FPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL-LETE 308 (592)
T ss_dssp --GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC--CCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC-CCHH
T ss_pred --HHHHHhhhhHHHhhcccccccccchHHHHHHhh--ccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc-CCHH
Confidence 1123344678889988764332 1222333 36788888887753 34556666666788888887765 2211
Q ss_pred ccccccccceEEEccCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeec----------CCCC
Q 047556 850 VDENNLQLESLRITSCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRR----------CPEL 919 (1175)
Q Consensus 850 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~----------~~~l 919 (1175)
... ......++|+.|.+.++-.-..+. .....+++|++|++++ |..+
T Consensus 309 ~~~-------------------~~~~~~~~L~~L~L~~~~~~~~l~----~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 309 DHC-------------------TLIQKCPNLEVLETRNVIGDRGLE----VLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp HHH-------------------HHHTTCTTCCEEEEEGGGHHHHHH----HHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred HHH-------------------HHHHhCcCCCEEeccCccCHHHHH----HHHHhCCCCCEEEeecCccccccccccCcc
Confidence 100 000122567777776322111111 1112366788888884 5444
Q ss_pred CcC--CCCCCCcCccceEEeecCCCCCc----cCCCCCCCCEEeeCC---CCCccccccCCCCCCccEEEEccCcccccC
Q 047556 920 TSL--SPGIRLPEALEQLYIWDCQKLES----IPDGLHNVQRIDIQR---CPSLVSLAERGLPITISSVRIWSCEKLEAL 990 (1175)
Q Consensus 920 ~~~--~~~~~~~~~L~~L~l~~~~~l~~----~p~~~~~L~~L~l~~---~~~L~~l~~~~~~~~L~~L~l~~~~~l~~l 990 (1175)
+.. +.....+++|++|+++.+..... +...+++|+.|++++ |+.++..|.. ..+
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-----------------~~~ 428 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-----------------NGV 428 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-----------------HHH
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH-----------------HHH
Confidence 321 11112356677777744433221 112244555555543 2222222110 012
Q ss_pred ccccCCCCcccEEEeeCCCC-CCCCCC---CCCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCcccccc
Q 047556 991 PNDLHKLNSLEHLYLQRCPS-IVRFPE---EGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECF 1066 (1175)
Q Consensus 991 p~~~~~l~~L~~L~l~~c~~-l~~lp~---~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~ 1066 (1175)
+..+.++++|+.|++++|.. ++.... ...+++|+.|++++|..... ..+..+..+++|+.|+|++|.. ....+
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~~L~~L~l~~n~l-~~~~~ 505 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE--GLMEFSRGCPNLQKLEMRGCCF-SERAI 505 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH--HHHHHHTCCTTCCEEEEESCCC-BHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH--HHHHHHhcCcccCeeeccCCCC-cHHHH
Confidence 22345677777777776542 111000 01245677777765443221 2233456677777777777652 11112
Q ss_pred chhhhhccCCCcccceeecCCcCCcc
Q 047556 1067 PDEEMRMMLPTSLCFLNIIGFRNLKK 1092 (1175)
Q Consensus 1067 ~~~~~~~~~~~sL~~L~l~~c~~l~~ 1092 (1175)
+... ...++|++|+|++|+ ++.
T Consensus 506 ~~~~---~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 506 AAAV---TKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHH---HHCSSCCEEEEESCB-CCT
T ss_pred HHHH---HhcCccCeeECcCCc-CCH
Confidence 2211 234567777777754 443
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.7e-16 Score=190.64 Aligned_cols=256 Identities=25% Similarity=0.338 Sum_probs=163.9
Q ss_pred CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEc
Q 047556 784 TNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRIT 863 (1175)
Q Consensus 784 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~ 863 (1175)
.+++.|+++++....+|..+. ++|+.|++++|.+. .+|. .+++|+.|+|+++. ++.++.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~-l~~lp~------------ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ-LTSLPV------------ 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCC-CSCCCC------------
T ss_pred CCCcEEEecCCCcCccChhhC----CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCc-CCcCCC------------
Confidence 368899999999999998663 68999999999875 4555 34888888888753 333221
Q ss_pred cCCccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCC
Q 047556 864 SCDSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKL 943 (1175)
Q Consensus 864 ~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l 943 (1175)
.+++|+.|+++++. ++.++. .+++|+.|++++|. ++.+|.. +++|++|++++|. +
T Consensus 99 ------------~l~~L~~L~Ls~N~-l~~l~~-------~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l 153 (622)
T 3g06_A 99 ------------LPPGLLELSIFSNP-LTHLPA-------LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-L 153 (622)
T ss_dssp ------------CCTTCCEEEECSCC-CCCCCC-------CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-C
T ss_pred ------------CCCCCCEEECcCCc-CCCCCC-------CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-C
Confidence 23566666666542 333221 25678888887774 4556553 3678888888774 4
Q ss_pred CccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCCCCCCc
Q 047556 944 ESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNL 1023 (1175)
Q Consensus 944 ~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L 1023 (1175)
..+|..+++|+.|++++| .++.++ ..+++|+.|++++|. ++.+|. .+++|+.|++++| .++.+|. .+++|
T Consensus 154 ~~l~~~~~~L~~L~L~~N-~l~~l~--~~~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~--~~~~L 223 (622)
T 3g06_A 154 ASLPALPSELCKLWAYNN-QLTSLP--MLPSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPA--LPSGL 223 (622)
T ss_dssp SCCCCCCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCC--CCTTC
T ss_pred CCcCCccCCCCEEECCCC-CCCCCc--ccCCCCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCC--CCCCC
Confidence 456666777777777765 455555 344567777776653 444553 2456777777776 5666654 34667
Q ss_pred ceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCC
Q 047556 1024 VELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTS 1103 (1175)
Q Consensus 1024 ~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~ 1103 (1175)
+.|++++|.+..++ ..+++|+.|++++|. +..+|. .+++|+.|++++ |+++.+| ..+.++++
T Consensus 224 ~~L~Ls~N~L~~lp-------~~l~~L~~L~Ls~N~---L~~lp~------~~~~L~~L~Ls~-N~L~~lp-~~l~~l~~ 285 (622)
T 3g06_A 224 KELIVSGNRLTSLP-------VLPSELKELMVSGNR---LTSLPM------LPSGLLSLSVYR-NQLTRLP-ESLIHLSS 285 (622)
T ss_dssp CEEECCSSCCSCCC-------CCCTTCCEEECCSSC---CSCCCC------CCTTCCEEECCS-SCCCSCC-GGGGGSCT
T ss_pred CEEEccCCccCcCC-------CCCCcCcEEECCCCC---CCcCCc------ccccCcEEeCCC-CCCCcCC-HHHhhccc
Confidence 77777666554432 334667777777654 445554 345677777766 4666666 45666677
Q ss_pred CCceeccCCC
Q 047556 1104 LEFLWIDDCP 1113 (1175)
Q Consensus 1104 L~~L~l~~c~ 1113 (1175)
|+.|+|++|+
T Consensus 286 L~~L~L~~N~ 295 (622)
T 3g06_A 286 ETTVNLEGNP 295 (622)
T ss_dssp TCEEECCSCC
T ss_pred cCEEEecCCC
Confidence 7777777654
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1.8e-18 Score=191.91 Aligned_cols=223 Identities=15% Similarity=0.133 Sum_probs=172.1
Q ss_pred CCccEEEeccccccc---CCCCccCCcccccEEEecc-cccc-cccccccCcccccEEeccCccccccCchhhhccCCCc
Q 047556 601 RKLRVLSLSRSYITE---LPKGSMSGWKHLRYLNLSH-TWIR-NLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLR 675 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~---l~~~~~~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 675 (1175)
.+++.|+|++|.+.+ +| ..|.++++|++|+|++ |.+. .+|..|+++++|++|+|++|...+.+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 589999999999985 56 7999999999999995 8877 7899999999999999999965568999999999999
Q ss_pred eeeecCccccccCCccCCCCCCccccCceeeccC-CCccCccccc-cccccccccccCCccCCCChhhcchhhhcccccc
Q 047556 676 HLDITGAYLIKEMPFGMKELKNLQALSNFIVGTG-TRSSGLKDLK-SLTFLSGELCISRLENVTISREASEEILYENQNL 753 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~-~~~~~l~~l~-~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L 753 (1175)
+|++++|.+.+.+|..+..+++|++|++..+... ..+..+..+. +|+.|. +.+....+... ..+..+. |
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~-------L~~N~l~~~~~-~~~~~l~-L 199 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT-------ISRNRLTGKIP-PTFANLN-L 199 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE-------CCSSEEEEECC-GGGGGCC-C
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE-------CcCCeeeccCC-hHHhCCc-c
Confidence 9999999977789999999999999999888765 4555666666 677665 22222222111 2233444 8
Q ss_pred cccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCC
Q 047556 754 EALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSS 833 (1175)
Q Consensus 754 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~ 833 (1175)
+.|+++.+.... .....+..+++|+.|++++|.....+..+.. +++|+.|++++|.+.+.+|..+..++
T Consensus 200 ~~L~Ls~N~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 200 AFVDLSRNMLEG---------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGL--SKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp SEEECCSSEEEE---------CCGGGCCTTSCCSEEECCSSEECCBGGGCCC--CTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred cEEECcCCcccC---------cCCHHHhcCCCCCEEECCCCceeeecCcccc--cCCCCEEECcCCcccCcCChHHhcCc
Confidence 888876654311 1234567788888888888877655544443 78888899988888878888777778
Q ss_pred CccEEeeccCc
Q 047556 834 SLKMLEIHNCK 844 (1175)
Q Consensus 834 ~L~~L~L~~~~ 844 (1175)
+|+.|+++++.
T Consensus 269 ~L~~L~Ls~N~ 279 (313)
T 1ogq_A 269 FLHSLNVSFNN 279 (313)
T ss_dssp TCCEEECCSSE
T ss_pred CCCEEECcCCc
Confidence 88888888754
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=9.6e-19 Score=214.44 Aligned_cols=211 Identities=15% Similarity=0.071 Sum_probs=134.8
Q ss_pred hHHHhhhcCCCccEEEecccccccCCCCccCCc--ccccEEEecccc-cc--cccccccCcccccEEeccCcccccc---
Q 047556 592 VFSNLLSKCRKLRVLSLSRSYITELPKGSMSGW--KHLRYLNLSHTW-IR--NLPKSTCSLINLQILLLRGCYYLLK--- 663 (1175)
Q Consensus 592 ~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l--~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~--- 663 (1175)
.+...+..+++|++|+|++|.++......+..+ .+|++|+|++|. +. .++..+.++++|++|+|++|.....
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH
T ss_pred HHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh
Confidence 345556689999999999998765443445553 459999999876 22 3445556889999999999954333
Q ss_pred -CchhhhccCCCceeeecCcccc----ccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCC
Q 047556 664 -LPSKMRKLINLRHLDITGAYLI----KEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTI 738 (1175)
Q Consensus 664 -lp~~i~~L~~L~~L~l~~~~~~----~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~ 738 (1175)
++..+..+++|++|++++|.+. ..++..+.++++|+.|++..+.....+..
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~------------------------ 238 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF------------------------ 238 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH------------------------
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH------------------------
Confidence 4555678899999999998843 23333445667777776655433322222
Q ss_pred hhhcchhhhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeC
Q 047556 739 SREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILEN 818 (1175)
Q Consensus 739 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~ 818 (1175)
+..+++|+.|.+...... .. .......+..+++|+.|.+.++....+|..+.. +++|++|++++
T Consensus 239 --------~~~~~~L~~L~l~~~~~~-~~-----~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~--~~~L~~L~Ls~ 302 (592)
T 3ogk_B 239 --------FKAAANLEEFCGGSLNED-IG-----MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF--AAQIRKLDLLY 302 (592)
T ss_dssp --------HHHCTTCCEEEECBCCCC-TT-----CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGG--GGGCCEEEETT
T ss_pred --------HhhhhHHHhhcccccccc-cc-----hHHHHHHhhccccccccCccccchhHHHHHHhh--cCCCcEEecCC
Confidence 333444555544321100 00 001123456678888888887766667766654 78899999999
Q ss_pred CCCCCC-CCCCcCCCCCccEEeecc
Q 047556 819 CENCTY-LPSTVLWSSSLKMLEIHN 842 (1175)
Q Consensus 819 ~~~~~~-lp~~~~~~~~L~~L~L~~ 842 (1175)
|.+... ++..+..+++|+.|++++
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccC
Confidence 885432 223345568899988874
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=2.3e-16 Score=185.32 Aligned_cols=175 Identities=24% Similarity=0.293 Sum_probs=128.6
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccCchh-hhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 678 (1175)
++|++|+|++|.++.+++..|.++++|++|+|++|.|..++ ..|.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 57899999999998888788999999999999999988775 67888999999999998 56666544 78899999999
Q ss_pred ecCccccccCC-ccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccc
Q 047556 679 ITGAYLIKEMP-FGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALS 757 (1175)
Q Consensus 679 l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 757 (1175)
+++|.+ ..+| ..+.++++|+.|++..+ ..+..+.
T Consensus 154 L~~N~l-~~~~~~~~~~l~~L~~L~l~~~------------~~l~~i~-------------------------------- 188 (452)
T 3zyi_A 154 LRNNPI-ESIPSYAFNRVPSLMRLDLGEL------------KKLEYIS-------------------------------- 188 (452)
T ss_dssp CCSCCC-CEECTTTTTTCTTCCEEECCCC------------TTCCEEC--------------------------------
T ss_pred CCCCCc-ceeCHhHHhcCCcccEEeCCCC------------CCccccC--------------------------------
Confidence 999884 4444 35777777777744321 1111110
Q ss_pred cccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccE
Q 047556 758 LQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKM 837 (1175)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 837 (1175)
...+..+++|+.|++++|....+|. +. .+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 189 -------------------~~~~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 189 -------------------EGAFEGLFNLKYLNLGMCNIKDMPN-LT--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp -------------------TTTTTTCTTCCEEECTTSCCSSCCC-CT--TCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred -------------------hhhccCCCCCCEEECCCCccccccc-cc--ccccccEEECcCCcCcccCcccccCccCCCE
Confidence 1123446678888888887777765 33 3788888888888887777777777778888
Q ss_pred EeeccC
Q 047556 838 LEIHNC 843 (1175)
Q Consensus 838 L~L~~~ 843 (1175)
|+++++
T Consensus 247 L~L~~n 252 (452)
T 3zyi_A 247 LWVMNS 252 (452)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 877764
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=183.32 Aligned_cols=176 Identities=20% Similarity=0.250 Sum_probs=129.9
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccCch-hhhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLPS-KMRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 678 (1175)
+++++|+|++|.++.+++..|.++++|++|+|++|.|..++ ..|.++++|++|+|++| .+..+|. .|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 57889999999999888888999999999999999988775 56888999999999998 6666665 588899999999
Q ss_pred ecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccc
Q 047556 679 ITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSL 758 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 758 (1175)
+++|.+....+..+.++++|+.|++..+. .+..+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~------------~l~~i---------------------------------- 176 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELK------------RLSYI---------------------------------- 176 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCT------------TCCEE----------------------------------
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCC------------Cccee----------------------------------
Confidence 99988443333457777777777543211 11100
Q ss_pred ccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEE
Q 047556 759 QWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKML 838 (1175)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L 838 (1175)
....+..+++|+.|++++|....+|. +. .+++|+.|+|++|.+.+..|..+..+++|+.|
T Consensus 177 -----------------~~~~~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 177 -----------------SEGAFEGLSNLRYLNLAMCNLREIPN-LT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236 (440)
T ss_dssp -----------------CTTTTTTCSSCCEEECTTSCCSSCCC-CT--TCSSCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred -----------------CcchhhcccccCeecCCCCcCccccc-cC--CCcccCEEECCCCccCccChhhhccCccCCEE
Confidence 01124446778888888888877775 33 37888888888888877777777777888888
Q ss_pred eeccC
Q 047556 839 EIHNC 843 (1175)
Q Consensus 839 ~L~~~ 843 (1175)
+++++
T Consensus 237 ~L~~n 241 (440)
T 3zyj_A 237 WMIQS 241 (440)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 88763
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=8.4e-17 Score=182.52 Aligned_cols=104 Identities=27% Similarity=0.269 Sum_probs=76.8
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchh-hhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 678 (1175)
++|++|+|++|.++.+++..|.++++|++|+|++|.++.+ |..+.++++|++|+|++| .+..+|.. ++++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 4788888888888887766788888888888888888776 445788888888888887 56666655 77788888888
Q ss_pred ecCccccccCCc--cCCCCCCccccCceee
Q 047556 679 ITGAYLIKEMPF--GMKELKNLQALSNFIV 706 (1175)
Q Consensus 679 l~~~~~~~~~p~--~~~~L~~L~~L~~~~~ 706 (1175)
+++|. +..+|. .+..+++|+.|++..+
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCC
Confidence 88877 445665 4666777777655543
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=5.2e-17 Score=180.29 Aligned_cols=223 Identities=20% Similarity=0.184 Sum_probs=122.7
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccc---cccccCcccccEEeccCccccccCchhhhccCCCcee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL---PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHL 677 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 677 (1175)
++|++|+|++|.++.+|+..|.++++|++|+|++|.+..+ |..+..+++|++|+|++| .+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 4677777777777777755667777777777777776644 556666777777777777 555666667777777777
Q ss_pred eecCccccccCC--ccCCCCCCccccCceeeccCCC-ccCccccccccccccccccCCccCCCChhhcchhhhccccccc
Q 047556 678 DITGAYLIKEMP--FGMKELKNLQALSNFIVGTGTR-SSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLE 754 (1175)
Q Consensus 678 ~l~~~~~~~~~p--~~~~~L~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 754 (1175)
++++|. +..++ ..+..+++|+.|++..+..... +..+..+++|+.|. +.+....+......+..+++|+
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-------MAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE-------CTTCEEGGGEECSCCTTCTTCC
T ss_pred ECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE-------CCCCccccccchhHHhhCcCCC
Confidence 777776 33343 3566677777766655443321 11233444444443 1111111111112233444555
Q ss_pred ccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEeCCCCCCCCCCCcCCC-
Q 047556 755 ALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSW-IGDPSYSKMEVLILENCENCTYLPSTVLWS- 832 (1175)
Q Consensus 755 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~- 832 (1175)
.|+++.+.... .....+..+++|+.|++++|....++.. +. .+++|+.|++++|.+.+..|..+..+
T Consensus 179 ~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 179 FLDLSQCQLEQ---------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp EEECTTSCCCE---------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGT--TCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred EEECCCCCcCC---------cCHHHhcCCCCCCEEECCCCccCccChhhcc--CcccCCEeECCCCCCcccCHHHHHhhh
Confidence 55554432211 0122344455666666666655555442 22 25666666666666655555544444
Q ss_pred CCccEEeeccC
Q 047556 833 SSLKMLEIHNC 843 (1175)
Q Consensus 833 ~~L~~L~L~~~ 843 (1175)
++|+.|+++++
T Consensus 248 ~~L~~L~L~~N 258 (306)
T 2z66_A 248 SSLAFLNLTQN 258 (306)
T ss_dssp TTCCEEECTTC
T ss_pred ccCCEEEccCC
Confidence 25666666553
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=1e-15 Score=179.05 Aligned_cols=241 Identities=17% Similarity=0.221 Sum_probs=160.3
Q ss_pred ccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccC
Q 047556 786 IKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC 865 (1175)
Q Consensus 786 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c 865 (1175)
...++..+.....+|..+ .++++.|+|++|.+....+..+..+++|+.|+|+++. +..+..
T Consensus 45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~-------------- 105 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEI-------------- 105 (440)
T ss_dssp SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECG--------------
T ss_pred CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccCh--------------
Confidence 456777777778888766 3678899999988877766777777888888887742 211110
Q ss_pred CccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCC-CCCCcCccceEEeecCCCCC
Q 047556 866 DSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSP-GIRLPEALEQLYIWDCQKLE 944 (1175)
Q Consensus 866 ~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~ 944 (1175)
.....+++|++|++++|.. +.++. .+..+++|++|++++|....
T Consensus 106 ----------------------------------~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 106 ----------------------------------GAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp ----------------------------------GGGTTCSSCCEEECCSSCC-SSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred ----------------------------------hhccCCccCCEEECCCCcC-CeeCHhHhhccccCceeeCCCCcccc
Confidence 0111255677777777743 34433 46677788888888876433
Q ss_pred ccCC---CCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCcc-ccCCCCcccEEEeeCCCCCCCCCCCCCC
Q 047556 945 SIPD---GLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPN-DLHKLNSLEHLYLQRCPSIVRFPEEGFP 1020 (1175)
Q Consensus 945 ~~p~---~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 1020 (1175)
..+. .+++|+.|++++|. .+..++. .|.++++|++|++++| .++.+|....+
T Consensus 151 ~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l 206 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGELK-----------------------RLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPL 206 (440)
T ss_dssp ECTTTTTTCTTCCEEECCCCT-----------------------TCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTC
T ss_pred cCHHHhhhCcccCEeCCCCCC-----------------------CcceeCcchhhcccccCeecCCCC-cCccccccCCC
Confidence 2222 23445555444443 3333333 4677788888888887 67777766666
Q ss_pred CCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCC
Q 047556 1021 NNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQS 1100 (1175)
Q Consensus 1021 ~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~ 1100 (1175)
++|+.|++++|.+..+ .+..|.++++|+.|++++|. +..++...+ ..+++|+.|+|++ |+++.++...+..
T Consensus 207 ~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAI---RPGSFQGLMHLQKLWMIQSQ---IQVIERNAF--DNLQSLVEINLAH-NNLTLLPHDLFTP 277 (440)
T ss_dssp SSCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTCC---CCEECTTSS--TTCTTCCEEECTT-SCCCCCCTTTTSS
T ss_pred cccCEEECCCCccCcc---ChhhhccCccCCEEECCCCc---eeEEChhhh--cCCCCCCEEECCC-CCCCccChhHhcc
Confidence 7888888876655443 24567888888888888876 445554433 3457888888888 6888888777888
Q ss_pred CCCCCceeccCCC
Q 047556 1101 LTSLEFLWIDDCP 1113 (1175)
Q Consensus 1101 l~~L~~L~l~~c~ 1113 (1175)
+++|+.|+|++||
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 8888888888755
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=1.3e-15 Score=178.91 Aligned_cols=241 Identities=22% Similarity=0.244 Sum_probs=164.8
Q ss_pred ccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccC
Q 047556 786 IKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSC 865 (1175)
Q Consensus 786 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c 865 (1175)
...++..+.....+|..+ .++++.|+|++|.+.+..|..+..+++|+.|+|+++. +..+..
T Consensus 56 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-------------- 116 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEV-------------- 116 (452)
T ss_dssp SCEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT--------------
T ss_pred CcEEEECCCCcCccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcCh--------------
Confidence 456666666777777655 3578888888888877767777777888888887642 111110
Q ss_pred CccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCc
Q 047556 866 DSLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLES 945 (1175)
Q Consensus 866 ~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~ 945 (1175)
.....+++|++|++++|......+..+..+++|++|++++|... .
T Consensus 117 ----------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 161 (452)
T 3zyi_A 117 ----------------------------------GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-S 161 (452)
T ss_dssp ----------------------------------TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-E
T ss_pred ----------------------------------hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-e
Confidence 01112556777777777543333334566778888888887643 3
Q ss_pred cCC----CCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCcc-ccCCCCcccEEEeeCCCCCCCCCCCCCC
Q 047556 946 IPD----GLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPN-DLHKLNSLEHLYLQRCPSIVRFPEEGFP 1020 (1175)
Q Consensus 946 ~p~----~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 1020 (1175)
+|. .+++|+.|++++| +.++.++. .|..+++|++|++++| .++.+|....+
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~-----------------------~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l 217 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGEL-----------------------KKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPL 217 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCC-----------------------TTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTC
T ss_pred eCHhHHhcCCcccEEeCCCC-----------------------CCccccChhhccCCCCCCEEECCCC-ccccccccccc
Confidence 332 2344445544444 44444443 4678888999999988 77778776677
Q ss_pred CCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCC
Q 047556 1021 NNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQS 1100 (1175)
Q Consensus 1021 ~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~ 1100 (1175)
++|+.|++++|....+ .+..|.++++|+.|++++|. +..++...+ ..+++|+.|+|++ |+++.++...+..
T Consensus 218 ~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEI---RPGSFHGLSSLKKLWVMNSQ---VSLIERNAF--DGLASLVELNLAH-NNLSSLPHDLFTP 288 (452)
T ss_dssp TTCCEEECTTSCCSEE---CGGGGTTCTTCCEEECTTSC---CCEECTTTT--TTCTTCCEEECCS-SCCSCCCTTSSTT
T ss_pred ccccEEECcCCcCccc---CcccccCccCCCEEEeCCCc---CceECHHHh--cCCCCCCEEECCC-CcCCccChHHhcc
Confidence 8888888887765544 35578889999999999976 555554443 4567899999998 6889998788889
Q ss_pred CCCCCceeccCCC
Q 047556 1101 LTSLEFLWIDDCP 1113 (1175)
Q Consensus 1101 l~~L~~L~l~~c~ 1113 (1175)
+++|+.|+|++|+
T Consensus 289 l~~L~~L~L~~Np 301 (452)
T 3zyi_A 289 LRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEccCCC
Confidence 9999999999865
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.9e-19 Score=213.27 Aligned_cols=91 Identities=24% Similarity=0.331 Sum_probs=58.9
Q ss_pred HHHhhhcCCCccEEEeccccccc-----CCCCccCCcccccEEEecccccccc-cccc-cCcc----cccEEeccCcccc
Q 047556 593 FSNLLSKCRKLRVLSLSRSYITE-----LPKGSMSGWKHLRYLNLSHTWIRNL-PKST-CSLI----NLQILLLRGCYYL 661 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~~i~~-----l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i-~~L~----~L~~L~L~~~~~l 661 (1175)
....+..+++|++|+|++|.++. ++ ..+..+++|++|+|++|.+... +..+ ..+. +|++|+|++|...
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 44456777778888887777663 33 4566667777888877776642 2222 2344 5777777777322
Q ss_pred ----ccCchhhhccCCCceeeecCccc
Q 047556 662 ----LKLPSKMRKLINLRHLDITGAYL 684 (1175)
Q Consensus 662 ----~~lp~~i~~L~~L~~L~l~~~~~ 684 (1175)
..+|..+.++++|++|++++|.+
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred HHHHHHHHHHHccCCceeEEECCCCcC
Confidence 14566777777777777777764
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=1.5e-18 Score=205.45 Aligned_cols=160 Identities=13% Similarity=0.088 Sum_probs=109.9
Q ss_pred cceeEEEeeccCCCcchhhHhhhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEeccccccc
Q 047556 536 QKSRHFSYDCSVNDGNSMLEVMHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITE 615 (1175)
Q Consensus 536 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~ 615 (1175)
...+++.+.+...........+..+++|++|.+.++... ......++..+..+++|++|+|++|.+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~------------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT------------EARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCC------------HHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCC------------HHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 345677776654443333444788999999988765410 01123456778899999999999998876
Q ss_pred CCCCcc-CCcc----cccEEEecccccc-----cccccccCcccccEEeccCccccccCchhhhc-----cCCCceeeec
Q 047556 616 LPKGSM-SGWK----HLRYLNLSHTWIR-----NLPKSTCSLINLQILLLRGCYYLLKLPSKMRK-----LINLRHLDIT 680 (1175)
Q Consensus 616 l~~~~~-~~l~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~-----L~~L~~L~l~ 680 (1175)
.....+ ..+. +|++|+|++|.+. .+|..+.++++|++|+|++|......+..+.. .++|++|+++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 322222 3344 6999999999988 56888999999999999999533333333332 5679999999
Q ss_pred Ccccccc----CCccCCCCCCccccCceeec
Q 047556 681 GAYLIKE----MPFGMKELKNLQALSNFIVG 707 (1175)
Q Consensus 681 ~~~~~~~----~p~~~~~L~~L~~L~~~~~~ 707 (1175)
+|.+... ++..+..+++|+.|++..+.
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 9985442 34455667788887766554
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=4.8e-16 Score=172.50 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=83.4
Q ss_pred cEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccC---chhhhccCCCceeee
Q 047556 604 RVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKL---PSKMRKLINLRHLDI 679 (1175)
Q Consensus 604 r~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~l 679 (1175)
+.++++++.++.+|. .+. ++|++|+|++|.++.+|.. +.++++|++|+|++| .+..+ |..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~-~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCS-CCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCC-CCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEEC
Confidence 578999999999994 333 6899999999999999876 689999999999999 55444 677889999999999
Q ss_pred cCccccccCCccCCCCCCccccCceeec
Q 047556 680 TGAYLIKEMPFGMKELKNLQALSNFIVG 707 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~ 707 (1175)
++|. +..+|..+..+++|+.|++..+.
T Consensus 86 s~n~-i~~l~~~~~~l~~L~~L~l~~n~ 112 (306)
T 2z66_A 86 SFNG-VITMSSNFLGLEQLEHLDFQHSN 112 (306)
T ss_dssp CSCS-EEEEEEEEETCTTCCEEECTTSE
T ss_pred CCCc-cccChhhcCCCCCCCEEECCCCc
Confidence 9998 56788788888999988766553
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=179.38 Aligned_cols=232 Identities=20% Similarity=0.165 Sum_probs=149.4
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCch--hhhc
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPS--KMRK 670 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--~i~~ 670 (1175)
+..|.++++|++|+|++|.++.+++..|.++++|++|+|++|.++.+|.. ++++++|++|+|++| .+..+|. .+.+
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~ 147 (353)
T 2z80_A 69 NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSH 147 (353)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTT
T ss_pred HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhcc
Confidence 34678899999999999999999878899999999999999999999876 899999999999999 6778876 6889
Q ss_pred cCCCceeeecCccccccC-CccCCCCCCccccCceeeccCCC-ccCccccccccccccccccCCccCCCChhhcchhhhc
Q 047556 671 LINLRHLDITGAYLIKEM-PFGMKELKNLQALSNFIVGTGTR-SSGLKDLKSLTFLSGELCISRLENVTISREASEEILY 748 (1175)
Q Consensus 671 L~~L~~L~l~~~~~~~~~-p~~~~~L~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 748 (1175)
+++|++|++++|..+..+ |..++.+++|+.|++..+..... +..+..+++|+.|.. ...... ......+.
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l-------~~n~l~-~~~~~~~~ 219 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL-------HMKQHI-LLLEIFVD 219 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE-------ECSCST-THHHHHHH
T ss_pred CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC-------CCCccc-cchhhhhh
Confidence 999999999998544544 56789999999998887765543 445666666666541 111111 11122233
Q ss_pred ccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCC-----CCCCCCCCCCCCCccEEEEeCCCCCC
Q 047556 749 ENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGK-----RFPSWIGDPSYSKMEVLILENCENCT 823 (1175)
Q Consensus 749 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~~~~~~ 823 (1175)
.+++|+.|+++.+......... .......+.++.+++.++... .+|.++.. +++|+.|++++|.+.
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~--l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSE------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQLK- 290 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------------CCCCCCEEEEESCBCCHHHHHHHHHHHHT--CTTCCEEECCSSCCC-
T ss_pred hcccccEEECCCCccccccccc------cccccccchhhccccccccccCcchhhhHHHHhc--ccCCCEEECCCCCCC-
Confidence 4556666666554331111000 011122344555555444322 23333332 566666666666654
Q ss_pred CCCCC-cCCCCCccEEeeccC
Q 047556 824 YLPST-VLWSSSLKMLEIHNC 843 (1175)
Q Consensus 824 ~lp~~-~~~~~~L~~L~L~~~ 843 (1175)
.+|.. +..+++|+.|+++++
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSS
T ss_pred ccCHHHHhcCCCCCEEEeeCC
Confidence 33332 344566666666654
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=3.2e-17 Score=201.09 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=44.0
Q ss_pred hhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEE-EEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCC
Q 047556 746 ILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKL-TINGYGGKRFPSWIGDPSYSKMEVLILENCENCTY 824 (1175)
Q Consensus 746 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L-~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 824 (1175)
.+..+++|+.|.+..... ....+. -......+..+++|+.| .+.+.....+|..+. .+++|+.|++++|.+...
T Consensus 230 ~~~~~~~L~~L~l~~~~~-~~~~~~--~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTA-EVRPDV--YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHCTTCSEEECSBCCC-CCCHHH--HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCHH
T ss_pred HHhcCCcceEcccccccC-ccchhh--HHHHHHHHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCHH
Confidence 344556666666543221 011111 11122345667777777 233322222333222 256777777777764321
Q ss_pred -CCCCcCCCCCccEEeeccC
Q 047556 825 -LPSTVLWSSSLKMLEIHNC 843 (1175)
Q Consensus 825 -lp~~~~~~~~L~~L~L~~~ 843 (1175)
++.....+++|+.|++++|
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHhcCCCcCEEeCcCc
Confidence 2222334467777777665
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=8.9e-16 Score=168.28 Aligned_cols=202 Identities=17% Similarity=0.141 Sum_probs=140.5
Q ss_pred CCCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccC-chhhhccCCCcee
Q 047556 600 CRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKL-PSKMRKLINLRHL 677 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 677 (1175)
.++|+.|+|++|.++.+++..|..+++|++|+|++|.+..+ |..+.++++|++|+|++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 46899999999999999878899999999999999999877 778999999999999999646666 6778999999999
Q ss_pred eecCccccccCCccCCCCCCccccCceeeccCCCccC-ccccccccccccccccCCccCCCChhhcchhhhccccccccc
Q 047556 678 DITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSG-LKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEAL 756 (1175)
Q Consensus 678 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~-l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 756 (1175)
++++|.+....|..+..+++|+.|++..+.....+.. +..+ ++|+.|
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------------------~~L~~L 158 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL--------------------------------GNLTHL 158 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------------------------------TTCCEE
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC--------------------------------CCccEE
Confidence 9999986555566788888888887766544332211 2222 333333
Q ss_pred ccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCc
Q 047556 757 SLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRF-PSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSL 835 (1175)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 835 (1175)
+++.+.... .....+..+++|+.|++++|....+ |.++.. +++|+.|++++|.+.+..+..+..+++|
T Consensus 159 ~l~~n~l~~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 159 FLHGNRISS---------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp ECCSSCCCE---------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred ECCCCcccc---------cCHHHhcCccccCEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHHHcccCccc
Confidence 333322100 0112244566777777777766555 445543 6777777777777765444445555777
Q ss_pred cEEeeccCc
Q 047556 836 KMLEIHNCK 844 (1175)
Q Consensus 836 ~~L~L~~~~ 844 (1175)
+.|++++++
T Consensus 228 ~~L~l~~N~ 236 (285)
T 1ozn_A 228 QYLRLNDNP 236 (285)
T ss_dssp CEEECCSSC
T ss_pred CEEeccCCC
Confidence 777777643
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=3.8e-16 Score=173.83 Aligned_cols=222 Identities=15% Similarity=0.150 Sum_probs=133.7
Q ss_pred hHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhcc
Q 047556 592 VFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKL 671 (1175)
Q Consensus 592 ~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 671 (1175)
.+...+..+++|+.|+|++|.++.+++..|.++++|++|+|++|.+..++. +..+++|++|+|++| .+..+| ..
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~ 98 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VG 98 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----EC
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CC
Confidence 445666778899999999999998887788999999999999999887765 889999999999998 566655 34
Q ss_pred CCCceeeecCccccccCCccCCCCCCccccCceeeccCCCc-cCccccccccccccccccCCccCCCChhhcchhhhccc
Q 047556 672 INLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRS-SGLKDLKSLTFLSGELCISRLENVTISREASEEILYEN 750 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~-~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 750 (1175)
++|++|++++|.+. .++.. .+++|+.|++..+.....+ ..+..+++|+.|+ +................+
T Consensus 99 ~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~-------Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 99 PSIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD-------LKLNEIDTVNFAELAASS 168 (317)
T ss_dssp TTCCEEECCSSCCS-EEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE-------CTTSCCCEEEGGGGGGGT
T ss_pred CCcCEEECCCCccC-CcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEE-------CCCCCCCcccHHHHhhcc
Confidence 88999999998843 34322 3577888877776655432 2344555555554 222222222222222334
Q ss_pred ccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcC
Q 047556 751 QNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVL 830 (1175)
Q Consensus 751 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 830 (1175)
++|+.|+++.+..... .....+++|+.|++++|....+|..+.. +++|+.|++++|.+. .+|..+.
T Consensus 169 ~~L~~L~L~~N~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV-----------KGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp TTCCEEECTTSCCCEE-----------ECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECTTSCCC-EECTTCC
T ss_pred CcCCEEECCCCcCccc-----------ccccccccCCEEECCCCcCCcchhhhcc--cCcccEEECcCCccc-chhhHhh
Confidence 4555555544332110 1112244555555555555555444332 455555555555543 2343344
Q ss_pred CCCCccEEeeccC
Q 047556 831 WSSSLKMLEIHNC 843 (1175)
Q Consensus 831 ~~~~L~~L~L~~~ 843 (1175)
.+++|+.|+++++
T Consensus 235 ~l~~L~~L~l~~N 247 (317)
T 3o53_A 235 FSQNLEHFDLRGN 247 (317)
T ss_dssp CCTTCCEEECTTC
T ss_pred cCCCCCEEEccCC
Confidence 4455555555543
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=5.5e-17 Score=180.63 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=62.7
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
..++.++++.+.+...+...+..+++|++|+|++|.+..++ ..+.++++|++|+|++| .+..++. +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEEC
Confidence 35666777777776666556667788999999999888775 57888999999999988 4544444 888888999998
Q ss_pred cCcc
Q 047556 680 TGAY 683 (1175)
Q Consensus 680 ~~~~ 683 (1175)
++|.
T Consensus 88 s~n~ 91 (317)
T 3o53_A 88 NNNY 91 (317)
T ss_dssp CSSE
T ss_pred cCCc
Confidence 8887
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=2.4e-16 Score=175.01 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=34.3
Q ss_pred CCccEEEEeccCCCCCC-CCCCCCCCCCccEEEEeCCCCCCC--CCCCc--CCCCCccEEeeccC
Q 047556 784 TNIKKLTINGYGGKRFP-SWIGDPSYSKMEVLILENCENCTY--LPSTV--LWSSSLKMLEIHNC 843 (1175)
Q Consensus 784 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~--lp~~~--~~~~~L~~L~L~~~ 843 (1175)
++|+.|++++|....++ ..+.. +++|+.|++++|.+.+. +|..+ ..+++|+.|+++++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRV--FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCC--CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCcEEEeeCCCCccchHHHhcc--CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 56777777777766666 34443 77777777777775443 11111 33456666666553
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=5e-15 Score=157.47 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=138.5
Q ss_pred CcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCC-CCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCc
Q 047556 907 TLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPD-GLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCE 985 (1175)
Q Consensus 907 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~-~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~ 985 (1175)
+|+.|++++|......+..+..+++|++|++++|..++.++. .+ ...++|++|++++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f--------------------~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF--------------------YNLSKVTHIEIRNTR 91 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE--------------------ESCTTCCEEEEEEET
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc--------------------CCCcCCcEEECCCCC
Confidence 566666666643332233445556666666666653433332 11 011355666666644
Q ss_pred ccccCc-cccCCCCcccEEEeeCCCCCCCCCCCCCCCCcc---eEEEecc-CccchhhhhhhccCCCCCCC-eeEeccCC
Q 047556 986 KLEALP-NDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNLV---ELKIRGV-DVKMYKAAIQWGLHRLTSLR-RLWIEGCD 1059 (1175)
Q Consensus 986 ~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~---~L~l~~~-~~~~l~~~~~~~l~~l~~L~-~L~l~~c~ 1059 (1175)
.++.+| ..|.++++|++|++++| .++.+|....+++|+ +|++++| ....+. +..|.++++|+ .|++++|.
