BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047559
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 19 LAPHGGDLLNFVSQLGGGVASELKKWEDCLMMIQAVLRDAEE--KQLTDEAVKLWLDDLR 76
L P G+LL +L GV ++ L A L E ++ D KLW D++R
Sbjct: 6 LIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWADEVR 65
Query: 77 DLAYDAEDILDEF 89
+L+Y ED++D+F
Sbjct: 66 ELSYVIEDVVDKF 78
>pdb|3U84|A Chain A, Crystal Structure Of Human Menin
pdb|3U84|B Chain B, Crystal Structure Of Human Menin
pdb|3U85|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1
pdb|3U86|A Chain A, Crystal Structure Of Human Menin In Complex With Jund
pdb|3U88|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
pdb|3U88|B Chain B, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
Length = 550
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 120 FGCFKIQNTVNFNGKMRSSIKDITGRFDQLCNQRIHLGLQLTPGGTSSTTTAQRRTPTSS 179
+ F +Q+ F G++R ++ ++G + T G +TAQ PT+S
Sbjct: 436 WATFLVQSLGRFEGQVRQKVRIVSGT------------VAGTARGPEGGSTAQVPAPTAS 483
Query: 180 VSTERAVFGRQQDKAKMLEMVLTDTSSDHSNL 211
E V Q +K K ++ +L T + S +
Sbjct: 484 PPPEGPVLTFQSEKMKGMKELLVATKINSSAI 515
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 317 AAAPNSKIIVTTRHAHVAA-----TMEPIQQYNLQCLSDEDCWSLFMMHA------FVGQ 365
A+ PN T HVA T +P+QQ + +S E C SL+ + A FV +
Sbjct: 116 ASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQE 175
Query: 366 DITAQQISDLFREKVVGKCGGLPLAAKTLG 395
D+ + ++ G GG PL+ G
Sbjct: 176 DMVCAGYVEGGKDACQGDSGG-PLSCPVEG 204
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 317 AAAPNSKIIVTTRHAHVAA-----TMEPIQQYNLQCLSDEDCWSLFMMHA------FVGQ 365
A+ PN T HVA T +P+QQ + +S E C SL+ + A FV +
Sbjct: 116 ASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQE 175
Query: 366 DITAQQISDLFREKVVGKCGGLPLAAKTLG 395
D+ + ++ G GG PL+ G
Sbjct: 176 DMVCAGYVEGGKDACQGDSGG-PLSCPVEG 204
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 187 FGRQQDKAKMLE--MVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDV 244
F Q A++LE + + D + ++ I + G AGVGKT +E+ N+ A F V
Sbjct: 130 FAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSV 189
Query: 245 KAWV 248
V
Sbjct: 190 FTGV 193
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 187 FGRQQDKAKMLE--MVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDV 244
F Q A++LE + + D + ++ I + G AGVGKT +E+ N+ A F V
Sbjct: 157 FAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSV 216
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 187 FGRQQDKAKMLE--MVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDV 244
F Q A++LE + + D + ++ I + G AGVGKT +E+ N+ A F V
Sbjct: 130 FAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSV 189
Query: 245 KAWV 248
V
Sbjct: 190 FTGV 193
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 187 FGRQQDKAKMLE--MVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDV 244
F Q A++LE + + D + ++ I + G AGVGKT +E+ N+ A F V
Sbjct: 124 FAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSV 183
Query: 245 KAWV 248
V
Sbjct: 184 FTGV 187
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 187 FGRQQDKAKMLE--MVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDV 244
F Q A++LE + + D + ++ I + G AGVGKT +E+ N+ A F V
Sbjct: 119 FAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSV 178
Query: 245 KAWV 248
V
Sbjct: 179 FTGV 182
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 187 FGRQQDKAKMLE--MVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDV 244
F Q A++LE + + D + ++ I + G AGVGKT +E+ N+ A F V
Sbjct: 119 FAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSV 178
Query: 245 KAWV 248
V
Sbjct: 179 FTGV 182
>pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
Length = 397
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 336 TMEPIQQYNLQCLSDE-DCWSLFMMHAFVGQ-------DITAQQISDLFREKVVGKCGGL 387
T+ +++YNL + W L M G+ D +AQ++ DL G GL
Sbjct: 208 TIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGL 267
Query: 388 PLAAKTLGGLLRSKR 402
+ + GGLL+++R
Sbjct: 268 MIKTQKAGGLLKAQR 282
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 205 SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKA 246
SS N+ + I+G +GVGKT+L ND+ + K + A
Sbjct: 2 SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,019,251
Number of Sequences: 62578
Number of extensions: 446687
Number of successful extensions: 1339
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1337
Number of HSP's gapped (non-prelim): 21
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)