Query 047559
Match_columns 444
No_of_seqs 319 out of 2364
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 12:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.5E-54 7.5E-59 450.1 30.2 385 35-444 24-418 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 4E-41 8.8E-46 317.8 10.9 248 189-444 1-257 (287)
3 PLN03210 Resistant to P. syrin 100.0 5.6E-33 1.2E-37 305.0 24.6 246 182-444 182-444 (1153)
4 PRK00411 cdc6 cell division co 99.5 6.8E-12 1.5E-16 123.9 22.7 227 182-412 28-281 (394)
5 TIGR03015 pepcterm_ATPase puta 99.5 3E-11 6.6E-16 112.8 23.9 181 212-398 44-242 (269)
6 PF01637 Arch_ATPase: Archaeal 99.4 3.1E-12 6.6E-17 116.7 12.5 195 186-393 1-233 (234)
7 PRK04841 transcriptional regul 99.3 1.4E-10 3.1E-15 126.8 19.0 196 183-401 13-232 (903)
8 TIGR02928 orc1/cdc6 family rep 99.3 6.7E-10 1.4E-14 108.5 20.6 207 183-392 14-244 (365)
9 PF05729 NACHT: NACHT domain 99.2 9.1E-11 2E-15 100.9 11.6 143 212-361 1-163 (166)
10 COG2256 MGS1 ATPase related to 99.1 5.3E-10 1.1E-14 104.6 10.6 158 209-394 46-212 (436)
11 TIGR00635 ruvB Holliday juncti 99.0 1.6E-09 3.4E-14 103.2 11.6 193 185-397 5-204 (305)
12 PRK06893 DNA replication initi 99.0 8.4E-09 1.8E-13 93.5 14.5 155 212-398 40-207 (229)
13 PRK00080 ruvB Holliday junctio 99.0 2.4E-09 5.1E-14 102.8 11.5 194 184-397 25-225 (328)
14 PRK13342 recombination factor 99.0 8.9E-09 1.9E-13 101.8 14.2 193 185-412 13-218 (413)
15 PTZ00112 origin recognition co 98.9 5E-08 1.1E-12 100.3 18.0 214 183-398 754-986 (1164)
16 PF13401 AAA_22: AAA domain; P 98.9 4.9E-09 1.1E-13 86.4 8.6 117 212-330 5-125 (131)
17 TIGR03420 DnaA_homol_Hda DnaA 98.9 3E-08 6.4E-13 90.0 12.9 171 189-397 22-204 (226)
18 PRK14961 DNA polymerase III su 98.9 1.3E-07 2.8E-12 91.9 17.8 184 184-394 16-220 (363)
19 PRK07003 DNA polymerase III su 98.9 7.2E-08 1.6E-12 98.5 16.1 180 184-393 16-220 (830)
20 PF13191 AAA_16: AAA ATPase do 98.9 5.6E-09 1.2E-13 91.5 7.2 51 185-238 1-51 (185)
21 PRK05564 DNA polymerase III su 98.8 1.3E-07 2.8E-12 90.2 16.7 177 185-392 5-188 (313)
22 PRK12402 replication factor C 98.8 1.1E-07 2.4E-12 91.8 15.9 216 184-411 15-247 (337)
23 PRK12323 DNA polymerase III su 98.8 1.3E-07 2.8E-12 95.4 15.7 181 184-394 16-225 (700)
24 PRK14963 DNA polymerase III su 98.8 2.2E-08 4.8E-13 100.5 10.3 198 184-392 14-215 (504)
25 PRK14960 DNA polymerase III su 98.8 1.7E-07 3.7E-12 94.8 16.5 184 184-394 15-219 (702)
26 PRK14949 DNA polymerase III su 98.8 1.5E-07 3.2E-12 98.1 16.2 184 184-394 16-220 (944)
27 KOG2028 ATPase related to the 98.8 1.3E-07 2.8E-12 87.3 13.5 158 209-389 160-331 (554)
28 PF05496 RuvB_N: Holliday junc 98.8 7.6E-08 1.7E-12 84.4 11.1 182 184-399 24-226 (233)