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~---~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIP---VNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC---TTTTTTTBSSEEEEECCSCC
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcC---cccccchhcceeEEEcCCCC
Confidence 555554 45778889999999988 677777655566777 8888876 554443 44588899999 99999976
Q ss_pred CccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCC-CCCCceeccCCCCCCcCCCCCCCCCcceeeeccCchh
Q 047556 1060 DDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSL-TSLEFLWIDDCPNLKSFPEVGLPSSILWLNIWSCPML 1138 (1175)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l-~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~cp~L 1138 (1175)
+..+|...+. . ++|+.|++++|..++.++...+.++ ++|+.|++++ +.++.+|.. .+++|+.|++++++.|
T Consensus 168 ---l~~i~~~~~~--~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 168 ---FTSVQGYAFN--G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp ---CCEECTTTTT--T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred ---CcccCHhhcC--C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 6677776542 2 7999999999656999988889999 9999999999 678889875 5679999999998764
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=2.5e-15 Score=164.63 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=78.8
Q ss_pred ccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccCchhhhccCCCceeeecC
Q 047556 603 LRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITG 681 (1175)
Q Consensus 603 Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 681 (1175)
-++++.+++.++.+|. .+ .++|++|+|++|.++.+| ..+.++++|++|+|++|......|..+..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPV-GI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSSCCT-TC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcccCCc-CC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 3789999999999983 33 469999999999999887 4689999999999999944444478899999999999999
Q ss_pred ccccccC-CccCCCCCCccccCcee
Q 047556 682 AYLIKEM-PFGMKELKNLQALSNFI 705 (1175)
Q Consensus 682 ~~~~~~~-p~~~~~L~~L~~L~~~~ 705 (1175)
|..+..+ |..+..+++|+.|++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~ 114 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDR 114 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCccccCHHHhcCCcCCCEEECCC
Confidence 9734444 55667777777665443
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=4.4e-15 Score=172.65 Aligned_cols=314 Identities=11% Similarity=0.016 Sum_probs=185.5
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCcEEEEE--EccCCChHHHHHHHHhccccccc--ccc-ceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMV-SANSPSGHANIAVIPI--VGMGGIGKTTLAREVYNDKEVET--FKF-DIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~s~~~~~~ 255 (1175)
..++||+.+++++.+.+ .....+.....+.+.| +|++|+||||||+++++...... ..+ ..++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999999988 4311100012256666 99999999999999998643210 011 235788877778889
Q ss_pred HHHHHHHHHhcCCCCC-ccchHHHHHHHHHHhc--CccEEEEEecCccCC------cccHHHHhcccCCC---C--CCcE
Q 047556 256 SISRAILESITYSSCD-LKALNEVQVQLKKAVD--GKKIFLVLDDVWNED------YGLWEDLKAPLMGA---A--PNSK 321 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs~ 321 (1175)
.++..++.+++...+. ..+.+.....+.+.+. +++++||+||+|.-. .+.+..+...+... + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999998765332 2234455556666654 779999999997621 23344333333211 2 3455
Q ss_pred EEEecCChhhhhhc--------C-CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcC------Cch
Q 047556 322 IVVTTRHSHVASTM--------E-PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCR------GLP 386 (1175)
Q Consensus 322 iivTtr~~~v~~~~--------~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~------glP 386 (1175)
||+||+...+...+ . ....+.+.+++.++++++|...+...... .....+....|++.|+ |.|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCcH
Confidence 88888765532111 1 11239999999999999997654211110 1112345677889999 999
Q ss_pred HHHHHHHHHh-c-----CC---CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhhhhhhhhccCC--CCcccChh
Q 047556 387 LAAKALGGLL-R-----SK---RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLKRCFSYCAIFP--KDYDFEEK 455 (1175)
Q Consensus 387 lai~~~~~~l-~-----~~---~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~i~~~ 455 (1175)
..+..+.... . .. +.+.+..+...... ...+.-+++.||++.+.++..+|.+. .+..+...
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~ 331 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAG 331 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence 7655444321 1 11 34445544433110 12334457889999999999888653 23345555
Q ss_pred HHHHHHH--H-ccCccccccCCCCHHHHHHHHHHHHHhCCCccccCC---CCCceEEchhH
Q 047556 456 ELVFLWM--A-EGIIQESRNNKKQPEVLGREYFHDLLSRSILQPSSS---NNSKFVMHDLV 510 (1175)
Q Consensus 456 ~li~~w~--a-~g~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~---~~~~~~mHdlv 510 (1175)
.+...+. + .-. .. . .........++++|++.++|..... ....|++|++.
T Consensus 332 ~~~~~~~~~~~~~~-~~---~-~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 332 LLRQRYEDASLTMY-NV---K-PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHS-CC---C-CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHhhc-CC---C-CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 5544432 2 111 00 0 1223446688999999999987532 23446566554
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.4e-15 Score=179.34 Aligned_cols=214 Identities=15% Similarity=0.152 Sum_probs=131.8
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceee
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLD 678 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 678 (1175)
.+++|++|+|++|.++.+++..|..+++|++|+|++|.+..+++ ++.+++|++|+|++| .+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 44589999999999999988899999999999999999987765 999999999999999 6766664 48999999
Q ss_pred ecCccccccCCccCCCCCCccccCceeeccCCC-ccCccccccccccccccccCCccCCCChhhcchhhhcccccccccc
Q 047556 679 ITGAYLIKEMPFGMKELKNLQALSNFIVGTGTR-SSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALS 757 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 757 (1175)
+++|.+.. +|. ..+++|+.|++..+..... +..+..+++|+.|. +.+....+..+......+++|+.|+
T Consensus 106 L~~N~l~~-~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-------Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 106 AANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD-------LKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp CCSSCCCC-EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE-------CTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CcCCcCCC-CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE-------CCCCCCCCcChHHHhhhCCcccEEe
Confidence 99999544 433 2467888888877765543 33455566666554 2222222222222222344555555
Q ss_pred cccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccE
Q 047556 758 LQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKM 837 (1175)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 837 (1175)
++.+..... .....+++|+.|++++|....+|..+.. +++|+.|++++|.+.+ +|..+..+++|+.
T Consensus 176 Ls~N~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~ 241 (487)
T 3oja_A 176 LQYNFIYDV-----------KGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVL-IEKALRFSQNLEH 241 (487)
T ss_dssp CTTSCCCEE-----------ECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred cCCCccccc-----------cccccCCCCCEEECCCCCCCCCCHhHcC--CCCccEEEecCCcCcc-cchhhccCCCCCE
Confidence 544332110 1122344455555555544444444332 4455555555554432 3333333344455
Q ss_pred Eeecc
Q 047556 838 LEIHN 842 (1175)
Q Consensus 838 L~L~~ 842 (1175)
|++++
T Consensus 242 L~l~~ 246 (487)
T 3oja_A 242 FDLRG 246 (487)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 54444
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.59 E-value=3.1e-14 Score=161.49 Aligned_cols=290 Identities=12% Similarity=0.096 Sum_probs=178.0
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC------C
Q 047556 180 TERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF------D 253 (1175)
Q Consensus 180 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~------~ 253 (1175)
.+..|+||+.+++++.+++... +++.|+|++|+|||||++++++.. + .+|+++.... +
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~-------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER-------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS-------S-EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc-------C-cEEEEeecccccccCCC
Confidence 4467999999999999998642 589999999999999999998742 2 6777765432 5
Q ss_pred HHHHHHHHHHHhcC-----------------CCC-CccchHHHHHHHHHHhcC-ccEEEEEecCccCCc-------ccHH
Q 047556 254 VLSISRAILESITY-----------------SSC-DLKALNEVQVQLKKAVDG-KKIFLVLDDVWNEDY-------GLWE 307 (1175)
Q Consensus 254 ~~~~~~~il~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~~-------~~~~ 307 (1175)
...++..+...+.. ... .....++....+.+.... ++++||+||++.-+. +.+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 56666666665432 000 112345555556555543 399999999965321 2223
Q ss_pred HHhcccCCCCCCcEEEEecCChhhhhhc-----------C-CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHH
Q 047556 308 DLKAPLMGAAPNSKIVVTTRHSHVASTM-----------E-PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFR 375 (1175)
Q Consensus 308 ~l~~~l~~~~~gs~iivTtr~~~v~~~~-----------~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 375 (1175)
.+...+. ...+.++|+|++...+...+ + ....+.+.+|+.+|+.+++.......+. ... .+.+
T Consensus 154 ~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~ 228 (350)
T 2qen_A 154 LFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEI 228 (350)
T ss_dssp HHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHH
T ss_pred HHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHH
Confidence 3322222 22478899998876532111 1 1247899999999999999765321111 111 2356
Q ss_pred HHHHHhcCCchHHHHHHHHHhcC-CCHHHHHH-HHhhcccCCCCCCCchHHHHHhhhcC---ChhhhhhhhhhccCCCCc
Q 047556 376 DKVVGKCRGLPLAAKALGGLLRS-KRHDAWDE-ILNSKILDLPQRNGILPALSLSYHYL---PSHLKRCFSYCAIFPKDY 450 (1175)
Q Consensus 376 ~~i~~~c~glPlai~~~~~~l~~-~~~~~w~~-~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~f~~~a~fp~~~ 450 (1175)
.+|++.|+|+|+++..++..+.. .+...+.. ..+ .+...+.-.+..+ ++..+..+..+|. +
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-
Confidence 78999999999999998876532 23322211 111 0111111122222 7888999998887 2
Q ss_pred ccChhHHHHHHHHccCccccccCCCCHHHHHHHHHHHHHhCCCccccCCCCCceEE-chhHHHHHH
Q 047556 451 DFEEKELVFLWMAEGIIQESRNNKKQPEVLGREYFHDLLSRSILQPSSSNNSKFVM-HDLVHDLAQ 515 (1175)
Q Consensus 451 ~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~m-Hdlv~~~~~ 515 (1175)
.++...+.....+. . ++ . .......+++.|++.++|.... ..|.+ |++++++.+
T Consensus 295 ~~~~~~l~~~~~~~-~-----~~-~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 YNRWSLIRDYLAVK-G-----TK-I-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp CCSHHHHHHHHHHT-T-----CC-C-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHH-h-----CC-C-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 23444444432211 0 00 1 2344678999999999998752 45655 788887754
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=9.3e-15 Score=159.27 Aligned_cols=204 Identities=19% Similarity=0.108 Sum_probs=128.4
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
++|++|+|++|.++.+++..|.++++|++|+|++|.+..+|. .+.++++|++|+|++|......|..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 467888888888887776677788888888888888877754 5777888888888887433333456778888888888
Q ss_pred cCccccccCCccCCCCCCccccCceeeccCC--CccCccccccccccccccccCCccCCCChhhcchhhhcccccccccc
Q 047556 680 TGAYLIKEMPFGMKELKNLQALSNFIVGTGT--RSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALS 757 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~--~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 757 (1175)
++|.+....+..++.+++|+.|++..+.... .+..+..+++|+.| +
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L--------------------------------~ 155 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL--------------------------------D 155 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE--------------------------------E
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE--------------------------------E
Confidence 8877443333357777777777766654433 23233334444333 3
Q ss_pred cccccccCCCCchhHHHHHHhcCCCCCCcc-EEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCcc
Q 047556 758 LQWGSQFDISRNEDKEELVLGMLKPCTNIK-KLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLK 836 (1175)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 836 (1175)
++.+........ .+..+..++.|. .|++++|....+|..... ..+|+.|++++|.+.+..+..+..+++|+
T Consensus 156 Ls~N~l~~~~~~------~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 156 LSSNKIQSIYCT------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp CCSSCCCEECGG------GGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred CCCCCCCcCCHH------HhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhccccccc
Confidence 332221100000 001111122232 677888877777766654 45788899988887765555566678888
Q ss_pred EEeeccCc
Q 047556 837 MLEIHNCK 844 (1175)
Q Consensus 837 ~L~L~~~~ 844 (1175)
.|++++++
T Consensus 228 ~L~l~~N~ 235 (276)
T 2z62_A 228 KIWLHTNP 235 (276)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 88888643
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=6.3e-15 Score=156.66 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=80.2
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEecccc-cccccc-cccCcccccEEeccCccccccCc-hhhhccCCCceee
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTW-IRNLPK-STCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHLD 678 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 678 (1175)
+|++|+|++|.++.+++..|.++++|++|++++|. ++.+|. .|.++++|++|++++|+.+..+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78999999999999997789999999999999996 888876 68899999999999833677776 4578899999999
Q ss_pred ecCccccccCCccCCCCCCcc
Q 047556 679 ITGAYLIKEMPFGMKELKNLQ 699 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~ 699 (1175)
+++|. +..+|. +..+++|+
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTD 130 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCC
T ss_pred CCCCC-Cccccc-cccccccc
Confidence 99998 455775 66666666
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=2.8e-14 Score=154.66 Aligned_cols=178 Identities=24% Similarity=0.263 Sum_probs=120.1
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCc-hhhhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 678 (1175)
++|+.|+|++|.++.+++..|.++++|++|+|++|.++.+|.. +.++++|++|+|++| .+..+| ..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEE
Confidence 4677888888888777766777888888888888888777665 467788888888877 455554 3457778888888
Q ss_pred ecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccc
Q 047556 679 ITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSL 758 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 758 (1175)
+++|.+....|..++.+++|+.|++..+.....+
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------------------------------------- 149 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP---------------------------------------------- 149 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------------------------------
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC----------------------------------------------
Confidence 8877744333344566666666655443221111
Q ss_pred ccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEE
Q 047556 759 QWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKML 838 (1175)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L 838 (1175)
...+..+++|+.|++++|....+|..... .+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 150 ------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 150 ------------------KGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp ------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ------------------HhHccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 11134456777888888777777764332 37888888888888766555556666888888
Q ss_pred eeccCc
Q 047556 839 EIHNCK 844 (1175)
Q Consensus 839 ~L~~~~ 844 (1175)
++++++
T Consensus 211 ~l~~N~ 216 (270)
T 2o6q_A 211 QLQENP 216 (270)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 887754
No 80
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=5.8e-14 Score=159.74 Aligned_cols=291 Identities=12% Similarity=0.076 Sum_probs=172.9
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-----CCH
Q 047556 180 TERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-----FDV 254 (1175)
Q Consensus 180 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~ 254 (1175)
.+..|+||+++++.+.+ +.. +++.|+|++|+|||+|++++++... . ..+|+++... .+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN-----L-PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT-----C-CEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC-----C-CEEEEEchhhccccCCCH
Confidence 34679999999999999 642 5899999999999999999987532 1 2578887642 344
Q ss_pred HHHHHHHHHHhcC--------------------CCC---------CccchHHHHHHHHHHhcCccEEEEEecCccCCc--
Q 047556 255 LSISRAILESITY--------------------SSC---------DLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDY-- 303 (1175)
Q Consensus 255 ~~~~~~il~~l~~--------------------~~~---------~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-- 303 (1175)
..++..+.+.+.. +.. .......+...+.+.-+ ++++||+||++.-+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 4455444443310 000 01233444444544322 499999999965321
Q ss_pred -ccHHHHhcccCCCCCCcEEEEecCChhhhhh----------cC--CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchh
Q 047556 304 -GLWEDLKAPLMGAAPNSKIVVTTRHSHVAST----------ME--PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQI 370 (1175)
Q Consensus 304 -~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~----------~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~ 370 (1175)
..|..+...+.....+.++|+|++....... .. ....+.+.+|+.+|+.+++......... ....
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~- 231 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKD- 231 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCC-
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCc-
Confidence 2232222222222246799999998653221 11 1257899999999999999875421111 1111
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCC-CHHHHHHHHhhcccCCCCCCCchHHHH-Hhhh--cCChhhhhhhhhhccC
Q 047556 371 SDLFRDKVVGKCRGLPLAAKALGGLLRSK-RHDAWDEILNSKILDLPQRNGILPALS-LSYH--YLPSHLKRCFSYCAIF 446 (1175)
Q Consensus 371 ~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~~f~~~a~f 446 (1175)
. ..|++.|+|+|+++..++..+... +...|..-.-.... ..+...+. +.++ .+++..+..+..+|+
T Consensus 232 ~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 232 Y----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-----KLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp H----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred H----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-----HHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 1 679999999999999998776432 33334221100000 00111111 2221 678889999999998
Q ss_pred CCCcccChhHHHHHHH-HccCccccccCCCCHHHHHHHHHHHHHhCCCccccCCCCCceE-EchhHHHHH
Q 047556 447 PKDYDFEEKELVFLWM-AEGIIQESRNNKKQPEVLGREYFHDLLSRSILQPSSSNNSKFV-MHDLVHDLA 514 (1175)
Q Consensus 447 p~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~-mHdlv~~~~ 514 (1175)
+. +...+....- ..|. .........+++.|++.++|.... ..|+ .|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~--------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI--------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS--------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCC--------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 22 3444432110 1120 012344678899999999998753 4566 478888764
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=4.5e-15 Score=164.70 Aligned_cols=203 Identities=19% Similarity=0.117 Sum_probs=117.2
Q ss_pred cCCCccEEEecccccccCCCCcc--CCcccccEEEecccccccccccccCc-----ccccEEeccCccccccCchhhhcc
Q 047556 599 KCRKLRVLSLSRSYITELPKGSM--SGWKHLRYLNLSHTWIRNLPKSTCSL-----INLQILLLRGCYYLLKLPSKMRKL 671 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~--~~l~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~i~~L 671 (1175)
.+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+..+|..++.+ ++|++|+|++|......|..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 46666666666666653222333 56666666666666666556555555 666666666663323233556666
Q ss_pred CCCceeeecCcccccc--CCccC--CCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhh
Q 047556 672 INLRHLDITGAYLIKE--MPFGM--KELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEIL 747 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~--~p~~~--~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 747 (1175)
++|++|++++|.+.+. +|..+ +.+++|+.|++..+..... .......+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------------~~~~~~~~ 224 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP----------------------------SGVCSALA 224 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH----------------------------HHHHHHHH
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch----------------------------HHHHHHHH
Confidence 6666666666654332 22232 5555555554443322110 01111223
Q ss_pred cccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCC
Q 047556 748 YENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPS 827 (1175)
Q Consensus 748 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~ 827 (1175)
..+++|+.|+++.+...... ....+..+++|+.|++++|....+|.++. ++|+.|++++|.+.+. |.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p~ 291 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAA--------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-PS 291 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSC--------CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-CC
T ss_pred hcCCCCCEEECCCCcCCccc--------chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-hh
Confidence 34566777777655431111 11233446788888888888888887664 6788888888887655 55
Q ss_pred CcCCCCCccEEeeccC
Q 047556 828 TVLWSSSLKMLEIHNC 843 (1175)
Q Consensus 828 ~~~~~~~L~~L~L~~~ 843 (1175)
+..+++|+.|++++.
T Consensus 292 -~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 292 -PDELPQVGNLSLKGN 306 (312)
T ss_dssp -TTTSCEEEEEECTTC
T ss_pred -HhhCCCCCEEeccCC
Confidence 555688888888774
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=1.4e-14 Score=157.24 Aligned_cols=105 Identities=24% Similarity=0.271 Sum_probs=80.4
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCc-hhhhccCCCc
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLP-SKMRKLINLR 675 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~ 675 (1175)
+..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++ .+.++++|++|+|++| .+..+| ..++++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence 456788999999999888776 5888999999999999988865 7888999999999998 555554 4478899999
Q ss_pred eeeecCccccccCCccCCCCCCccccCcee
Q 047556 676 HLDITGAYLIKEMPFGMKELKNLQALSNFI 705 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~ 705 (1175)
+|++++|.+....|..++.+++|+.|++..
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 999999884433333356666666665443
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=1.3e-14 Score=158.58 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=44.3
Q ss_pred CCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCc
Q 047556 780 LKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCK 844 (1175)
Q Consensus 780 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~ 844 (1175)
+..+++|+.|++++|....+|..++. .+++|+.|++++|.+. .+|..+...++|+.|++++.+
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred cccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 34567788888888888777776543 4788888888888875 455544444778888887644
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=8.2e-14 Score=152.14 Aligned_cols=182 Identities=21% Similarity=0.221 Sum_probs=141.4
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchhhhccCCCc
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLR 675 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 675 (1175)
+.++++++.++++++.++.+|. .+. ++|++|+|++|.+..+ |..+.++++|++|+|++| .+..+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 5678899999999999999984 443 6899999999999977 567999999999999998 67777764 8899999
Q ss_pred eeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccc
Q 047556 676 HLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEA 755 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 755 (1175)
+|++++|. +..+|..+..+++|+.|++..+.....+
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~------------------------------------------- 116 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLP------------------------------------------- 116 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCC-------------------------------------------
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccC-------------------------------------------
Confidence 99999998 5678877888888887766554322111
Q ss_pred cccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCc
Q 047556 756 LSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSL 835 (1175)
Q Consensus 756 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 835 (1175)
...+..+++|+.|++++|....+|...+. .+++|+.|++++|.+....+..+..+++|
T Consensus 117 ---------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 117 ---------------------LGALRGLGELQELYLKGNELKTLPPGLLT-PTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp ---------------------SSTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred ---------------------HHHHcCCCCCCEEECCCCCCCccChhhcc-cccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 11234467888999999988888876543 48999999999999876655666777999
Q ss_pred cEEeeccCcCcceec
Q 047556 836 KMLEIHNCKNLQHLV 850 (1175)
Q Consensus 836 ~~L~L~~~~~l~~l~ 850 (1175)
+.|+++++ .++.++
T Consensus 175 ~~L~L~~N-~l~~ip 188 (290)
T 1p9a_G 175 DTLLLQEN-SLYTIP 188 (290)
T ss_dssp CEEECCSS-CCCCCC
T ss_pred CEEECCCC-cCCccC
Confidence 99999884 344443
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=2.3e-14 Score=158.25 Aligned_cols=191 Identities=21% Similarity=0.202 Sum_probs=132.6
Q ss_pred hcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCcee
Q 047556 598 SKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHL 677 (1175)
Q Consensus 598 ~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 677 (1175)
..+++|+.|++++|.++.++ .+..+++|++|+|++|.+..+|. +.++++|++|+|++| .+..+| .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence 45678888888888888776 47788888888888888888877 888888888888888 566666 47888888888
Q ss_pred eecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccc
Q 047556 678 DITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALS 757 (1175)
Q Consensus 678 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 757 (1175)
++++|. +..+|. +..+++|+.|++..+.....+ .+..+ ++|+.|+
T Consensus 113 ~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l--------------------------------~~L~~L~ 157 (308)
T 1h6u_A 113 DLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGL--------------------------------TNLQYLS 157 (308)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGC--------------------------------TTCCEEE
T ss_pred ECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCc-cccCC--------------------------------CCccEEE
Confidence 888887 444553 777788888776665443333 13333 3344444
Q ss_pred cccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccE
Q 047556 758 LQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKM 837 (1175)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 837 (1175)
++.+.... ...+..+++|+.|++++|....++. +. .+++|+.|++++|.+.+.. + +..+++|+.
T Consensus 158 l~~n~l~~-----------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~ 221 (308)
T 1h6u_A 158 IGNAQVSD-----------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-P-LANTSNLFI 221 (308)
T ss_dssp CCSSCCCC-----------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-G-GTTCTTCCE
T ss_pred ccCCcCCC-----------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-c-ccCCCCCCE
Confidence 43332211 0114567788888888888777765 33 3788999999988876544 3 455688888
Q ss_pred EeeccCc
Q 047556 838 LEIHNCK 844 (1175)
Q Consensus 838 L~L~~~~ 844 (1175)
|+++++.
T Consensus 222 L~l~~N~ 228 (308)
T 1h6u_A 222 VTLTNQT 228 (308)
T ss_dssp EEEEEEE
T ss_pred EEccCCe
Confidence 8888754
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=2.4e-13 Score=147.28 Aligned_cols=179 Identities=20% Similarity=0.243 Sum_probs=137.7
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchh-hhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 678 (1175)
...+.++++++.++.+| ..+. .+|++|+|++|.+..+|. .|.++++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip-~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIP-SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCC-SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccC-CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 35789999999999998 4444 689999999999998875 7999999999999999 67777765 58899999999
Q ss_pred ecCccccccCCc-cCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccc
Q 047556 679 ITGAYLIKEMPF-GMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALS 757 (1175)
Q Consensus 679 l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 757 (1175)
+++|. +..+|. .+..+++|+.|++..+.....+
T Consensus 92 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------------------------- 125 (270)
T 2o6q_A 92 VTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLP--------------------------------------------- 125 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCC---------------------------------------------
T ss_pred CCCCc-CCcCCHhHcccccCCCEEECCCCccCeeC---------------------------------------------
Confidence 99998 445553 4677777777765443211111
Q ss_pred cccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccE
Q 047556 758 LQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKM 837 (1175)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 837 (1175)
...+..+++|+.|++++|....+|..... .+++|+.|++++|.+....+..+..+++|+.
T Consensus 126 -------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 126 -------------------PRVFDSLTKLTYLSLGYNELQSLPKGVFD-KLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp -------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred -------------------HHHhCcCcCCCEEECCCCcCCccCHhHcc-CCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 11234567899999999988888876432 4899999999999987766666777799999
Q ss_pred EeeccCcCcceec
Q 047556 838 LEIHNCKNLQHLV 850 (1175)
Q Consensus 838 L~L~~~~~l~~l~ 850 (1175)
|+++++ .++.++
T Consensus 186 L~L~~N-~l~~~~ 197 (270)
T 2o6q_A 186 LKLDNN-QLKRVP 197 (270)
T ss_dssp EECCSS-CCSCCC
T ss_pred EECCCC-cCCcCC
Confidence 999985 444443
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=1.1e-13 Score=150.71 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=76.0
Q ss_pred EEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCc-hhhhccCCCceeeecCc
Q 047556 605 VLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHLDITGA 682 (1175)
Q Consensus 605 ~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 682 (1175)
..+..+..+..+| ..+. ++|++|++++|.++.+|. .+.++++|++|+|++| .+..+| ..+.++++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip-~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCC-SSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccC-CCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC
Confidence 4566677788888 4443 589999999999998876 7999999999999999 555554 57899999999999999
Q ss_pred cccccCCccCCCCCCccccCcee
Q 047556 683 YLIKEMPFGMKELKNLQALSNFI 705 (1175)
Q Consensus 683 ~~~~~~p~~~~~L~~L~~L~~~~ 705 (1175)
.+....|..+..+++|+.|++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTT
T ss_pred ccCccChhhhcCCccccEEECCC
Confidence 85554455677777777775443
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=1.4e-15 Score=186.39 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=38.2
Q ss_pred CCCcCeEEeecCCCCCcCCCCC-CCcCccceEEeecCCCCCc----cCCCCCCCCEEeeCCCCC
Q 047556 905 SVTLKRLGIRRCPELTSLSPGI-RLPEALEQLYIWDCQKLES----IPDGLHNVQRIDIQRCPS 963 (1175)
Q Consensus 905 ~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~----~p~~~~~L~~L~l~~~~~ 963 (1175)
+++|+.|++++|.........+ ..+++|+.|++++|+.... +...+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6778888888886422211111 3467888888888876321 223467888888888864
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=8.1e-13 Score=149.05 Aligned_cols=237 Identities=14% Similarity=0.066 Sum_probs=127.0
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEEeeccCcCcceeccccccccceEEEccCC
Q 047556 787 KKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRITSCD 866 (1175)
Q Consensus 787 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l~~c~ 866 (1175)
+.++.+++..+.+|..+ .++++.|+|++|.+....+..+..+++|+.|+|+++..++.++.....
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~----------- 76 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS----------- 76 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC-----------
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh-----------
Confidence 45677777888888765 357899999999886554556777788888888886544444321110
Q ss_pred ccccccccCCCCCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcC-CCCCCCcCccceEEeecCCCCCc
Q 047556 867 SLTFIARRKLPSSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSL-SPGIRLPEALEQLYIWDCQKLES 945 (1175)
Q Consensus 867 ~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~ 945 (1175)
.++++.++.+.++..+..+ |..+..+++|++|++++|.....
T Consensus 77 -------------------------------------~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 77 -------------------------------------NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp -------------------------------------SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred -------------------------------------cchhhhhhhcccCCcccccCchhhhhccccccccccccccccC
Confidence 0122222222222222222 22334445555555555543222
Q ss_pred cCCCC---CCCCEEeeCCCCCccccccCCC---CCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCCC
Q 047556 946 IPDGL---HNVQRIDIQRCPSLVSLAERGL---PITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGF 1019 (1175)
Q Consensus 946 ~p~~~---~~L~~L~l~~~~~L~~l~~~~~---~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 1019 (1175)
.+..+ .++..|++.++..+..++...+ +..++.|+++++ .++.+|..+...++|++|++++|..++.+|.
T Consensus 120 ~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~--- 195 (350)
T 4ay9_X 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPN--- 195 (350)
T ss_dssp CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCT---
T ss_pred Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCH---
Confidence 11111 1222333333333333332211 122333444333 2333443333444555555554444444443
Q ss_pred CCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCC
Q 047556 1020 PNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQ 1099 (1175)
Q Consensus 1020 ~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~ 1099 (1175)
..|..+++|+.|++++|. +..+|... +.+|+.|.+.++++++.+| .+.
T Consensus 196 ----------------------~~f~~l~~L~~LdLs~N~---l~~lp~~~-----~~~L~~L~~l~~~~l~~lP--~l~ 243 (350)
T 4ay9_X 196 ----------------------DVFHGASGPVILDISRTR---IHSLPSYG-----LENLKKLRARSTYNLKKLP--TLE 243 (350)
T ss_dssp ----------------------TTTTTEECCSEEECTTSC---CCCCCSSS-----CTTCCEEECTTCTTCCCCC--CTT
T ss_pred ----------------------HHhccCcccchhhcCCCC---cCccChhh-----hccchHhhhccCCCcCcCC--Cch
Confidence 245667778888888765 66676633 4677777777777888887 467
Q ss_pred CCCCCCceeccC
Q 047556 1100 SLTSLEFLWIDD 1111 (1175)
Q Consensus 1100 ~l~~L~~L~l~~ 1111 (1175)
+|++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 788888888754
No 90
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.50 E-value=1.2e-14 Score=130.82 Aligned_cols=78 Identities=24% Similarity=0.394 Sum_probs=65.1
Q ss_pred HHHHHHHhcChhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhc--cCCcHHHHHHHHHHHHhhhhhhhhhhhhh
Q 047556 12 FQVIFDRLAPHGELLNFVRQLGGGVDSELKKWKNTLMMIQAVLSDAEEK--QLTDQAVKIWLDNLRDLAYDVEDNLDVFA 89 (1175)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~eD~ld~~~ 89 (1175)
|+.+++||.+. ...++.... ||++++++|+++|++|++||.+|+.+ +..+.+++.|+++||++|||+|||||+|.
T Consensus 3 v~~ll~KL~~l-l~~E~~l~~--gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 3 ISNLIPKLGEL-LTEEFKLHK--GVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp TCSHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566555 334444444 89999999999999999999999988 56789999999999999999999999999
Q ss_pred hhH
Q 047556 90 TSA 92 (1175)
Q Consensus 90 ~~~ 92 (1175)
++.
T Consensus 80 ~~~ 82 (115)
T 3qfl_A 80 VQV 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=5.7e-14 Score=165.54 Aligned_cols=212 Identities=11% Similarity=0.042 Sum_probs=121.1
Q ss_pred CCccEEEEecCcCchhhhcCccccCCCCCCcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEe
Q 047556 878 SSLKRLEIENCENLQHLVYGEEDATSSSVTLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRID 957 (1175)
Q Consensus 878 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~ 957 (1175)
++|+.|+++++. +..++. .....+++|+.|++++|......| +..+++|++|++++|... .+|. .++|+.|+
T Consensus 34 ~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNP-LSQISA---ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSC-CCCCCG---GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-CTTCCEEE
T ss_pred CCccEEEeeCCc-CCCCCH---HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-CCCcCEEE
Confidence 467777776653 332221 122346677777777775433333 456677777777777533 3332 26777777
Q ss_pred eCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEeeCCCCCCCCCCCC---CCCCcceEEEeccCcc
Q 047556 958 IQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYLQRCPSIVRFPEEG---FPNNLVELKIRGVDVK 1034 (1175)
Q Consensus 958 l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~---~~~~L~~L~l~~~~~~ 1034 (1175)
+++| .+..++...+ ++|+.|++++|......|..+..+++|+.|++++| .+..++... .+++|+.|++++|.+.
T Consensus 106 L~~N-~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANN-NISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSS-CCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCC-cCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccc
Confidence 7765 3444444333 46777777766554444556666777777777776 344322221 2466667776666555
Q ss_pred chhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCC
Q 047556 1035 MYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCP 1113 (1175)
Q Consensus 1035 ~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1113 (1175)
.+. .+..+++|+.|++++|. +..+|+.. ..+++|+.|++++ |.++.+| ..+..+++|+.|++++|+
T Consensus 183 ~~~-----~~~~l~~L~~L~Ls~N~---l~~~~~~~---~~l~~L~~L~Ls~-N~l~~lp-~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 183 DVK-----GQVVFAKLKTLDLSSNK---LAFMGPEF---QSAAGVTWISLRN-NKLVLIE-KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EEE-----CCCCCTTCCEEECCSSC---CCEECGGG---GGGTTCSEEECTT-SCCCEEC-TTCCCCTTCCEEECTTCC
T ss_pred ccc-----ccccCCCCCEEECCCCC---CCCCCHhH---cCCCCccEEEecC-CcCcccc-hhhccCCCCCEEEcCCCC
Confidence 442 23346667777776655 44455442 2345666777766 5666666 346666667777776644
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=3.6e-13 Score=149.27 Aligned_cols=209 Identities=15% Similarity=0.089 Sum_probs=143.3
Q ss_pred CCCcCeEEeecCCCCCcCCCCC--CCcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEc
Q 047556 905 SVTLKRLGIRRCPELTSLSPGI--RLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIW 982 (1175)
Q Consensus 905 ~~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~ 982 (1175)
+++|++|++++|......|..+ ..+++|++|++++|......+. +...... ..++|++|+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---------------~~~~~~~-~~~~L~~L~Ls 153 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW---------------LAELQQW-LKPGLKVLSIA 153 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS---------------HHHHHTT-BCSCCCEEEEE
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh---------------hHHHHhh-hccCCCEEEee
Confidence 3568888898887766677665 6788899999998875543221 0000011 12355666666
Q ss_pred cCcccccCccccCCCCcccEEEeeCCCCCCC--CCCC---CCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEecc
Q 047556 983 SCEKLEALPNDLHKLNSLEHLYLQRCPSIVR--FPEE---GFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEG 1057 (1175)
Q Consensus 983 ~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~--lp~~---~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~ 1057 (1175)
+|......|..+..+++|++|++++|...+. ++.. ..+++|++|++++|....+.......+.++++|+.|++++
T Consensus 154 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 154 QAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred CCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 6655444556788999999999999954321 2111 2467899999998888766554333457789999999999
Q ss_pred CCCcccccc-chhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCCCCCCCCcceeeeccCc
Q 047556 1058 CDDDEAECF-PDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPEVGLPSSILWLNIWSCP 1136 (1175)
Q Consensus 1058 c~~~~~~~~-~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~cp 1136 (1175)
|. +..+ |........+++|++|++++ |+++.+|. .+. ++|+.|++++ +.++.+|....+++|+.|++++++
T Consensus 234 N~---l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~-~~~--~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 234 NS---LRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPK-GLP--AKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SC---CCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCS-CCC--SCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTT
T ss_pred CC---CCccchhhHHhccCcCcCCEEECCC-CCCCchhh-hhc--CCCCEEECCC-CcCCCCchhhhCCCccEEECcCCC
Confidence 77 4444 44333233457999999998 68888884 442 7999999998 567777765556789999999886
Q ss_pred h
Q 047556 1137 M 1137 (1175)
Q Consensus 1137 ~ 1137 (1175)
.
T Consensus 306 l 306 (310)
T 4glp_A 306 F 306 (310)
T ss_dssp T
T ss_pred C
Confidence 3
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=3.5e-13 Score=152.08 Aligned_cols=86 Identities=20% Similarity=0.155 Sum_probs=58.5
Q ss_pred CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCC-CcCCCCCccEEeeccCcCcceeccccccccceEEE
Q 047556 784 TNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPS-TVLWSSSLKMLEIHNCKNLQHLVDENNLQLESLRI 862 (1175)
Q Consensus 784 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~l~~l~~~~~~~L~~L~l 862 (1175)
..++.|++++|....+|...+. ..+|+.|.+.++...+.+|. .+..+++|+.|+++++ .++.++......|+.|.+
T Consensus 154 ~~l~~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp SSCEEEECCSSCCCEECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEEC
T ss_pred hhhhhhccccccccCCChhhcc--ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhh
Confidence 3577888888888888877764 67888888887665566664 5667788999998874 566665544444555555
Q ss_pred ccCCcccccc
Q 047556 863 TSCDSLTFIA 872 (1175)
Q Consensus 863 ~~c~~l~~~~ 872 (1175)
.++.+++.+|
T Consensus 231 l~~~~l~~lP 240 (350)
T 4ay9_X 231 RSTYNLKKLP 240 (350)
T ss_dssp TTCTTCCCCC
T ss_pred ccCCCcCcCC
Confidence 5555544443
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=9.1e-13 Score=140.94 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=112.0
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
...+.++++++.++.+| ..+. .+|++|+|++|.+..++. .+.++++|++|+|++|......|..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35667788888777777 3343 577888888888776644 5777888888888887433333445777888888888
Q ss_pred cCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccccc
Q 047556 680 TGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQ 759 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 759 (1175)
++|.+....+..+..+++|+.|++..+.....+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------------------------------- 123 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP----------------------------------------------- 123 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------------------------------
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcC-----------------------------------------------
Confidence 887744333344566666666655443222111
Q ss_pred cccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEeCCCCCCCCCCCcCCCCCccEE
Q 047556 760 WGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSW-IGDPSYSKMEVLILENCENCTYLPSTVLWSSSLKML 838 (1175)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~L 838 (1175)
...+..+++|+.|++++|....+|.. +. .+++|+.|+|++|.+.+..+..+..+++|+.|
T Consensus 124 -----------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 124 -----------------SGVFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp -----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -----------------hhHhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 01123345677777777777666653 33 37778888888887766655566666778888
Q ss_pred eeccCc
Q 047556 839 EIHNCK 844 (1175)
Q Consensus 839 ~L~~~~ 844 (1175)
++++++
T Consensus 185 ~l~~N~ 190 (251)
T 3m19_A 185 TLFGNQ 190 (251)
T ss_dssp ECCSCC
T ss_pred EeeCCc
Confidence 877643
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=1.7e-13 Score=151.26 Aligned_cols=194 Identities=19% Similarity=0.194 Sum_probs=144.2
Q ss_pred hcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccc
Q 047556 558 HEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWI 637 (1175)
Q Consensus 558 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i 637 (1175)
.++++|+.|.+.++... .++ .+..+++|++|+|++|.++.+++ +..+++|++|+|++|.+
T Consensus 38 ~~l~~L~~L~l~~~~i~-----------------~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-----------------TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHHTCCEEECTTSCCC-----------------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHcCCcCEEEeeCCCcc-----------------Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 35667777776554310 012 36789999999999999999984 99999999999999999
Q ss_pred ccccccccCcccccEEeccCccccccCchhhhccCCCceeeecCccccccCCccCCCCCCccccCceeeccCCCccCccc
Q 047556 638 RNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKD 717 (1175)
Q Consensus 638 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~ 717 (1175)
..+| .+.++++|++|+|++| .+..+|. +..+++|++|++++|. +..++. ++.+++|+.|++..+.....+ .+..
T Consensus 98 ~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~ 171 (308)
T 1h6u_A 98 KNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLT-PLAN 171 (308)
T ss_dssp SCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTT
T ss_pred CCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCCh-hhcC
Confidence 9886 6999999999999999 6777876 9999999999999998 455554 888999999988776544433 1333
Q ss_pred cccccccccccccCCccCCCChhhcchhhhcccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCC
Q 047556 718 LKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGK 797 (1175)
Q Consensus 718 l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 797 (1175)
++ +|+.|+++.+..... ..+..+++|+.|++++|...
