BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047558
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 29 RKQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSL 69
R ++ PGP P PVIGN+L+ G K KSL NL+K++G + +L
Sbjct: 9 RGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTL 50
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 34 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSL 69
PGP P PVIGN+L+ G K KSL NL+K++G + +L
Sbjct: 12 PGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTL 48
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 29 RKQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSL 69
R ++ PGP P PVIGN+L+ K KSL NL+KI+G + +L
Sbjct: 9 RGKLPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTL 50
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic
Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic
Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 34 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSL 69
PGP P P+IGN+L+ K KS N +K++G + ++
Sbjct: 13 PGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTV 49
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 34 PGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLK 70
PGP +P+IG++L G PH +L+ +++ +G ++ ++
Sbjct: 14 PGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIR 50
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 34 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSL 69
PGP P+P+IGN+L+ K KSL ++ +G + ++
Sbjct: 13 PGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTV 49
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 34 PGPKPYPVIGNLLE---PGG--KPHKSLANLTKIHGRIMSLK 70
PGP +P++G+LLE GG K H +LA K +G+I +K
Sbjct: 27 PGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMK 68
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between
Alpha- Naphthoflavone And Human Cytochrome P450 1b1
(Cyp1b1)
Length = 507
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 34 PGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLK 70
PGP +P+IGN G H S A L + +G + ++
Sbjct: 12 PGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIR 48
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 29 RKQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLKTWP 73
+ ++ PGP P P IGN L+ + + SL +++ +G + ++ P
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGP 53
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 29 RKQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLKTWP 73
+ ++ PGP P P IGN L+ + + SL +++ +G + ++ P
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGP 53
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX WITH Pilocarpine
Length = 476
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 29 RKQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLKTWP 73
+ ++ PGP P P IGN L+ + + SL +++ +G + ++ P
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGP 53
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6
N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6
N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6
N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6
N297qI300V
Length = 476
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 29 RKQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLKTWP 73
+ ++ PGP P P IGN L+ + + SL +++ +G + ++ P
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGP 53
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6
L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6
L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6
L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6
L240cN297Q
Length = 476
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 29 RKQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLKTWP 73
+ ++ PGP P P IGN L+ + + SL +++ +G + ++ P
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGP 53
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 29 RKQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLKTWP 73
+ ++ PGP P P IGN L+ + + SL +++ +G + ++ P
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGP 53
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In
Complex With Alpha-Naphthoflavone
Length = 495
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 34 PGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLK 70
P P +P++G++L G PH +L+ +++ +G ++ ++
Sbjct: 19 PEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIR 55
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 29 RKQVRPGPKPYPVIGNL--LEPGGKPHKSLANLTKIHGRIMSL 69
+ ++ PGP P P+IGNL LE P KS L + G + +L
Sbjct: 8 KGKLPPGPFPLPIIGNLFQLELKNIP-KSFTRLAQRFGPVFTL 49
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 34 PGPKPYPVIGNLLEPG-----GKPHKSLANLTKIHGRIMSL 69
PGP+P P ++EPG G K AN+ K H M+
Sbjct: 294 PGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAF 334
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A
Closed Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A
Closed Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 34 PGPKPYPVIGNLLE 47
PGP P PV+GNLL+
Sbjct: 13 PGPSPLPVLGNLLQ 26
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 34 PGPKPYPVIGNLLE 47
PGP P PV+GNLL+
Sbjct: 13 PGPSPLPVLGNLLQ 26
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 34 PGPKPYPVIGNLLE 47
PGP P PV+GNLL+
Sbjct: 13 PGPSPLPVLGNLLQ 26
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 34 PGPKPYPVIGNLLE 47
PGP P PV+GNLL+
Sbjct: 13 PGPSPLPVLGNLLQ 26
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex
With Anti- Platelet Drug Clopidogrel
Length = 479
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 34 PGPKPYPVIGNLLE 47
PGP P PV+GNLL+
Sbjct: 13 PGPSPLPVLGNLLQ 26
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 67 MSLKTWPDLRRKKINDLLAS 86
++LK+WP+LR +ND L S
Sbjct: 237 IALKSWPNLRELGLNDCLLS 256
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 67 MSLKTWPDLRRKKINDLLAS 86
++LK+WP+LR +ND L S
Sbjct: 238 IALKSWPNLRELGLNDCLLS 257
>pdb|1XKS|A Chain A, The Crystal Structure Of The N-Terminal Domain Of Nup133
Reveals A Beta-Propeller Fold Common To Several
Nucleoporins
Length = 450
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 6 SCILWLVFTFVWVMALSFISRRRR-KQVRPGPKPYPVIGNLL-----EPGGKPHKSLANL 59
+C++ +W +ALS I++ K+++ P + +L+ P G+ H + A
Sbjct: 51 ACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVA 110
Query: 60 TKIHGRIMSLKTWPDL 75
+ R S++ WP L
Sbjct: 111 VMVATREGSIRYWPSL 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,446,698
Number of Sequences: 62578
Number of extensions: 120232
Number of successful extensions: 310
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 29
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)