29 COG1474 CDC6 Cdc6-related prot 98.7 1.4E-06 3E-11 84.0 20.1 205 185-393 18-237 (366)
30 cd00009 AAA The AAA+ (ATPases 98.7 1.2E-07 2.6E-12 79.3 11.1 125 187-332 1-131 (151)
31 COG2909 MalT ATP-dependent tra 98.7 5.8E-07 1.3E-11 91.9 17.7 199 183-401 18-240 (894)
32 PF13173 AAA_14: AAA domain 98.7 5.7E-08 1.2E-12 79.7 8.4 119 212-353 3-127 (128)
33 PRK14957 DNA polymerase III su 98.7 5.1E-07 1.1E-11 91.0 16.8 179 184-389 16-215 (546)
34 PRK00440 rfc replication facto 98.7 6.8E-07 1.5E-11 85.6 17.1 184 184-395 17-204 (319)
35 PLN03025 replication factor C 98.7 4.6E-07 1E-11 86.5 15.8 185 184-394 13-200 (319)
36 PTZ00202 tuzin; Provisional 98.7 1.9E-07 4E-12 89.4 12.6 169 177-360 255-433 (550)
37 PRK06645 DNA polymerase III su 98.7 8.6E-07 1.9E-11 88.8 17.9 197 184-394 21-229 (507)
38 TIGR02397 dnaX_nterm DNA polym 98.7 1.1E-06 2.5E-11 85.4 18.1 184 184-395 14-219 (355)
39 PRK14956 DNA polymerase III su 98.7 3.4E-07 7.4E-12 90.0 14.2 199 184-395 18-223 (484)
40 COG3899 Predicted ATPase [Gene 98.7 1.7E-07 3.6E-12 100.1 13.1 209 185-401 1-267 (849)
41 PRK08691 DNA polymerase III su 98.7 4.9E-07 1.1E-11 92.3 15.4 185 184-395 16-221 (709)
42 PRK14951 DNA polymerase III su 98.7 7.1E-07 1.5E-11 91.1 16.4 198 184-394 16-225 (618)
43 PRK07994 DNA polymerase III su 98.7 5.1E-07 1.1E-11 92.4 15.3 195 184-395 16-221 (647)
44 PRK14964 DNA polymerase III su 98.7 9E-07 1.9E-11 88.0 16.6 185 184-394 13-217 (491)
45 PRK14958 DNA polymerase III su 98.7 8.3E-07 1.8E-11 89.4 16.6 186 184-395 16-221 (509)
46 PRK08727 hypothetical protein; 98.7 9.9E-07 2.2E-11 80.2 15.3 151 212-394 42-204 (233)
47 PRK07471 DNA polymerase III su 98.6 1.8E-06 3.8E-11 83.4 17.5 194 183-395 18-239 (365)
48 cd01128 rho_factor Transcripti 98.6 7.1E-08 1.5E-12 87.8 7.4 89 212-302 17-114 (249)
49 TIGR02903 spore_lon_C ATP-depe 98.6 8.2E-07 1.8E-11 91.7 16.1 202 185-397 155-398 (615)
50 PRK04195 replication factor C 98.6 8.2E-07 1.8E-11 89.7 15.7 186 184-398 14-206 (482)
51 PRK05896 DNA polymerase III su 98.6 1.3E-06 2.9E-11 88.2 16.4 191 184-391 16-217 (605)
52 PRK14962 DNA polymerase III su 98.6 1.5E-06 3.2E-11 86.8 16.5 201 184-411 14-240 (472)
53 TIGR00678 holB DNA polymerase 98.6 2.6E-06 5.7E-11 74.8 15.9 91 290-390 95-187 (188)
54 PRK08903 DnaA regulatory inact 98.6 1.1E-06 2.3E-11 79.9 13.9 174 186-399 21-204 (227)
55 PRK09087 hypothetical protein; 98.6 1.4E-06 2.9E-11 78.7 14.3 143 212-396 45-197 (226)
56 PRK09112 DNA polymerase III su 98.6 2.8E-06 6E-11 81.6 17.2 199 182-395 21-241 (351)
57 PRK14969 DNA polymerase III su 98.6 2.7E-06 5.8E-11 86.4 17.7 184 184-393 16-219 (527)
58 PRK13341 recombination factor 98.6 8.8E-07 1.9E-11 92.5 14.5 175 184-392 28-215 (725)