T Consensus 172 l~--------------------------------~L~~L~l~~n~l~~~-----------~~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 172 LS--------------------------------KLTTLKADDNKISDI-----------SPLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CT--------------------------------TCCEEECCSSCCCCC-----------GGGGGCTTCCEEECTTSCCC
T ss_pred CC--------------------------------CCCEEECCCCccCcC-----------hhhcCCCCCCEEEccCCccC
Confidence 33 444444443322111 01445778899999988887
Q ss_pred CCCCCCCCCCCCCccEEEEeCCCCCC
Q 047556 798 RFPSWIGDPSYSKMEVLILENCENCT 823 (1175)
Q Consensus 798 ~~p~~~~~~~l~~L~~L~L~~~~~~~ 823 (1175)
.++. +. .+++|+.|++++|.+..
T Consensus 209 ~~~~-l~--~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 209 DVSP-LA--NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp BCGG-GT--TCTTCCEEEEEEEEEEC
T ss_pred cccc-cc--CCCCCCEEEccCCeeec
Confidence 7774 43 48899999999988743
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=8.2e-13 Score=143.16 Aligned_cols=106 Identities=26% Similarity=0.361 Sum_probs=87.4
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCc-hhhhccCCC
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLP-SKMRKLINL 674 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L 674 (1175)
+..+++|++|+|++|.++.++ .+..+++|++|+|++|.++.+|.. +.++++|++|+|++| .+..+| ..++.+++|
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNL 135 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCC
Confidence 678999999999999999875 789999999999999999988665 789999999999999 555555 447999999
Q ss_pred ceeeecCccccccCCc-cCCCCCCccccCceee
Q 047556 675 RHLDITGAYLIKEMPF-GMKELKNLQALSNFIV 706 (1175)
Q Consensus 675 ~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~ 706 (1175)
++|++++|.+. .+|. .++.+++|+.|++..+
T Consensus 136 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 136 TYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccC-ccCHHHhccCccCCEEECCCC
Confidence 99999999844 4443 3677777777765544
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=150.23 Aligned_cols=206 Identities=15% Similarity=0.058 Sum_probs=142.1
Q ss_pred cCCCccEEEecccccccCCCCcc--CCcccccEEEecccccccc-c----ccccCcccccEEeccCccccccCchhhhcc
Q 047556 599 KCRKLRVLSLSRSYITELPKGSM--SGWKHLRYLNLSHTWIRNL-P----KSTCSLINLQILLLRGCYYLLKLPSKMRKL 671 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~--~~l~~L~~L~L~~~~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 671 (1175)
.+++|+.|+|++|.+.+..+..+ ..+++|++|+|++|.+... | ..+..+++|++|+|++|......|..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45679999999999987766777 8999999999999998852 2 345679999999999995545555778999
Q ss_pred CCCceeeecCcccccc--C--CccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhh
Q 047556 672 INLRHLDITGAYLIKE--M--PFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEIL 747 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~--~--p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 747 (1175)
++|++|++++|.+.+. + +..++.+++|++|++..+.....+. .....+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----------------------------~~~~l~ 220 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG----------------------------VCAALA 220 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH----------------------------HHHHHH
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH----------------------------HHHHHH
Confidence 9999999999985432 2 2234678888888776654322110 001113
Q ss_pred cccccccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCCCCC
Q 047556 748 YENQNLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTYLPS 827 (1175)
Q Consensus 748 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~ 827 (1175)
..+++|+.|+++++........ ....+..+++|+.|++++|....+|..+ +++|+.|++++|.+.+. |.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~-~~ 289 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNP------SAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRA-PQ 289 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCS------CCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSC-CC
T ss_pred hcCCCCCEEECCCCCCCccchh------hHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCC-ch
Confidence 3445666666665543211000 0112223468999999999888888766 36899999999988653 43
Q ss_pred CcCCCCCccEEeeccCc
Q 047556 828 TVLWSSSLKMLEIHNCK 844 (1175)
Q Consensus 828 ~~~~~~~L~~L~L~~~~ 844 (1175)
...+++|+.|++++.+
T Consensus 290 -~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 -PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -TTSCCCCSCEECSSTT
T ss_pred -hhhCCCccEEECcCCC
Confidence 3445888888888743
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=1.4e-14 Score=166.33 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=44.2
Q ss_pred HhhhcCCCccEEEecccccccCCC----CccCCcccccEEEecccccc----cccccc-------cCcccccEEeccCcc
Q 047556 595 NLLSKCRKLRVLSLSRSYITELPK----GSMSGWKHLRYLNLSHTWIR----NLPKST-------CSLINLQILLLRGCY 659 (1175)
Q Consensus 595 ~~~~~~~~Lr~L~Ls~~~i~~l~~----~~~~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~ 659 (1175)
..+..+++|++|+|++|.+....+ ..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 344455555555555555543211 22445555555555554333 223222 455555555555553
Q ss_pred ccc----cCchhhhccCCCceeeecCccc
Q 047556 660 YLL----KLPSKMRKLINLRHLDITGAYL 684 (1175)
Q Consensus 660 ~l~----~lp~~i~~L~~L~~L~l~~~~~ 684 (1175)
... .+|..+.++++|++|++++|.+
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 222 2455555555555555555553
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=1.1e-12 Score=143.43 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=82.3
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCce
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRH 676 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 676 (1175)
+..+++|+.|++++|.+..++ .+..+++|++|+|++|.++.+|. +.++++|++|+|++| .+..+|. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCE
Confidence 346788999999999998886 48889999999999999998877 889999999999998 6677665 889999999
Q ss_pred eeecCccccccCCccCCCCCCccccCceee
Q 047556 677 LDITGAYLIKEMPFGMKELKNLQALSNFIV 706 (1175)
Q Consensus 677 L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~ 706 (1175)
|++++|. +..+ ..+..+++|+.|++..+
T Consensus 117 L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 117 LSLEHNG-ISDI-NGLVHLPQLESLYLGNN 144 (291)
T ss_dssp EECTTSC-CCCC-GGGGGCTTCCEEECCSS
T ss_pred EECCCCc-CCCC-hhhcCCCCCCEEEccCC
Confidence 9999988 4444 35666677776655444
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=2.9e-12 Score=136.98 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=122.4
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCc-hhhhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 678 (1175)
++|+.|+|++|.+..+++..|.++++|++|+|++|.+..++. .+.++++|++|+|++| .+..+| ..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence 589999999999999998889999999999999999998755 5899999999999999 555555 5578999999999
Q ss_pred ecCccccccCCcc-CCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhcccccccccc
Q 047556 679 ITGAYLIKEMPFG-MKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALS 757 (1175)
Q Consensus 679 l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 757 (1175)
+++|. +..+|.. +..+++|+.|++..+.....+
T Consensus 114 L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------------------------------- 147 (251)
T 3m19_A 114 LGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIP--------------------------------------------- 147 (251)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------------------------------------
T ss_pred cCCCc-CCCcChhHhccCCcccEEECcCCcCCccC---------------------------------------------
Confidence 99998 4455554 688888888876554322211
Q ss_pred cccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCCC
Q 047556 758 LQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCTY 824 (1175)
Q Consensus 758 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 824 (1175)
...+..+++|+.|++++|....+|..... .+++|+.|++++|.+...
T Consensus 148 -------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 -------------------AGAFDKLTNLQTLSLSTNQLQSVPHGAFD-RLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSCCBCTT
T ss_pred -------------------HHHcCcCcCCCEEECCCCcCCccCHHHHh-CCCCCCEEEeeCCceeCC
Confidence 01233456788888888888887764332 489999999999987543
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=6.8e-14 Score=157.60 Aligned_cols=211 Identities=14% Similarity=0.111 Sum_probs=129.2
Q ss_pred HHhhhcC--CCccEEEecccccccCCCCccCCcccccEEEeccccccc--ccccccCcccccEEeccCccccccCchhhh
Q 047556 594 SNLLSKC--RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRN--LPKSTCSLINLQILLLRGCYYLLKLPSKMR 669 (1175)
Q Consensus 594 ~~~~~~~--~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 669 (1175)
+..+..+ ++++.|++++|.+...++ .+..+++|++|+|++|.+.. +|..+..+++|++|+|++|......|..++
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 139 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh
Confidence 3445555 788888888888887774 46678888888888888763 777788888888888888854446777788
Q ss_pred ccCCCceeeecCccccc--cCCccCCCCCCccccCceee-ccCCCccCccccccccccccccccCCccCCCChhhcchhh
Q 047556 670 KLINLRHLDITGAYLIK--EMPFGMKELKNLQALSNFIV-GTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEI 746 (1175)
Q Consensus 670 ~L~~L~~L~l~~~~~~~--~~p~~~~~L~~L~~L~~~~~-~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~ 746 (1175)
++++|++|++++|..+. .+|..+..+++|+.|++..+ ... +......
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~------------------------------~~~~~~~ 189 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT------------------------------EKHVQVA 189 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC------------------------------HHHHHHH
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC------------------------------hHHHHHH
Confidence 88888888888883232 24544566666666655443 211 1111222
Q ss_pred hcccc-cccccccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCC-C-CCCCCCCCCCCCCccEEEEeCCCCC-
Q 047556 747 LYENQ-NLEALSLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGG-K-RFPSWIGDPSYSKMEVLILENCENC- 822 (1175)
Q Consensus 747 l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~-~~p~~~~~~~l~~L~~L~L~~~~~~- 822 (1175)
+..++ +|+.|+++.+.. ..........+..+++|+.|++++|.. + ..+..+.. +++|+.|++++|...
T Consensus 190 ~~~l~~~L~~L~l~~~~~------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRK------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--LNYLQHLSLSRCYDII 261 (336)
T ss_dssp HHHSCTTCCEEECCSCGG------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--CTTCCEEECTTCTTCC
T ss_pred HHhcccCCCEEEeCCCcc------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC--CCCCCEeeCCCCCCCC
Confidence 44455 666666654320 000112222334467777777777762 2 33444443 677777777777521
Q ss_pred CCCCCCcCCCCCccEEeeccC
Q 047556 823 TYLPSTVLWSSSLKMLEIHNC 843 (1175)
Q Consensus 823 ~~lp~~~~~~~~L~~L~L~~~ 843 (1175)
......+..+++|+.|++++|
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhcCCCCCEEeccCc
Confidence 111112344577777777776
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=1.1e-12 Score=134.48 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=79.3
Q ss_pred hcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCcee
Q 047556 598 SKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHL 677 (1175)
Q Consensus 598 ~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 677 (1175)
..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|......|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45677888888888888776 4788888888888888776654 67788888888888884444467778888888888
Q ss_pred eecCccccccCCccCCCCCCccccCceee
Q 047556 678 DITGAYLIKEMPFGMKELKNLQALSNFIV 706 (1175)
Q Consensus 678 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~ 706 (1175)
++++|.+....|..++.+++|+.|++..+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 88888765556666777777777655443
No 103
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=5.7e-11 Score=136.25 Aligned_cols=293 Identities=14% Similarity=0.006 Sum_probs=178.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc----cc-cceEEEEEeCCCC-CHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET----FK-FDIKAWVCVSEDF-DVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~~-f~~~~wv~~s~~~-~~~ 255 (1175)
..++||+.+++++..++...... ...+.+.|+|++|+|||++|+.+++...... .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN--EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT--CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 57999999999999887652111 3346899999999999999999998642210 01 3356788877766 888
Q ss_pred HHHHHHHHHhcCCC-C-CccchHHHHHHHHHHhcCccEEEEEecCccCCccc-HHH-HhcccCCCCCCcEEEEecCChhh
Q 047556 256 SISRAILESITYSS-C-DLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGL-WED-LKAPLMGAAPNSKIVVTTRHSHV 331 (1175)
Q Consensus 256 ~~~~~il~~l~~~~-~-~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~-~~~-l~~~l~~~~~gs~iivTtr~~~v 331 (1175)
.++..++.++.... . ...........+.+.+..++.+|||||++.-.... .+. +...+... .+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 88899888883221 1 12234555667777777766699999996522111 122 22222222 67889999987532
Q ss_pred hhhc------CCCCeeeCCCCChhhhHHHHHhhhccC-CCCCcchhHHHHHHHHHHhcC---CchH-HHHHHHHHh--c-
Q 047556 332 ASTM------EPIQQYNLRCLSDEDCWSLFMMHAFVS-RDLTAQQISDLFRDKVVGKCR---GLPL-AAKALGGLL--R- 397 (1175)
Q Consensus 332 ~~~~------~~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~l--~- 397 (1175)
...+ .-...+.+.+++.++..+++...+... .....+ .+..+.|++.++ |.|. |+..+-... .
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1111 112389999999999999999875311 111111 223456777777 8886 444433322 1
Q ss_pred --CC-CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhhhhhhhhccCCCCcccChhHHHHHHHHccCccccccCC
Q 047556 398 --SK-RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLKRCFSYCAIFPKDYDFEEKELVFLWMAEGIIQESRNNK 474 (1175)
Q Consensus 398 --~~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 474 (1175)
.. +.+.+..++.... ...+.-+++.|+++.+..+..++....+.++. +... -+++.+ .. .
T Consensus 254 ~~~~i~~~~v~~~~~~~~---------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~--~~~~~~-g~---~- 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE---------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYT--DLCNKF-KQ---K- 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH---------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHH--HHHHHT-TC---C-
T ss_pred CCCccCHHHHHHHHHHHh---------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHH--HHHHHc-CC---C-
Confidence 12 6777777765421 23566778899988888777776611101111 1111 122211 00 0
Q ss_pred CCHHHHHHHHHHHHHhCCCcccc
Q 047556 475 KQPEVLGREYFHDLLSRSILQPS 497 (1175)
Q Consensus 475 ~~~~~~~~~~~~~L~~~sll~~~ 497 (1175)
.........++..|...+++...
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 22345567889999999999874
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.32 E-value=8.9e-11 Score=134.95 Aligned_cols=297 Identities=13% Similarity=-0.007 Sum_probs=179.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
..++||+.+++++..++...... ...+.+.|+|++|+||||+|+.+++...... ..-...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG--EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS--CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 57999999999999988543111 3346789999999999999999998542210 002346788888888899999
Q ss_pred HHHHHHhcCCCCC-ccchHHHHHHHHHHh--cCccEEEEEecCccCCcc--cHHHHh---cccCCC--CCCcEEEEecCC
Q 047556 259 RAILESITYSSCD-LKALNEVQVQLKKAV--DGKKIFLVLDDVWNEDYG--LWEDLK---APLMGA--APNSKIVVTTRH 328 (1175)
Q Consensus 259 ~~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~~~--~~~~l~---~~l~~~--~~gs~iivTtr~ 328 (1175)
..++.+++..... .....+....+.+.+ .+++.+||+|+++.-... ..+.+. ...... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 9999999765432 223445555666665 456899999999642211 122222 222111 346678888876
Q ss_pred hhhhhhc-----C--CCCeeeCCCCChhhhHHHHHhhhccC-CCCCcchhHHHHHHHHHHhcC---CchH-HHHHHHHHh
Q 047556 329 SHVASTM-----E--PIQQYNLRCLSDEDCWSLFMMHAFVS-RDLTAQQISDLFRDKVVGKCR---GLPL-AAKALGGLL 396 (1175)
Q Consensus 329 ~~v~~~~-----~--~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~l 396 (1175)
......+ . ....+.+.+++.++..+++...+... .....++ +..+.+++.++ |.|- ++..+..+.
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5322111 1 11478999999999999998775320 1111111 23456777887 9993 333333222
Q ss_pred c-----C--C-CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhhhhhhhhc-cCCCCcccChhHHHHHHH--Hcc
Q 047556 397 R-----S--K-RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLKRCFSYCA-IFPKDYDFEEKELVFLWM--AEG 465 (1175)
Q Consensus 397 ~-----~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a-~fp~~~~i~~~~li~~w~--a~g 465 (1175)
. + . +.+.+..++... ....+.-++..|+++.+..+..++ ++.....+....+.+... ++.
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEI---------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 1 1 1 566666666542 123455677899998888777666 443222444443333221 111
Q ss_pred CccccccCCCCHHHHHHHHHHHHHhCCCcccc
Q 047556 466 IIQESRNNKKQPEVLGREYFHDLLSRSILQPS 497 (1175)
Q Consensus 466 ~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 497 (1175)
. . ........+..++.+|...+++...
T Consensus 325 ~-~----~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 325 L-G----LEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp T-T----CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred c-C----CCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 0 0022345677889999999998874
No 105
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.32 E-value=1.1e-10 Score=134.34 Aligned_cols=297 Identities=13% Similarity=0.046 Sum_probs=184.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
+.++||+.+++++..++.....+..+..+.+.|+|++|+||||||+.+++...... -..++|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCccCCCHHHHHHHH
Confidence 57999999999999988652111102334899999999999999999998643210 1246788888888888999999
Q ss_pred HHHhcCCCCC-ccchHHHHHHHHHHhc--CccEEEEEecCccCCcccHHHHhcccCCCC----CCcEEEEecCChhhhhh
Q 047556 262 LESITYSSCD-LKALNEVQVQLKKAVD--GKKIFLVLDDVWNEDYGLWEDLKAPLMGAA----PNSKIVVTTRHSHVAST 334 (1175)
Q Consensus 262 l~~l~~~~~~-~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~~ 334 (1175)
+..++..... ..........+.+.+. +++.+||+|+++.-+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9988764332 2234445555555543 668999999997765555555555443221 46778888877644332
Q ss_pred cC-------CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhc---------CCchHHHHHHHHH-hc
Q 047556 335 ME-------PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKC---------RGLPLAAKALGGL-LR 397 (1175)
Q Consensus 335 ~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPlai~~~~~~-l~ 397 (1175)
+. ....+.+.+++.++..+++...+..... ......+....|++.+ +|.|-.+..+... ..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 22 1247999999999999999876532110 0111234567788888 7887544433222 21
Q ss_pred -----CC---CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhhhhhhhhccCC---CCcccChhHHHHHHHH---
Q 047556 398 -----SK---RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLKRCFSYCAIFP---KDYDFEEKELVFLWMA--- 463 (1175)
Q Consensus 398 -----~~---~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp---~~~~i~~~~li~~w~a--- 463 (1175)
+. +.+....+...... .. +.-.+..|+++.+.++..++.+. .+..+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~-----~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLF-----GI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSC-----CC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhh-----hh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 11 44444444433211 11 23345778888888887777653 2224555555554432
Q ss_pred -ccCccccccCCCCHHHHHHHHHHHHHhCCCccccC
Q 047556 464 -EGIIQESRNNKKQPEVLGREYFHDLLSRSILQPSS 498 (1175)
Q Consensus 464 -~g~i~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 498 (1175)
.|.. .........++.+|...++|....
T Consensus 324 ~~~~~-------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 324 EYGER-------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HTTCC-------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HcCCC-------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 1211 112345678899999999998743
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=2e-13 Score=156.82 Aligned_cols=247 Identities=16% Similarity=0.093 Sum_probs=150.2
Q ss_pred HhhhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCC---CCc-------cCCc
Q 047556 555 EVMHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELP---KGS-------MSGW 624 (1175)
Q Consensus 555 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~---~~~-------~~~l 624 (1175)
..+..+++|+.|.+.++... ......+...+..+++|++|+|++|.+..+. +.. +..+
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~------------~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIG------------TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp HHHHHCSCCCEEECTTSEEC------------HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred HHHhcCCCccEEECCCCCCC------------HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 45567788888877654310 0012234456788999999999998655432 122 3788
Q ss_pred ccccEEEeccccccc-----ccccccCcccccEEeccCccccc----cCchhhhcc---------CCCceeeecCcccc-
Q 047556 625 KHLRYLNLSHTWIRN-----LPKSTCSLINLQILLLRGCYYLL----KLPSKMRKL---------INLRHLDITGAYLI- 685 (1175)
Q Consensus 625 ~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~~~- 685 (1175)
++|++|+|++|.+.. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|.+.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 999999999999886 78889999999999999995432 234445555 89999999999854
Q ss_pred ccCC---ccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccccccc
Q 047556 686 KEMP---FGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQWGS 762 (1175)
Q Consensus 686 ~~~p---~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 762 (1175)
..+| ..+..+++|+.|++..+...... +. ......+..+++|+.|+++++.
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g--~~------------------------~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEG--IE------------------------HLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHH--HH------------------------HHHHTTGGGCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhH--HH------------------------HHHHHHhhcCCCccEEECcCCC
Confidence 3344 34566777777766655332100 00 0000123344555566554433
Q ss_pred ccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCC-----CCCCCCCCCCCccEEEEeCCCCCC----CCCCCc-CCC
Q 047556 763 QFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRF-----PSWIGDPSYSKMEVLILENCENCT----YLPSTV-LWS 832 (1175)
Q Consensus 763 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~----~lp~~~-~~~ 832 (1175)
.. ..........+..+++|+.|++++|..... |.++....+++|+.|+|++|.+.. .+|..+ ..+
T Consensus 228 l~-----~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 228 FT-----HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp CH-----HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred CC-----cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 20 000122334455667777777777665432 333311126777777777777765 355444 335
Q ss_pred CCccEEeeccCc
Q 047556 833 SSLKMLEIHNCK 844 (1175)
Q Consensus 833 ~~L~~L~L~~~~ 844 (1175)
++|+.|+++++.
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 777777777754
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.32 E-value=2e-13 Score=153.78 Aligned_cols=135 Identities=17% Similarity=0.160 Sum_probs=104.5
Q ss_pred hHhhhcc--cceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEeccccccc--CCCCccCCcccccE
Q 047556 554 LEVMHEV--QHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITE--LPKGSMSGWKHLRY 629 (1175)
Q Consensus 554 ~~~~~~~--~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~--l~~~~~~~l~~L~~ 629 (1175)
...+..+ ++++.+.+.++.... ..+. +..+++|++|+|++|.++. ++ ..+..+++|++
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~----------------~~~~-~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~ 122 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQ----------------PLAE-HFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQN 122 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECS----------------CCCS-CCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSE
T ss_pred HHHHHhhhhccceEEEcCCccccc----------------cchh-hccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCE
Confidence 5556667 777777765543111 1111 4578999999999999875 44 67899999999
Q ss_pred EEecccccc-cccccccCcccccEEeccCccccc--cCchhhhccCCCceeeecCc-ccccc-CCccCCCCC-CccccCc
Q 047556 630 LNLSHTWIR-NLPKSTCSLINLQILLLRGCYYLL--KLPSKMRKLINLRHLDITGA-YLIKE-MPFGMKELK-NLQALSN 703 (1175)
Q Consensus 630 L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~-~~~~~-~p~~~~~L~-~L~~L~~ 703 (1175)
|+|++|.+. ..|..++++++|++|+|++|..+. .+|..+.++++|++|++++| .+... ++..+..++ +|+.|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999988 678889999999999999996565 47888999999999999999 64332 566677788 8888877
Q ss_pred eee
Q 047556 704 FIV 706 (1175)
Q Consensus 704 ~~~ 706 (1175)
..+
T Consensus 203 ~~~ 205 (336)
T 2ast_B 203 SGY 205 (336)
T ss_dssp CSC
T ss_pred CCC
Confidence 665
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=2.7e-12 Score=153.98 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=105.1
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCce
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRH 676 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 676 (1175)
+..+++|+.|+|++|.+..++ .+..+++|++|+|++|.+..+|. +..|++|+.|+|++| .+..+| .+..+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCE
Confidence 345677777778777777775 47777788888888877777766 777778888888777 566665 4777777888
Q ss_pred eeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccc
Q 047556 677 LDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEAL 756 (1175)
Q Consensus 677 L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 756 (1175)
|+|++|. +..+| .+..|++|+.|++..+.....+ . +..+++|+.|
T Consensus 114 L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~--------------------------------l~~l~~L~~L 158 (605)
T 1m9s_A 114 LSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDIT-V--------------------------------LSRLTKLDTL 158 (605)
T ss_dssp EECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG-G--------------------------------GGSCTTCSEE
T ss_pred EEecCCC-CCCCc-cccCCCccCEEECCCCccCCch-h--------------------------------hcccCCCCEE
Confidence 8887777 33333 4666666666655544322211 1 1222333344
Q ss_pred ccccccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEeCCCCCC
Q 047556 757 SLQWGSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKMEVLILENCENCT 823 (1175)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 823 (1175)
+|+.+..... ..+..+++|+.|+|++|.+..+|. +. .+++|+.|+|++|.+..
T Consensus 159 ~Ls~N~l~~~-----------~~l~~l~~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 159 SLEDNQISDI-----------VPLAGLTKLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQECLN 211 (605)
T ss_dssp ECCSSCCCCC-----------GGGTTCTTCCEEECCSSCCCBCGG-GT--TCTTCSEEECCSEEEEC
T ss_pred ECcCCcCCCc-----------hhhccCCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEccCCcCcC
Confidence 3333221100 004445667777777776665543 33 26777777777776644
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=4e-12 Score=131.65 Aligned_cols=105 Identities=26% Similarity=0.375 Sum_probs=80.9
Q ss_pred CCCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCchh-hhccCCCcee
Q 047556 600 CRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHL 677 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 677 (1175)
.++|++|+|++|.++.+++..|.++++|++|++++|.++.+|.. +..+++|++|+|++| .+..+|.. +.++++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 45788899999988888877788889999999999988888665 678889999999988 55566544 6888899999
Q ss_pred eecCccccccCCcc-CCCCCCccccCceee
Q 047556 678 DITGAYLIKEMPFG-MKELKNLQALSNFIV 706 (1175)
Q Consensus 678 ~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~ 706 (1175)
++++|.+ ..+|.. +..+++|+.|++..+
T Consensus 106 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 106 ALNTNQL-QSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp ECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred EcCCCcC-cccCHhHhccCCcCCEEECCCC
Confidence 9988884 444433 667777777755544
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=9.2e-12 Score=147.45 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=127.9
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeec
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDIT 680 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 680 (1175)
.+|+.|+|++|.++++|. .+ +++|++|+|++|.|+.+| ..+++|++|+|++| .+..+|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~-~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPD-NL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCS-CC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCH-hH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 489999999999999984 44 378999999999999999 56899999999999 6777988 665 99999999
Q ss_pred CccccccCCccCCCCCCccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccccccccccccc
Q 047556 681 GAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYENQNLEALSLQW 760 (1175)
Q Consensus 681 ~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 760 (1175)
+|. +..+|. .+++|+.|++..+.....+. .+ ++|+.|+++.
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l--------------------------------~~L~~L~Ls~ 169 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINADNNQLTMLPE---LP--------------------------------TSLEVLSVRN 169 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSCCSCCCC---CC--------------------------------TTCCEEECCS
T ss_pred CCc-CCCCCC---cCccccEEeCCCCccCcCCC---cC--------------------------------CCcCEEECCC
Confidence 999 455886 67888888877765444331 12 2444455544
Q ss_pred ccccCCCCchhHHHHHHhcCCCCCCccEEEEeccCCCCCCCCCCCCCCCCc-------cEEEEeCCCCCCCCCCCcCCCC
Q 047556 761 GSQFDISRNEDKEELVLGMLKPCTNIKKLTINGYGGKRFPSWIGDPSYSKM-------EVLILENCENCTYLPSTVLWSS 833 (1175)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~lp~~~~~~~ 833 (1175)
+....+. . +. ++|+.|++++|.+..+|. +.. +| +.|+|++|.+. .+|..+..++
T Consensus 170 N~L~~lp----------~-l~--~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 170 NQLTFLP----------E-LP--ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp SCCSCCC----------C-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred CCCCCcc----------h-hh--CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence 3321110 1 22 678888888888888887 432 55 88888888875 4666555568
Q ss_pred CccEEeeccCc
Q 047556 834 SLKMLEIHNCK 844 (1175)
Q Consensus 834 ~L~~L~L~~~~ 844 (1175)
+|+.|+|++++
T Consensus 231 ~L~~L~L~~N~ 241 (571)
T 3cvr_A 231 PTCTIILEDNP 241 (571)
T ss_dssp TTEEEECCSSS
T ss_pred CCCEEEeeCCc
Confidence 88888888754
No 111
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=3e-11 Score=138.85 Aligned_cols=296 Identities=14% Similarity=0.068 Sum_probs=175.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..|+||+.+++.+.+++...... ...+.+.|+|++|+||||||+.+++........-...+|+++....+...++..+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~--~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE--EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT--CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 57999999999999988742111 3346899999999999999999998543210002356788877767778888888
Q ss_pred HHHhcCCCCC-ccchHHHHHHHHHHhc--CccEEEEEecCccCC----cccHHHHhcccCC-CCCCcEEEEecCChhhhh
Q 047556 262 LESITYSSCD-LKALNEVQVQLKKAVD--GKKIFLVLDDVWNED----YGLWEDLKAPLMG-AAPNSKIVVTTRHSHVAS 333 (1175)
Q Consensus 262 l~~l~~~~~~-~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 333 (1175)
+.+++..... .....+....+.+.+. +++.+||+|+++.-. ...+..+...+.. ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 8877654321 1234444555555553 458999999996421 2334444333321 234567788887665432
Q ss_pred hcC-------CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcC---CchHHH-HHHHHHhc-----
Q 047556 334 TME-------PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCR---GLPLAA-KALGGLLR----- 397 (1175)
Q Consensus 334 ~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPlai-~~~~~~l~----- 397 (1175)
.+. ....+.+.+++.++..+++...+..... ......++.+.+++.++ |.|..+ ..+.....
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 221 1147999999999999999876421110 01112334566777777 998844 33322221
Q ss_pred C--C-CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhhhhhhhhccCCC-C-cccChhHHHHHH--HHc--cCcc
Q 047556 398 S--K-RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLKRCFSYCAIFPK-D-YDFEEKELVFLW--MAE--GIIQ 468 (1175)
Q Consensus 398 ~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~-~-~~i~~~~li~~w--~a~--g~i~ 468 (1175)
+ . +.+.+..++... ....+.-.+..++++.+..+..++...+ + ..+....+.+.. +++ | +.
T Consensus 256 ~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~ 325 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEI---------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VE 325 (386)
T ss_dssp TCSSCCHHHHHHHHHHH---------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CC
T ss_pred CCCccCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CC
Confidence 1 1 556666555432 1234566678899888887777764322 1 123333332211 111 2 11
Q ss_pred ccccCCCCHHHHHHHHHHHHHhCCCcccc
Q 047556 469 ESRNNKKQPEVLGREYFHDLLSRSILQPS 497 (1175)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 497 (1175)
.........+++.|...++|...
T Consensus 326 ------~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 ------AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp ------CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred ------CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12234567789999999999763
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=1.8e-13 Score=155.31 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=66.8
Q ss_pred hHHHhhhcCCCccEEEecccccccCCC----CccCCcc-cccEEEecccccccc-cccccCc-----ccccEEeccCccc
Q 047556 592 VFSNLLSKCRKLRVLSLSRSYITELPK----GSMSGWK-HLRYLNLSHTWIRNL-PKSTCSL-----INLQILLLRGCYY 660 (1175)
Q Consensus 592 ~~~~~~~~~~~Lr~L~Ls~~~i~~l~~----~~~~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~~ 660 (1175)
..+.++...++|++|+|++|.++..+. ..+..++ +|++|+|++|.+... +..+..+ ++|++|+|++|..
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 355666666778888888888888776 5667777 888888888888755 5556554 8888888888843
Q ss_pred cccCchhhhc----c-CCCceeeecCccc
Q 047556 661 LLKLPSKMRK----L-INLRHLDITGAYL 684 (1175)
Q Consensus 661 l~~lp~~i~~----L-~~L~~L~l~~~~~ 684 (1175)
....+..+.. + ++|++|++++|.+
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 3344444433 3 7888888888873
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=2.1e-11 Score=144.33 Aligned_cols=176 Identities=22% Similarity=0.321 Sum_probs=119.5
Q ss_pred CcCeEEeecCCCCCcCCCCCCCcCccceEEeecCCCCCccCCCCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcc
Q 047556 907 TLKRLGIRRCPELTSLSPGIRLPEALEQLYIWDCQKLESIPDGLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEK 986 (1175)
Q Consensus 907 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~ 986 (1175)
+|+.|++++|. ++.+|..+ +++|+.|++++|... .+|..+++|+.|++++| .++.+|. ++.+|+.|++++|.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N-~l~~ip~--l~~~L~~L~Ls~N~- 131 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALI-SLPELPASLEYLDACDN-RLSTLPE--LPASLKHLDVDNNQ- 131 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCc-ccccccCCCCEEEccCC-CCCCcch--hhcCCCEEECCCCc-
Confidence 57777777764 44466544 367888888777543 56655677777777776 5555655 44477788887764
Q ss_pred cccCccccCCCCcccEEEeeCCCCCCCCCCCCCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCcccccc
Q 047556 987 LEALPNDLHKLNSLEHLYLQRCPSIVRFPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECF 1066 (1175)
Q Consensus 987 l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~ 1066 (1175)
++.+|. .+++|+.|++++| .++.+|. .+++|++|++++|.+..++ . |. ++|+.|++++|. +..+
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp----~-l~--~~L~~L~Ls~N~---L~~l 195 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTFLP----E-LP--ESLEALDVSTNL---LESL 195 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCC----C-CC--TTCCEEECCSSC---CSSC
T ss_pred CCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCCcc----h-hh--CCCCEEECcCCC---CCch
Confidence 455766 5788888888888 6677776 5678888888877665543 2 33 788888888875 5566
Q ss_pred chhhhhccCCCcc-------cceeecCCcCCcccCcCCCCCCCCCCceeccCCCC
Q 047556 1067 PDEEMRMMLPTSL-------CFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPN 1114 (1175)
Q Consensus 1067 ~~~~~~~~~~~sL-------~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 1114 (1175)
|. . +.+| +.|++++ |.++.+| ..+..+++|+.|+|++|+.
T Consensus 196 p~-~-----~~~L~~~~~~L~~L~Ls~-N~l~~lp-~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 196 PA-V-----PVRNHHSEETEIFFRCRE-NRITHIP-ENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CC-C-----C--------CCEEEECCS-SCCCCCC-GGGGGSCTTEEEECCSSSC
T ss_pred hh-H-----HHhhhcccccceEEecCC-CcceecC-HHHhcCCCCCEEEeeCCcC
Confidence 65 1 1255 8888888 6788887 4455688888888888653
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=3e-12 Score=137.45 Aligned_cols=80 Identities=23% Similarity=0.208 Sum_probs=38.8
Q ss_pred hcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCcee
Q 047556 598 SKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHL 677 (1175)
Q Consensus 598 ~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 677 (1175)
..+++|++|++++|.++.++ .+..+++|++|+|++|.|..+|. +.++++|++|+|++| .+..+|.. .. ++|++|
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-ACLSRL 111 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-SSCCEE
T ss_pred hhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-CcccEE
Confidence 34455555555555555444 34445555555555555554444 455555555555554 34444432 12 445555
Q ss_pred eecCcc
Q 047556 678 DITGAY 683 (1175)
Q Consensus 678 ~l~~~~ 683 (1175)
++++|.
T Consensus 112 ~L~~N~ 117 (263)
T 1xeu_A 112 FLDNNE 117 (263)
T ss_dssp ECCSSC
T ss_pred EccCCc
Confidence 555544
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=1e-11 Score=130.26 Aligned_cols=112 Identities=24% Similarity=0.349 Sum_probs=86.0
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCchhhhccC
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPSKMRKLI 672 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 672 (1175)
+..|..+++|++|+|++|.++.+++..|..+++|++|+|++|.|+.+|.. +..+++|++|+|++| .+..+|..+..++
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 135 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLT 135 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCT
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCC
Confidence 44567788888888888888888877778888888888888888877654 577888888888888 6678888888888
Q ss_pred CCceeeecCccccccCC-ccCCCCCCccccCceeec
Q 047556 673 NLRHLDITGAYLIKEMP-FGMKELKNLQALSNFIVG 707 (1175)
Q Consensus 673 ~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~ 707 (1175)
+|++|++++|.+ ..+| ..+..+++|+.|++..+.
T Consensus 136 ~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 136 HLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCC
Confidence 888888888874 4454 447777888877766554
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=1.1e-11 Score=126.77 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=92.9
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccc-ccccccCcccccEEeccCccccccCchhhhccCCCc
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRN-LPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLR 675 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 675 (1175)
+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. .|..++++++|++|+|++|......|..++.+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 677888999999988777664 68888889999999888885 677888889999999998855555777888889999
Q ss_pred eeeecCccccccCCccCCCCCCccccCceeeccCCCccCccccccccc
Q 047556 676 HLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTF 723 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~ 723 (1175)
+|++++|..+..+| .+..+++|+.|++..+.....+ .+..+++|+.
T Consensus 140 ~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 140 SIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQ 185 (197)
T ss_dssp EEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCE
T ss_pred EEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCE
Confidence 99998887566666 6788888888877666544433 3344444433
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=1.9e-11 Score=131.19 Aligned_cols=100 Identities=18% Similarity=0.130 Sum_probs=79.4
Q ss_pred cCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceee
Q 047556 599 KCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLD 678 (1175)
Q Consensus 599 ~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 678 (1175)
.+..+..++++++.++.++ .+..+.+|++|++++|.++.+| .+..+++|++|+|++| .+..+|. +.++++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEE
Confidence 4556777788888888876 5788899999999999999888 7888999999999998 6777777 88999999999
Q ss_pred ecCccccccCCccCCCCCCccccCceee
Q 047556 679 ITGAYLIKEMPFGMKELKNLQALSNFIV 706 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~~L~~~~~ 706 (1175)
+++|. +..+|.. .. ++|+.|++..+
T Consensus 92 L~~N~-l~~l~~~-~~-~~L~~L~L~~N 116 (263)
T 1xeu_A 92 VNRNR-LKNLNGI-PS-ACLSRLFLDNN 116 (263)
T ss_dssp CCSSC-CSCCTTC-CC-SSCCEEECCSS
T ss_pred CCCCc-cCCcCcc-cc-CcccEEEccCC
Confidence 99998 4556543 22 67777765554
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.22 E-value=4.8e-11 Score=124.23 Aligned_cols=96 Identities=21% Similarity=0.278 Sum_probs=61.1
Q ss_pred cEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchhhhccCCCceeeecCc
Q 047556 604 RVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGA 682 (1175)
Q Consensus 604 r~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 682 (1175)
+.++++++.++.+| ..+. .+|++|+|++|.|+.+|. .|.++++|++|+|++|......|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP-~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCC-SSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCC-CccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46777777777777 3333 567777777777777654 5777777777777777433333666777777777777777
Q ss_pred cccccCCcc-CCCCCCccccCc
Q 047556 683 YLIKEMPFG-MKELKNLQALSN 703 (1175)
Q Consensus 683 ~~~~~~p~~-~~~L~~L~~L~~ 703 (1175)
. +..+|.. +..+++|+.|++
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEEC
T ss_pred c-CCccCHhHccCCCCCCEEEC
Confidence 6 3344433 344555554443
No 119
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=3.9e-11 Score=131.06 Aligned_cols=171 Identities=18% Similarity=0.147 Sum_probs=117.4
Q ss_pred CcCccceEEeecCCCCCccCC--CCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEe
Q 047556 928 LPEALEQLYIWDCQKLESIPD--GLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYL 1005 (1175)
Q Consensus 928 ~~~~L~~L~l~~~~~l~~~p~--~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l 1005 (1175)
.+++|+.|++++|.. ..++. .+++|+.|++++| .++.++......+|+.|++++|. ++.+| .+..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEEC
Confidence 567899999999864 33443 3578888888876 45555443344678888888774 44454 3778888888888
Q ss_pred eCCCCCCCCCCCCCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeec
Q 047556 1006 QRCPSIVRFPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNII 1085 (1175)
Q Consensus 1006 ~~c~~l~~lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~ 1085 (1175)
++| .++.++....+++|+.|++++|....+. .+..+++|+.|++++|. +..++. +..+++|+.|+++
T Consensus 120 ~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~---l~~~~~----l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 120 EHN-GISDINGLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQ---ISDIVP----LAGLTKLQNLYLS 186 (291)
T ss_dssp TTS-CCCCCGGGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSC---CCCCGG----GTTCTTCCEEECC
T ss_pred CCC-cCCCChhhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCc---cccchh----hcCCCccCEEECC
Confidence 888 6666655555678888888777766552 46677888888888875 444443 1355778888888
Q ss_pred CCcCCcccCcCCCCCCCCCCceeccCCCCCCcCC
Q 047556 1086 GFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFP 1119 (1175)
Q Consensus 1086 ~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp 1119 (1175)
+ |.++.++ .+..+++|+.|++++|+ +...|
T Consensus 187 ~-N~i~~l~--~l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 187 K-NHISDLR--ALAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp S-SCCCBCG--GGTTCTTCSEEEEEEEE-EECCC
T ss_pred C-CcCCCCh--hhccCCCCCEEECcCCc-ccCCc
Confidence 7 5777775 37778888888888743 43333
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=1.8e-11 Score=121.74 Aligned_cols=108 Identities=24% Similarity=0.246 Sum_probs=66.8
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccc-ccccccCcccccEEeccCccccccCc--hhhhccCC
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRN-LPKSTCSLINLQILLLRGCYYLLKLP--SKMRKLIN 673 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~ 673 (1175)
+..+++|++|+|++|.++.+ ..+..+++|++|+|++|.+.. +|..+.++++|++|+|++| .+..+| ..+..+++
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLEC 121 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSC
T ss_pred HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCC
Confidence 45566666666666666665 456666666666666666665 5555555666666666666 555554 45666666
Q ss_pred CceeeecCccccccCCc----cCCCCCCccccCceeecc
Q 047556 674 LRHLDITGAYLIKEMPF----GMKELKNLQALSNFIVGT 708 (1175)
Q Consensus 674 L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~~~~~~~ 708 (1175)
|++|++++|. +..+|. .+..+++|+.|++..+..