59 PRK07940 DNA polymerase III su 98.6 2.1E-06 4.6E-11 83.6 16.0 180 185-392 6-211 (394)
60 PRK08084 DNA replication initi 98.6 2.2E-06 4.7E-11 78.0 14.8 155 212-398 46-213 (235)
61 PF05621 TniB: Bacterial TniB 98.5 4.3E-06 9.4E-11 76.9 16.2 199 192-395 45-262 (302)
62 PRK07764 DNA polymerase III su 98.5 3.2E-06 6.9E-11 89.5 17.2 180 185-392 16-219 (824)
63 PRK09111 DNA polymerase III su 98.5 3E-06 6.6E-11 86.7 16.4 198 184-395 24-234 (598)
64 PF00308 Bac_DnaA: Bacterial d 98.5 4.5E-06 9.7E-11 75.0 15.4 190 183-396 8-210 (219)
65 PRK09376 rho transcription ter 98.5 3E-07 6.5E-12 87.5 8.0 89 212-302 170-267 (416)
66 PRK14955 DNA polymerase III su 98.5 2.2E-06 4.9E-11 84.3 14.6 200 184-394 16-228 (397)
67 PRK14959 DNA polymerase III su 98.5 5.3E-06 1.2E-10 84.4 17.1 197 184-397 16-224 (624)
68 PRK14950 DNA polymerase III su 98.5 2.6E-06 5.7E-11 87.8 15.0 197 184-396 16-223 (585)
69 PRK05642 DNA replication initi 98.5 5.6E-06 1.2E-10 75.3 14.9 155 212-398 46-212 (234)
70 PRK14952 DNA polymerase III su 98.5 9.6E-06 2.1E-10 82.7 17.8 189 184-389 13-214 (584)
71 PRK14970 DNA polymerase III su 98.4 1E-05 2.2E-10 79.1 16.9 184 184-393 17-208 (367)
72 PRK14953 DNA polymerase III su 98.4 1.5E-05 3.2E-10 80.0 18.2 185 184-395 16-221 (486)
73 PRK14087 dnaA chromosomal repl 98.4 1.2E-05 2.6E-10 80.1 17.4 185 211-412 141-347 (450)
74 KOG2227 Pre-initiation complex 98.4 1.4E-05 3E-10 76.8 16.2 209 182-393 148-371 (529)
75 TIGR00767 rho transcription te 98.4 1.1E-06 2.5E-11 84.0 8.0 89 212-302 169-266 (415)
76 PRK14954 DNA polymerase III su 98.4 1.6E-05 3.4E-10 81.7 16.8 198 184-391 16-225 (620)
77 TIGR01242 26Sp45 26S proteasom 98.4 7.3E-06 1.6E-10 79.9 13.8 179 183-388 121-328 (364)
78 PHA02544 44 clamp loader, smal 98.3 5.2E-06 1.1E-10 79.4 12.3 147 184-358 21-170 (316)
79 PRK08451 DNA polymerase III su 98.3 2.8E-05 6E-10 78.3 17.7 181 184-395 14-219 (535)
80 PF14516 AAA_35: AAA-like doma 98.3 4.8E-05 1E-09 72.9 18.4 201 183-401 10-246 (331)
81 PRK07133 DNA polymerase III su 98.3 2.6E-05 5.7E-10 80.6 17.5 191 184-393 18-218 (725)
82 PRK14971 DNA polymerase III su 98.3 2.9E-05 6.3E-10 80.1 17.7 184 184-394 17-222 (614)
83 TIGR02881 spore_V_K stage V sp 98.3 1.2E-05 2.5E-10 74.6 13.5 161 185-362 7-192 (261)
84 TIGR00362 DnaA chromosomal rep 98.3 2.7E-05 6E-10 77.0 17.0 181 211-412 136-336 (405)
85 KOG2543 Origin recognition com 98.3 4.9E-05 1.1E-09 71.3 17.2 169 183-360 5-192 (438)
86 CHL00181 cbbX CbbX; Provisiona 98.3 5.5E-05 1.2E-09 70.8 17.8 135 212-363 60-211 (287)
87 PRK11331 5-methylcytosine-spec 98.3 5.3E-06 1.2E-10 80.8 10.7 117 184-313 175-295 (459)