T Consensus 122 L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 122 LKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6666666666 334443 456666666666655543
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=1.9e-11 Score=127.24 Aligned_cols=111 Identities=28% Similarity=0.281 Sum_probs=68.1
Q ss_pred hhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCchhhhccCCC
Q 047556 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPSKMRKLINL 674 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 674 (1175)
.|..+++|++|+|++|.++.+++..|.++++|++|+|++|.|+.+|.. +.++++|++|+|++|......|..|..+++|
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 455666667777776666666556666666677777776666666554 4566667777776663333334556666667
Q ss_pred ceeeecCccccccCCccCCCCCCccccCceee
Q 047556 675 RHLDITGAYLIKEMPFGMKELKNLQALSNFIV 706 (1175)
Q Consensus 675 ~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~ 706 (1175)
++|++++|.+....+..+..+++|+.|++..+
T Consensus 131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 77777666633333333666666666655544
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=2.3e-12 Score=146.24 Aligned_cols=240 Identities=10% Similarity=0.022 Sum_probs=142.4
Q ss_pred hhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCC-CccEEEecccccccCCCCccCCc-----ccccEE
Q 047556 557 MHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCR-KLRVLSLSRSYITELPKGSMSGW-----KHLRYL 630 (1175)
Q Consensus 557 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Lr~L~Ls~~~i~~l~~~~~~~l-----~~L~~L 630 (1175)
+...++|+.|.+.++... ......+...|..++ +|++|+|++|.++...+..+..+ ++|++|
T Consensus 18 ~~~~~~L~~L~Ls~n~l~------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLY------------SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp HTSCTTCCEEECTTSCGG------------GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HhCCCCceEEEccCCCCC------------hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence 334455888887765421 111223346788888 99999999999998876677775 899999
Q ss_pred Eeccccccccc-cc----ccCc-ccccEEeccCccccccC-chhhh----c-cCCCceeeecCccccc----cCCccCCC
Q 047556 631 NLSHTWIRNLP-KS----TCSL-INLQILLLRGCYYLLKL-PSKMR----K-LINLRHLDITGAYLIK----EMPFGMKE 694 (1175)
Q Consensus 631 ~L~~~~i~~lp-~~----i~~L-~~L~~L~L~~~~~l~~l-p~~i~----~-L~~L~~L~l~~~~~~~----~~p~~~~~ 694 (1175)
+|++|.+...+ .. +..+ ++|++|+|++|. +... +..+. . .++|++|++++|.+.. .++..+..
T Consensus 86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence 99999998654 33 4455 899999999995 5444 33443 3 3699999999998543 22333344
Q ss_pred CC-CccccCceeeccCCCccCccccccccccccccccCCccCCCChhhcchhhhccc-ccccccccccccccCCCCchhH
Q 047556 695 LK-NLQALSNFIVGTGTRSSGLKDLKSLTFLSGELCISRLENVTISREASEEILYEN-QNLEALSLQWGSQFDISRNEDK 772 (1175)
Q Consensus 695 L~-~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~ 772 (1175)
+. +|+.|++..+...... .......+... .+|+.|+++.+...+...
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~---------------------------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---- 213 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKN---------------------------CAELAKFLASIPASVTSLDLSANLLGLKSY---- 213 (362)
T ss_dssp SCTTCCEEECTTSCGGGSC---------------------------HHHHHHHHHTSCTTCCEEECTTSCGGGSCH----
T ss_pred CCccccEeeecCCCCchhh---------------------------HHHHHHHHHhCCCCCCEEECCCCCCChhHH----
Confidence 43 6777765554332211 00111122333 366666666554311110
Q ss_pred HHHHHhcCCC-CCCccEEEEeccCCCCCCC-----CCCCCCCCCccEEEEeCCCCCCC-------CCCCcCCCCCccEEe
Q 047556 773 EELVLGMLKP-CTNIKKLTINGYGGKRFPS-----WIGDPSYSKMEVLILENCENCTY-------LPSTVLWSSSLKMLE 839 (1175)
Q Consensus 773 ~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~-----~~~~~~l~~L~~L~L~~~~~~~~-------lp~~~~~~~~L~~L~ 839 (1175)
......+.. +++|+.|++++|.....+. .+. .+++|+.|++++|.+... ++..+..+++|+.|+
T Consensus 214 -~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~--~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 214 -AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD--SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp -HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT--TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred -HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh--cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 111222222 3578888888776655432 122 367788888887763221 222333446677777
Q ss_pred eccC
Q 047556 840 IHNC 843 (1175)
Q Consensus 840 L~~~ 843 (1175)
++++
T Consensus 291 L~~N 294 (362)
T 3goz_A 291 KNGK 294 (362)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 7664
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=2.6e-11 Score=126.31 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=87.6
Q ss_pred hhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchhhhccCCC
Q 047556 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSKMRKLINL 674 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 674 (1175)
.|..+++|++|+|++|.++.+++..|.++++|++|+|++|.++.+|. .|.++++|++|+|++|......|..+..+++|
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 46778888888888888888887788888888888888888887755 47888888888888884444446778888888
Q ss_pred ceeeecCccccccCCccCCCCCCccccCceeec
Q 047556 675 RHLDITGAYLIKEMPFGMKELKNLQALSNFIVG 707 (1175)
Q Consensus 675 ~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~ 707 (1175)
++|++++|.+....|..+..+++|+.|++..+.
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 888888888555557778888888888776654
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=3.3e-11 Score=119.81 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=95.8
Q ss_pred hcCCCccEEEecccccc--cCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCc
Q 047556 598 SKCRKLRVLSLSRSYIT--ELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLR 675 (1175)
Q Consensus 598 ~~~~~Lr~L~Ls~~~i~--~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 675 (1175)
...++|+.|+|++|.++ .+| ..+..+++|++|++++|.++.+ ..+..+++|++|+|++|.....+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34588999999999998 777 6789999999999999999988 8899999999999999954444888888899999
Q ss_pred eeeecCccccccCC--ccCCCCCCccccCceeeccCCCc
Q 047556 676 HLDITGAYLIKEMP--FGMKELKNLQALSNFIVGTGTRS 712 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p--~~~~~L~~L~~L~~~~~~~~~~~ 712 (1175)
+|++++|. +..+| ..+..+++|+.|++..+.....+
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 99999998 55655 67889999999988777655444
No 125
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.17 E-value=4.3e-10 Score=120.16 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=120.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++||+..++.+..++.... ..+.+.|+|++|+||||+|+.+++...... .+.. ..+... .. ...+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~---~~~~~~---~~-~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA---TPCGVC---DN-CREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCS---SCCSCS---HH-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCC---CCCccc---HH-HHHH
Confidence 469999999999999997642 235889999999999999999987543211 1100 000000 00 0011
Q ss_pred HHHhc-----CCCCCccchHHHHHHHHHH-----hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhh
Q 047556 262 LESIT-----YSSCDLKALNEVQVQLKKA-----VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHV 331 (1175)
Q Consensus 262 l~~l~-----~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 331 (1175)
..... .........+.. ..+.+. ..+++.+||+||++.-+...++.+...+.....+..+|+||+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred hccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 00000 000000111111 122222 2356899999999775556677777766655567888888876542
Q ss_pred h-hh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 047556 332 A-ST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLL 396 (1175)
Q Consensus 332 ~-~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 396 (1175)
. .. ......+.+.+++.++..+++...+...... .+ .+..+.|++.|+|.|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 11 1223679999999999999998876433221 11 2346789999999999988765443
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=2e-11 Score=118.56 Aligned_cols=109 Identities=23% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCCccEEEecccccc--cCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCcee
Q 047556 600 CRKLRVLSLSRSYIT--ELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHL 677 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~--~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 677 (1175)
.++|+.|++++|.++ .+| ..+..+++|++|++++|.++.+ ..++++++|++|+|++|.....+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456777777777776 555 5667777777777777777766 667777777777777773333367666777777777
Q ss_pred eecCccccccCC--ccCCCCCCccccCceeeccCCC
Q 047556 678 DITGAYLIKEMP--FGMKELKNLQALSNFIVGTGTR 711 (1175)
Q Consensus 678 ~l~~~~~~~~~p--~~~~~L~~L~~L~~~~~~~~~~ 711 (1175)
++++|.+ ..+| ..++.+++|+.|++..+.....
T Consensus 94 ~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 94 NLSGNKI-KDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp ECTTSCC-CSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred ECCCCcC-CChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 7777773 3332 5667777777776666544433
No 127
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.16 E-value=9e-11 Score=140.83 Aligned_cols=171 Identities=18% Similarity=0.146 Sum_probs=126.2
Q ss_pred CcCccceEEeecCCCCCccCC--CCCCCCEEeeCCCCCccccccCCCCCCccEEEEccCcccccCccccCCCCcccEEEe
Q 047556 928 LPEALEQLYIWDCQKLESIPD--GLHNVQRIDIQRCPSLVSLAERGLPITISSVRIWSCEKLEALPNDLHKLNSLEHLYL 1005 (1175)
Q Consensus 928 ~~~~L~~L~l~~~~~l~~~p~--~~~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l 1005 (1175)
.+++|+.|++++|.. ..+|. .+++|+.|++++| .+..++......+|+.|++++|. +..+| .+..+++|+.|+|
T Consensus 41 ~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 567899999998864 44443 4688999999887 45555544445688999998884 45555 6788899999999
Q ss_pred eCCCCCCCCCCCCCCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeec
Q 047556 1006 QRCPSIVRFPEEGFPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNII 1085 (1175)
Q Consensus 1006 ~~c~~l~~lp~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~ 1085 (1175)
++| .+..++....+++|+.|++++|....+. .+..+++|+.|+|++|. +..+++ +..+++|+.|+|+
T Consensus 117 s~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~---l~~~~~----l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 117 EHN-GISDINGLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQ---ISDIVP----LAGLTKLQNLYLS 183 (605)
T ss_dssp TTS-CCCCCGGGGGCTTCSEEECCSSCCCCCG-----GGGSCTTCSEEECCSSC---CCCCGG----GTTCTTCCEEECC
T ss_pred cCC-CCCCCccccCCCccCEEECCCCccCCch-----hhcccCCCCEEECcCCc---CCCchh----hccCCCCCEEECc
Confidence 998 6677766566788999999888776652 57788899999998876 444544 2456789999998
Q ss_pred CCcCCcccCcCCCCCCCCCCceeccCCCCCCcCC
Q 047556 1086 GFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFP 1119 (1175)
Q Consensus 1086 ~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp 1119 (1175)
+ |.++.++ .+..+++|+.|+|++|+ +...|
T Consensus 184 ~-N~i~~l~--~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 184 K-NHISDLR--ALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp S-SCCCBCG--GGTTCTTCSEEECCSEE-EECCC
T ss_pred C-CCCCCCh--HHccCCCCCEEEccCCc-CcCCc
Confidence 8 5788775 57888899999998854 44443
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=4.7e-11 Score=135.10 Aligned_cols=98 Identities=29% Similarity=0.341 Sum_probs=56.7
Q ss_pred cEEEecccccccCCCCccCCcccccEEEeccccccccccc-cc-CcccccEEeccCccccccCc-hhhhccCCCceeeec
Q 047556 604 RVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TC-SLINLQILLLRGCYYLLKLP-SKMRKLINLRHLDIT 680 (1175)
Q Consensus 604 r~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 680 (1175)
++++++++.++.+|. .+. ..+++|+|++|.|+.+|.. +. ++.+|++|+|++| .+..+| ..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~-~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCS-SCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCc-cCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 466666666666662 332 3466677777766666544 33 6667777777666 444443 446666777777777
Q ss_pred CccccccCCccCCCCCCccccCcee
Q 047556 681 GAYLIKEMPFGMKELKNLQALSNFI 705 (1175)
Q Consensus 681 ~~~~~~~~p~~~~~L~~L~~L~~~~ 705 (1175)
+|.+....+..|..+++|+.|++..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCC
Confidence 6663322233355566666554443
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=6.8e-11 Score=122.28 Aligned_cols=112 Identities=28% Similarity=0.369 Sum_probs=95.6
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCchh-hhcc
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPSK-MRKL 671 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L 671 (1175)
+..|..+++|++|+|++|.++.+++..|..+++|++|+|++|.++.+|.. +.++++|++|+|++| .+..+|.. +.++
T Consensus 45 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 123 (208)
T 2o6s_A 45 NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKL 123 (208)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccC
Confidence 44578899999999999999999977889999999999999999988765 689999999999999 56666654 7899
Q ss_pred CCCceeeecCccccccCCcc-CCCCCCccccCceeec
Q 047556 672 INLRHLDITGAYLIKEMPFG-MKELKNLQALSNFIVG 707 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~ 707 (1175)
++|++|++++|.+. .+|.. +..+++|+.|++..+.
T Consensus 124 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 124 TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCC
Confidence 99999999999854 55544 7889999998777653
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.15 E-value=5.7e-11 Score=124.65 Aligned_cols=122 Identities=27% Similarity=0.329 Sum_probs=101.9
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCchh-hhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 678 (1175)
++|++|+|++|.++.+++..|.++++|++|+|++|.|..+|.. +.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 7899999999999999878999999999999999999999765 689999999999999 66666654 78999999999
Q ss_pred ecCccccccCCccCCCCCCccccCceeeccCCCcc-Ccccccccccc
Q 047556 679 ITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRSS-GLKDLKSLTFL 724 (1175)
Q Consensus 679 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~-~l~~l~~L~~L 724 (1175)
+++|. +..+|..+..+++|+.|++..+.....+. .+..+++|+.|
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 99999 66899999999999999888776555442 23344444433
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=8e-11 Score=122.57 Aligned_cols=123 Identities=20% Similarity=0.184 Sum_probs=99.6
Q ss_pred CCccEEEecccccccCC-CCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccC-chhhhccCCCcee
Q 047556 601 RKLRVLSLSRSYITELP-KGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKL-PSKMRKLINLRHL 677 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~-~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 677 (1175)
..++.|+|++|.++.++ ...|.++++|++|+|++|.|+.+|. .|.++++|++|+|++| .+..+ |..|..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEE
Confidence 45789999999999985 3568999999999999999998866 7999999999999999 45555 4558999999999
Q ss_pred eecCccccccCCccCCCCCCccccCceeeccCCC-ccCcccccccccc
Q 047556 678 DITGAYLIKEMPFGMKELKNLQALSNFIVGTGTR-SSGLKDLKSLTFL 724 (1175)
Q Consensus 678 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L 724 (1175)
++++|.+....|..+..+++|+.|++..+..... +..+..+++|+.|
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 9999996666678899999999998887765554 3344445555444
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=3e-11 Score=117.39 Aligned_cols=107 Identities=24% Similarity=0.297 Sum_probs=92.2
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccc-ccccccCcccccEEeccCccccccCc--hhhhc
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRN-LPKSTCSLINLQILLLRGCYYLLKLP--SKMRK 670 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~ 670 (1175)
+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|++|++++| .+..+| ..++.
T Consensus 35 ~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~ 111 (149)
T 2je0_A 35 EGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKK 111 (149)
T ss_dssp CSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGG
T ss_pred HHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhh
Confidence 34567899999999999999988 579999999999999999997 8888888999999999999 677665 78999
Q ss_pred cCCCceeeecCccccccCCc----cCCCCCCccccCce
Q 047556 671 LINLRHLDITGAYLIKEMPF----GMKELKNLQALSNF 704 (1175)
Q Consensus 671 L~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~~~ 704 (1175)
+++|++|++++|. +..+|. .+..+++|+.|++.
T Consensus 112 l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 112 LENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 9999999999998 455554 57788888888653
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.11 E-value=5.2e-11 Score=119.25 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=57.4
Q ss_pred hcCCCccEEEecccccccCCCCccCCcc-cccEEEecccccccccccccCcccccEEeccCccccccCchhh-hccCCCc
Q 047556 598 SKCRKLRVLSLSRSYITELPKGSMSGWK-HLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKM-RKLINLR 675 (1175)
Q Consensus 598 ~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 675 (1175)
..+.+|+.|++++|.++.++ . +..+. +|++|+|++|.++.+ ..+.++++|++|+|++| .+..+|..+ +.+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 34555666666666665554 2 33333 666666666666555 45556666666666665 444444333 5566666
Q ss_pred eeeecCccccccCCc--cCCCCCCccccCceeec
Q 047556 676 HLDITGAYLIKEMPF--GMKELKNLQALSNFIVG 707 (1175)
Q Consensus 676 ~L~l~~~~~~~~~p~--~~~~L~~L~~L~~~~~~ 707 (1175)
+|++++|. +..+|. .+..+++|+.|++..+.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC
Confidence 66666665 344444 45555555555554443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.10 E-value=7e-11 Score=118.32 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=103.9
Q ss_pred hcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccc
Q 047556 558 HEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWI 637 (1175)
Q Consensus 558 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i 637 (1175)
.++.+|+.|.+.++... .++......++|++|+|++|.++.+ ..+..+++|++|+|++|.|
T Consensus 16 ~~~~~L~~L~l~~n~l~-----------------~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-----------------VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp ECTTSCEEEECTTSCCC-----------------SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC
T ss_pred CCcCCceEEEeeCCCCc-----------------hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcc
Confidence 45667787777665321 0122233345999999999999988 4799999999999999999
Q ss_pred ccccccc-cCcccccEEeccCccccccCch--hhhccCCCceeeecCccccccCCcc----CCCCCCccccCceeec
Q 047556 638 RNLPKST-CSLINLQILLLRGCYYLLKLPS--KMRKLINLRHLDITGAYLIKEMPFG----MKELKNLQALSNFIVG 707 (1175)
Q Consensus 638 ~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----~~~L~~L~~L~~~~~~ 707 (1175)
..+|..+ ..+++|++|+|++| .+..+|. .+..+++|++|++++|. +..+|.. +..+++|+.|++..+.
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9998765 89999999999999 7788887 79999999999999999 5577764 7888888888877654
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=9.4e-11 Score=144.65 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=100.2
Q ss_pred hHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhcc
Q 047556 592 VFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKL 671 (1175)
Q Consensus 592 ~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 671 (1175)
.++..|..++.|++|+|++|.+..+| ..+.++.+|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCC
Confidence 45677899999999999999999998 5667999999999999999999999999999999999999 677999999999
Q ss_pred CCCceeeecCccccccCCccCCCCCCccccCceeeccCC
Q 047556 672 INLRHLDITGAYLIKEMPFGMKELKNLQALSNFIVGTGT 710 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~ 710 (1175)
++|++|+|++|. +..+|..|++|++|+.|++..+....
T Consensus 293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCC
Confidence 999999999998 67899999999999999888776543
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.07 E-value=2.4e-09 Score=112.24 Aligned_cols=186 Identities=11% Similarity=0.019 Sum_probs=117.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++||+..++++.+++.... .+.+.|+|++|+|||++|+.+++...... .-...+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccChHHHHHHH
Confidence 468999999999999997642 23489999999999999999987542221 11223444444333332222111
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhh-h-hcCCCC
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVA-S-TMEPIQ 339 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~-~~~~~~ 339 (1175)
..+.... ....+++.+||+||++.-....++.+...+.....+.++|+||+..... . ......
T Consensus 90 -~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 -KEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp -HHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -HHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 1111000 0113678999999997655555666666665555678888888765321 1 112234
Q ss_pred eeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHH
Q 047556 340 QYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALG 393 (1175)
Q Consensus 340 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1175)
.+.+.+++.++..+++...+...+.. . ..+..+.+++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK-I---TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC-B---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 88999999999999998776432221 1 12345678899999998655443
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=8.7e-11 Score=144.93 Aligned_cols=117 Identities=25% Similarity=0.253 Sum_probs=93.4
Q ss_pred EEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeecCcccc
Q 047556 606 LSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITGAYLI 685 (1175)
Q Consensus 606 L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 685 (1175)
++++.|.+. +++..+..+.+|++|+|++|.+..+|..+.++++|++|+|++| .+..+|..|++|++|++|+|++|. +
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-L 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-C
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-C
Confidence 344445555 4458899999999999999999999999999999999999999 677999999999999999999999 4
Q ss_pred ccCCccCCCCCCccccCceeeccCCCccCccccccccccc
Q 047556 686 KEMPFGMKELKNLQALSNFIVGTGTRSSGLKDLKSLTFLS 725 (1175)
Q Consensus 686 ~~~p~~~~~L~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~ 725 (1175)
..+|..|+.|++|+.|++..+.....+..+..+++|+.|.
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred CccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence 5899999999999999999998888887788888888775
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=2.8e-10 Score=128.76 Aligned_cols=111 Identities=19% Similarity=0.130 Sum_probs=81.4
Q ss_pred CCccEEEecccccccCCCCccC-CcccccEEEeccccccccc-ccccCcccccEEeccCccccccCc-hhhhccCCCcee
Q 047556 601 RKLRVLSLSRSYITELPKGSMS-GWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHL 677 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~-~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L 677 (1175)
+.+++|+|++|.++.+++..+. ++.+|++|+|++|.|..+| ..|.++++|++|+|++| .+..+| ..|..+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEE
Confidence 3577888888888887766676 7888888888888888775 45778888888888887 455554 357788888888
Q ss_pred eecCccccccCCccCCCCCCccccCceeeccCCCc
Q 047556 678 DITGAYLIKEMPFGMKELKNLQALSNFIVGTGTRS 712 (1175)
Q Consensus 678 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~ 712 (1175)
+|++|.+....|..|..+++|+.|++..+.....+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 88888755555666778888888877766555444
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=2e-10 Score=137.01 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=92.0
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCCCceeeecC
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITG 681 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 681 (1175)
.|++|+|++|.++.+| . |+.+++|++|+|++|.|+.+|..+++|++|++|+|++| .+..+| .++++++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCc-C-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 5899999999999988 4 89999999999999999999999999999999999998 677788 799999999999999
Q ss_pred ccccccC-CccCCCCCCccccCceeeccCCCc
Q 047556 682 AYLIKEM-PFGMKELKNLQALSNFIVGTGTRS 712 (1175)
Q Consensus 682 ~~~~~~~-p~~~~~L~~L~~L~~~~~~~~~~~ 712 (1175)
|.+.+.. |..++.|++|+.|++..+.....+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 9854443 888999999999988877655544
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=3.9e-10 Score=114.53 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=84.8
Q ss_pred CccEEEecccccccCCCC-ccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchhhhccCCCceeee
Q 047556 602 KLRVLSLSRSYITELPKG-SMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDI 679 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 679 (1175)
+|++|+|++|.++.+++. .|..+++|++|+|++|.|+.+ |..|.++++|++|+|++|......|..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788888988888888753 478888899999998888877 677888888999999888433334455888888999999
Q ss_pred cCccccccCCccCCCCCCccccCceeecc
Q 047556 680 TGAYLIKEMPFGMKELKNLQALSNFIVGT 708 (1175)
Q Consensus 680 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~ 708 (1175)
++|.+.+..|..+..+++|+.|++..+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 88886666677788888888887766543
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=1.1e-11 Score=126.91 Aligned_cols=110 Identities=25% Similarity=0.278 Sum_probs=93.6
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCchhhhccCC
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLPSKMRKLIN 673 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 673 (1175)
+..+..+++|++|+|++|.++.+| .+.++++|++|++++|.+..+|..+..+++|++|+|++| .+..+| .++.+++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC
Confidence 447889999999999999999987 788999999999999999999998888999999999999 677787 5899999
Q ss_pred CceeeecCccccccCCc--cCCCCCCccccCceeecc
Q 047556 674 LRHLDITGAYLIKEMPF--GMKELKNLQALSNFIVGT 708 (1175)
Q Consensus 674 L~~L~l~~~~~~~~~p~--~~~~L~~L~~L~~~~~~~ 708 (1175)
|++|++++|. +..+|. .+..+++|+.|++..+..
T Consensus 117 L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 117 LRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 9999999998 444443 578888888887776654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=8.3e-10 Score=112.00 Aligned_cols=103 Identities=28% Similarity=0.375 Sum_probs=67.1
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccc-ccccCcccccEEeccCccccccC-chhhhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLP-KSTCSLINLQILLLRGCYYLLKL-PSKMRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 678 (1175)
++|+.|+|++|.++.+| ..|.++.+|++|+|++|.|+.++ ..|.++++|++|+|++| .+..+ |..|..+++|++|+
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 46777777777777766 56777777777777777777664 34677777777777777 34444 34567777777777
Q ss_pred ecCccccccCCc-cCCCCCCccccCceee
Q 047556 679 ITGAYLIKEMPF-GMKELKNLQALSNFIV 706 (1175)
Q Consensus 679 l~~~~~~~~~p~-~~~~L~~L~~L~~~~~ 706 (1175)
|++|. +..+|. .+..+++|+.|++..+
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 109 LHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 77776 334444 3666666666655544
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.98 E-value=7.7e-10 Score=112.22 Aligned_cols=87 Identities=30% Similarity=0.382 Sum_probs=45.0
Q ss_pred hhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCch-hhhccCC
Q 047556 596 LLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPS-KMRKLIN 673 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~ 673 (1175)
.|..+++|++|+|++|.++.+++..|.++++|++|+|++|.|+.+|. .|.++++|++|+|++| .+..+|. .+..+++
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 127 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSA 127 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTT
T ss_pred HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCcc
Confidence 44555555555555555555554455555555555555555554433 3555555555555555 3444433 2445555
Q ss_pred CceeeecCcc
Q 047556 674 LRHLDITGAY 683 (1175)
Q Consensus 674 L~~L~l~~~~ 683 (1175)
|++|++++|.
T Consensus 128 L~~L~L~~N~ 137 (193)
T 2wfh_A 128 LSHLAIGANP 137 (193)
T ss_dssp CCEEECCSSC
T ss_pred ccEEEeCCCC
Confidence 5555555554
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.97 E-value=8.7e-10 Score=111.93 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=96.0
Q ss_pred cEEEecccccccCCCCccCCcccccEEEeccccccccccc--ccCcccccEEeccCccccccCchhhhccCCCceeeecC
Q 047556 604 RVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS--TCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITG 681 (1175)
Q Consensus 604 r~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 681 (1175)
++++++++.++.+| ..+.. +|++|+|++|.|..+|.. +.++++|++|+|++|......|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip-~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999999999 44443 999999999999999764 89999999999999954455588899999999999999
Q ss_pred ccccccCCccCCCCCCccccCceeeccCCC-ccCccccccccccc
Q 047556 682 AYLIKEMPFGMKELKNLQALSNFIVGTGTR-SSGLKDLKSLTFLS 725 (1175)
Q Consensus 682 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L~ 725 (1175)
|.+....|..+..+++|+.|++..+..... +..+..+++|+.|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 996665566699999999999888765543 33455555555443
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=1e-09 Score=110.06 Aligned_cols=108 Identities=28% Similarity=0.361 Sum_probs=89.3
Q ss_pred CCCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCch-hhhccCCCcee
Q 047556 600 CRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPS-KMRKLINLRHL 677 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L 677 (1175)
.++|+.|++++|.++.+++..|..+++|++|++++|.++.+|.. +.++++|++|+|++| .+..+|. .+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 36899999999999999877889999999999999999988765 689999999999999 5666655 46889999999
Q ss_pred eecCccccccCCcc-CCCCCCccccCceeeccC
Q 047556 678 DITGAYLIKEMPFG-MKELKNLQALSNFIVGTG 709 (1175)
Q Consensus 678 ~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~ 709 (1175)
++++|. +..+|.. +..+++|+.|++..+...
T Consensus 106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 999998 4566655 578889998887766433
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=9.9e-10 Score=131.00 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=88.1
Q ss_pred hhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccC--chhhhccCCC
Q 047556 597 LSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKL--PSKMRKLINL 674 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L 674 (1175)
|..+++|+.|+|++|.++.+| ..|+++++|++|+|++|.|+.+| .+++|++|++|+|++| .+..+ |..++.+++|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTC
T ss_pred ccccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCC
Confidence 788999999999999999998 69999999999999999999999 8999999999999999 66666 8999999999
Q ss_pred ceeeecCccccccCCccCCC----CCCcccc
Q 047556 675 RHLDITGAYLIKEMPFGMKE----LKNLQAL 701 (1175)
Q Consensus 675 ~~L~l~~~~~~~~~p~~~~~----L~~L~~L 701 (1175)
+.|++++|. +..+|..+.. +++|+.|
T Consensus 536 ~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 536 VLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred CEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 999999999 4555544432 5555554
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=1.4e-09 Score=108.20 Aligned_cols=99 Identities=24% Similarity=0.377 Sum_probs=49.3
Q ss_pred cEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchh-hhccCCCceeeecC
Q 047556 604 RVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLDITG 681 (1175)
Q Consensus 604 r~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 681 (1175)
+.++++++.++.+|. .+. .+|++|+|++|.|..+ |..|.++++|++|+|++| .+..+|.. +.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 445555555555552 222 4555555555555544 334555555555555555 44444433 34555555555555
Q ss_pred ccccccCCcc-CCCCCCccccCceeec
Q 047556 682 AYLIKEMPFG-MKELKNLQALSNFIVG 707 (1175)
Q Consensus 682 ~~~~~~~p~~-~~~L~~L~~L~~~~~~ 707 (1175)
|. +..+|.. +..+++|+.|++..+.
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCC
Confidence 55 3333333 5555555555544443
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=1.4e-09 Score=108.11 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=79.8
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCchh-hhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 678 (1175)
++|++|+|++|.++.+++..|.++++|++|+|++|.|+.+|.. |.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 7899999999999999888999999999999999999999876 589999999999999 67777765 89999999999
Q ss_pred ecCccccccCCccC
Q 047556 679 ITGAYLIKEMPFGM 692 (1175)
Q Consensus 679 l~~~~~~~~~p~~~ 692 (1175)
+++|. +...+..+
T Consensus 112 L~~N~-~~c~~~~~ 124 (174)
T 2r9u_A 112 LYNNP-WDCECRDI 124 (174)
T ss_dssp CCSSC-BCTTBGGG
T ss_pred eCCCC-cccccccH
Confidence 99998 44444433
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=1.4e-10 Score=118.73 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=102.9
Q ss_pred HhhhcccceeeecccccCCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecc
Q 047556 555 EVMHEVQHLRTFLPVSISSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSH 634 (1175)
Q Consensus 555 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~ 634 (1175)
..+..+++|+.|.+.++... . ++ .+..+++|++|+|++|.++.+| ..+..+++|++|+|++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~---------------~--l~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIE---------------K--IS-SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISY 102 (198)
T ss_dssp HHHHHTTTCSEEECSEEEES---------------C--CC-CHHHHTTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEE
T ss_pred HHHhcCCCCCEEECCCCCCc---------------c--cc-ccccCCCCCEEECCCCCccccc-chhhcCCcCCEEECcC
Confidence 36678889999887665310 1 22 5788999999999999999998 6788889999999999
Q ss_pred cccccccccccCcccccEEeccCccccccCch--hhhccCCCceeeecCccccccCCcc----------CCCCCCccccC
Q 047556 635 TWIRNLPKSTCSLINLQILLLRGCYYLLKLPS--KMRKLINLRHLDITGAYLIKEMPFG----------MKELKNLQALS 702 (1175)
Q Consensus 635 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----------~~~L~~L~~L~ 702 (1175)
|.+..+| .+.++++|++|+|++| .+..+|. .+..+++|++|++++|.+....|.. +..+++|+.|+
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999988 6999999999999999 6777664 6899999999999999865555532 55666666664
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=3.2e-09 Score=105.15 Aligned_cols=101 Identities=23% Similarity=0.234 Sum_probs=67.4
Q ss_pred ccEEEecccccccCCCCccCCcccccEEEecccccccc-cccccCcccccEEeccCccccccCchh-hhccCCCceeeec
Q 047556 603 LRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNL-PKSTCSLINLQILLLRGCYYLLKLPSK-MRKLINLRHLDIT 680 (1175)
Q Consensus 603 Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 680 (1175)
.+.|++++|.++.+| ..+ ..+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. +.++++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 456777777777777 333 26777777777777766 455777777777777777 45555543 5677777777777
Q ss_pred CccccccCCc-cCCCCCCccccCceeecc
Q 047556 681 GAYLIKEMPF-GMKELKNLQALSNFIVGT 708 (1175)
Q Consensus 681 ~~~~~~~~p~-~~~~L~~L~~L~~~~~~~ 708 (1175)
+|. +..+|. .+..+++|+.|++..+..
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 777 344444 367777777776666543
No 151
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.86 E-value=5.7e-09 Score=116.22 Aligned_cols=267 Identities=15% Similarity=0.104 Sum_probs=141.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|++..++++...+......+ .....+.|+|++|+|||++|+++++.... ..++++.+.......+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~------~~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGV------NLRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTC------CEEEECTTTCCSHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCC------CEEEEeccccCChHHHH---
Confidence 469999999998888775311000 12356889999999999999999874321 12344443322221111
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCC------------------CCCcEEE
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGA------------------APNSKIV 323 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~ii 323 (1175)
..+...+ .++.+|++|++..-.....+.+...+... ..+..+|
T Consensus 82 ------------------~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 82 ------------------AILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ------------------HHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ------------------HHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1111111 35668999999654433344443322211 0235666
Q ss_pred EecCChh-hhhhc-C-CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHHhcCC-
Q 047556 324 VTTRHSH-VASTM-E-PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGLLRSK- 399 (1175)
Q Consensus 324 vTtr~~~-v~~~~-~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~- 399 (1175)
.||.... +...+ . ....+.+.+++.+|..+++...+...... . ..+....+++.++|.|-.+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~---~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-I---TEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-C---CHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-C---CHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6665432 21111 1 12578999999999999988776432221 1 12446779999999998877665544211
Q ss_pred --------CHHHHHHHHhhcccCCCCCCCchHHHHHhhhcCChhhhhhhhhhc-cCCCC----------cccChhHHH--
Q 047556 400 --------RHDAWDEILNSKILDLPQRNGILPALSLSYHYLPSHLKRCFSYCA-IFPKD----------YDFEEKELV-- 458 (1175)
Q Consensus 400 --------~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a-~fp~~----------~~i~~~~li-- 458 (1175)
+.+....+..... ..+..++...+..+..+. .|..+ ..+++..+.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~--------------~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALG--------------LDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHT--------------CCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhc--------------ccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 3344444433211 112233433333333222 12111 112222222
Q ss_pred --HHHHHccCccccccCCCCHHHHHHHHHH-HHHhCCCccc
Q 047556 459 --FLWMAEGIIQESRNNKKQPEVLGREYFH-DLLSRSILQP 496 (1175)
Q Consensus 459 --~~w~a~g~i~~~~~~~~~~~~~~~~~~~-~L~~~sll~~ 496 (1175)
.+-+..|++.....+ ....+.|..|+. ++.+|+|||+
T Consensus 285 l~~~~i~~~li~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRG-RVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTE-EEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCcc-ceecHHHHHHHhcCCCCCCCCCC
Confidence 234567777654433 566677888887 8888888874
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.5e-08 Score=112.92 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=115.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|++..++.+.+++.... .+.+.++|++|+|||++|+.+++...... .....++++.+...... .++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChH-HHHHH
Confidence 468999999999999987632 23389999999999999999988632211 11123444433322221 12222
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHh-cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhh-hhh-cCCC
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAV-DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHV-AST-MEPI 338 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~-~~~~ 338 (1175)
+..+.... ..+ .+++.++|+||++.-....++.+...+.....++.+|+||+...- ... ....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22211000 011 356899999999765545555565555544567788888866432 111 1223
Q ss_pred CeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHHH
Q 047556 339 QQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKALG 393 (1175)
Q Consensus 339 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 393 (1175)
..+.+.+++.++..+++...+...+... ..+....|++.|+|.|. |+..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5899999999999999987664322111 12345779999999995 444443
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.82 E-value=4.6e-09 Score=105.15 Aligned_cols=92 Identities=25% Similarity=0.318 Sum_probs=81.6
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCchh-hhcc
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPSK-MRKL 671 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L 671 (1175)
+..|..+++|++|+|++|.++.+++..|..+++|++|+|++|.++.+|.. +.++++|++|+|++| .+..+|.. +..+
T Consensus 45 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l 123 (177)
T 2o6r_A 45 HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRL 123 (177)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCC
Confidence 44578899999999999999999987889999999999999999998775 689999999999999 66777765 5889
Q ss_pred CCCceeeecCccccc
Q 047556 672 INLRHLDITGAYLIK 686 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~ 686 (1175)
++|++|++++|.+..
T Consensus 124 ~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 124 TSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred cccCEEEecCCCeec
Confidence 999999999998543
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=3.4e-08 Score=110.06 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=61.9
Q ss_pred CCCccEEEecccccc--cCCCCccCCcccccEEEecccccccccc-cccC--------cccccEEeccCccccccCch-h
Q 047556 600 CRKLRVLSLSRSYIT--ELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCS--------LINLQILLLRGCYYLLKLPS-K 667 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~--~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~--------L~~L~~L~L~~~~~l~~lp~-~ 667 (1175)
+++|++|||++|.+. ..... .++.++++.+..+. +|. .|.+ +.+|+.|+|.+ .+..+++ .
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhcccccccccccCCCcEEECCc--cccchhHHH
Confidence 889999999999988 33322 23335666666663 333 4566 88888888887 4555654 4
Q ss_pred hhccCCCceeeecCccccccCCccCCCCCCccccC
Q 047556 668 MRKLINLRHLDITGAYLIKEMPFGMKELKNLQALS 702 (1175)
Q Consensus 668 i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 702 (1175)
|..+++|+.|++++|.+....+..|..+.++..+.
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 78888888888888874333334466655555543
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=8.9e-09 Score=101.95 Aligned_cols=83 Identities=25% Similarity=0.298 Sum_probs=76.0
Q ss_pred CCccEEEecccccccCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCccccccCch-hhhccCCCceee
Q 047556 601 RKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCYYLLKLPS-KMRKLINLRHLD 678 (1175)
Q Consensus 601 ~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 678 (1175)
++|++|+|++|.++.+++..|.++++|++|+|++|.|+.+|.. |.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 7899999999999999888999999999999999999999775 689999999999999 6777765 589999999999
Q ss_pred ecCccc
Q 047556 679 ITGAYL 684 (1175)
Q Consensus 679 l~~~~~ 684 (1175)
+++|.+
T Consensus 109 L~~N~~ 114 (170)
T 3g39_A 109 LLNNPW 114 (170)
T ss_dssp CCSSCB
T ss_pred eCCCCC
Confidence 999984
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.3e-07 Score=105.44 Aligned_cols=188 Identities=14% Similarity=0.080 Sum_probs=114.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|++..++.+..++... ..+.+.++|++|+||||+|+.+++...... .-...+.+..+...... .++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGIN-VIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHHH-TTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCchH-HHHHH
Confidence 35899999999999998764 223489999999999999999998532211 11122333333211110 11111
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhh-hhhc-CCCC
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHV-ASTM-EPIQ 339 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~-~~~~ 339 (1175)
+..+... .....+++.++|+||++.-....++.+...+.....++++|+||....- ...+ ....
T Consensus 97 ~~~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 1110000 0011267889999999766556666776666555567888888876432 1111 1124
Q ss_pred eeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHHHH
Q 047556 340 QYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALGGL 395 (1175)
Q Consensus 340 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 395 (1175)
.+.+.+++.++..+++...+...+. . ...+....|++.++|.|-.+..+...
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGL-E---LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC-E---ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 7899999999999998877643221 1 12334577889999999866544433
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=1.1e-07 Score=105.88 Aligned_cols=89 Identities=11% Similarity=0.171 Sum_probs=46.9
Q ss_pred CCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhhhhccCCCccc-ceeecCCcCCcccCcCCC
Q 047556 1020 PNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLC-FLNIIGFRNLKKLSSKGF 1098 (1175)
Q Consensus 1020 ~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~-~L~l~~c~~l~~l~~~~l 1098 (1175)
+++|+.|++.+|.+..+. +..|.++++|+.|++.++ +..++...| ...++|+ .+++.+ +++.++...|
T Consensus 225 ~~~L~~l~L~~n~i~~I~---~~aF~~~~~L~~l~l~~n----i~~I~~~aF--~~~~~L~~~l~l~~--~l~~I~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIP---DFTFAQKKYLLKIKLPHN----LKTIGQRVF--SNCGRLAGTLELPA--SVTAIEFGAF 293 (329)
T ss_dssp CTTCCEEECTTBCCCEEC---TTTTTTCTTCCEEECCTT----CCEECTTTT--TTCTTCCEEEEECT--TCCEECTTTT
T ss_pred cCCCeEEECCCCCcceec---HhhhhCCCCCCEEECCcc----cceehHHHh--hCChhccEEEEEcc--cceEEchhhh
Confidence 345555555544444333 234555666666666552 444555443 3344555 555554 5555555556
Q ss_pred CCCCCCCceeccCCCCCCcCCC
Q 047556 1099 QSLTSLEFLWIDDCPNLKSFPE 1120 (1175)
Q Consensus 1099 ~~l~~L~~L~l~~c~~l~~lp~ 1120 (1175)
.++++|+.|++.+ +.++.++.
T Consensus 294 ~~c~~L~~l~l~~-n~i~~I~~ 314 (329)
T 3sb4_A 294 MGCDNLRYVLATG-DKITTLGD 314 (329)
T ss_dssp TTCTTEEEEEECS-SCCCEECT
T ss_pred hCCccCCEEEeCC-CccCccch
Confidence 6666666666554 44555554
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=4.6e-07 Score=97.51 Aligned_cols=173 Identities=10% Similarity=0.032 Sum_probs=105.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccccc--cc--ceEEEEEeCCCCCHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETF--KF--DIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~f--~~~~wv~~s~~~~~~~~~ 258 (1175)
.+.||+++++++...|...-.. ...+.+.|+|++|+|||++|++|+++...... .. -..+.|++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~--~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS--SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 4889999999999877653211 34578899999999999999999987532110 11 135677777778889999
Q ss_pred HHHHHHhcCCCCC-ccchHHHHHHHHHH--hcCccEEEEEecCccCCcccHHHHhcccC--CC-CCCcEEEEecCChhhh
Q 047556 259 RAILESITYSSCD-LKALNEVQVQLKKA--VDGKKIFLVLDDVWNEDYGLWEDLKAPLM--GA-APNSKIVVTTRHSHVA 332 (1175)
Q Consensus 259 ~~il~~l~~~~~~-~~~~~~~~~~l~~~--l~~~r~LlVlDdv~~~~~~~~~~l~~~l~--~~-~~gs~iivTtr~~~v~ 332 (1175)
..|++++...... ....+.+...+... -.++++++|||+++.-. .-+.+...+. .. .....||.++...+..
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999654321 12222333333321 24678999999995432 2233332221 11 1122333344332211
Q ss_pred ---------hhcCCCCeeeCCCCChhhhHHHHHhhhc
Q 047556 333 ---------STMEPIQQYNLRCLSDEDCWSLFMMHAF 360 (1175)
Q Consensus 333 ---------~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 360 (1175)
..++ ...+.+.+++.+|-.+++.+++.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1221 24689999999999999887763
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.54 E-value=5.1e-06 Score=94.32 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=72.5
Q ss_pred hhccCCCCCCCeeEeccCCCccccccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCC
Q 047556 1041 QWGLHRLTSLRRLWIEGCDDDEAECFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPE 1120 (1175)
Q Consensus 1041 ~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~ 1120 (1175)
+..|.++++|+.+++.+ . +..++...| ...++|+.+.|.. +++.++...|.++ +|+.|.+.+ +.+..++.
T Consensus 293 ~~aF~~c~~L~~l~l~~-~---i~~I~~~aF--~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~ 362 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPE-S---IRILGQGLL--GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFE 362 (401)
T ss_dssp TTTTTTCTTCCEECCCT-T---CCEECTTTT--TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCC
T ss_pred HHHhhCCccCCeEEeCC-c---eEEEhhhhh--cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCccccc
Confidence 34688889999999885 2 667777665 4567899999955 5888888899999 999999998 45666665
Q ss_pred C---CCCCCcceeeeccCchhHHhhccCCCCCCccccC
Q 047556 1121 V---GLPSSILWLNIWSCPMLEKEYKRDTGKEWSKIAT 1155 (1175)
Q Consensus 1121 ~---~~~~sL~~L~i~~cp~L~~~~~~~~g~~~~~i~~ 1155 (1175)
. +++.+++.|.+-... ...|+. ...|.....
T Consensus 363 ~~F~~~~~~l~~l~vp~~~--~~~y~~--a~~W~~f~~ 396 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAES--VEKYKN--ANGWRDFTN 396 (401)
T ss_dssp SSCCCSCTTCCEEEECGGG--HHHHHH--STTGGGGGG
T ss_pred ccccCCCCCccEEEeCHHH--HHHhhh--ccchhhhhh
Confidence 2 345678888876643 334443 246876654
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.53 E-value=7e-07 Score=101.54 Aligned_cols=195 Identities=16% Similarity=0.149 Sum_probs=113.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|++..++.+...+.... ....+.|+|++|+||||+|+.+++...... .+. ...+........+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~-------~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GIT-------ATPCGVCDNCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSC-------SSCCSSSHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCC-------CCCCcccHHHHHH
Confidence 358999999999999987642 235788999999999999999987543211 110 0000000001111
Q ss_pred HHHh-------cCCC-CCccchHHHHHHHHHH-hcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-h
Q 047556 262 LESI-------TYSS-CDLKALNEVQVQLKKA-VDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH-V 331 (1175)
Q Consensus 262 l~~l-------~~~~-~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 331 (1175)
.... .... ........+...+... ..+++.++|+||++.-+...++.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 1100 0000 0011122222111111 135678999999976555566677666655555677777776443 2
Q ss_pred hhh-cCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHHH
Q 047556 332 AST-MEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKALG 393 (1175)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1175)
... ......+.+.+++.++..+++...+...+.. . ..+....|++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-H---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-B---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 1233678999999999999998765322211 1 12345679999999998776554
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=1e-07 Score=107.13 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=39.3
Q ss_pred hhcCCCccEEEecc-cccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCchhhhccCCC
Q 047556 597 LSKCRKLRVLSLSR-SYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLPSKMRKLINL 674 (1175)
Q Consensus 597 ~~~~~~Lr~L~Ls~-~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 674 (1175)
+..+++|+.|+|++ |.++.+++..|.++.+|++|+|++|.|+.+|. .|.+|++|++|+|++| .+..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCc
Confidence 44444455555543 44554444444555555555555555544432 3444555555555554 333443332222224
Q ss_pred ceeeecCcc
Q 047556 675 RHLDITGAY 683 (1175)
Q Consensus 675 ~~L~l~~~~ 683 (1175)
+.|+|.+|.
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 555544444
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.48 E-value=9.3e-07 Score=98.03 Aligned_cols=182 Identities=12% Similarity=0.054 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++...... .-...+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccC--------
Confidence 46899999999998887653 223389999999999999999987532111 111223334332111
Q ss_pred HHHhcCCCCCccchHHHHHHHHHH--h-cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-hhhh-cC
Q 047556 262 LESITYSSCDLKALNEVQVQLKKA--V-DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH-VAST-ME 336 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~--l-~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~ 336 (1175)
.............. + .+++.++|+|+++.-.....+.+...+.....+.++|+||.... +... ..
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 01111111111111 1 25688999999976554555666666665556778888776543 2111 12
Q ss_pred CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 337 PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 337 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
....+.+.+++.++..+++...+...+... ..+....+++.++|.+-.+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCB----CHHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 235899999999999999887764322211 1234567889999999765443
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.47 E-value=6.4e-06 Score=94.09 Aligned_cols=64 Identities=8% Similarity=0.206 Sum_probs=34.8
Q ss_pred cccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCc-hhhhccCCCceeee
Q 047556 613 ITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHLDI 679 (1175)
Q Consensus 613 i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 679 (1175)
++.+...+|.++.+|+.+.|.. .++.++. +|.++.+|+.++|..+ +..++ ..|..+.+|+.+.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcc
Confidence 5555556666666666666653 3555533 4666666666666543 33332 22455555555443
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.46 E-value=2e-07 Score=104.88 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=81.8
Q ss_pred EEEeccc-ccccCCCCccCCcccccEEEecc-ccccccc-ccccCcccccEEeccCccccccCchhhhccCCCceeeecC
Q 047556 605 VLSLSRS-YITELPKGSMSGWKHLRYLNLSH-TWIRNLP-KSTCSLINLQILLLRGCYYLLKLPSKMRKLINLRHLDITG 681 (1175)
Q Consensus 605 ~L~Ls~~-~i~~l~~~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 681 (1175)
.++++++ .++.+| . |..+.+|++|+|++ |.|..+| ..|.+|.+|++|+|++|......|..|.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 899999 4 99999999999996 9999997 5799999999999999954444456789999999999999
Q ss_pred ccccccCCccCCCCCCccccCceeecc
Q 047556 682 AYLIKEMPFGMKELKNLQALSNFIVGT 708 (1175)
Q Consensus 682 ~~~~~~~p~~~~~L~~L~~L~~~~~~~ 708 (1175)
|. +..+|..+.....|+.|++..+..
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred Cc-cceeCHHHcccCCceEEEeeCCCc
Confidence 99 556776543333388887766543
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=1.4e-06 Score=99.02 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=38.6
Q ss_pred CccEEEecccccccCCCCccCCcccccEEEecccccccccccccCcccccEEeccCccccccCc-hhhhccCCCceeeec
Q 047556 602 KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPKSTCSLINLQILLLRGCYYLLKLP-SKMRKLINLRHLDIT 680 (1175)
Q Consensus 602 ~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 680 (1175)
+|+.+.+.. .++.+...+|.++.+|+.++|++|.++.+|.......+|+.+.|..+ +..++ ..|.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence 355555543 44455545555555555555555555555544333455555555532 33332 234555555555554
Q ss_pred C
Q 047556 681 G 681 (1175)
Q Consensus 681 ~ 681 (1175)
.
T Consensus 235 ~ 235 (401)
T 4fdw_A 235 E 235 (401)
T ss_dssp T
T ss_pred C
Confidence 4
No 166
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.34 E-value=8e-06 Score=91.09 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=104.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHH
Q 047556 181 ERTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 181 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (1175)
-..++|++..++++..++......+ .....|.|+|++|+|||++|+++++.... . .+.++.+.....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~ia~~~~~---~---~~~~~~~~~~~~------ 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRN-ECLDHILFSGPAGLGKTTLANIISYEMSA---N---IKTTAAPMIEKS------ 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTT-SCCCCEEEECSTTSSHHHHHHHHHHHTTC---C---EEEEEGGGCCSH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC---C---eEEecchhccch------
Confidence 3569999999999998886531111 23356899999999999999999875321 2 223333221111
Q ss_pred HHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCC------------------CCcEE
Q 047556 261 ILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAA------------------PNSKI 322 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i 322 (1175)
......+.. ..+..+|++|++..-.......+...+.... ++..+
T Consensus 95 ---------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 95 ---------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ---------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ---------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111111 2456789999997654444444443332211 12456
Q ss_pred EEecCChhh-hhhc--CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 323 VVTTRHSHV-ASTM--EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 323 ivTtr~~~v-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
|.||..... ...+ .....+.+.+++.++..+++...+..... ....+....|++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 666654321 1111 12357999999999999998877643221 112334567888999999655443
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.27 E-value=1.1e-06 Score=93.05 Aligned_cols=172 Identities=11% Similarity=0.044 Sum_probs=98.3
Q ss_pred ccccc---hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 183 TVFGR---HQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 183 ~~vgr---~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.|+|+ +..++.+..+.... ..+.+.|+|++|+||||+|+.+++..... ...++|++++.....
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS-----
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH-----
Confidence 46663 34555565555432 23678999999999999999998854332 234566665432110
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCccc--HHHHhcccCCC-CCC-cEEEEecCChh-----
Q 047556 260 AILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGL--WEDLKAPLMGA-APN-SKIVVTTRHSH----- 330 (1175)
Q Consensus 260 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~~----- 330 (1175)
+ .. .+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~----------~~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----S----------TA---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----C----------GG---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----H----------HH---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 00 00 011 346789999996543322 23333322111 112 24777776322
Q ss_pred ----hhhhcCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 331 ----VASTMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 331 ----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
+...+.....+.+.+++.++..+++...+..... .. ..+....+++.++|.+-.+..+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QL---PEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CC---CHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHccCCHHHHHHH
Confidence 1112222367999999999999999887642221 11 2334567889999988766544
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=4.6e-05 Score=86.92 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=62.9
Q ss_pred HHhhhcCCCccEEEecccccccCCCCccCCcccccEEEecccccccccc-cccCcccccEEeccCccccccCc-hhhhcc
Q 047556 594 SNLLSKCRKLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTWIRNLPK-STCSLINLQILLLRGCYYLLKLP-SKMRKL 671 (1175)
Q Consensus 594 ~~~~~~~~~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L 671 (1175)
..+|.+|.+|+.+.|.. .++.+...+|.++.+|+.++|..+ ++.++. .|.++.+|+.+.+..+ +..++ ..|..+
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~ 139 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecc
Confidence 34678888899888864 477887788888899999988754 666644 5777888888777654 33332 234444
Q ss_pred CCCceeeecCccccccCCccCCCCCCccccC
Q 047556 672 INLRHLDITGAYLIKEMPFGMKELKNLQALS 702 (1175)
Q Consensus 672 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 702 (1175)
..+.......... .-...|..+++|+.+.
T Consensus 140 ~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~ 168 (394)
T 4fs7_A 140 DFKEITIPEGVTV--IGDEAFATCESLEYVS 168 (394)
T ss_dssp CCSEEECCTTCCE--ECTTTTTTCTTCCEEE
T ss_pred cccccccCccccc--cchhhhcccCCCcEEe
Confidence 4333332222221 1122355556665553
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.24 E-value=1.9e-06 Score=87.48 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++||+.+++++.+.+... ..+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999998763 23567899999999999999998753
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=8.9e-06 Score=95.82 Aligned_cols=198 Identities=15% Similarity=0.121 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhcCC-----------CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC
Q 047556 182 RTVFGRHQDKAKILEMVSANS-----------PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE 250 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~-----------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 250 (1175)
..++|++..++++.+++.... ..+.+..+.+.|+|++|+||||+|+.+++... + .++.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----C-CEEEEeCCC
Confidence 569999999999999986510 00002346899999999999999999998531 1 234445544
Q ss_pred CCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCc---ccHHHHhcccCCCCCCcEEEEecC
Q 047556 251 DFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDY---GLWEDLKAPLMGAAPNSKIVVTTR 327 (1175)
Q Consensus 251 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTtr 327 (1175)
..... .....+........-..-...... .....+++.+||+|+++.-.. ..+..+...+... +..||+++.
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICN 187 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEES
T ss_pred cchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 43332 222222221111000000000000 001236789999999965322 2234444333322 334555544
Q ss_pred Chh---hhhhcCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC-chHHHHHHHH
Q 047556 328 HSH---VASTMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG-LPLAAKALGG 394 (1175)
Q Consensus 328 ~~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 394 (1175)
+.. +.........+.+.+++.++..+.+...+...+....+. ....|++.++| ++-++..+..
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~----~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN----VIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT----HHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHcCCcHHHHHHHHHH
Confidence 322 222112335789999999999998877664332212222 35678899999 5555665543
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=9e-06 Score=91.45 Aligned_cols=194 Identities=8% Similarity=0.066 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccc-eEEEEEeCCCCCHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFD-IKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 260 (1175)
..++|++..++.+..++.... .+.+.++|++|+||||+|+.+++...... .+. .++.+..+....... +++
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~ 108 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPD-LMKSRILELNASDERGISI-VRE 108 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHH-HHTTSEEEECSSSCCCHHH-HTT
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCc-ccccceEEEccccccchHH-HHH
Confidence 468999999999999986532 22389999999999999999987532110 111 223333333222222 222
Q ss_pred HHHHhcCCC-CCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-hhhhc-CC
Q 047556 261 ILESITYSS-CDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH-VASTM-EP 337 (1175)
Q Consensus 261 il~~l~~~~-~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~ 337 (1175)
.+..+.... ...... .....-.+++-+|++|++..-.......+...+.......++|++|.... +...+ ..
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 222221110 000000 00111124567999999966554455556655544445667777765432 21111 12
Q ss_pred CCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 338 IQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 338 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
...+.+.+++.++..+.+...+...+.. . ..+..+.|++.++|.|-.+..+
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVK-C---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC-C---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCC-C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2478899999999999888765432211 1 1335678999999998765443
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.16 E-value=1.5e-05 Score=90.14 Aligned_cols=194 Identities=16% Similarity=0.122 Sum_probs=104.8
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEe----CCCCCH
Q 047556 182 RTVFGRHQDKAK---ILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCV----SEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~---l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----s~~~~~ 254 (1175)
+.++|++..++. +...+.... ...+.+.|+|++|+|||++|+.+++...... .| +.+.. +.....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~~~-~~---~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDT-PF---TAIAGSEIFSLEMSK 115 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSC-CE---EEEEGGGGSCSSSCH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcccC-Cc---ccccchhhhhcccch
Confidence 469999988766 455555432 2236899999999999999999998643211 11 22221 222333
Q ss_pred HHHHHHHHHHhcC-C-----------------------------CCCccchHHHHHHHHHHh-----cCc----cEEEEE
Q 047556 255 LSISRAILESITY-S-----------------------------SCDLKALNEVQVQLKKAV-----DGK----KIFLVL 295 (1175)
Q Consensus 255 ~~~~~~il~~l~~-~-----------------------------~~~~~~~~~~~~~l~~~l-----~~~----r~LlVl 295 (1175)
...+.+....... . .............+.+.. .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3344333332110 0 000000112222221111 233 359999
Q ss_pred ecCccCCcccHHHHhcccCCCCCCcEEEEecCC-----------------hhhhhhcCCCCeeeCCCCChhhhHHHHHhh
Q 047556 296 DDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH-----------------SHVASTMEPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 296 Ddv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
|++..-.......+...+...... .++++|.. +.+... ...+.+.+++.++..+++...
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHH
Confidence 999765555556666555444333 34444431 122222 245789999999999999877
Q ss_pred hccCCCCCcchhHHHHHHHHHHhcC-CchHHHHH
Q 047556 359 AFVSRDLTAQQISDLFRDKVVGKCR-GLPLAAKA 391 (1175)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~-glPlai~~ 391 (1175)
+...... ...+....|++.+. |.|-.+..
T Consensus 272 ~~~~~~~----~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 272 CEEEDVE----MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHTTCC----BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHcCCC----CCHHHHHHHHHHhcCCCHHHHHH
Confidence 6432221 12334567888887 77755443
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.15 E-value=1.1e-05 Score=92.56 Aligned_cols=163 Identities=15% Similarity=0.071 Sum_probs=95.0
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
...+.|+|++|+||||||+.+++...... .-..+++++.. .+..++...+.... . ..+.+.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSE------KFLNDLVDSMKEGK-----L----NEFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHH------HHHHHHHHHHHTTC-----H----HHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHH------HHHHHHHHHHHccc-----H----HHHHHHhcC
Confidence 46789999999999999999998542210 01123455433 23444444443211 1 123333443
Q ss_pred ccEEEEEecCccCCc--ccHHHHhcccCC-CCCCcEEEEecCChh---------hhhhcCCCCeeeCCCCChhhhHHHHH
Q 047556 289 KKIFLVLDDVWNEDY--GLWEDLKAPLMG-AAPNSKIVVTTRHSH---------VASTMEPIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~ 356 (1175)
++-+|++||++.-.. ...+.+...+.. ...|..||+||.... +...+.....+.+.+++.++-.+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 677999999965322 222333333321 234678888887632 22233334678999999999999998
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 357 MHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
..+.......++ ++...|++.++|.+-.+.-
T Consensus 274 ~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 274 KMLEIEHGELPE----EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHTCCCCT----THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHcCCCCCH----HHHHHHHHhcCCCHHHHHH
Confidence 776422211111 2356788889998865443
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.09 E-value=4.8e-05 Score=86.99 Aligned_cols=177 Identities=17% Similarity=0.171 Sum_probs=99.1
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHH
Q 047556 182 RTVFGRHQDK---AKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSI 257 (1175)
Q Consensus 182 ~~~vgr~~~~---~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~ 257 (1175)
..++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++.... .| +.++.. .....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~~~---~f-----~~l~a~~~~~~~- 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYANA---DV-----ERISAVTSGVKE- 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHTTC---EE-----EEEETTTCCHHH-
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHhCC---Ce-----EEEEeccCCHHH-
Confidence 4688988877 6777777653 3467999999999999999999985321 22 222211 11111
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE-EecCChhh--h-h
Q 047556 258 SRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV-VTTRHSHV--A-S 333 (1175)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v--~-~ 333 (1175)
++.++.. .......+++.+|++|+++.-.....+.+...+..+ ...+| .||.+... . .
T Consensus 91 ir~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHH
Confidence 1111111 001112467899999999654433344444444331 23344 35555431 1 1
Q ss_pred hcCCCCeeeCCCCChhhhHHHHHhhhccCCCC---CcchhHHHHHHHHHHhcCCchHHHHH
Q 047556 334 TMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDL---TAQQISDLFRDKVVGKCRGLPLAAKA 391 (1175)
Q Consensus 334 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1175)
......++.+.+++.++..+++.+........ .......+..+.|++.++|.+-.+..
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 11233578899999999999988765431110 11122334567788889998765443
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.09 E-value=3.9e-05 Score=83.07 Aligned_cols=184 Identities=17% Similarity=0.114 Sum_probs=99.6
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS-------GHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
..++|.+..++++.+.+...... +....+.+.|+|++|+|||++|+++++.... . .+.+..+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~---~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA---T---FIRVVGSELV-- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC---E---EEEEEGGGGC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---C---EEEEehHHHH--
Confidence 46899999999998877431000 0022356899999999999999999875322 1 2223322110
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC-----------Ccc---cHHHHhcccC--CCCC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE-----------DYG---LWEDLKAPLM--GAAP 318 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~~~ 318 (1175)
.. ............+.......+.+|++|+++.- +.. ....+...+. ....
T Consensus 89 ------------~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 89 ------------KK-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CC-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------Hh-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 00 00111111222223333456789999999531 111 1112222221 1234
Q ss_pred CcEEEEecCChhhhh-----hcCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC-chHHHHH
Q 047556 319 NSKIVVTTRHSHVAS-----TMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG-LPLAAKA 391 (1175)
Q Consensus 319 gs~iivTtr~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~ 391 (1175)
+..||.||....... ...-...+.+...+.++..+++...+..... ..... ...+++.+.| .|-.|..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 567788887553322 1012246889999999999999877643221 11111 2457777776 4534443
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.08 E-value=4.3e-05 Score=82.03 Aligned_cols=195 Identities=14% Similarity=0.185 Sum_probs=100.0
Q ss_pred ccccchhhHHHHHH-------HHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 183 TVFGRHQDKAKILE-------MVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~-------~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.++|....++++.. .+..... ...+.+.|+|++|+|||++|+++++... .. .+.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~---~~~~~vLl~G~~GtGKT~la~~ia~~~~-----~~-~~~i~~~~~~--- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDR---TPLVSVLLEGPPHSGKTALAAKIAEESN-----FP-FIKICSPDKM--- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSS---CSEEEEEEECSTTSSHHHHHHHHHHHHT-----CS-EEEEECGGGC---
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCC---CCCeEEEEECCCCCcHHHHHHHHHHHhC-----CC-EEEEeCHHHh---
Confidence 46777666665555 3322111 4557899999999999999999998521 11 1222222100
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC------C---ccc-HHHHhcccCC---CCCCcEE
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE------D---YGL-WEDLKAPLMG---AAPNSKI 322 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------~---~~~-~~~l~~~l~~---~~~gs~i 322 (1175)
++. ............+......++.+|++|+++.- . ... .+.+...+.. ......|
T Consensus 102 ---------~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 ---------IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 010 00011112222333333467899999998531 0 111 2223222221 2234456
Q ss_pred EEecCChhhhhhc---C-CCCeeeCCCCCh-hhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC------chHHHHH
Q 047556 323 VVTTRHSHVASTM---E-PIQQYNLRCLSD-EDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG------LPLAAKA 391 (1175)
Q Consensus 323 ivTtr~~~v~~~~---~-~~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPlai~~ 391 (1175)
|.||......... . -...+.+.++++ ++..+++.... . .. .+....|++.+.| ..-++..
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCCCccccHHHHHHH
Confidence 7778776543321 1 135688888888 56555555421 1 11 2234667888877 4555555
Q ss_pred HHHHhcCCCHHHHHHHHh
Q 047556 392 LGGLLRSKRHDAWDEILN 409 (1175)
Q Consensus 392 ~~~~l~~~~~~~w~~~~~ 409 (1175)
+-..........+..++.
T Consensus 242 l~~a~~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 242 IEMSLQMDPEYRVRKFLA 259 (272)
T ss_dssp HHHHTTSCGGGHHHHHHH
T ss_pred HHHHhhhchHHHHHHHHH
Confidence 444333334445555443
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.04 E-value=6.1e-05 Score=83.26 Aligned_cols=171 Identities=13% Similarity=0.073 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc-------------------cccceEEEEEe
Q 047556 188 HQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET-------------------FKFDIKAWVCV 248 (1175)
Q Consensus 188 ~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~ 248 (1175)
++..+.+...+..+ .-...+.++|+.|+|||++|+.+++...... .+++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 45566777777653 2235789999999999999999887532111 0111 122221
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh-----cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEE
Q 047556 249 SEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV-----DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV 323 (1175)
Q Consensus 249 s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1175)
.. .......++.. .+.+.+ .+++-++|+|+++.-.......+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 00111222222 222222 3567899999997655556667777776555667777
Q ss_pred EecCChh-hhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 324 VTTRHSH-VASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 324 vTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
++|.+.. +...+ .....+.+.++++++..+.+.... . .. .+.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7666543 22211 233579999999999999888765 1 11 223467889999999766443
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.03 E-value=6.2e-05 Score=80.35 Aligned_cols=187 Identities=15% Similarity=0.161 Sum_probs=97.9
Q ss_pred CccccchhhHHHHHHHHhc---CCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSA---NSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~---~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
..++|.+..++++.+.+.. ... .+....+.+.|+|++|+|||++|+++++.... . .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~---~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV---P---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---C---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C---EEEechHHHHh--
Confidence 4588998887777665432 110 00023356889999999999999999985321 1 23344432111
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC------------Cc---ccHHHHhcccCC--CCC
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE------------DY---GLWEDLKAPLMG--AAP 318 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------------~~---~~~~~l~~~l~~--~~~ 318 (1175)
.............+.......+.+|++|+++.- .. .....+...+.. ...
T Consensus 78 -------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 -------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000111112222233333456799999999642 00 111223222222 223
Q ss_pred CcEEEEecCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHH
Q 047556 319 NSKIVVTTRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKAL 392 (1175)
Q Consensus 319 gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 392 (1175)
+..||.||....... .. .-...+.+...+.++-.+++...+..... .... ......+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~--~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSS--TFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTH--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-Ccch--hhHHHHHHHHCCCCCHHHHHHH
Confidence 556777776544221 11 12256788999999999998876643222 1111 1223668888888654 44433
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=2.2e-05 Score=88.23 Aligned_cols=196 Identities=8% Similarity=0.041 Sum_probs=103.9
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccccc--c-cccce---------------
Q 047556 182 RTVFGRHQDKAKILEMV-SANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVE--T-FKFDI--------------- 242 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l-~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~--------------- 242 (1175)
..++|.+..++.+..++ ... .... +.|+|+.|+||||+|+.++...... + -.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899999888888877 332 1223 8999999999999999887732100 0 00110
Q ss_pred -----EEEEEeCCCC-CHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCC
Q 047556 243 -----KAWVCVSEDF-DVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGA 316 (1175)
Q Consensus 243 -----~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (1175)
.+.+..+... ......++++..+..... ..... .+. .+.+++-++|+|++..-+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0111111000 000012222222211100 00000 000 02346779999999765555556666655444
Q ss_pred CCCcEEEEecCChh-hhhhc-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 317 APNSKIVVTTRHSH-VASTM-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 317 ~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
..+..+|++|.+.. +...+ .....+.+.+++.++..+.+...+...+..... .+....|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 45677777776532 22111 223678999999999999988766432211110 224567889999988655443
No 180
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.02 E-value=3e-07 Score=103.35 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=39.0
Q ss_pred CCCccEEEecccccccCCCCccCC-----cccccEEEeccccccc--ccccccCcccccEEeccCccccccC-chhh---
Q 047556 600 CRKLRVLSLSRSYITELPKGSMSG-----WKHLRYLNLSHTWIRN--LPKSTCSLINLQILLLRGCYYLLKL-PSKM--- 668 (1175)
Q Consensus 600 ~~~Lr~L~Ls~~~i~~l~~~~~~~-----l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i--- 668 (1175)
+++|+.|+|++|.++......+.. ..+|++|+|++|.+.. +..-...+.+|+.|+|++| .++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 345666666666654432222221 2456666666665542 1111223455666666666 33211 1112
Q ss_pred --hccCCCceeeecCcc
Q 047556 669 --RKLINLRHLDITGAY 683 (1175)
Q Consensus 669 --~~L~~L~~L~l~~~~ 683 (1175)
...++|++|+|++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHSTTCCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCC
Confidence 123556666666665
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.99 E-value=3.6e-05 Score=84.52 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=89.0
Q ss_pred ccccchhhHHHHHHHHhcCC----------CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC
Q 047556 183 TVFGRHQDKAKILEMVSANS----------PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF 252 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~----------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 252 (1175)
.++|.+..++.+.+.+.... ... .....+.|+|++|+|||++|+.+++...... .....-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLG-YVRKGHLVSVTRD- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTT-SSSSCCEEEECGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CcCCCcEEEEcHH-
Confidence 47888888887776554210 001 3345789999999999999998887543222 1111123333311
Q ss_pred CHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC---------CcccHHHHhcccCCCCCCcEEE
Q 047556 253 DVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE---------DYGLWEDLKAPLMGAAPNSKIV 323 (1175)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ii 323 (1175)
.+.... ...........+... +.-+|++|+++.- .......+...+.....+..||
T Consensus 109 -----------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 109 -----------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp -----------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred -----------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 010000 011111122222222 3459999999632 3334455555555555677888
Q ss_pred EecCChhh----------hhhcCCCCeeeCCCCChhhhHHHHHhhhc
Q 047556 324 VTTRHSHV----------ASTMEPIQQYNLRCLSDEDCWSLFMMHAF 360 (1175)
Q Consensus 324 vTtr~~~v----------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 360 (1175)
.||..... ...+ ...+.+.+++.++-.+++...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 88865332 2221 26789999999999999877664
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.96 E-value=5.5e-05 Score=83.64 Aligned_cols=176 Identities=16% Similarity=0.112 Sum_probs=100.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++.+.+++... ....++.+.|++|+|||++|+.+++... ...+.++.+.. .. ..+++.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~~-~~i~~~ 92 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-KI-DFVRGP 92 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-CH-HHHHTH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-CH-HHHHHH
Confidence 46899999999999999854 2335788889999999999999987532 12344554332 21 222222
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC-cccHHHHhcccCCCCCCcEEEEecCChhh-hhhc-CCC
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED-YGLWEDLKAPLMGAAPNSKIVVTTRHSHV-ASTM-EPI 338 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~-~~~ 338 (1175)
+....... ...+++.++|+|+++.-. .+..+.+...+.....+.++|+||....- ...+ ...
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 22111000 012478899999996543 33445555444433346778888775431 1110 112
Q ss_pred CeeeCCCCChhhhHHHH-------HhhhccCCCCCcchhHHHHHHHHHHhcCCchHH
Q 047556 339 QQYNLRCLSDEDCWSLF-------MMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLA 388 (1175)
Q Consensus 339 ~~~~l~~L~~~e~~~lf-------~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1175)
..+.+.+++.++-.+++ ...+........+ .+....|++.++|.+-.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHH
Confidence 47899999988743332 2222111111111 13456788888886654
No 183
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.90 E-value=1.7e-06 Score=97.23 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=26.1
Q ss_pred ccccEEEeccccccc-----ccccccCcccccEEeccCccccc-----cCchhhhccCCCceeeecCcc
Q 047556 625 KHLRYLNLSHTWIRN-----LPKSTCSLINLQILLLRGCYYLL-----KLPSKMRKLINLRHLDITGAY 683 (1175)
Q Consensus 625 ~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 683 (1175)
.+|++|+|++|.|+. ++..+..+++|++|+|++|. ++ .++..+...++|++|+|++|.
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 445555555554432 33334444555555555552 21 123334444455555555554
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.87 E-value=0.00024 Score=78.10 Aligned_cols=185 Identities=14% Similarity=0.074 Sum_probs=101.7
Q ss_pred CccccchhhHHHHHHHHhc-------CCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSA-------NSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
..++|.+..++++.+.+.. -.... ...+-|.++|++|+|||+||+++++.... .| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~---~~---~~v~~~----- 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVATEANS---TF---FSVSSS----- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC-CCCCEEEEECSSSSCHHHHHHHHHHHHTC---EE---EEEEHH-----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHHCC---CE---EEEchH-----
Confidence 4689999999999887721 01111 23467899999999999999999985321 22 223221
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHH-HHHhcCccEEEEEecCccCCc-----------ccHHHHhcccC---CCCCC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQL-KKAVDGKKIFLVLDDVWNEDY-----------GLWEDLKAPLM---GAAPN 319 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~~r~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~g 319 (1175)
.+ .... ....+.....+ ...-..++.+|+||+++.-.. .....+...+. ....+
T Consensus 86 -~l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DL----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HH----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HH----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 1100 01112222222 222245678999999964211 01223333222 23345
Q ss_pred cEEEEecCChhhhh-hc--CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC-chHHHHHHH
Q 047556 320 SKIVVTTRHSHVAS-TM--EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG-LPLAAKALG 393 (1175)
Q Consensus 320 s~iivTtr~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 393 (1175)
..||.||....... .+ .-...+.+...+.++-.+++...+........+ .....|++.+.| .+-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 66666776543221 11 123567888889999999998876432221122 234568888887 454555443
No 185
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.86 E-value=1.1e-05 Score=77.11 Aligned_cols=114 Identities=14% Similarity=-0.049 Sum_probs=68.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAIL 262 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il 262 (1175)
.++|+...+.++.+.+...... ..-|.|+|.+|+|||++|+.+++.....+ . ..+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~----~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~-~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET----DIAVWLYGAPGTGRMTGARYLHQFGRNAQ--G-EFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC----CSCEEEESSTTSSHHHHHHHHHHSSTTTT--S-CCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCCHHHHHHHHHHhCCccC--C-CEE-EECCCCCcc--------
Confidence 5789999999999887543221 13478999999999999999998543222 1 123 555432221
Q ss_pred HHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCC
Q 047556 263 ESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRH 328 (1175)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 328 (1175)
.... ..+... ..-.|++|+++.-.......+...+.......+||.||..
T Consensus 66 ----------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0011 111111 2346899999766555555666655444455677777764
No 186
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.86 E-value=2e-05 Score=79.26 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999998753 22567899999999999999998753
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.83 E-value=0.00044 Score=75.71 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=99.9
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSAN----S--PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.+++|.+..++.+.+.+... . .......+-|.++|++|+|||+||+++++.... ...+.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-----CEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-----CcEEEEEhHHHHh--
Confidence 46889998888888766310 0 001123467899999999999999999985311 1122333332110
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHH-HHHhcCccEEEEEecCccCC-------cccH----HHHhcccCC---CCCCc
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQL-KKAVDGKKIFLVLDDVWNED-------YGLW----EDLKAPLMG---AAPNS 320 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~~r~LlVlDdv~~~~-------~~~~----~~l~~~l~~---~~~gs 320 (1175)
. ... ..+.....+ ...-..++.+|++|+++.-. .... ..+...+.. ...+.
T Consensus 85 ------------~-~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 ------------K-WLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp ------------S-SCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred ------------h-hhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 0 001 111222222 22224678899999995420 0111 122222221 23455
Q ss_pred EEEEecCChhhhh-hc--CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc-hHHHHHHHH
Q 047556 321 KIVVTTRHSHVAS-TM--EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL-PLAAKALGG 394 (1175)
Q Consensus 321 ~iivTtr~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~~ 394 (1175)
.||.||....... .+ .-...+.+...+.++-.+++............ ......|++.+.|. +-.|..+..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666665442211 11 23356788888888888888776532221111 22346788888886 444555443
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.83 E-value=6e-05 Score=83.27 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=85.0
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
...+.|+|++|+||||||+.+++.....+ ..++++++ ..+...+...+... ..+. +.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~---~~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~- 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMYK- 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHHH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHhc-
Confidence 35689999999999999999998542211 12345543 23333333333211 1111 122222
Q ss_pred ccEEEEEecCccCCc--ccHHHHhcccCC-CCCCcEEEEecCChh---------hhhhcCCCCeeeCCCCChhhhHHHHH
Q 047556 289 KKIFLVLDDVWNEDY--GLWEDLKAPLMG-AAPNSKIVVTTRHSH---------VASTMEPIQQYNLRCLSDEDCWSLFM 356 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~ 356 (1175)
+.-+|++||+..-.. ...+.+...+.. ...|..||+||.... +...+.....+.+.+ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 366999999965322 122333333221 124567888776432 222222335689999 9999999988
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHhcCCchH
Q 047556 357 MHAFVSRDLTAQQISDLFRDKVVGKCRGLPL 387 (1175)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1175)
..+......-. .+....|++.+ |..-
T Consensus 177 ~~~~~~~~~l~----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 177 EKLKEFNLELR----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTTCCCC----HHHHHHHHHHC-SSHH
T ss_pred HHHHhcCCCCC----HHHHHHHHHhC-CCHH
Confidence 87643222111 23456677777 6654
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=0.00018 Score=79.95 Aligned_cols=181 Identities=11% Similarity=0.146 Sum_probs=102.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccc-eEEEEEeCCCCCHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFD-IKAWVCVSEDFDVLSISRA 260 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 260 (1175)
..++|.+..++.+...+..+ +++.+.++|+.|+||||+|+.+++..... .+. .+.-++.+.......+ ++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~i-r~ 95 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYGK--NYSNMVLELNASDDRGIDVV-RN 95 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHTT--SHHHHEEEECTTSCCSHHHH-HT
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcCC--CccceEEEEcCcccccHHHH-HH
Confidence 45789888888888888753 22238999999999999999998753211 111 1122222221111111 11
Q ss_pred HHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh-hhhh-cCCC
Q 047556 261 ILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH-VAST-MEPI 338 (1175)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 338 (1175)
.+..+... ...+.+.+-++|+|+++.-.....+.+...+.......++|++|.... +... ....