88 PRK06305 DNA polymerase III su 98.3 4.5E-05 9.7E-10 76.0 17.5 180 184-391 17-219 (451)
89 TIGR03345 VI_ClpV1 type VI sec 98.3 2.7E-06 5.8E-11 91.0 9.3 155 184-360 187-362 (852)
90 PRK14948 DNA polymerase III su 98.3 4.1E-05 9E-10 79.0 17.6 198 184-396 16-224 (620)
91 TIGR02639 ClpA ATP-dependent C 98.3 9.8E-06 2.1E-10 86.0 13.4 156 184-361 182-358 (731)
92 PRK14965 DNA polymerase III su 98.3 3.9E-05 8.5E-10 78.9 17.1 189 184-389 16-215 (576)
93 KOG0989 Replication factor C, 98.2 9.9E-06 2.1E-10 73.7 10.8 183 183-387 35-223 (346)
94 PRK06647 DNA polymerase III su 98.2 6.8E-05 1.5E-09 76.6 17.9 199 184-395 16-221 (563)
95 PRK14088 dnaA chromosomal repl 98.2 4.8E-05 1E-09 75.7 16.3 158 211-389 130-300 (440)
96 PRK14086 dnaA chromosomal repl 98.2 9.9E-05 2.1E-09 75.0 18.3 157 212-389 315-483 (617)
97 CHL00095 clpC Clp protease ATP 98.2 8.6E-06 1.9E-10 87.5 11.4 156 184-359 179-352 (821)
98 PRK00149 dnaA chromosomal repl 98.2 4.4E-05 9.6E-10 76.6 15.7 181 211-412 148-348 (450)
99 PRK06620 hypothetical protein; 98.2 4.3E-05 9.4E-10 68.3 13.9 139 212-396 45-191 (214)
100 TIGR02880 cbbX_cfxQ probable R 98.2 3.2E-05 7E-10 72.4 13.5 134 212-362 59-209 (284)
101 COG2255 RuvB Holliday junction 98.2 1.5E-05 3.3E-10 71.7 10.5 182 184-399 26-228 (332)
102 PRK05563 DNA polymerase III su 98.2 0.00013 2.7E-09 74.9 18.3 195 184-395 16-221 (559)
103 PRK03992 proteasome-activating 98.2 2E-05 4.4E-10 77.2 11.8 179 183-388 130-337 (389)
104 PF05673 DUF815: Protein of un 98.1 5.8E-05 1.2E-09 67.4 13.3 126 181-334 24-154 (249)
105 PRK12422 chromosomal replicati 98.1 0.00013 2.9E-09 72.4 17.3 182 183-387 111-306 (445)
106 PF00004 AAA: ATPase family as 98.1 1.2E-05 2.6E-10 66.0 8.3 96 214-330 1-111 (132)
107 TIGR03346 chaperone_ClpB ATP-d 98.1 4.3E-05 9.4E-10 82.4 13.7 157 184-360 173-348 (852)
108 COG3903 Predicted ATPase [Gene 98.1 5E-06 1.1E-10 78.8 5.6 216 210-436 13-239 (414)
109 PRK05707 DNA polymerase III su 98.1 0.00011 2.4E-09 70.0 14.7 97 290-394 105-203 (328)
110 PRK11034 clpA ATP-dependent Cl 98.1 3.3E-05 7.2E-10 81.3 12.1 156 185-360 187-361 (758)
111 PRK07399 DNA polymerase III su 98.0 0.0003 6.5E-09 66.7 16.4 198 185-396 5-223 (314)
112 PRK10865 protein disaggregatio 98.0 9.5E-05 2.1E-09 79.6 13.5 46 184-235 178-223 (857)
113 COG0593 DnaA ATPase involved i 97.9 0.00043 9.2E-09 67.0 16.1 163 181-363 85-259 (408)
114 TIGR00602 rad24 checkpoint pro 97.9 6.6E-05 1.4E-09 77.2 11.0 52 183-235 83-134 (637)
115 PRK08116 hypothetical protein; 97.9 5.5E-05 1.2E-09 70.1 9.1 104 212-331 115-221 (268)
116 COG3267 ExeA Type II secretory 97.9 0.00072 1.6E-08 60.4 15.3 177 212-396 52-247 (269)