T Consensus 96 ~i~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 96 QIKDFAST--------------RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHHB--------------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhh--------------cccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 11111000 000123478999999965544555556555544445667777765432 1111 1122
Q ss_pred CeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHH
Q 047556 339 QQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAA 389 (1175)
Q Consensus 339 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1175)
..+.+.+++.++..+.+...+....- ... .+..+.|++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 47889999999988888765532211 111 234567888888877643
No 190
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=2.2e-05 Score=82.40 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=58.1
Q ss_pred hhhcCCCccEEEecccccccCCC--CccCCcccccEEEecccccccccccccCcc--cccEEeccCccccccCc------
Q 047556 596 LLSKCRKLRVLSLSRSYITELPK--GSMSGWKHLRYLNLSHTWIRNLPKSTCSLI--NLQILLLRGCYYLLKLP------ 665 (1175)
Q Consensus 596 ~~~~~~~Lr~L~Ls~~~i~~l~~--~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp------ 665 (1175)
...++++|+.|+|++|.++.++. ..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|.....+|
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 34568888999999888877642 4556788888888888888876 3344444 78888888885544444
Q ss_pred -hhhhccCCCceee
Q 047556 666 -SKMRKLINLRHLD 678 (1175)
Q Consensus 666 -~~i~~L~~L~~L~ 678 (1175)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2356777777775
No 191
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=7.5e-06 Score=79.20 Aligned_cols=70 Identities=17% Similarity=0.338 Sum_probs=42.9
Q ss_pred ccCCCCCCCeeEeccCCCccccccchhhhh-ccC----CCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCc
Q 047556 1043 GLHRLTSLRRLWIEGCDDDEAECFPDEEMR-MML----PTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKS 1117 (1175)
Q Consensus 1043 ~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~-~~~----~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1117 (1175)
.+.++++|++|+|++|... .+.+.. +.. .++|++|+|++|.++++-....+.++++|+.|+|++|+.++.
T Consensus 80 ~L~~~~~L~~L~L~~C~~I-----tD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYI-----EDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGTTCSCCCEEEEESCTTC-----CHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCCEEEeCCCCcc-----CHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 3567888888888887533 333221 011 136777777777777764333445667777777777766654
No 192
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.75 E-value=0.0031 Score=71.64 Aligned_cols=84 Identities=8% Similarity=0.186 Sum_probs=55.4
Q ss_pred HhhhcCC-CccEEEecccccccCCCCccCCcccccEEEecccc---cccccc-cccCcccccEEeccCccccccCc-hhh
Q 047556 595 NLLSKCR-KLRVLSLSRSYITELPKGSMSGWKHLRYLNLSHTW---IRNLPK-STCSLINLQILLLRGCYYLLKLP-SKM 668 (1175)
Q Consensus 595 ~~~~~~~-~Lr~L~Ls~~~i~~l~~~~~~~l~~L~~L~L~~~~---i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i 668 (1175)
.+|.+++ .|+.+.+.. .++.+...+|.++.+|+.+.+..+. ++.++. +|.++.+|+.+.+..+ +..++ ..+
T Consensus 57 ~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTT
T ss_pred hhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhh
Confidence 3566664 588888864 3777777888888888888887653 555643 4667777777766553 33443 235
Q ss_pred hccCCCceeeecC
Q 047556 669 RKLINLRHLDITG 681 (1175)
Q Consensus 669 ~~L~~L~~L~l~~ 681 (1175)
..+.+|+.+.+..
T Consensus 134 ~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 134 HHCEELDTVTIPE 146 (394)
T ss_dssp TTCTTCCEEECCT
T ss_pred hhhcccccccccc
Confidence 6667777776643
No 193
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.74 E-value=3.5e-05 Score=76.75 Aligned_cols=122 Identities=18% Similarity=0.142 Sum_probs=65.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhc
Q 047556 187 RHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESIT 266 (1175)
Q Consensus 187 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 266 (1175)
....++.+.+++..-.. .....+.|+|++|+||||||+.++....... .+ .+++++ ..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~-~~~~~~------~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GI-RGYFFD------TKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CC-CCCEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CC-eEEEEE------HHHHHHHHHHHhc
Confidence 34455555555543221 2236899999999999999999988643111 11 223333 3444444444433
Q ss_pred CCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHH--HHhcccCCC-CCCcEEEEecCCh
Q 047556 267 YSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWE--DLKAPLMGA-APNSKIVVTTRHS 329 (1175)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 329 (1175)
..... ..... +. +.-+|||||++....+.|. .+...+... ..|..||+||...
T Consensus 88 ~~~~~-----~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 88 EGKDT-----KFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HTCCS-----HHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CchHH-----HHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 22111 11222 22 4568999999743334443 222222211 2467888888743
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.74 E-value=0.00047 Score=76.89 Aligned_cols=186 Identities=11% Similarity=0.033 Sum_probs=100.6
Q ss_pred CccccchhhHHHHHHHHhcC----CC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSAN----SP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~----~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
..++|.+..++++.+.+... .. .+ ...+.|.|+|++|+|||++|+++++.... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~------~~~~i~~~~l~~- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGA------TFFSISASSLTS- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTC------EEEEEEGGGGCC-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCC------eEEEEehHHhhc-
Confidence 46899999999998876421 00 00 23467899999999999999999875321 223444432111
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHH-HHHHhcCccEEEEEecCccCCc-----------ccHHHHhcccCC----CCC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQ-LKKAVDGKKIFLVLDDVWNEDY-----------GLWEDLKAPLMG----AAP 318 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~~r~LlVlDdv~~~~~-----------~~~~~l~~~l~~----~~~ 318 (1175)
. . .......... +...-..++.+|+||+++.-.. .....+...+.. ...
T Consensus 156 -------------~-~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 -------------K-W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp -------------S-S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred -------------c-c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 0 0011111112 2222235678999999943100 112233322221 123
Q ss_pred CcEEEEecCChhhh-hhc--CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC-chHHHHHHHH
Q 047556 319 NSKIVVTTRHSHVA-STM--EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG-LPLAAKALGG 394 (1175)
Q Consensus 319 gs~iivTtr~~~v~-~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 394 (1175)
+..||.||...... ..+ .-...+.+...+.++..+++...+........ .+....|++.+.| .+-.|..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45566566543221 111 12246788888888888888776532221111 2345678888888 5556655543
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.74 E-value=0.0006 Score=75.83 Aligned_cols=187 Identities=13% Similarity=0.043 Sum_probs=98.4
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSAN----S--PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
..++|.+..++.+.+.+... . ..+....+-|.++|++|+|||+||+++++.... . .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---T---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC---E---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---C---EEEeeHH------
Confidence 46899999999998876311 0 001022345889999999999999999985321 1 1223221
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcc-----------cHHHHhcccC---CCCCCcE
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYG-----------LWEDLKAPLM---GAAPNSK 321 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~ 321 (1175)
.+. .... ..........+...-..++.+|+||+++.-... ....+...+. ....+..
T Consensus 119 ~l~----~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DLV----SKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HHH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HHh----hhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 111 1100 011111112222222457899999999642210 0122222222 1234556
Q ss_pred EEEecCChhhhh-hc--CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC-chHHHHHHH
Q 047556 322 IVVTTRHSHVAS-TM--EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG-LPLAAKALG 393 (1175)
Q Consensus 322 iivTtr~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 393 (1175)
||.||....... .+ .-...+.+...+.++-.+++............ ......|++.+.| .+-.|..+.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776543111 11 23356788888888888888877643221111 2234568888888 454454443
No 196
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00018 Score=77.58 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=92.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccc-ccccccceEEEEEeCC-CCCHHHHHHHHHH
Q 047556 186 GRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKE-VETFKFDIKAWVCVSE-DFDVLSISRAILE 263 (1175)
Q Consensus 186 gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~s~-~~~~~~~~~~il~ 263 (1175)
|-+..++.+...+..+ +.+...++|++|+||||+|+.+.+... ....+.+ ..++..+. ...+. ..+++.+
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id-~ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGID-DIRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHH-HHHHHHH
Confidence 3455666777777653 247899999999999999999986421 1110222 34444332 22222 2233433
Q ss_pred HhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh-hhhhhcCCCCeee
Q 047556 264 SITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS-HVASTMEPIQQYN 342 (1175)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~ 342 (1175)
.+.... ..+++-++|+|+++.-.....+.+...+....+.+.+|++|.++ .+...+..- .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 332211 13567899999997766666777777776555677777666544 344333344 899
Q ss_pred CCCCChhhhHHHHHhhh
Q 047556 343 LRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 343 l~~L~~~e~~~lf~~~~ 359 (1175)
+.++++++..+.+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999887765
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.66 E-value=0.0011 Score=72.09 Aligned_cols=185 Identities=15% Similarity=0.056 Sum_probs=97.1
Q ss_pred CccccchhhHHHHHHHHhcCC------CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSANS------PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
..++|.+..++.+.+.+.... .......+.+.|+|++|+|||++|+++++.... ..+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~------~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA------TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC------EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC------CeEEeeHHHHhh--
Confidence 468999999999988763310 000012367899999999999999999875321 123344332110
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHH-HHHHhcCccEEEEEecCccCCcc-----------cHHHHhcc---cCCC--CC
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQ-LKKAVDGKKIFLVLDDVWNEDYG-----------LWEDLKAP---LMGA--AP 318 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~~r~LlVlDdv~~~~~~-----------~~~~l~~~---l~~~--~~ 318 (1175)
.. .......... +......++.+|++|++..-... ....+... ++.. +.
T Consensus 93 ------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 ------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 0111122222 22222457789999999542110 01112211 1111 13
Q ss_pred CcEEEEecCChhhhh-hc--CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHH
Q 047556 319 NSKIVVTTRHSHVAS-TM--EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKAL 392 (1175)
Q Consensus 319 gs~iivTtr~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 392 (1175)
+..||.||....... .. .-...+.+...+.++-.+++...+........ ......+++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 456666776543211 10 12246777777777777777766532221111 2234678888888775 45443
No 198
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.63 E-value=0.0012 Score=72.86 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=93.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAI 261 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (1175)
..++|.+..++.+...+......+ .....+.++|++|+||||||+.++..... .|. ....+-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---~~~---~~sg~~~~~~~------ 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRG-EVLDHVLLAGPPGLGKTTLAHIIASELQT---NIH---VTSGPVLVKQG------ 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTC---CEE---EEETTTCCSHH------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEE---EEechHhcCHH------
Confidence 468898877777776664321001 23356899999999999999999985322 111 11111000111
Q ss_pred HHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCC------------------CCcEEE
Q 047556 262 LESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAA------------------PNSKIV 323 (1175)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 323 (1175)
+.. .+...+ .++-++++|++..-.....+.+...+.... +...++
T Consensus 92 ---------------~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 92 ---------------DMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ---------------HHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ---------------HHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 111 111112 234577788875433223333322211110 011222
Q ss_pred -EecCChhhhhhcC--CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 324 -VTTRHSHVASTME--PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 324 -vTtr~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
.|++...+...+. ....+.+++.+.++-.+++.+.+..... . ...+.+..|+++++|.|-.+..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~---~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-E---IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-C---BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHhcCCChHHHHHH
Confidence 3444433322111 1235789999999999999877632221 1 12345778999999999655433
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.63 E-value=0.00066 Score=77.97 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=99.0
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSAN----S--PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
..++|.+..++.+.+.+... . ..+....+-|.++|++|+|||+||+++++... ..-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-------~~~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-------NSTFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-------SSEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-------CCCEEEEeHHH---
Confidence 46899999999988876310 0 00002346789999999999999999998531 11223333221
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC-------ccc----HHHHhcccCC---CCCCcE
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED-------YGL----WEDLKAPLMG---AAPNSK 321 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-------~~~----~~~l~~~l~~---~~~gs~ 321 (1175)
+.... .+.. ......+. ...-..++.+|+||+++.-. ... ...+...+.. ...+..
T Consensus 204 -l~~~~---~g~~---~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LVSKW---LGES---EKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ------------C---CCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HHhhh---cchH---HHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11000 1111 11122222 22223578899999996421 011 1223333322 234566
Q ss_pred EEEecCChhhhh-h-c-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC-chHHHHHHH
Q 047556 322 IVVTTRHSHVAS-T-M-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG-LPLAAKALG 393 (1175)
Q Consensus 322 iivTtr~~~v~~-~-~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 393 (1175)
||.||....... . . .-...+.+...+.++-.++|..+......... ......|++.+.| .+-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 776776543221 1 1 22346778888888888888776632211111 2234568888888 444555443
No 200
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.58 E-value=0.0017 Score=73.84 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=57.8
Q ss_pred ccCCCCcccEEEeeCCCCCCCCCCCCC--CCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhh
Q 047556 993 DLHKLNSLEHLYLQRCPSIVRFPEEGF--PNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEE 1070 (1175)
Q Consensus 993 ~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~ 1070 (1175)
.|.+++.|+.+.+.+. +..+....+ +++|+.+.+.. ....+. ...|.++++|+.++|.++ +..+.+..
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~-~i~~I~---~~aF~~c~~L~~i~lp~~----v~~I~~~a 329 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS-RITELP---ESVFAGCISLKSIDIPEG----ITQILDDA 329 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT-TCCEEC---TTTTTTCTTCCEEECCTT----CCEECTTT
T ss_pred eeeecccccEEecccc--cceecCcccccccccccccCCC-cccccC---ceeecCCCCcCEEEeCCc----ccEehHhH
Confidence 5677777777777553 333333322 34555555531 122221 335666677777776542 44555544
Q ss_pred hhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccC
Q 047556 1071 MRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDD 1111 (1175)
Q Consensus 1071 ~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 1111 (1175)
| ...++|+++.|-. +++.+....|.++++|+.+++.+
T Consensus 330 F--~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 330 F--AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp T--TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred h--hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 4 3445666666643 46666656666677777766655
No 201
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.56 E-value=6e-05 Score=83.75 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=5.7
Q ss_pred CCccEEEEec
Q 047556 878 SSLKRLEIEN 887 (1175)
Q Consensus 878 ~~L~~L~l~~ 887 (1175)
++|+.|.+.+
T Consensus 139 ~~L~~L~l~~ 148 (362)
T 2ra8_A 139 AHFEGLFWGD 148 (362)
T ss_dssp TTCSEEEECC
T ss_pred chhhheeecC
Confidence 4666666544
No 202
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=1.4e-05 Score=79.99 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=46.8
Q ss_pred HHHhhhcCCCccEEEeccc-cccc-----CCCCccCCcccccEEEecccccc-----cccccccCcccccEEeccCcccc
Q 047556 593 FSNLLSKCRKLRVLSLSRS-YITE-----LPKGSMSGWKHLRYLNLSHTWIR-----NLPKSTCSLINLQILLLRGCYYL 661 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~-~i~~-----l~~~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l 661 (1175)
+...+...+.|+.|+|++| .+.. +. ..+....+|++|+|++|.|. .+...+...++|++|+|++| .+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 3444555666666666666 5432 11 23344556666666666554 23344445556666666666 33
Q ss_pred cc-----CchhhhccCCCceeee--cCcc
Q 047556 662 LK-----LPSKMRKLINLRHLDI--TGAY 683 (1175)
Q Consensus 662 ~~-----lp~~i~~L~~L~~L~l--~~~~ 683 (1175)
+. +...+...++|++|++ ++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 22 3344555556666666 5555
No 203
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.54 E-value=0.0014 Score=74.25 Aligned_cols=186 Identities=14% Similarity=0.066 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSP------SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
..++|.+..++.+.+.+..... ......+-|.|+|++|+|||++|+++++.... ..+.++++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~------~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA------TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC------EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC------cEEEeeHHHhhc--
Confidence 5689999999999987732100 00012367899999999999999999874221 123333322111
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC-------c----ccHHHHhcccC---C-CCCCc
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED-------Y----GLWEDLKAPLM---G-AAPNS 320 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-------~----~~~~~l~~~l~---~-~~~gs 320 (1175)
.. .+ .........+...-...+.+|+||+++.-. . .....+...+. . .....
T Consensus 187 ~~-------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 187 KY-------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred cc-------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 00 00 001111112222223456899999995320 0 01112222221 1 12334
Q ss_pred EEEEecCChhhhh-h-c-CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchH-HHHHH
Q 047556 321 KIVVTTRHSHVAS-T-M-EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPL-AAKAL 392 (1175)
Q Consensus 321 ~iivTtr~~~v~~-~-~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 392 (1175)
.||.||....... . . .-...+.+...+.++-.+++...+........ .+....|++.+.|..- +|..+
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 5665665432211 1 1 12246788889999998988877643222111 2245678888888543 55444
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.50 E-value=0.0011 Score=71.96 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=97.0
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANS-------PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
..++|.+..++++.+.+...- ..+....+.+.|+|++|+|||+||+++++.... .| +.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~---~~-----i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NF-----ISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---EE-----EEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC---CE-----EEEE----h
Confidence 468999998888888764310 000023367899999999999999999985321 11 2222 1
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC--------------cccHHHHhcccCC--CCC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED--------------YGLWEDLKAPLMG--AAP 318 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~ 318 (1175)
..+.... .+.. .......+.......+.+|++|+++.-. ......+...+.. ...
T Consensus 83 ~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTMW---FGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 2222211 1111 1112222333334568999999995310 0012333333321 223
Q ss_pred CcEEEEecCChhhhh-h-cC---CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCchHH
Q 047556 319 NSKIVVTTRHSHVAS-T-ME---PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLPLA 388 (1175)
Q Consensus 319 gs~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1175)
+..||.||....... . .. -...+.+...+.++-.+++......... ..+... ..+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 567777776553221 1 11 2356888999988888888766532211 111122 3456667776543
No 205
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.49 E-value=0.00025 Score=82.06 Aligned_cols=148 Identities=15% Similarity=0.139 Sum_probs=78.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc--ccc-c-eEEEEEeCCCCCHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET--FKF-D-IKAWVCVSEDFDVLSI 257 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~s~~~~~~~~ 257 (1175)
+.++||+.+++.+...+..... .-+.++|++|+|||++|+.+++...... ... + ..+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~------~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 3599999999999999976322 3467999999999999999987531100 000 1 11222222
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhhhh---
Q 047556 258 SRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVAST--- 334 (1175)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~--- 334 (1175)
...... ....... .+...-..++.+|++|. ..+....+...+.. ...++|.||........
T Consensus 246 -----~~~~g~--~e~~~~~---~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGE--FEDRLKK---VMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHHH---HHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 000000 0011122 22222235678999992 12222233333322 24566666655442111
Q ss_pred ----cCCCCeeeCCCCChhhhHHHHHhhh
Q 047556 335 ----MEPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 335 ----~~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
..-...+.+.+.+.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1122468999999999999998654
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.49 E-value=0.00011 Score=92.18 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=80.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc--cc--cceEEEEEeCCCCCHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET--FK--FDIKAWVCVSEDFDVLSI 257 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~--f~~~~wv~~s~~~~~~~~ 257 (1175)
..++||+.+++++.+.+..... .-+.++|++|+|||++|+.+++...... .. -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~------~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSC------CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 4589999999999999976432 3468999999999999999987531100 00 11233343321100
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHHHHh-c-CccEEEEEecCccCC--------cccHHHHhcccCCCCCCcEEEEecC
Q 047556 258 SRAILESITYSSCDLKALNEVQVQLKKAV-D-GKKIFLVLDDVWNED--------YGLWEDLKAPLMGAAPNSKIVVTTR 327 (1175)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr 327 (1175)
+ .. ...+.......+.+.+ . +++.+|++|++..-. .+....+...+ .. .+..+|.||.
T Consensus 240 --------g-~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~ 307 (854)
T 1qvr_A 240 --------G-AK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEEC
T ss_pred --------c-Cc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecC
Confidence 0 00 0011222222222222 2 468999999995421 11111122222 12 2345665555
Q ss_pred Chhhh-----hhc-CCCCeeeCCCCChhhhHHHHHhh
Q 047556 328 HSHVA-----STM-EPIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 328 ~~~v~-----~~~-~~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
..... ..+ .-...+.+.+++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 43321 111 12345889999999999988643
No 207
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.48 E-value=7e-05 Score=74.73 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=85.3
Q ss_pred Hhhhcccceeeeccccc-CCCCccccccCCCcccCchhhHHHhhhcCCCccEEEecccccccCC----CCccCCcccccE
Q 047556 555 EVMHEVQHLRTFLPVSI-SSSGVYESISSSGVYDKNDLVFSNLLSKCRKLRVLSLSRSYITELP----KGSMSGWKHLRY 629 (1175)
Q Consensus 555 ~~~~~~~~Lr~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~Ls~~~i~~l~----~~~~~~l~~L~~ 629 (1175)
..+...+.|++|.+.++ .. .......+...+...++|++|+|++|.+..-. ...+...+.|++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i------------~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~ 97 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNI------------PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS 97 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTC------------CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HHHhcCCCCCEEEecCCCCC------------CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCE
Confidence 44566788888877654 31 00112345567788899999999999886421 134555678999
Q ss_pred EEeccccccc-----ccccccCcccccEEec--cCcccccc-----CchhhhccCCCceeeecCccc
Q 047556 630 LNLSHTWIRN-----LPKSTCSLINLQILLL--RGCYYLLK-----LPSKMRKLINLRHLDITGAYL 684 (1175)
Q Consensus 630 L~L~~~~i~~-----lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~ 684 (1175)
|+|++|.|.. +...+...+.|++|+| ++| .++. +...+...++|++|++++|.+
T Consensus 98 L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred EECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 9999999873 6777888899999999 777 4432 455567779999999999873
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.48 E-value=8.4e-05 Score=75.65 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=61.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 047556 189 QDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYS 268 (1175)
Q Consensus 189 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~ 268 (1175)
..++.+.+++...... ...+.+.|+|++|+|||+||+++++.... ....++|++++ .+...+...+...
T Consensus 36 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~ 104 (202)
T 2w58_A 36 KAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVP------ELFRELKHSLQDQ 104 (202)
T ss_dssp HHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHH------HHHHHHHHC---C
T ss_pred HHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhH------HHHHHHHHHhccc
Confidence 3455556666543211 12267899999999999999999986433 22345666543 3444443322211
Q ss_pred CCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHH--Hhc-ccCCC-CCCcEEEEecCC
Q 047556 269 SCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWED--LKA-PLMGA-APNSKIVVTTRH 328 (1175)
Q Consensus 269 ~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 328 (1175)
........+. + .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 105 -----~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 -----TMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp -----CCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred -----hHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1222222222 2 2399999996543333321 111 11111 235578888874
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.46 E-value=6.5e-05 Score=71.30 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=33.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 578999998888887754221 1134789999999999999999874
No 210
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.43 E-value=6.3e-05 Score=72.76 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=37.2
Q ss_pred cCCCCcccEEEeeCCCCCCCCCCCC------CCCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCC
Q 047556 994 LHKLNSLEHLYLQRCPSIVRFPEEG------FPNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCD 1059 (1175)
Q Consensus 994 ~~~l~~L~~L~l~~c~~l~~lp~~~------~~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~ 1059 (1175)
+..|++|++|+|++|..+++-.-.. ..++|++|+++ .|.++++..-..+.++++|++|+|++|+
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls--~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII--SCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE--SCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC--CCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 4678888888888887665421100 01246666666 4555554433345556666666666654
No 211
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=7.1e-05 Score=78.49 Aligned_cols=81 Identities=25% Similarity=0.218 Sum_probs=61.5
Q ss_pred CCcccccEEEecccccccc---cccccCcccccEEeccCccccccCchhhhccC--CCceeeecCccccccCCc------
Q 047556 622 SGWKHLRYLNLSHTWIRNL---PKSTCSLINLQILLLRGCYYLLKLPSKMRKLI--NLRHLDITGAYLIKEMPF------ 690 (1175)
Q Consensus 622 ~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~------ 690 (1175)
.++++|++|+|++|.|..+ |..+..+++|++|+|++| .+..+ ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4678999999999999865 466789999999999999 66665 3366666 999999999997665652
Q ss_pred -cCCCCCCccccCce
Q 047556 691 -GMKELKNLQALSNF 704 (1175)
Q Consensus 691 -~~~~L~~L~~L~~~ 704 (1175)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 24556666666543
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.40 E-value=0.00096 Score=77.02 Aligned_cols=185 Identities=15% Similarity=0.146 Sum_probs=99.6
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANSP-------SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
..++|.+..++++.+++..... -+....+-|.|+|++|+|||++|+++++.... . .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~---~---fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---F---FFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS---E---EEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC---C---EEEEEch-----
Confidence 3589999999999887753200 00022356899999999999999999875321 2 2333321
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCc-----------ccHHHHhcccCC--CCCCcE
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDY-----------GLWEDLKAPLMG--AAPNSK 321 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~ 321 (1175)
. +...+ ...........+.....+++.+|+||+++.-.. .....+...+.. ...+..
T Consensus 273 -~----l~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 -E----IMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -H----HHTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -H----hhhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 11110 011112223334444456788999999932100 111223333321 223456
Q ss_pred EEEecCChhh-hhhc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc-hHHHHHH
Q 047556 322 IVVTTRHSHV-ASTM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL-PLAAKAL 392 (1175)
Q Consensus 322 iivTtr~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 392 (1175)
||.||..... ...+ .-...+.+...+.++-.+++..++..... ..+..+ .++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 6667665532 2111 22346889999999999999877632221 111122 4566777764 5444443
No 213
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.37 E-value=0.0013 Score=71.96 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcC--CCC------CCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSAN--SPS------GHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~--~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++|++..++.+...+... ... .......+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999988877541 000 00123467899999999999999998753
No 214
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.37 E-value=0.0002 Score=79.55 Aligned_cols=14 Identities=0% Similarity=-0.016 Sum_probs=8.2
Q ss_pred CCCccEEEEeCCCC
Q 047556 808 YSKMEVLILENCEN 821 (1175)
Q Consensus 808 l~~L~~L~L~~~~~ 821 (1175)
+++|+.|++++|.+
T Consensus 306 l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 306 IKHLKFINMKYNYL 319 (362)
T ss_dssp HTTCSEEECCSBBC
T ss_pred CCcceEEECCCCcC
Confidence 45566666666554
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.34 E-value=0.00071 Score=74.18 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=65.7
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.+++..... -...+.+.++...... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGGCCSTT-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeecccccccc-cHH
Confidence 477888888888887765310 000223589999999999999999998853221 1224555554332211 111
Q ss_pred HHHHHhcCCCCC--ccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhccc
Q 047556 260 AILESITYSSCD--LKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPL 313 (1175)
Q Consensus 260 ~il~~l~~~~~~--~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l 313 (1175)
.+ ++..... ..........+. ....-+++||++..-.......+...+
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred Hh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 11 2221110 000112222222 234579999999765555555555444
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.29 E-value=0.00037 Score=74.34 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.++|++..+.++.+.+...... ...|.|+|.+|+|||++|+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~----~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPL----DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTS----CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 5789999998888766542211 1457899999999999999999753
No 217
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0048 Score=68.03 Aligned_cols=179 Identities=21% Similarity=0.148 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSAN----S---PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
.++.|-++.+++|.+.+.-+ + .-+....+-|.++|++|.|||.||+++++.... .| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC---KF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC---EE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC---Cc---eEEEhHHhhc-
Confidence 45788888888887755321 0 001133456889999999999999999985432 22 3333332110
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC--------cc--c----HHHHhcccCC--CCC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED--------YG--L----WEDLKAPLMG--AAP 318 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--------~~--~----~~~l~~~l~~--~~~ 318 (1175)
.........+...+...-...+++|++|+++.-- .. . ...+...+.. ...
T Consensus 221 --------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 --------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred --------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 0011111111122222224678999999996421 00 1 1122222322 234
Q ss_pred CcEEEEecCChhhhh-----hcCCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch
Q 047556 319 NSKIVVTTRHSHVAS-----TMEPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 319 gs~iivTtr~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1175)
+..||.||...+... .-.-+..+.+..-+.++-.++|..+...... ..+..+ ..|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCCC
Confidence 556677776554322 1124568889888888888888766532211 122222 45777777743
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0026 Score=71.32 Aligned_cols=178 Identities=20% Similarity=0.163 Sum_probs=90.3
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSANS-------PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
.++.|-+..+++|.+.+...- .-|....+-|.++|++|+|||+||+++++.... .| +.|+.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~---~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA---AF---IRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC---EE---EEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---Ce---EEEecchhhc-
Confidence 468899988888877653210 001134466899999999999999999985432 22 3343332110
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccC----------Cccc----HHHHhcccCC--CCC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNE----------DYGL----WEDLKAPLMG--AAP 318 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~----------~~~~----~~~l~~~l~~--~~~ 318 (1175)
.........+...+...-...++++++|+++.- .... ...+...+.. ...
T Consensus 245 --------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 --------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp --------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred --------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 001111111122222222467899999998520 0011 1222222221 234
Q ss_pred CcEEEEecCChhhhh-h-cC---CCCeeeCCCCChhhhH-HHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 319 NSKIVVTTRHSHVAS-T-ME---PIQQYNLRCLSDEDCW-SLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 319 gs~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~e~~-~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
+..||.||...+... . .. -...+.+..+++.+++ ++|..+.... .......+ ..+++.+.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~-~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM-SLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS-CBCTTCCH----HHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC-CCCcccCH----HHHHHHCCCC
Confidence 556777776554322 1 11 2345777667655554 4555444221 11122222 4566777664
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.21 E-value=0.0019 Score=80.32 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=86.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEE-EeCCCCCHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWV-CVSEDFDVLSI 257 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv-~~s~~~~~~~~ 257 (1175)
..++||+.+++++.+.+.... ..-+.++|.+|+|||++|+.+++...... ......+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 468999999999999987542 24568999999999999999987531110 012233321 11110
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHHHHh-cCccEEEEEecCccC--------CcccHHHHhcccCCCCCCcEEEEecCC
Q 047556 258 SRAILESITYSSCDLKALNEVQVQLKKAV-DGKKIFLVLDDVWNE--------DYGLWEDLKAPLMGAAPNSKIVVTTRH 328 (1175)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~ 328 (1175)
+.... .....+.....+.+.+ ..++.+|++|++..- ...+...+...+... .+..+|.+|..
T Consensus 254 -------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_dssp --------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECH
T ss_pred -------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCc
Confidence 00000 1112232233333333 346799999999642 011112223233222 34567777665
Q ss_pred hhhhhhc-------CCCCeeeCCCCChhhhHHHHHhhh
Q 047556 329 SHVASTM-------EPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 329 ~~v~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
....... .-...+.+...+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4432111 112368889999998888886543
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.19 E-value=0.00046 Score=74.80 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3588999999998888765332 1245789999999999999999874
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.17 E-value=0.00014 Score=69.25 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=27.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVS 249 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 249 (1175)
..++|+|+.|+|||||++.++......+ + .++++...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g--~-~~~~~~~~ 73 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAG--K-NAAYIDAA 73 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTT--C-CEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC--C-cEEEEcHH
Confidence 5899999999999999999998543221 1 24556544
No 222
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.16 E-value=0.0021 Score=74.22 Aligned_cols=92 Identities=10% Similarity=0.021 Sum_probs=57.3
Q ss_pred EEEEecCccCCcccHHHHhcccCCCCCCcEEE-Ee---------cC----C----hhhhhhcCCCCeeeCCCCChhhhHH
Q 047556 292 FLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIV-VT---------TR----H----SHVASTMEPIQQYNLRCLSDEDCWS 353 (1175)
Q Consensus 292 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vT---------tr----~----~~v~~~~~~~~~~~l~~L~~~e~~~ 353 (1175)
++++|++..-+.+..+.+...+...... -+| .| |. . +.+...+ ..+.+.+++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 8999999776667777887777655444 344 44 22 1 0122222 457999999999999
Q ss_pred HHHhhhccCCCCCcchhHHHHHHHHHHhc-CCchHHHHH
Q 047556 354 LFMMHAFVSRDLTAQQISDLFRDKVVGKC-RGLPLAAKA 391 (1175)
Q Consensus 354 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPlai~~ 391 (1175)
++...+....... ..+....|++.+ +|.|-....
T Consensus 374 iL~~~~~~~~~~~----~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 374 IIKIRAQTEGINI----SEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHHHHTCCB----CHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHhCCCC----CHHHHHHHHHHccCCCHHHHHH
Confidence 9987653222111 123456677777 787765443
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.14 E-value=0.00095 Score=82.81 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=79.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
..++||+.+++++...+..... .-+.++|++|+|||++|+.+++...... ...+.. ++.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~------~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC----------
T ss_pred CCccCchHHHHHHHHHHhCCCC------CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc--------
Confidence 4699999999999999976322 3478999999999999999987531100 001111 111111
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhhhhc---
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVASTM--- 335 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--- 335 (1175)
+... .......+...+......++.+|++|.. .+....+...+. ....++|.||.........
T Consensus 245 -------g~~~-~G~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 -------GTKY-RGEFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred -------cccc-cchHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 0000 0000111222223333467889999921 122222333332 2245677666655421110
Q ss_pred ----CCCCeeeCCCCChhhhHHHHHhhh
Q 047556 336 ----EPIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 336 ----~~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
.-...+.+...+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 122568999999999999998554
No 224
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.13 E-value=0.011 Score=66.76 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=68.7
Q ss_pred ccCCCCcccEEEeeCCCCCCCCCCCCC--CCCcceEEEeccCccchhhhhhhccCCCCCCCeeEeccCCCccccccchhh
Q 047556 993 DLHKLNSLEHLYLQRCPSIVRFPEEGF--PNNLVELKIRGVDVKMYKAAIQWGLHRLTSLRRLWIEGCDDDEAECFPDEE 1070 (1175)
Q Consensus 993 ~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~ 1070 (1175)
.+.++..|+.+.+..+ ++.+....+ +.+|+.+.+.. ....+ ....|.++++|+.+.+.++. +..+++..
T Consensus 235 ~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i---~~~aF~~c~~L~~i~l~~~~---i~~I~~~a 305 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTV---PYLLCSGCSNLTKVVMDNSA---IETLEPRV 305 (379)
T ss_dssp TTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEE---CTTTTTTCTTCCEEEECCTT---CCEECTTT
T ss_pred cccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceec---cccccccccccccccccccc---cceehhhh
Confidence 4567777777777653 455544432 35677766642 12222 23357777888888887643 55566655
Q ss_pred hhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCCCCCcCCC
Q 047556 1071 MRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCPNLKSFPE 1120 (1175)
Q Consensus 1071 ~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~ 1120 (1175)
| ...++|+++.|.. +++.+....|.++++|+++.|.. .++.+..
T Consensus 306 F--~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 306 F--MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp T--TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred h--cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence 4 3456777777754 57777767777777777777743 3444443
No 225
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0085 Score=67.26 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHhcC---CC----CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSAN---SP----SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~---~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
.++.|-++.+++|.+.+.-+ .+ -+....+=|.++|++|+|||.||+++++.... .| +.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~---~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA---NF---IFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---EE---EEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CE---EEEehhhhcc-
Confidence 45788888888887765321 00 01134567899999999999999999985432 22 3333332110
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC----------cc----cHHHHhcccCC--CCC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED----------YG----LWEDLKAPLMG--AAP 318 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------~~----~~~~l~~~l~~--~~~ 318 (1175)
.........+.......-...+++|++|+++.-- .. ....+...+.. ...
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 0011111111122222224678999999996310 00 11223333322 234
Q ss_pred CcEEEEecCChhhhh-hc-C---CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch
Q 047556 319 NSKIVVTTRHSHVAS-TM-E---PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 319 gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1175)
+..||.||...+... .+ . -...+.+..-+.++-.++|..+...... ..+..+ ..+++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 567888887665432 11 1 2356788877777777788766532221 112222 45777777743
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.06 E-value=0.0076 Score=63.65 Aligned_cols=183 Identities=15% Similarity=0.116 Sum_probs=90.8
Q ss_pred CccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVS---ANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
..++|.+..++++.+.+. .... -+....+-+.|+|++|+||||+|+.+++.... .| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~---~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---PF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC---CE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---CE---EEEeHHHHHH--
Confidence 468999888777766432 1100 00012245889999999999999999875321 22 3333221100
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC----------cc----cHHHHhcccCC--CCCC
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED----------YG----LWEDLKAPLMG--AAPN 319 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------~~----~~~~l~~~l~~--~~~g 319 (1175)
.. ...........+.......+.++++|+++.-. .. ....+...+.. ...+
T Consensus 84 --------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 --------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp --------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred --------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 00111222223333334567899999983210 00 11222222211 1234
Q ss_pred cEEEEecCChhhh-hhc-C---CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCC-chHHHH
Q 047556 320 SKIVVTTRHSHVA-STM-E---PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRG-LPLAAK 390 (1175)
Q Consensus 320 s~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~ 390 (1175)
..||.||...+.. ... . -...+.+...+.++-.+++........- ..... ...+++.+.| .+--|.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHHHHH
Confidence 5677777655322 111 1 2346777777877777777665422111 11111 2346677777 554443
No 227
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0069 Score=67.69 Aligned_cols=177 Identities=19% Similarity=0.137 Sum_probs=93.9
Q ss_pred ccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 183 TVFGRHQDKAKILEMVSA----NS---PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
++.|-++.+++|.+.+.- ++ .-+....+-|.++|++|+|||.||+++++.... .| +.|..+.-.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA---TF---IRVIGSELV--- 280 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---EE---EEEEGGGGC---
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC---Ce---EEEEhHHhh---
Confidence 578888888888775421 00 001134567889999999999999999985432 22 333332210
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC------cc--------cHHHHhcccCC--CCCC
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED------YG--------LWEDLKAPLMG--AAPN 319 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------~~--------~~~~l~~~l~~--~~~g 319 (1175)
. .........+...+...-...+++|++|+++.-- .. ....+...+.. ...+
T Consensus 281 -----------s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 281 -----------Q-KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -----------C-CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -----------c-ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 0 0011111111222222234678999999985321 00 01112222222 2234
Q ss_pred cEEEEecCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 320 SKIVVTTRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 320 s~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
..||.||...+... .+ .-...+.+...+.++-.++|..+...... ..+-.+ ..|++.+.|.
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNS 414 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCC
Confidence 55666776554322 11 23467888888888888888766532211 111222 4577777774
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.95 E-value=0.00059 Score=84.64 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=84.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCC---CCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSG---HANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSIS 258 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (1175)
..++|.+..++.+...+....... ......+.++|++|+|||++|+++++.... .-...+.++++...+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~---~~~~~i~i~~s~~~~~~~~- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG---DEESMIRIDMSEYMEKHST- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS---CTTCEEEEEGGGGCSSCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---CCcceEEEechhccccccc-
Confidence 358999999988888776432111 022347999999999999999999875311 1223445555432111000
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCC-----------CCCcEEEEecC
Q 047556 259 RAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGA-----------APNSKIVVTTR 327 (1175)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr 327 (1175)
........++ +...-+|+||++..-..+....+...+..+ ....+||+||.
T Consensus 567 ---------------~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 ---------------SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ---------------C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ---------------ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0011111222 123458999999766555555555444321 23568888887
Q ss_pred Chh-----h----hhhcC------CCCeeeCCCCChhhhHHHHHhh
Q 047556 328 HSH-----V----ASTME------PIQQYNLRCLSDEDCWSLFMMH 358 (1175)
Q Consensus 328 ~~~-----v----~~~~~------~~~~~~l~~L~~~e~~~lf~~~ 358 (1175)
... + ...+. -...+.+.++++++-.+++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 311 1 11111 1246777888777766665543
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.93 E-value=0.0057 Score=69.91 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=94.7
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMVSANSP------SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.+++|.+..++++.+....-.. -+....+-|.|+|++|+|||+||++++..... .| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~---~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV---PF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC---CE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC---Ce---eeCCHHHHHHH-
Confidence 4689998877777665432100 00012234789999999999999999985322 22 23333321110
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCCc----------c----cHHHHhcccCC--CCCC
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDY----------G----LWEDLKAPLMG--AAPN 319 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----------~----~~~~l~~~l~~--~~~g 319 (1175)
+ ...........+.....+.+.+|++|+++.-.. . ....+...+.. ...+
T Consensus 89 ---------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 001111222333444456789999999954211 1 12223322221 1245
Q ss_pred cEEEEecCChhhhh-h-cC---CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch
Q 047556 320 SKIVVTTRHSHVAS-T-ME---PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 320 s~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1175)
..||.||...+... . .. -...+.+...+.++-.+++..++..... ..+.. ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 66777777665432 1 11 2237788888877777787766532211 11111 234777888866
No 230
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.92 E-value=0.00057 Score=73.00 Aligned_cols=52 Identities=27% Similarity=0.373 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPS------GHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++|.+..++++.+.+..-... +....+-+.|+|++|+|||++|+++++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 46899988888877765410000 00112337799999999999999999853
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.83 E-value=0.025 Score=62.28 Aligned_cols=151 Identities=13% Similarity=0.178 Sum_probs=83.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAIL 262 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il 262 (1175)
.++|++..++.+...+... .-+.++|++|+|||+||+.+++.... .| ..+.+.......++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~~~~---~~---~~i~~~~~~~~~~l~g~-- 91 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKTMDL---DF---HRIQFTPDLLPSDLIGT-- 91 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHHTTC---CE---EEEECCTTCCHHHHHEE--
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHHhCC---Ce---EEEecCCCCChhhcCCc--
Confidence 5789999999888888653 34889999999999999999874321 22 23344333333332111
Q ss_pred HHhcCCCCCccchHHHHHHHHHHhcC--ccEEEEEecCccCCcccHHHHhcccCC-----------CCCCcEEEEecCCh
Q 047556 263 ESITYSSCDLKALNEVQVQLKKAVDG--KKIFLVLDDVWNEDYGLWEDLKAPLMG-----------AAPNSKIVVTTRHS 329 (1175)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iivTtr~~ 329 (1175)
....... ... ..-.+ ...++++|++..-.......+...+.. ......||.|+...
T Consensus 92 --~~~~~~~-~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 92 --MIYNQHK-GNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EEEETTT-TEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --eeecCCC-Cce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 0000000 000 00001 125899999976554444444333221 12345566566532
Q ss_pred h------hhhh-cCC-CCeeeCCCCChhhhHHHHHhhhc
Q 047556 330 H------VAST-MEP-IQQYNLRCLSDEDCWSLFMMHAF 360 (1175)
Q Consensus 330 ~------v~~~-~~~-~~~~~l~~L~~~e~~~lf~~~~~ 360 (1175)
. +... ..- ...+.+...+.++-.+++.....
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 2 1111 111 12588999999998888877654
No 232
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0041 Score=69.76 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSA----NS---PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
.++.|-++.+++|.+.+.. ++ .-|....+-|.++|++|.|||.||+++++.... . .+.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~---~---f~~v~~s~l~-- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA---T---FLKLAAPQLV-- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---E---EEEEEGGGGC--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC---C---EEEEehhhhh--
Confidence 4688999888888775422 10 001134567899999999999999999985332 2 2333332210
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHH-HHhcCccEEEEEecCccC------Cc----cc----HHHHhcccCCC--C
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLK-KAVDGKKIFLVLDDVWNE------DY----GL----WEDLKAPLMGA--A 317 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~------~~----~~----~~~l~~~l~~~--~ 317 (1175)
.. ... ..+...+.+. ..-...+++|++|+++.- .. .. ...+...+... .
T Consensus 253 ------------~~-~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 253 ------------QM-YIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ------------SS-CSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ------------hc-ccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 00 001 1111222222 122346899999998531 00 01 11233333322 2
Q ss_pred CCcEEEEecCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 318 PNSKIVVTTRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 318 ~gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
.+..||.||...+... .+ .-...+.+...+.++-.++|..+...... ..+-.+ ..|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 3456666887665432 11 12356888888888777888765532211 111122 4577777764
No 233
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.013 Score=64.74 Aligned_cols=177 Identities=17% Similarity=0.112 Sum_probs=93.2
Q ss_pred CccccchhhHHHHHHHHhcC---CC----CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSAN---SP----SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~---~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
.++.|-++.+++|.+.+.-. .+ -+....+=|.++|++|.|||.||+++++.... .| +.++.+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---~f---i~v~~s~l--- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA---TF---LRIVGSEL--- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---EE---EEEESGGG---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC---CE---EEEEHHHh---
Confidence 45788888888887755321 00 01134467899999999999999999985432 22 22332211
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHH-HHHhcCccEEEEEecCccCC----------ccc----HHHHhcccCC--CC
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQL-KKAVDGKKIFLVLDDVWNED----------YGL----WEDLKAPLMG--AA 317 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~~r~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~ 317 (1175)
.. ... .+.+...+.+ ...-...+++|++|+++.-- ... ...+...+.. ..
T Consensus 253 -----------~s-k~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 253 -----------IQ-KYL-GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp -----------CC-SSS-SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred -----------hh-ccC-chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 00 001 1112222222 22224578999999985310 001 1122222221 22
Q ss_pred CCcEEEEecCChhhhh-hc-C---CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCc
Q 047556 318 PNSKIVVTTRHSHVAS-TM-E---PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGL 385 (1175)
Q Consensus 318 ~gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1175)
.+..||.||...+... .+ . -+..+.+..-+.++-.++|..+..... ...+..+ ..|++.+.|.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCH----HHHHHHCCSC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCC
Confidence 3556777776655433 11 1 234577887777777788876653221 1122223 3466777664
No 234
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.68 E-value=0.047 Score=61.35 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=15.3
Q ss_pred CCCcCeEEeecCCCCCcC-CCCCCCcCccceEEee
Q 047556 905 SVTLKRLGIRRCPELTSL-SPGIRLPEALEQLYIW 938 (1175)
Q Consensus 905 ~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~ 938 (1175)
+++|+.+.+.++. ++.+ ...+..+.+|+.+.|.
T Consensus 285 c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 285 CSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccc-cceehhhhhcCCCCCCEEEcC
Confidence 4455555554432 2222 2334445556665553
No 235
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.52 E-value=0.017 Score=66.52 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=36.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 183 TVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.++|++..++.+...+... .-|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 4789999998888877653 368899999999999999999854
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.48 E-value=0.001 Score=72.08 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 188 HQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 188 ~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
...++.+.+++..... .....+.|+|++|+|||+||+++++...
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444555566654321 1136788999999999999999998643
No 237
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.46 E-value=0.013 Score=59.99 Aligned_cols=84 Identities=25% Similarity=0.220 Sum_probs=51.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCC-----------C-CCccchH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYS-----------S-CDLKALN 276 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~-----------~-~~~~~~~ 276 (1175)
-.++.|+|.+|+||||||..++. . .-..++|++.....+...+.+ +.+.++.. . .......
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 36999999999999999999987 1 234678888776555554432 33333221 1 1111222
Q ss_pred HHHHHHHHHhcCccEEEEEecCc
Q 047556 277 EVQVQLKKAVDGKKIFLVLDDVW 299 (1175)
Q Consensus 277 ~~~~~l~~~l~~~r~LlVlDdv~ 299 (1175)
+....++..+..+.-++|+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 33344444544457799999874
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.38 E-value=0.01 Score=69.78 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++|-+.....+.+.+.-..-.......++.++|++|+||||||+.++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578887777766554321100000234689999999999999999998753
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.37 E-value=0.0049 Score=76.57 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=70.5
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.+++... ...+.++++.......
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~------~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT------CEEEEEEGGGCSSSSC---
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc------CCEEEEechhhcchhh---
Confidence 478999888888776653211 0002345789999999999999999987431 1234444443221100
Q ss_pred HHHHHhcCCCCCccc---hHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCC-----------CCcEEEEe
Q 047556 260 AILESITYSSCDLKA---LNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAA-----------PNSKIVVT 325 (1175)
Q Consensus 260 ~il~~l~~~~~~~~~---~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 325 (1175)
+.+.++.+. .-.. ...+...++ +....+|+||++.....+....+...+..+. ....||.|
T Consensus 530 -~~~l~g~~~-g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 -VSRLIGAPP-GYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp -CSSSCCCCS-CSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred -HhhhcCCCC-CCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 000111111 1000 111122222 2446899999997665555555554443210 23557777
Q ss_pred cCC
Q 047556 326 TRH 328 (1175)
Q Consensus 326 tr~ 328 (1175)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 754
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.29 E-value=0.0019 Score=68.46 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=44.3
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEe--CCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHh
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCV--SEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
.+++.|+|++|+|||+||.+++.. .+ ..++|+++ ....+. - . .+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G---~~VlyIs~~~eE~v~~-------------~--~-~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LG---GKDKYATVRFGEPLSG-------------Y--N-TDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HH---TTSCCEEEEBSCSSTT-------------C--B-CCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CC---CCEEEEEecchhhhhh-------------h--h-cCHHHHHHHHHHHH
Confidence 367889999999999999999874 11 13456666 222110 0 0 33455555566666
Q ss_pred cCccEEEEEecCc
Q 047556 287 DGKKIFLVLDDVW 299 (1175)
Q Consensus 287 ~~~r~LlVlDdv~ 299 (1175)
.+.+ +||+|++.
T Consensus 181 ~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 181 LQHR-VIVIDSLK 192 (331)
T ss_dssp HHCS-EEEEECCT
T ss_pred hhCC-EEEEeccc
Confidence 5556 99999994
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.20 E-value=0.01 Score=74.51 Aligned_cols=136 Identities=13% Similarity=0.175 Sum_probs=71.6
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHH
Q 047556 183 TVFGRHQDKAKILEMVSANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISR 259 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (1175)
.++|.+..++.+...+..... ........+.|+|++|+|||++|+.+++..... -...+.++++...... ...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i~i~~~~~~~~~-~~s 634 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKH-AVS 634 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEECTTTCCSSG-GGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhccchh-HHH
Confidence 479999988888887754311 000234588999999999999999998753211 1123445444322110 000
Q ss_pred HHHHHhcCCCC--CccchHHHHHHHHHHhcCccEEEEEecCccCCcccHHHHhcccCCCC-----------CCcEEEEec
Q 047556 260 AILESITYSSC--DLKALNEVQVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAA-----------PNSKIVVTT 326 (1175)
Q Consensus 260 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 326 (1175)
.+ ++.+.. .......+...++. ...-+|+||++..-..+....+...+..+. .+..||+||
T Consensus 635 ~l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 635 RL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GC-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HH---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 00 010000 00000112222222 334699999997666555666655554321 245577777
Q ss_pred CC
Q 047556 327 RH 328 (1175)
Q Consensus 327 r~ 328 (1175)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 242
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.15 E-value=0.033 Score=59.80 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++.+.++|++|+|||+||+++++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678899999999999999999864
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.10 E-value=0.06 Score=65.31 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSA----NS---PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
.++.|-++.+++|.+.+.- ++ .-+...++-|.++|++|+|||+||++++++... + .+.|+.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~---~---~~~v~~~----- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---F---FFLINGP----- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC---E---EEEEEHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---e---EEEEEhH-----
Confidence 3578888888888776532 11 111134577899999999999999999986432 2 2334322
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC------c-ccH----HHHhcccCC--CCCCcE
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED------Y-GLW----EDLKAPLMG--AAPNSK 321 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------~-~~~----~~l~~~l~~--~~~gs~ 321 (1175)
++.. . ........+...+....+..+.+|++|+++.-- . +.- ..+...+.. ...+..
T Consensus 273 -----~l~s---k--~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 -----EIMS---K--LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----HHHS---S--CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -----Hhhc---c--cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1111 0 111122223333344445779999999995421 0 111 122222211 123445
Q ss_pred EEEecCChhhh-hhcC----CCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch
Q 047556 322 IVVTTRHSHVA-STME----PIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 322 iivTtr~~~v~-~~~~----~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1175)
||.||...+.. ..+. -...+++...+.++-.++|..+...... ..+..+ ..|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCH----HHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhcCCCC
Confidence 66666654332 2221 2356888888888888888766532111 112222 45777777754
No 244
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.01 E-value=0.0043 Score=62.92 Aligned_cols=114 Identities=14% Similarity=-0.032 Sum_probs=64.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCC--ccchHHHHHHHHHHh
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCD--LKALNEVQVQLKKAV 286 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l 286 (1175)
-.++.|+|..|+||||++..+.......+ . .++.+....... ....+++.++..... ....++....+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g--~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD--V-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--C-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC--C-EEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 37899999999999999988887654322 2 333343332211 222344445433221 223344455555544
Q ss_pred cCc-cEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhh
Q 047556 287 DGK-KIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHV 331 (1175)
Q Consensus 287 ~~~-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 331 (1175)
.+. .-+||+|.+..-+.+..+.+.. +.+ .|..||+|.++.+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKNF 128 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBCT
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccccc
Confidence 444 4499999996533334343332 322 27889999986543
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.96 E-value=0.036 Score=62.14 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+.++|++|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999753
No 246
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.89 E-value=0.018 Score=62.98 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=55.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQL 282 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 282 (1175)
.-.++.|+|++|+||||||.+++...... -..++|++....++.. .+++++.... ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 34899999999999999999998754322 2357888877766654 4555554421 123344544555
Q ss_pred HHHhc-CccEEEEEecCc
Q 047556 283 KKAVD-GKKIFLVLDDVW 299 (1175)
Q Consensus 283 ~~~l~-~~r~LlVlDdv~ 299 (1175)
...++ .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 54443 455689999873
No 247
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.73 E-value=0.0097 Score=58.29 Aligned_cols=118 Identities=18% Similarity=0.094 Sum_probs=62.1
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC---CCCHHHHHHHHHH---HhcCC-CCCcc-------ch
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE---DFDVLSISRAILE---SITYS-SCDLK-------AL 275 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~il~---~l~~~-~~~~~-------~~ 275 (1175)
..|.|++..|.||||.|-...-..-.. .+ .+.++.+-. ......++..+.- +.+.. ..... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--GK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--TC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--CC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 356666777799999997766532221 22 344454433 2333344433310 00000 00111 11
Q ss_pred HHHHHHHHHHhcC-ccEEEEEecCcc---CCcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 276 NEVQVQLKKAVDG-KKIFLVLDDVWN---EDYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 276 ~~~~~~l~~~l~~-~r~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
.......++.+.+ +-=|||||++-. -..-..+++...+........||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 1222344555544 445999999821 123445666666666667889999999863
No 248
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.72 E-value=0.034 Score=54.46 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988654
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.71 E-value=0.029 Score=59.27 Aligned_cols=83 Identities=10% Similarity=0.111 Sum_probs=54.6
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----ccchHHH-HHHHHH
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCD-----LKALNEV-QVQLKK 284 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~-~~~l~~ 284 (1175)
++-|.|++|+||||||.+++......+ .-..++||+....++.. .+++++...+. ..+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 789999999999999988876543211 12467999988887764 36777765431 2234444 222222
Q ss_pred H--h-cCccEEEEEecCc
Q 047556 285 A--V-DGKKIFLVLDDVW 299 (1175)
Q Consensus 285 ~--l-~~~r~LlVlDdv~ 299 (1175)
. + +++.-++|+|-+.
T Consensus 104 l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHTCCTTCCEEEEEECST
T ss_pred HHHhhccCceEEEEeccc
Confidence 2 2 4578899999984
No 250
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.63 E-value=0.058 Score=59.28 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=41.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 267 (1175)
..-.++.|+|.+|+||||||..++....... ..-..++|++....++...+. +++..++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 3448999999999999999999886532210 012468899988877766554 34455543
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.60 E-value=0.033 Score=60.75 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=40.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 267 (1175)
-.++.|+|.+|+||||||..++....... ..-..++|++....++...+. ++++.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 37999999999999999999886532210 002468999988877766554 34555544
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.54 E-value=0.021 Score=59.20 Aligned_cols=114 Identities=20% Similarity=0.104 Sum_probs=60.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-------------------
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC------------------- 270 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~------------------- 270 (1175)
.+++|+|++|+|||||++.++...... -..++|+.... ....+...+ ..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 689999999999999999998643221 22456666543 333333332 23332211
Q ss_pred ----CccchHHHHHHHHHHhc-Cc--cEEEEEecCccC---CcccHHHHhcccCC--CCCCcEEEEecCCh
Q 047556 271 ----DLKALNEVQVQLKKAVD-GK--KIFLVLDDVWNE---DYGLWEDLKAPLMG--AAPNSKIVVTTRHS 329 (1175)
Q Consensus 271 ----~~~~~~~~~~~l~~~l~-~~--r~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 329 (1175)
...+.++....+.+.+. .+ +.++|+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01133444444444432 13 349999998521 22233333333322 12477888888765
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.53 E-value=0.036 Score=57.78 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=51.8
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccc---cccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC---------CccchH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVET---FKFDIKAWVCVSEDFDVLSISRAILESITYSSC---------DLKALN 276 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---------~~~~~~ 276 (1175)
-.++.|+|++|+|||||+..++....... ..-..++|++....+....+ .++++.++.... ...+.+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 37999999999999999999886421110 01246788887765555443 334445543210 011112
Q ss_pred H---HHHHHHHHhc-CccEEEEEecCc
Q 047556 277 E---VQVQLKKAVD-GKKIFLVLDDVW 299 (1175)
Q Consensus 277 ~---~~~~l~~~l~-~~r~LlVlDdv~ 299 (1175)
+ ....+.+.+. .+.-+||+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 2223444443 467788888873
No 254
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.50 E-value=0.041 Score=60.15 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=54.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccc---------ccc----ceEEEEEeCCCCCHHHHHHHHHHHhcCCCC----
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVET---------FKF----DIKAWVCVSEDFDVLSISRAILESITYSSC---- 270 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---- 270 (1175)
.-.++.|+|.+|+|||+||..++....... ..- ..++|++....++...+. ++++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence 347999999999999999998876421100 011 578999988887776655 34455544321
Q ss_pred -----CccchH---HHHHHHHHHhc--CccEEEEEecC
Q 047556 271 -----DLKALN---EVQVQLKKAVD--GKKIFLVLDDV 298 (1175)
Q Consensus 271 -----~~~~~~---~~~~~l~~~l~--~~r~LlVlDdv 298 (1175)
...+.+ +....+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 011122 22333444443 34568888877
No 255
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.49 E-value=0.048 Score=67.40 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=83.3
Q ss_pred CccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCH
Q 047556 182 RTVFGRHQDKAKILEMVSAN----S---PSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 254 (1175)
..++|.+..++++.+++... . .-+......|.|+|++|+||||||+.++..... .| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cE---EEEEchH----
Confidence 46899999999888877530 0 000023357899999999999999999875321 22 3333210
Q ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCccEEEEEecCccCC------cc-----cHHHHhcccCCC--CCCcE
Q 047556 255 LSISRAILESITYSSCDLKALNEVQVQLKKAVDGKKIFLVLDDVWNED------YG-----LWEDLKAPLMGA--APNSK 321 (1175)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------~~-----~~~~l~~~l~~~--~~gs~ 321 (1175)
+... ............+.......+.++++|++..-. .. ....+...+... ..+..
T Consensus 274 ----------l~~~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ----------IMSK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HSSS-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ----------hhhh-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 1000 001111122222333334567899999994311 00 111222222211 23456
Q ss_pred EEEecCChhhhh-hcC----CCCeeeCCCCChhhhHHHHHhhh
Q 047556 322 IVVTTRHSHVAS-TME----PIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 322 iivTtr~~~v~~-~~~----~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
||.||....... .+. -...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666666543221 111 12456777788888888887654
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.48 E-value=0.092 Score=55.55 Aligned_cols=126 Identities=15% Similarity=0.104 Sum_probs=66.5
Q ss_pred EEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHH-hcCcc
Q 047556 212 IPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKA-VDGKK 290 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~r 290 (1175)
+.++|++|+||||||+.++..... ..+++....-.+. ...........+.+. -...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~------~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL------NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC------EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC------CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999975322 2344432221100 000011111122221 13467
Q ss_pred EEEEEecCccCCc-----------ccHHHHhcccCCC--CCCcEEEEecCChhhhhhc-----CCCCeeeCCCCChhhhH
Q 047556 291 IFLVLDDVWNEDY-----------GLWEDLKAPLMGA--APNSKIVVTTRHSHVASTM-----EPIQQYNLRCLSDEDCW 352 (1175)
Q Consensus 291 ~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~e~~ 352 (1175)
.++++|++..... .....+...+..+ ....-++.+|..+++.... .-...+.+...+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 8999999853110 0112222223222 2234455677666554311 23456778888888888
Q ss_pred HHHHhhh
Q 047556 353 SLFMMHA 359 (1175)
Q Consensus 353 ~lf~~~~ 359 (1175)
++|....
T Consensus 185 ~il~~~~ 191 (274)
T 2x8a_A 185 AILKTIT 191 (274)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887654
No 257
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.47 E-value=0.079 Score=60.86 Aligned_cols=175 Identities=16% Similarity=0.161 Sum_probs=90.4
Q ss_pred CccccchhhHHHHHHHH---hcCCC---CCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHH
Q 047556 182 RTVFGRHQDKAKILEMV---SANSP---SGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVL 255 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (1175)
.+++|.+..+.++.+.. ..... -+..-.+-+.|+|++|+||||||++++..... . .+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---P---FITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---C---EEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C---EEEEehhHHHH--
Confidence 46889887776666543 22100 00011223899999999999999999975321 1 23343321100
Q ss_pred HHHHHHHHHhcCCCCCccchHHHHHHHHHHhc----CccEEEEEecCccCC----------cccH----HHHhcccCCC-
Q 047556 256 SISRAILESITYSSCDLKALNEVQVQLKKAVD----GKKIFLVLDDVWNED----------YGLW----EDLKAPLMGA- 316 (1175)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~----~~r~LlVlDdv~~~~----------~~~~----~~l~~~l~~~- 316 (1175)
. ........++..++ ..+.++++|+++.-. .+.+ ..+...+..+
T Consensus 103 ------------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0 00111122333332 245799999995311 1122 2233333322
Q ss_pred -CCCcEEEEecCChhhhh-hc----CCCCeeeCCCCChhhhHHHHHhhhccCCCCCcchhHHHHHHHHHHhcCCch
Q 047556 317 -APNSKIVVTTRHSHVAS-TM----EPIQQYNLRCLSDEDCWSLFMMHAFVSRDLTAQQISDLFRDKVVGKCRGLP 386 (1175)
Q Consensus 317 -~~gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1175)
..+..|+.||..+++.. .. .-...+.+...+.++-.+++..++... ....+.. ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 23445666676665432 11 123578888888888888887665321 1111111 234677777755
No 258
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.39 E-value=0.16 Score=55.94 Aligned_cols=158 Identities=11% Similarity=-0.038 Sum_probs=96.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcC
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1175)
.++..++|..|.||++.|+.+.+..... .|+....+.+....++.++...+- ..-+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~--------------------~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQ--GFEEHHTFSIDPNTDWNAIFSLCQ--------------------AMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHH--TCCEEEEEECCTTCCHHHHHHHHH--------------------HHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhC--CCCeeEEEEecCCCCHHHHHHHhc--------------------CcCCcc
Confidence 3689999999999999999887743222 232211222333333333222210 112346
Q ss_pred ccEEEEEecCcc-CCcccHHHHhcccCCCCCCcEEEEecCC-------hhhhhhcC-CCCeeeCCCCChhhhHHHHHhhh
Q 047556 289 KKIFLVLDDVWN-EDYGLWEDLKAPLMGAAPNSKIVVTTRH-------SHVASTME-PIQQYNLRCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 289 ~r~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~ 359 (1175)
.+-++|+|++.. -....++.+...+....+++.+|+++.. ..+...+. ....++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999865 3446777787777655567777766532 23333322 34678899999999888877766
Q ss_pred ccCCCCCcchhHHHHHHHHHHhcCCchHHHHHH
Q 047556 360 FVSRDLTAQQISDLFRDKVVGKCRGLPLAAKAL 392 (1175)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1175)
...+- . ...+.+..+++.++|...++...
T Consensus 156 ~~~g~-~---i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNL-E---LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTC-E---ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCC-C---CCHHHHHHHHHHhchHHHHHHHH
Confidence 43221 1 12335677999999988877653
No 259
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.24 E-value=0.014 Score=63.13 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=29.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF 252 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 252 (1175)
..++|+|..|+|||||++.+.+........+.+ +++-+++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 689999999999999999987643222113333 456677654
No 260
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.04 E-value=0.022 Score=57.32 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=34.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 186 GRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 186 gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.|++.++++.+.+..... ....+|+|+|..|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356677788887765421 34589999999999999999998764
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.97 E-value=0.051 Score=59.62 Aligned_cols=85 Identities=20% Similarity=0.156 Sum_probs=54.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQL 282 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 282 (1175)
.-.++.|+|.+|+||||||.+++..... .-..++|++....++.. .++.++.... ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3479999999999999999998865432 22467899988776653 2455554321 112344444444
Q ss_pred HHHhc-CccEEEEEecCcc
Q 047556 283 KKAVD-GKKIFLVLDDVWN 300 (1175)
Q Consensus 283 ~~~l~-~~r~LlVlDdv~~ 300 (1175)
....+ .+.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 44443 3567999999843
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.95 E-value=0.044 Score=58.61 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=46.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE-DFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVD 287 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1175)
..+++++|.+|+||||++..++....... . ..+..+.... .....+.+....+..+.+.....+...+...+.. +
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK-H-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTT-C-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-C-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 47999999999999999999886543211 1 1345555432 2233333444444444332212223333333433 3
Q ss_pred CccEEEEEecC
Q 047556 288 GKKIFLVLDDV 298 (1175)
Q Consensus 288 ~~r~LlVlDdv 298 (1175)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44567888944
No 263
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.91 E-value=0.027 Score=51.74 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=37.4
Q ss_pred cEEEecccccc--cCCCCccCCcccccEEEeccccccccccc-ccCcccccEEeccCcc
Q 047556 604 RVLSLSRSYIT--ELPKGSMSGWKHLRYLNLSHTWIRNLPKS-TCSLINLQILLLRGCY 659 (1175)
Q Consensus 604 r~L~Ls~~~i~--~l~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 659 (1175)
.+++.+++.++ .+| ..+. .+|++|+|++|.|+.||.. |..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP-~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLP-TAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSC-SCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCC-CCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36777888877 777 3332 3678888888888888654 5667777777777773
No 264
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.83 E-value=0.052 Score=59.79 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=55.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQL 282 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 282 (1175)
...++.|.|.+|+||||||..++...... -..++|++....++.. .++.++.... ...+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 34689999999999999999887654322 2368999988776654 2445544321 123445555555
Q ss_pred HHHhc-CccEEEEEecCc
Q 047556 283 KKAVD-GKKIFLVLDDVW 299 (1175)
Q Consensus 283 ~~~l~-~~r~LlVlDdv~ 299 (1175)
....+ ...-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 55544 345689999983
No 265
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.76 E-value=0.046 Score=60.00 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=53.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQL 282 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 282 (1175)
.-+++.|.|.+|+||||||.+++...... -..++|++....++... +..++.... +..+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 34799999999999999999988754322 23688999887776442 445544321 112334444444
Q ss_pred HHHh-cCccEEEEEecCc
Q 047556 283 KKAV-DGKKIFLVLDDVW 299 (1175)
Q Consensus 283 ~~~l-~~~r~LlVlDdv~ 299 (1175)
+... ..+.-+||+|.+-
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 3333 2455689999883
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.68 E-value=0.23 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|+|+.|.|||||.+.++.-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998643
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.60 E-value=0.18 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|+|+.|+|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998643
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.53 E-value=0.097 Score=56.28 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=34.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 184 VFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 184 ~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
++|....+..+...+...... ....+|+|.|+.|+||||+|+.+..-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~--~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEP--KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC--CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCC--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455556666666666554321 56679999999999999999998753
No 269
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.42 E-value=0.0087 Score=59.12 Aligned_cols=109 Identities=13% Similarity=0.001 Sum_probs=52.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC--CccchHHHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC--DLKALNEVQVQLKKAVD 287 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~ 287 (1175)
.++.|+|+.|+||||++..++.+....+ .. ++++..... .......+...++.... ...+.+ .+.+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~-v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~ 74 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--KK-VAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIE 74 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--CE-EEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--Ce-EEEEeeccc--cccCcccEEecCCCceeeEEECCHH----HHHHHhc
Confidence 5889999999999999977665443222 22 233322211 00000001111111100 001111 2223334
Q ss_pred CccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 288 GKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 288 ~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
++.-+|++|.+..-+.+ |.+....+.+. |..|++|.++..
T Consensus 75 ~~~dvviIDE~Q~~~~~-~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPS-LFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGGSCTT-HHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CCCCEEEEECcccCCHH-HHHHHHHHHHC--CCCEEEEeeccc
Confidence 45679999999654333 44444333332 778999887543
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.11 E-value=0.11 Score=53.78 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998753
No 271
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.01 E-value=0.19 Score=55.13 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=51.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcccccccccc----ceEEEEEeCCCCCHHHHHHHHHHHhcCCCC------------C
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKF----DIKAWVCVSEDFDVLSISRAILESITYSSC------------D 271 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~il~~l~~~~~------------~ 271 (1175)
.-.++.|+|+.|+|||||+..++....... .. ..++|++....+....+ ..+++..+.... .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~-~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPP-EEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccch-hcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 448999999999999999999886532111 11 24588887665543332 334444332210 0
Q ss_pred ccchHHHHHHHHHHhc------CccEEEEEecCc
Q 047556 272 LKALNEVQVQLKKAVD------GKKIFLVLDDVW 299 (1175)
Q Consensus 272 ~~~~~~~~~~l~~~l~------~~r~LlVlDdv~ 299 (1175)
.....+....+...+. .+.-+||+|.+-
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 0111222333444443 467789999873
No 272
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.01 E-value=0.15 Score=54.13 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999887644
No 273
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.92 E-value=0.039 Score=55.79 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 190 DKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 190 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
-+++|.+.+.... ....+|+|+|+.|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~~----~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQ----PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTC----CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555554321 34589999999999999999998864
No 274
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.78 E-value=0.1 Score=56.13 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=27.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVS 249 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 249 (1175)
.+++|+|.+|+|||||++.++....... -..++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCc
Confidence 6899999999999999999887543211 1145566543
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.61 E-value=0.28 Score=50.26 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=31.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccc---cccccceEEEEEeCCCCCH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEV---ETFKFDIKAWVCVSEDFDV 254 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~ 254 (1175)
.-.+++|+|+.|+|||||++.++..... .......++|+.-......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 3479999999999999999999753211 0101335778776554333
No 276
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.61 E-value=0.05 Score=49.95 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=37.3
Q ss_pred cc--ccchhhhhccCCCcccceeecCCcCCcccCcCCCCCCCCCCceeccCCC
Q 047556 1063 AE--CFPDEEMRMMLPTSLCFLNIIGFRNLKKLSSKGFQSLTSLEFLWIDDCP 1113 (1175)
Q Consensus 1063 ~~--~~~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1113 (1175)
+. .+|. .+|++|+.|+|++ |+|+.++...|..+++|+.|+|+++|
T Consensus 20 L~~~~vP~-----~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 20 LTWASLPT-----AFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCTTTSCS-----CCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CccccCCC-----CCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 55 6775 4678899999998 78999988888889999999998865
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.60 E-value=0.22 Score=53.94 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=36.6
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILES 264 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~ 264 (1175)
-.++.|.|.+|+||||+|..++.....+ . ..++|++.. .+...+...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~--g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN--D-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT--T-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--C-CeEEEEECC--CCHHHHHHHHHHH
Confidence 3789999999999999999988654322 1 467777765 4556666666554
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.51 E-value=0.032 Score=54.79 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.50 E-value=0.064 Score=57.20 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 190 DKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 190 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++++..+....... ....+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~~~-~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAV-ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCCCC-SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCC-CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444332222 45689999999999999999999863
No 280
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.48 E-value=0.17 Score=56.42 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=37.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcccccc---ccccceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVE---TFKFDIKAWVCVSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 267 (1175)
.-.++.|+|.+|+|||||+..++-..... +..-..++|++....+....+ +.+++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 33799999999999999999765221110 001245788887766655543 335666554
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.38 E-value=0.29 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998887644
No 282
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.34 E-value=0.15 Score=54.57 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=47.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCCCC---CccchHH-HHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYSSC---DLKALNE-VQVQL 282 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~---~~~~~~~-~~~~l 282 (1175)
...++.|+|.+|+||||++..++...... -..+.++...... ...+-+...++..+.+.. ...+... ....+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45899999999999999999988754322 1234555543221 112223344444443211 1112222 12344
Q ss_pred HHHhcCccEEEEEecC
Q 047556 283 KKAVDGKKIFLVLDDV 298 (1175)
Q Consensus 283 ~~~l~~~r~LlVlDdv 298 (1175)
...+....-++|+|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 4445455558888876
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.33 E-value=0.036 Score=54.08 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.32 E-value=0.036 Score=54.30 Aligned_cols=20 Identities=45% Similarity=0.669 Sum_probs=18.9
Q ss_pred EEEEEEccCCChHHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREV 229 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v 229 (1175)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 285
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.31 E-value=0.047 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 378999999999999999999874
No 286
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.30 E-value=0.36 Score=50.36 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.21 E-value=0.029 Score=55.01 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
|.|.|+|+.|+|||||++++..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999864
No 288
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.11 E-value=0.042 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|.|+|+.|+||||+|+.+...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 289
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.05 E-value=0.15 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.+..-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 68999999999999999998763
No 290
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.03 E-value=0.24 Score=55.66 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=51.2
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCccchHH---
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFD-VLSISRAILESIT--------YSSCDLKALNE--- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~--- 277 (1175)
+.++|+|..|+|||||+..+..+.... ..+..+++-+++..+ ..++++++.+.-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 468999999999999999988754322 234556777776653 4455554543210 01111111111
Q ss_pred -HHHHHHHHh---cCccEEEEEecCc
Q 047556 278 -VQVQLKKAV---DGKKIFLVLDDVW 299 (1175)
Q Consensus 278 -~~~~l~~~l---~~~r~LlVlDdv~ 299 (1175)
..-.+.+++ +++++|+++||+.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111233333 5889999999993
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.02 E-value=0.048 Score=53.68 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 292
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.97 E-value=0.069 Score=59.49 Aligned_cols=51 Identities=25% Similarity=0.237 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhcC-------C--CCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 183 TVFGRHQDKAKILEMVSAN-------S--PSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 183 ~~vgr~~~~~~l~~~l~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.++|.+..++.+...+... . .......+.+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4689888888888777210 0 0000133568999999999999999999753
No 293
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.96 E-value=0.25 Score=53.47 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=36.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHh
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESI 265 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l 265 (1175)
.++.|.|.+|+||||+|..++...... -..++|++.. .+...+...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 689999999999999999988754332 2356666653 45666666665543
No 294
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.91 E-value=0.077 Score=55.53 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 190 DKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 190 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+.+...+....... ....+|.|+|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSS-KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHTTCCCC-SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcc-cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3344444444333222 45689999999999999999999874
No 295
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.77 E-value=0.26 Score=55.50 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=55.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCC-------C-------CCccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYS-------S-------CDLKA 274 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~-------~~~~~ 274 (1175)
.-++|+|..|+|||+|++++.+.... . +-+.++++-+++.. ...++++++.+.=... . .+...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~-~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAK-A-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTT-T-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHh-h-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 56899999999999999999875322 2 44678888888765 4566777776542221 0 01111
Q ss_pred h-----HHHHHHHHHHhc---CccEEEEEecC
Q 047556 275 L-----NEVQVQLKKAVD---GKKIFLVLDDV 298 (1175)
Q Consensus 275 ~-----~~~~~~l~~~l~---~~r~LlVlDdv 298 (1175)
. ....-.+.++++ ++.+|+++||+
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1 111223445554 58999999998
No 296
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.74 E-value=0.032 Score=60.30 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC
Q 047556 193 KILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED 251 (1175)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 251 (1175)
++++.+..- .+-.-++|+|.+|+|||+|++++.+........+.+ +++-+++.
T Consensus 164 raID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 555666543 223678999999999999999988754322112333 45666654
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.74 E-value=0.055 Score=53.20 Aligned_cols=23 Identities=13% Similarity=0.478 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999864
No 298
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.67 E-value=0.051 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+.|.|+|++|+||||+|+.+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.61 E-value=0.063 Score=53.86 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+|+|+|+.|.||||+|+.+....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999998754
No 300
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.55 E-value=0.21 Score=56.08 Aligned_cols=88 Identities=17% Similarity=0.064 Sum_probs=46.8
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCC---CccchHHHH-HHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSSC---DLKALNEVQ-VQLK 283 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~---~~~~~~~~~-~~l~ 283 (1175)
.++|.++|.+|+||||++..++......+ ..++.+.+... ....+.+....+..+.+.. ...+..... ..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 48999999999999999998886544322 23444444321 2233334444444444321 112222222 2333
Q ss_pred HHhcCccEEEEEecCc
Q 047556 284 KAVDGKKIFLVLDDVW 299 (1175)
Q Consensus 284 ~~l~~~r~LlVlDdv~ 299 (1175)
.......-++|+|-..
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 3333344566788764
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.52 E-value=0.046 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.52 E-value=0.065 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999864
No 303
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.41 E-value=0.12 Score=55.87 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=32.5
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 185 FGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 185 vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
|+-+.-.+++++.+...-.. +....+.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34455566666666433221 345678999999999999999988743
No 304
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.32 E-value=0.19 Score=52.19 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=28.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE 250 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 250 (1175)
.++.|.|.+|+||||||..++..... .-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 68999999999999999887654322 123567777554
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.30 E-value=0.066 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998754
No 306
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.30 E-value=0.068 Score=55.92 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999874
No 307
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.27 E-value=0.57 Score=52.52 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=54.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHHHHHhcCC------C-------CCccch
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAILESITYS------S-------CDLKAL 275 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~------~-------~~~~~~ 275 (1175)
.-++|+|..|+|||+|++++.+.... . +-+.++++-+++.. ...++.+++.+.=... . .+....
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~-~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~ 231 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAK-A-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPG 231 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTT-T-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHh-h-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHH
Confidence 67899999999999999999875321 1 34567788888665 4566777776542221 0 011111
Q ss_pred HH-----HHHHHHHHh---cCccEEEEEecC
Q 047556 276 NE-----VQVQLKKAV---DGKKIFLVLDDV 298 (1175)
Q Consensus 276 ~~-----~~~~l~~~l---~~~r~LlVlDdv 298 (1175)
.. ..-.+.+++ +++.+||++||+
T Consensus 232 ~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 232 ARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11 112233444 478999999998
No 308
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.21 E-value=0.069 Score=53.95 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+++|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3789999999999999999998753
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.18 E-value=0.07 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+++|+|+.|+||||+++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999863
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.15 E-value=0.079 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+++|+|+.|+||||+|+.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999999763
No 311
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.10 E-value=0.072 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.09 E-value=0.053 Score=54.54 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 313
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.03 E-value=0.62 Score=56.53 Aligned_cols=53 Identities=25% Similarity=0.275 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSP-------SGHANIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
..+.|.++.++++.+.+.-.-. .+....+-|.++|++|.|||.+|+++++...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 3567888888877776543211 1112345578999999999999999998643
No 314
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.02 E-value=0.064 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.++|.|+|++|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 315
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.01 E-value=0.11 Score=51.17 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
+..+..++... +.-..+.|+|++|+||||+|.++++..
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44455555432 233468999999999999999988753
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.96 E-value=0.09 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4479999999999999999999873
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.95 E-value=0.064 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++++|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34789999999999999999998743
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.91 E-value=0.073 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.90 E-value=0.071 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998743
No 320
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.90 E-value=0.077 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+++.|.|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999874
No 321
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.85 E-value=0.082 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.715 Sum_probs=20.1
Q ss_pred cEEEEEEccCCChHHHHHHHHhc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 37999999999999999997553
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.84 E-value=0.086 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999975
No 323
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.83 E-value=0.084 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 68999999999999999998763
No 324
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.81 E-value=0.083 Score=53.25 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+.+||.|.|++|+||+|.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999874
No 325
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.81 E-value=0.34 Score=54.67 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=28.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeC
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVS 249 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 249 (1175)
..++|.++|.+|+||||+|..++.....+. -..+.-|++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 458999999999999999988886544320 1234555554
No 326
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.80 E-value=0.32 Score=51.85 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=45.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCC-HHHHHHHHHHHhcCCCC---CccchHHHHH-HHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFD-VLSISRAILESITYSSC---DLKALNEVQV-QLKK 284 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~~~~~---~~~~~~~~~~-~l~~ 284 (1175)
.+++|+|.+|+||||++..++.-.... -..+.++....... ....+....+..+...- ...+..++.+ .+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999988754322 12345555433221 11223334444443221 1122333332 3333
Q ss_pred HhcCccEEEEEecC
Q 047556 285 AVDGKKIFLVLDDV 298 (1175)
Q Consensus 285 ~l~~~r~LlVlDdv 298 (1175)
......=++|+|-.
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 32244557888876
No 327
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.75 E-value=0.089 Score=56.69 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=28.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSE 250 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 250 (1175)
++.+||+|.|-|||||||.|..+..-....+ ..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G---kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC---CeEEEEecCC
Confidence 4559999999999999999877665433222 2356666654
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.73 E-value=0.096 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999864
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.71 E-value=0.83 Score=52.38 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=21.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
...++|+|+|.+|+||||++..++...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999988643
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.71 E-value=0.086 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|.|++|+||||+|+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998763
No 331
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.67 E-value=0.12 Score=53.53 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...+|+|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999863
No 332
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.67 E-value=0.14 Score=52.55 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 188 HQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 188 ~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
++..+.+...+.. ....+|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344555555543 34588999999999999999998865
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.66 E-value=0.085 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|.|++|+||||+|+.+.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999863
No 334
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.62 E-value=0.096 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45579999999999999999999874
No 335
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.61 E-value=0.076 Score=58.88 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=33.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++|.+..++.+........ ..-+.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHhC
Confidence 458999886665544443221 1238899999999999999998753
No 336
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.59 E-value=0.098 Score=52.97 Aligned_cols=25 Identities=40% Similarity=0.389 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...+++|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999763
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.58 E-value=0.092 Score=55.18 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.7
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 338
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.58 E-value=0.3 Score=56.17 Aligned_cols=123 Identities=14% Similarity=0.109 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 047556 188 HQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITY 267 (1175)
Q Consensus 188 ~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 267 (1175)
...+..+...+.... +.+.|.|.+|+||||++.++.......+ ...++.+..+. ...+.+.+.++.
T Consensus 31 ~~av~~~~~~i~~~~-------~~~li~G~aGTGKT~ll~~~~~~l~~~~--~~~il~~a~T~-----~Aa~~l~~~~~~ 96 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-------HHVTINGPAGTGATTLTKFIIEALISTG--ETGIILAAPTH-----AAKKILSKLSGK 96 (459)
T ss_dssp HHHHHHHHHHHHSSS-------CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSH-----HHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCC-------CEEEEEeCCCCCHHHHHHHHHHHHHhcC--CceEEEecCcH-----HHHHHHHhhhcc
Confidence 344455555555421 3899999999999999999887543322 22333332221 112222222222
Q ss_pred CCCCccchHHHHHH----------H--H-HHhcCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 268 SSCDLKALNEVQVQ----------L--K-KAVDGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 268 ~~~~~~~~~~~~~~----------l--~-~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
. ..+....... + . .....+.-++|+|++...+...+..+...++ .+.+|++..-..+
T Consensus 97 ~---~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 97 E---ASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp C---EEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred c---hhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 1 1111111000 0 0 0001133488999997655566666666554 4667777765544
No 339
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.58 E-value=0.33 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
.++.++|.+|+||||++..++....
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999887543
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.56 E-value=0.073 Score=52.66 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998643
No 341
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.54 E-value=0.07 Score=52.16 Aligned_cols=23 Identities=43% Similarity=0.627 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+.|.|.|++|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 342
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.52 E-value=0.091 Score=53.00 Aligned_cols=24 Identities=29% Similarity=0.661 Sum_probs=21.6
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999998643
No 343
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.47 E-value=0.087 Score=53.01 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 344
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.42 E-value=0.11 Score=51.46 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
...+|.|+|++|+||||+|+.+.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999987543
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.39 E-value=0.1 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..|++.|++|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999863
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.36 E-value=0.095 Score=51.75 Aligned_cols=25 Identities=12% Similarity=0.498 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3478999999999999999999864
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.35 E-value=0.095 Score=50.24 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=22.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
..++++|+|..|+|||||+..+....+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 457999999999999999999987543
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.33 E-value=0.1 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.32 E-value=0.071 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|.|+|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 350
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.27 E-value=0.094 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 351
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.14 E-value=0.051 Score=59.64 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=59.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHhcCc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLKKAVDGK 289 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 289 (1175)
.+++|+|+.|.||||+.+.+....... .-..++.+.-...+..... ..++.+.. ...........+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~-~~~v~q~~----~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESK-KCLVNQRE----VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEE----BTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhcc-ccceeeee----eccccCCHHHHHHHHhhhC
Confidence 599999999999999999987643211 0012222211111100000 00000000 0011122344788888899
Q ss_pred cEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhh
Q 047556 290 KIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVA 332 (1175)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 332 (1175)
+=+|++|.+.+ .+.++.+.... ..|..||+|+.....+
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999999953 34444443332 2366788888876654
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.11 E-value=0.11 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...+|.|+|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999874
No 353
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.10 E-value=0.31 Score=51.95 Aligned_cols=87 Identities=18% Similarity=0.058 Sum_probs=47.6
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCC-CCHHHHHHHHHHHhcCCCC---CccchHHHHHHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSED-FDVLSISRAILESITYSSC---DLKALNEVQVQLKK 284 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~ 284 (1175)
..+++++|.+|+||||++..++...... -..+.++..... ......++...+..+.+.. ...+.........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 4789999999999999999888654322 224556665432 2233334444444443211 11223333333333
Q ss_pred Hhc-CccEEEEEecC
Q 047556 285 AVD-GKKIFLVLDDV 298 (1175)
Q Consensus 285 ~l~-~~r~LlVlDdv 298 (1175)
.++ +..=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 333 33347888876
No 354
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.09 E-value=0.11 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+|+|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998754
No 355
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.05 E-value=0.13 Score=50.48 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=50.9
Q ss_pred HHHhhhcCCCccEEEeccc-cccc-----CCCCccCCcccccEEEecccccc-----cccccccCcccccEEeccCcccc
Q 047556 593 FSNLLSKCRKLRVLSLSRS-YITE-----LPKGSMSGWKHLRYLNLSHTWIR-----NLPKSTCSLINLQILLLRGCYYL 661 (1175)
Q Consensus 593 ~~~~~~~~~~Lr~L~Ls~~-~i~~-----l~~~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l 661 (1175)
+...+.+-+.|+.|+|+++ .|.. +- ..+..-..|+.|+|++|.|. .|-+.+..-+.|++|+|++| .+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~I 110 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FL 110 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cC
Confidence 4445556677888888764 5542 11 33444566777777777765 33444555667777777777 33
Q ss_pred c-----cCchhhhccCCCceeeecCc
Q 047556 662 L-----KLPSKMRKLINLRHLDITGA 682 (1175)
Q Consensus 662 ~-----~lp~~i~~L~~L~~L~l~~~ 682 (1175)
+ .+-+.+..-+.|++|+|+++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCC
Confidence 2 12223334455777777644
No 356
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.04 E-value=0.084 Score=51.42 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
++|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 357
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.04 E-value=0.088 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999998763
No 358
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.04 E-value=0.57 Score=50.59 Aligned_cols=27 Identities=37% Similarity=0.364 Sum_probs=23.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
...+++|+|+.|+||||+++.++.-.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 448999999999999999999886543
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.01 E-value=0.1 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 360
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.99 E-value=0.43 Score=51.49 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=27.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeC
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVS 249 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 249 (1175)
..++++|+|.+|+||||++..++...... -..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 34899999999999999999888654322 1234555543
No 361
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.99 E-value=0.15 Score=52.05 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=30.4
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 186 GRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 186 gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+.++..+.+.+.+.. ...++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555556655543 34589999999999999999998865
No 362
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.89 E-value=0.11 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999863
No 363
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.89 E-value=0.12 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.-.+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999863
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.87 E-value=0.12 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.7
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+|+|.|++|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999863
No 365
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.82 E-value=0.29 Score=54.50 Aligned_cols=89 Identities=12% Similarity=0.220 Sum_probs=52.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccc-cccceEEEEEeCCCC-CHHHHHHHHHHH--hcCC-----CCCccchHH---
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVET-FKFDIKAWVCVSEDF-DVLSISRAILES--ITYS-----SCDLKALNE--- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~-~~~~~~~~il~~--l~~~-----~~~~~~~~~--- 277 (1175)
.-++|.|..|+|||+|+.++++.....+ +.--.++++-+++.. ...++.+++.+. +... ..+......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 4578999999999999999988654311 011156777777554 455666665543 1110 011111111
Q ss_pred --HHHHHHHHhc---CccEEEEEecC
Q 047556 278 --VQVQLKKAVD---GKKIFLVLDDV 298 (1175)
Q Consensus 278 --~~~~l~~~l~---~~r~LlVlDdv 298 (1175)
..-.+.++++ ++.+|+++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1123455553 78999999998
No 366
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.76 E-value=0.12 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 367
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.72 E-value=0.13 Score=55.26 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
....+|+|+|+.|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 344799999999999999999987643
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.70 E-value=0.08 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=17.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999864
No 369
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.68 E-value=0.12 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+++|+|+.|+|||||++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999853
No 370
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.61 E-value=0.15 Score=48.45 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.++.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 79999999999999999998864
No 371
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.55 E-value=0.73 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998754
No 372
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.54 E-value=0.13 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.3
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998754
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.48 E-value=0.12 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.8
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998743
No 374
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.46 E-value=0.3 Score=64.82 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=55.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQL 282 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 282 (1175)
..+++.|+|++|+|||+||.++....... =..++|+++...++... ++.++.+.. .....++..+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 45799999999999999999998754332 23578888888777665 445553211 111233444444
Q ss_pred HHHh-cCccEEEEEecCc
Q 047556 283 KKAV-DGKKIFLVLDDVW 299 (1175)
Q Consensus 283 ~~~l-~~~r~LlVlDdv~ 299 (1175)
++.. ..+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 4443 3567799999983
No 375
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.43 E-value=0.13 Score=52.17 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.3
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.43 E-value=0.15 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+|+|.|+.|+|||||++.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999999998763
No 377
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.37 E-value=0.15 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+|+|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999874
No 378
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.23 E-value=0.14 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999998763
No 379
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.18 E-value=0.16 Score=53.84 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=21.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHh
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVY 230 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~ 230 (1175)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999997
No 380
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.15 E-value=0.14 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 381
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.10 E-value=0.12 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999998764
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.09 E-value=0.13 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...|.|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999874
No 383
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.01 E-value=0.15 Score=51.63 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
...+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34799999999999999999988643
No 384
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.97 E-value=0.21 Score=58.78 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=55.3
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCCccchHHHHHHHH-HHh--
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCDLKALNEVQVQLK-KAV-- 286 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l-- 286 (1175)
+++.|.|.+|+||||++..+.......+ ..+.+.+....-. ..+.+.++.. ..+...+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g----~~Vl~~ApT~~Aa----~~L~e~~~~~---a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG----LEVGLCAPTGKAA----RRLGEVTGRT---ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT----CCEEEEESSHHHH----HHHHHHHTSC---EEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC----CeEEEecCcHHHH----HHhHhhhccc---HHHHHHHHcCCcchhhhh
Confidence 5889999999999999999887543222 2344444322112 2222222221 111111100000 000
Q ss_pred ---cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCCh
Q 047556 287 ---DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHS 329 (1175)
Q Consensus 287 ---~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 329 (1175)
..+.-+||+|.+..-+...+..+...++ .+.++|+.--..
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~ 316 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTD 316 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTT
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEeccc
Confidence 0123489999996655556666666554 466777765433
No 385
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.92 E-value=0.076 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++|.|++|+||||+|+.+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998743
No 386
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.92 E-value=0.31 Score=54.26 Aligned_cols=89 Identities=10% Similarity=0.214 Sum_probs=52.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccc-------cccc-eEEEEEeCCCC-CHHHHHHHHHHH--hcCC-----CCCcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVET-------FKFD-IKAWVCVSEDF-DVLSISRAILES--ITYS-----SCDLK 273 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~~s~~~-~~~~~~~~il~~--l~~~-----~~~~~ 273 (1175)
.-++|.|..|+|||+|+.++++.....+ .+-+ .++++-+++.. ...++.+++.+. +... ..+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 4578999999999999999988654310 0111 56777777554 455566655442 1110 01111
Q ss_pred chHH-----HHHHHHHHhc---CccEEEEEecC
Q 047556 274 ALNE-----VQVQLKKAVD---GKKIFLVLDDV 298 (1175)
Q Consensus 274 ~~~~-----~~~~l~~~l~---~~r~LlVlDdv 298 (1175)
.... ..-.+.++++ ++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 1123455553 78999999998
No 387
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.85 E-value=0.15 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998753
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.82 E-value=0.15 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998753
No 389
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.77 E-value=0.16 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|+|+.|+||||+++.+...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999864
No 390
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.75 E-value=0.18 Score=51.03 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+|.|.|+.|+||||+|+.+....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999998743
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.70 E-value=0.14 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 392
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.69 E-value=0.81 Score=52.19 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=35.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILES 264 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~ 264 (1175)
..++.|.|.+|+||||+|..++...... .-..++|++.. .+...+...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3689999999999999999988754321 12356777665 3455666666543
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.67 E-value=0.097 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHhccc
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.61 E-value=0.16 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.61 E-value=0.35 Score=52.12 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...+|+|+|+.|+|||||++.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999998864
No 396
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.59 E-value=0.83 Score=46.89 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=45.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccc-cccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC---------------C--
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK-EVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC---------------D-- 271 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---------------~-- 271 (1175)
+.+.|.|..|.||||+.....-+. ...+..-...+.+..........+.+.+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 578999999999998765554322 1111011223333344333334444455444432210 0
Q ss_pred ---ccchHHHHHHHHHHhcCccEEEEEecCcc
Q 047556 272 ---LKALNEVQVQLKKAVDGKKIFLVLDDVWN 300 (1175)
Q Consensus 272 ---~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 300 (1175)
..+...+.+.+...+.+- -+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 012344445555444333 4789999964
No 397
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.55 E-value=0.15 Score=53.42 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.3
Q ss_pred EEEEccCCChHHHHHHHHhccc
Q 047556 212 IPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
+.|+|++|+||||||+.++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999754
No 398
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.54 E-value=0.17 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhccc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..+++|+|+.|+||||+++.++.-.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4699999999999999999988643
No 399
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.52 E-value=0.21 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999974
No 400
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.46 E-value=0.13 Score=49.71 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
++++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999887543
No 401
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.40 E-value=0.17 Score=51.40 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 402
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.39 E-value=0.2 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999975
No 403
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.36 E-value=0.32 Score=53.64 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++.+.+.... ....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554322 456899999999999999999887643
No 404
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.34 E-value=0.18 Score=54.32 Aligned_cols=23 Identities=43% Similarity=0.463 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999873
No 405
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.29 E-value=0.45 Score=47.25 Aligned_cols=111 Identities=12% Similarity=0.006 Sum_probs=55.1
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCC--ccchHHHHHHHHHHh
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCD--LKALNEVQVQLKKAV 286 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l 286 (1175)
..+..++|.-|.||||.|.....+....+ ....+ +.... +...-...++..++..... ..+.+ .+.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g--~kVli-~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAK--QHAIV-FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEE-EECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEE-EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 37899999999999999988877654432 33333 32221 1112222444544433211 11111 223333
Q ss_pred cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhh
Q 047556 287 DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHV 331 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 331 (1175)
.++--+|++|.+.--+.+..+.+. .+.+ .|..||+|.++.+.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQDF 140 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSBCT
T ss_pred hcCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEeccccc
Confidence 343449999998654444454433 2222 37799999996553
No 406
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.21 E-value=0.2 Score=59.91 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 46899998888888877653 478999999999999999998754
No 407
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.10 E-value=0.68 Score=52.19 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=50.3
Q ss_pred EEEEEEccCCChHHHHH-HHHhccccccccccc-eEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCccchHH--
Q 047556 210 AVIPIVGMGGIGKTTLA-REVYNDKEVETFKFD-IKAWVCVSEDF-DVLSISRAILESITYS-------SCDLKALNE-- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~-- 277 (1175)
.-++|+|..|+|||+|| ..+.+.. ..+ .++++-+++.. ...++.+++.+.=... ..+......
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 56899999999999996 5777643 234 34777777665 4556666665421111 011111111
Q ss_pred ---HHHHHHHHh--cCccEEEEEecC
Q 047556 278 ---VQVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 278 ---~~~~l~~~l--~~~r~LlVlDdv 298 (1175)
..-.+.+++ +++.+|+++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 112234444 578999999998
No 408
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.10 E-value=0.71 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
...++..|.|.+|.||||+.++.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 5678999999999999999999875
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.97 E-value=0.15 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 410
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.94 E-value=0.7 Score=52.06 Aligned_cols=84 Identities=23% Similarity=0.261 Sum_probs=50.3
Q ss_pred EEEEEEccCCChHHHHH-HHHhccccccccccc-eEEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCccchHHH-
Q 047556 210 AVIPIVGMGGIGKTTLA-REVYNDKEVETFKFD-IKAWVCVSEDF-DVLSISRAILESITYSS-------CDLKALNEV- 278 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~~- 278 (1175)
.-++|+|..|+|||+|| ..+.+.. ..+ .++++-+++.. ...++.+++.+.=.... .+.......
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 56799999999999996 5777642 234 34777777665 45566666654221111 111111111
Q ss_pred ----HHHHHHHh--cCccEEEEEecC
Q 047556 279 ----QVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 279 ----~~~l~~~l--~~~r~LlVlDdv 298 (1175)
.-.+.+++ .++.+|+++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 12234444 578999999998
No 411
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.91 E-value=0.21 Score=48.40 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++++|+|..|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999988753
No 412
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.90 E-value=0.22 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
++|+|+|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999873
No 413
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.84 E-value=0.18 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999887643
No 414
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.83 E-value=0.17 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 415
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.77 E-value=0.15 Score=50.19 Aligned_cols=110 Identities=14% Similarity=0.079 Sum_probs=56.4
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC--CccchHHHHHHHHHHh
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC--DLKALNEVQVQLKKAV 286 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l 286 (1175)
-++..++|..|.||||.+..+.++.... .....++-. .. +...-...+...++.... ...+.+ .+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~--g~kV~v~k~-~~--d~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVFKP-EI--DNRYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEE-C---------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEe-cc--CccchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 3799999999999999998887765433 233333321 11 111111122233322111 011111 233344
Q ss_pred cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChh
Q 047556 287 DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSH 330 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 330 (1175)
.++--+|++|.+..-+.+..+.+.. +.+ .|..||+|.++.+
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~-l~~--~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNK-IAE--SGRRVICAGLDMD 119 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEEECSBC
T ss_pred hccCCEEEEECCCCCCHHHHHHHHH-HHh--CCCEEEEEecccc
Confidence 4433499999985433334444332 222 2778999988654
No 416
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.73 E-value=0.31 Score=48.28 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998865
No 417
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.67 E-value=0.24 Score=53.05 Aligned_cols=26 Identities=42% Similarity=0.434 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
...+++|+|+.|+||||+++.++.-.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999987643
No 418
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.57 E-value=0.43 Score=48.73 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=32.5
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAIL 262 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il 262 (1175)
..|.|.|+.|+||||+++.+.+..... .+..++...-.......+.+++++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeeeecCCCCCHHHHHHHHHH
Confidence 689999999999999999998865433 355344443333222333444443
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.55 E-value=0.22 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
++|.|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 420
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.55 E-value=1.6 Score=44.82 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=48.3
Q ss_pred EEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCC-C-------C-----CccchHHH
Q 047556 212 IPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYS-S-------C-----DLKALNEV 278 (1175)
Q Consensus 212 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~-~-------~-----~~~~~~~~ 278 (1175)
+.|+|+.|.|||.+|..+.... . ..++++ +....-.....+++.+ ++.. . . .....+.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-----~-~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l 182 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-----S-TPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSA 182 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-----C-SCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-----C-CCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHH
Confidence 7789999999999998887642 1 123333 3222112222222222 3221 0 0 00112333
Q ss_pred HHHHHHHhcCccEEEEEecCccCCcccHHHHhcccC
Q 047556 279 QVQLKKAVDGKKIFLVLDDVWNEDYGLWEDLKAPLM 314 (1175)
Q Consensus 279 ~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~l~~~l~ 314 (1175)
..... .+.++--+||+|++..-....+..+...+.
T Consensus 183 ~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 183 YVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp HHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred HhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 32222 333455699999997654456666655443
No 421
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.51 E-value=0.77 Score=45.51 Aligned_cols=50 Identities=20% Similarity=0.077 Sum_probs=32.0
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHH
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILE 263 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~ 263 (1175)
.|+|-|..|+||||.++.+++..+..+ . .+++..-..........+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g--~-~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG--K-KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--C-CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--C-cEEEEECCCCCcHHHHHHHHhh
Confidence 478889999999999999988654432 2 2344444444444555555543
No 422
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.50 E-value=1.1 Score=51.25 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=34.3
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAIL 262 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il 262 (1175)
..++.|.|.+|+||||||..++....... -..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCC--CHHHHHHHHH
Confidence 36899999999999999999887643211 12577777554 3455555554
No 423
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.46 E-value=0.31 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
....++.+.|.||+||||++..+....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999988543
No 424
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.42 E-value=0.22 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999863
No 425
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.41 E-value=0.21 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+|.|.|++|+||+|.|+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 426
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.40 E-value=1.1 Score=50.84 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=35.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCC-HHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFD-VLSISRAI 261 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 261 (1175)
..++|.|..|+|||+|++++.+.. +-+.++++-+++... ..++++++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 678999999999999999987642 345788888887665 44555554
No 427
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.38 E-value=0.22 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+++|+|+.|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 7999999999999999998874
No 428
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.36 E-value=0.25 Score=55.47 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHHhcC-------CC-CCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSAN-------SP-SGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~-------~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++|.+..++.+...+... .. ......+-+.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 35788888887776665221 00 000123458899999999999999998754
No 429
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.29 E-value=0.2 Score=53.19 Aligned_cols=51 Identities=29% Similarity=0.379 Sum_probs=32.9
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 182 RTVFGRHQDKAKILEMVSANSP-------SGHANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 182 ~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
..++|.+..++++.+....-.. +- .-.+-+.|+|++|+||||||+.++...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~-~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC-CCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCC-CCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 4688888766666554321100 00 001228999999999999999999754
No 430
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.28 E-value=0.24 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 431
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.27 E-value=0.17 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=16.1
Q ss_pred EEEEEEccCCChHHHHHHHHh-c
Q 047556 210 AVIPIVGMGGIGKTTLAREVY-N 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~-~ 231 (1175)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999998 5
No 432
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.27 E-value=0.34 Score=47.62 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=66.6
Q ss_pred hhHHHhhhcCCCccEEEecccccccCCC----CccCCcccccEEEecccccc-----cccccccCcccccEEeccCccc-
Q 047556 591 LVFSNLLSKCRKLRVLSLSRSYITELPK----GSMSGWKHLRYLNLSHTWIR-----NLPKSTCSLINLQILLLRGCYY- 660 (1175)
Q Consensus 591 ~~~~~~~~~~~~Lr~L~Ls~~~i~~l~~----~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~- 660 (1175)
..+...+..-+.|+.|+|++|.|..--. ..+..-..|++|+|++|.|. .|-+.+..-..|+.|+|++|..
T Consensus 60 ~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~ 139 (197)
T 1pgv_A 60 RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS 139 (197)
T ss_dssp HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCc
Confidence 3455667788899999999998874321 23345578999999999887 4556677777899999987632
Q ss_pred -cc-----cCchhhhccCCCceeeecCcc
Q 047556 661 -LL-----KLPSKMRKLINLRHLDITGAY 683 (1175)
Q Consensus 661 -l~-----~lp~~i~~L~~L~~L~l~~~~ 683 (1175)
++ .+-+.+..-+.|..|+++.+.
T Consensus 140 ~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 140 VLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 22 233445666789999887665
No 433
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.21 E-value=0.23 Score=50.49 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+|+|.|++|+||||+|+.+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 434
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.09 E-value=0.58 Score=47.25 Aligned_cols=55 Identities=16% Similarity=0.050 Sum_probs=34.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccc-cccccceEEEEEeCCCCCHHHHHHHHHH
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEV-ETFKFDIKAWVCVSEDFDVLSISRAILE 263 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~il~ 263 (1175)
.....|.|.|+.|+||||+++.+.+.... . .+..+....-.......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~--g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIY--GVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH--CGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcc--CceeeEeeeCCCCChHHHHHHHHHh
Confidence 34578999999999999999999886543 2 3444332222222233444455544
No 435
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.09 E-value=0.46 Score=53.26 Aligned_cols=89 Identities=11% Similarity=0.188 Sum_probs=53.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcccccccc-ccceEEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCccchHH---
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETF-KFDIKAWVCVSEDF-DVLSISRAILESITYSS-------CDLKALNE--- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~--- 277 (1175)
.-++|.|..|+|||+|+.+++++...... .-+.++++-+++.. ...++.+++.+.=.... .+......
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 55788999999999999999986544210 11456777777654 45666666655311110 11111111
Q ss_pred --HHHHHHHHhc---CccEEEEEecC
Q 047556 278 --VQVQLKKAVD---GKKIFLVLDDV 298 (1175)
Q Consensus 278 --~~~~l~~~l~---~~r~LlVlDdv 298 (1175)
..-.+.++++ ++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1123445553 69999999997
No 436
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.04 E-value=0.29 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.242 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+++.|+|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3478999999999999999999873
No 437
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.01 E-value=0.5 Score=47.44 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=34.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILE 263 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~ 263 (1175)
..|.+.|..|+||||+++.+.+..... .+..+++..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL--GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 589999999999999999998865443 3433344433333334455555554
No 438
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.00 E-value=0.76 Score=61.15 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=57.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQL 282 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 282 (1175)
...++.|+|++|+||||||.+++...... -..++|++.....+... ++.++.+.. +..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~---G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 34799999999999999999998764432 23678998887776542 555655322 223455555555
Q ss_pred HHHh-cCccEEEEEecCcc
Q 047556 283 KKAV-DGKKIFLVLDDVWN 300 (1175)
Q Consensus 283 ~~~l-~~~r~LlVlDdv~~ 300 (1175)
+... +.+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 5433 34567999998843
No 439
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.98 E-value=0.93 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 68999999999999999998754
No 440
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.97 E-value=0.24 Score=50.52 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.95 E-value=0.27 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+.|.|.|+.|+||||||.++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999874
No 442
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.92 E-value=0.24 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 443
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.86 E-value=0.26 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..|.|.|++|+||||+|+.+.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 444
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.84 E-value=0.25 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999853
No 445
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.79 E-value=0.27 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999999864
No 446
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.69 E-value=1.3 Score=50.13 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=50.9
Q ss_pred EEEEEEccCCChHHHHH-HHHhccccc----cccccc-eEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCccch
Q 047556 210 AVIPIVGMGGIGKTTLA-REVYNDKEV----ETFKFD-IKAWVCVSEDF-DVLSISRAILESITYS-------SCDLKAL 275 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~~f~-~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~ 275 (1175)
.-++|+|..|+|||+|| ..+.+.... .. +.+ .++++-+++.. ...++.+++.+.=... ..+....
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~-~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE-KKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCT-TTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhcccccc-CCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 56799999999999995 566665331 01 234 46778887665 4556666665421111 0111111
Q ss_pred HH-----HHHHHHHHh--cCccEEEEEecC
Q 047556 276 NE-----VQVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 276 ~~-----~~~~l~~~l--~~~r~LlVlDdv 298 (1175)
.. ..-.+.+++ .++.+|+++||+
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 11 112234444 578999999998
No 447
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.65 E-value=1.2 Score=52.59 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=65.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcccccc-cc-ccc-eEEEEEeCC----CCCHHHHH--------------HHHHHHhcCC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVE-TF-KFD-IKAWVCVSE----DFDVLSIS--------------RAILESITYS 268 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~-~f~-~~~wv~~s~----~~~~~~~~--------------~~il~~l~~~ 268 (1175)
.+++|+|+.|+|||||++.++.-.... +. .+. .+.++.-.. ..++.+.+ .++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 689999999999999999998743221 10 111 233432211 11222222 2334444443
Q ss_pred CCC------ccchHHHHHHHHHHhcCccEEEEEecCccC-CcccHHHHhcccCCC--CCCcEEEEecCChhhhhh
Q 047556 269 SCD------LKALNEVQVQLKKAVDGKKIFLVLDDVWNE-DYGLWEDLKAPLMGA--APNSKIVVTTRHSHVAST 334 (1175)
Q Consensus 269 ~~~------~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~ 334 (1175)
... .+.-+...-.|...|...+-+++||.--.. |...-..+...+... ..|..||++|.+...+..
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 211 111222233456677788889999986331 222222233332221 236678888888776654
No 448
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=87.49 E-value=1.3 Score=50.58 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=34.9
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC-CHHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF-DVLSISRAI 261 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 261 (1175)
.-++|.|..|+|||+|++++.+.. +-+.++++-+++.. ...++++++
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred CEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 678999999999999999998742 34567888887663 444555443
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.33 E-value=0.34 Score=46.53 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.24 E-value=0.28 Score=55.42 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
....+|.|+|++|+||||+|+.+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999874
No 451
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.23 E-value=0.32 Score=53.14 Aligned_cols=26 Identities=42% Similarity=0.434 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999887643
No 452
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.19 E-value=0.69 Score=60.73 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CccchHHHHHHHHH
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSC-----DLKALNEVQVQLKK 284 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 284 (1175)
+++.|+|.+|+||||||.+++..... .-..++|++.....+... ++.++.+.. +..+.++....++.
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Q ss_pred Hh-cCccEEEEEecC
Q 047556 285 AV-DGKKIFLVLDDV 298 (1175)
Q Consensus 285 ~l-~~~r~LlVlDdv 298 (1175)
.. +.+.-+||+|-+
T Consensus 456 lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHhcCCCEEEECCH
No 453
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.18 E-value=1.3 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
-.+++|+|+.|+|||||.+.+.--
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 379999999999999999998764
No 454
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.11 E-value=0.28 Score=48.21 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 455
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.11 E-value=0.23 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998754
No 456
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.10 E-value=0.3 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998865
No 457
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.08 E-value=1.1 Score=50.24 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=50.1
Q ss_pred EEEEEEccCCChHHHHH-HHHhccccccccccc-eEEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCccchHH--
Q 047556 210 AVIPIVGMGGIGKTTLA-REVYNDKEVETFKFD-IKAWVCVSEDF-DVLSISRAILESITYSS-------CDLKALNE-- 277 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~-- 277 (1175)
.-++|.|..|+|||+|| ..+.+.. ..+ .++++-+++.. ...++.+++.+.=.... .+.....+
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 56799999999999996 5676642 233 35788888765 45566666544311110 11111111
Q ss_pred ---HHHHHHHHh--cCccEEEEEecC
Q 047556 278 ---VQVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 278 ---~~~~l~~~l--~~~r~LlVlDdv 298 (1175)
..-.+.+++ +++.+||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 111233444 589999999998
No 458
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.07 E-value=0.29 Score=51.45 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999875
No 459
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.01 E-value=1.9 Score=50.77 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.+.--
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 69999999999999999998753
No 460
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.00 E-value=0.31 Score=50.96 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999864
No 461
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.90 E-value=0.35 Score=46.02 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998765
No 462
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.88 E-value=0.54 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.123 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..+++|+|+.|+|||||++.+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 369999999999999999999863
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.86 E-value=0.31 Score=52.46 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYN 231 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~ 231 (1175)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 464
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.86 E-value=0.16 Score=54.12 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=19.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+..+|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999863
No 465
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.84 E-value=2.4 Score=58.76 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=73.7
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-ccchHHHHHHHHHHhcC
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSSCD-LKALNEVQVQLKKAVDG 288 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~~ 288 (1175)
+-|.++|++|+|||++|+.+..... .+ ..+.++++...+...+++.+-..+...... ..-.. -.-.+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~----~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~-------P~~~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS----LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLL-------PKSDI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS----SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEE-------EBSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC----CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcccc-------CCCCC
Confidence 5678999999999999977765421 22 345677787777766665555444321100 00000 00146
Q ss_pred ccEEEEEecCccCCcc------cHHHHhcccCCC-----CC-------CcEEEEecCChh------hhh-hcCCCCeeeC
Q 047556 289 KKIFLVLDDVWNEDYG------LWEDLKAPLMGA-----AP-------NSKIVVTTRHSH------VAS-TMEPIQQYNL 343 (1175)
Q Consensus 289 ~r~LlVlDdv~~~~~~------~~~~l~~~l~~~-----~~-------gs~iivTtr~~~------v~~-~~~~~~~~~l 343 (1175)
++.++.+||+.-...+ ..+.+...+..+ .. +..+|-|+.... +.. -..-..++.+
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i 1415 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEEC
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEe
Confidence 7899999997432222 233333333221 11 223444443321 100 1112256778
Q ss_pred CCCChhhhHHHHHhhh
Q 047556 344 RCLSDEDCWSLFMMHA 359 (1175)
Q Consensus 344 ~~L~~~e~~~lf~~~~ 359 (1175)
...++++-..+|....
T Consensus 1416 ~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8888887777776554
No 466
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.76 E-value=0.33 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.++.-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 68999999999999999998863
No 467
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.75 E-value=0.36 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||.+.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 79999999999999999998753
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.74 E-value=0.36 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
....+|+|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34479999999999999999998763
No 469
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.71 E-value=0.37 Score=48.26 Aligned_cols=107 Identities=11% Similarity=0.115 Sum_probs=54.3
Q ss_pred EEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcc--chHHHHHHHH
Q 047556 211 VIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILESITYSS-----CDLK--ALNEVQVQLK 283 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~--~~~~~~~~l~ 283 (1175)
.|.+.|.||+||||+|..++......+ ++ +..+.+......... ..+..+.... .... ....+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G--~~-V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG--VR-VMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT--CC-EEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC--CC-EEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHHH--
Confidence 478899999999999988877544332 33 444555443333211 1222221110 0000 00111111
Q ss_pred HHhcCccEEEEEecCccC------CcccHHHHhcccCCCCCCcEEEEecCCh
Q 047556 284 KAVDGKKIFLVLDDVWNE------DYGLWEDLKAPLMGAAPNSKIVVTTRHS 329 (1175)
Q Consensus 284 ~~l~~~r~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 329 (1175)
+..+.=++|+|++-.. ....|..+...++ .|..|+.|+.-+
T Consensus 81 --L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 --LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp --HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred --HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 2234669999986321 1235666655333 355788877644
No 470
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.66 E-value=0.27 Score=49.46 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 471
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.60 E-value=0.32 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||.+.++--
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 472
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.57 E-value=0.32 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999999864
No 473
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.50 E-value=0.39 Score=49.09 Aligned_cols=27 Identities=41% Similarity=0.466 Sum_probs=23.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHhcccc
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKE 234 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 234 (1175)
....|+|.|+.|+||||+++.+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999988543
No 474
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.50 E-value=0.83 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.+..-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 68999999999999999988754
No 475
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.44 E-value=0.37 Score=52.01 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=30.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCC
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDF 252 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 252 (1175)
...++|+|+|-||+||||+|..++......+ ..++-|++....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G---~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEeCCCCC
Confidence 4558999999999999999988876543322 245666665443
No 476
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.41 E-value=0.61 Score=48.18 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 191 KAKILEMVSANSPSGHANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 191 ~~~l~~~l~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...+..++.... +.-..+.++|++|+|||.+|.++++.
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 344556665431 22356999999999999999999874
No 477
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.40 E-value=0.35 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999873
No 478
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.38 E-value=0.33 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998753
No 479
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.31 E-value=0.36 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.++--
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998763
No 480
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.24 E-value=0.36 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.+..-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 78999999999999999998753
No 481
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.23 E-value=0.79 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.+..-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 482
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.22 E-value=2 Score=48.72 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=33.7
Q ss_pred cEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHH
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILE 263 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~ 263 (1175)
..++.|.|.+|+||||+|..++.+...++ ..++|++... +...+...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEECCC--CHHHHHHHHHH
Confidence 36899999999999999999887643322 2566666543 33344444444
No 483
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.18 E-value=0.38 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 484
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.18 E-value=0.42 Score=49.91 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=55.0
Q ss_pred EEEEEEccCCChHHHHHHHHhccccccccccceEEEEEe-CCCCCHHHHHHHHHH--HhcCCCCCccchHHHHHHHHHHh
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCV-SEDFDVLSISRAILE--SITYSSCDLKALNEVQVQLKKAV 286 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~l~~~l 286 (1175)
.+++|+|+.|+|||||++.+..-... .+...+++.- .-.+-.... ..+.. .++. +.......+...+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~---~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl------~~~~l~~~la~aL 95 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE------DTKSFADALRAAL 95 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT------TBSCHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCC---CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC------CHHHHHHHHHHHH
Confidence 79999999999999999998764321 1122332221 100000000 00000 0000 0012344566666
Q ss_pred cCccEEEEEecCccCCcccHHHHhcccCCCCCCcEEEEecCChhhh
Q 047556 287 DGKKIFLVLDDVWNEDYGLWEDLKAPLMGAAPNSKIVVTTRHSHVA 332 (1175)
Q Consensus 287 ~~~r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 332 (1175)
...+-+|++|... +......+.... ..|.-|++||.+....
T Consensus 96 ~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 96 REDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred hhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 6677788999985 233333332222 2466788888765543
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.12 E-value=0.39 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
..|+|.|..|+||||+++.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 486
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.10 E-value=0.34 Score=48.28 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHhcc
Q 047556 209 IAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 209 ~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 487
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.09 E-value=0.37 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999998764
No 488
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.09 E-value=0.41 Score=54.20 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhccc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYNDK 233 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 233 (1175)
....+++|+|..|+|||||++.++.-.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 345799999999999999999988643
No 489
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.96 E-value=0.38 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHhcc
Q 047556 207 ANIAVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
....+|+|+|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999863
No 490
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.95 E-value=1.2 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
+++.|.|.+|+||||++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999998877653
No 491
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=85.92 E-value=0.95 Score=51.10 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=48.7
Q ss_pred EEEEEEccCCChHHHHH-HHHhccccccccccc-eEEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCccc----
Q 047556 210 AVIPIVGMGGIGKTTLA-REVYNDKEVETFKFD-IKAWVCVSEDFD-VLSISRAILESITY--------SSCDLKA---- 274 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~il~~l~~--------~~~~~~~---- 274 (1175)
.-++|+|..|+|||+|| ..+.+.. ..+ .++++-+++... ..++.+++.+.=.. ..++...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 56799999999999996 5777753 234 357777776643 44555555432111 1111111
Q ss_pred hHHHHHHHHHHh--cCccEEEEEecC
Q 047556 275 LNEVQVQLKKAV--DGKKIFLVLDDV 298 (1175)
Q Consensus 275 ~~~~~~~l~~~l--~~~r~LlVlDdv 298 (1175)
.....-.+.+++ +++.+|+++||+
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111112233333 589999999998
No 492
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.89 E-value=0.38 Score=50.52 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 493
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.83 E-value=0.37 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 68999999999999999999864
No 494
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.76 E-value=0.99 Score=45.32 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.8
Q ss_pred EEEEEEccCCChHHHHHHHHhccccc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYNDKEV 235 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 235 (1175)
..|.|.|+.|+||||+++.+.+....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999876543
No 495
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.73 E-value=3.3 Score=48.07 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=36.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHhccccccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 047556 208 NIAVIPIVGMGGIGKTTLAREVYNDKEVETFKFDIKAWVCVSEDFDVLSISRAILES 264 (1175)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~ 264 (1175)
.-.++.|.|.+|+||||||.+++.+.... .-..++|++... +...+...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 33789999999999999999988764332 123567777654 455666666544
No 496
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.60 E-value=0.36 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.++.|+|++|+||||||..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
No 497
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.55 E-value=2 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|.|||||++.+..-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999988764
No 498
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.54 E-value=0.39 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 499
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.53 E-value=0.39 Score=45.87 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhcc
Q 047556 211 VIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 211 vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 500
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.51 E-value=0.41 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcc
Q 047556 210 AVIPIVGMGGIGKTTLAREVYND 232 (1175)
Q Consensus 210 ~vv~I~G~gGiGKTtLa~~v~~~ 232 (1175)
.+++|+|+.|+|||||.+.++--
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 68999999999999999998753
Done!