117 TIGR03689 pup_AAA proteasome A 97.9 0.00031 6.8E-09 70.4 14.4 168 184-361 182-378 (512)
118 KOG0991 Replication factor C, 97.9 0.00023 5E-09 62.3 11.6 103 184-314 27-136 (333)
119 TIGR00763 lon ATP-dependent pr 97.9 0.00037 7.9E-09 74.6 15.8 166 183-361 319-505 (775)
120 smart00382 AAA ATPases associa 97.9 9.7E-05 2.1E-09 60.9 9.2 88 212-304 3-91 (148)
121 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00061 1.3E-08 63.1 14.8 141 212-360 22-197 (262)
122 PRK10536 hypothetical protein; 97.8 0.00069 1.5E-08 61.4 14.3 134 185-331 56-213 (262)
123 PF13177 DNA_pol3_delta2: DNA 97.8 0.0003 6.6E-09 60.0 11.6 139 188-348 1-161 (162)
124 PRK06871 DNA polymerase III su 97.8 0.0015 3.3E-08 61.9 16.7 93 290-391 106-200 (325)
125 PRK08118 topology modulation p 97.8 1.3E-05 2.8E-10 68.8 2.3 35 213-247 3-37 (167)
126 PRK06090 DNA polymerase III su 97.8 0.002 4.2E-08 61.0 17.1 93 290-394 107-201 (319)
127 COG1373 Predicted ATPase (AAA+ 97.8 0.0004 8.7E-09 68.2 13.0 117 213-355 39-161 (398)
128 TIGR02639 ClpA ATP-dependent C 97.8 0.0004 8.6E-09 73.9 13.9 122 184-317 454-579 (731)
129 COG0542 clpA ATP-binding subun 97.7 0.0001 2.2E-09 76.5 8.6 122 183-317 490-619 (786)
130 PTZ00454 26S protease regulato 97.7 0.0004 8.6E-09 68.0 12.3 179 184-388 145-351 (398)
131 COG2812 DnaX DNA polymerase II 97.7 0.00016 3.4E-09 72.1 9.3 186 185-387 17-213 (515)
132 PRK08058 DNA polymerase III su 97.7 0.0008 1.7E-08 64.5 13.8 150 185-360 6-181 (329)
133 PRK08769 DNA polymerase III su 97.7 0.0025 5.4E-08 60.4 16.8 96 290-395 112-209 (319)
134 PF07728 AAA_5: AAA domain (dy 97.7 2.5E-05 5.5E-10 64.9 2.5 87 214-314 2-88 (139)
135 CHL00176 ftsH cell division pr 97.7 0.00095 2.1E-08 69.2 14.4 177 184-386 183-386 (638)
136 PF04665 Pox_A32: Poxvirus A32 97.7 0.00011 2.5E-09 66.0 6.6 36 212-250 14-49 (241)
137 PTZ00361 26 proteosome regulat 97.6 0.00036 7.9E-09 68.8 10.4 157 184-361 183-367 (438)
138 PRK07261 topology modulation p 97.6 0.00016 3.5E-09 62.3 7.0 35 213-247 2-36 (171)
139 KOG0741 AAA+-type ATPase [Post 97.6 0.0021 4.6E-08 62.9 14.9 162 209-399 536-717 (744)
140 PRK10865 protein disaggregatio 97.6 0.00054 1.2E-08 73.8 12.1 138 184-330 568-720 (857)
141 PRK07993 DNA polymerase III su 97.6 0.0039 8.4E-08 59.7 16.7 93 290-391 107-201 (334)
142 COG1222 RPT1 ATP-dependent 26S 97.6 0.0037 8E-08 58.6 15.6 200 185-411 152-390 (406)
143 PRK12608 transcription termina 97.6 0.00045 9.7E-09 66.0 10.0 102 193-301 120-230 (380)
144 COG0466 Lon ATP-dependent Lon 97.6 0.00031 6.8E-09 71.2 9.2 166 183-361 322-508 (782)
145 TIGR01241 FtsH_fam ATP-depende 97.6 0.0018 3.9E-08 65.8 14.6 204 184-413 55-295 (495)
146 PRK10787 DNA-binding ATP-depen 97.5 0.00057 1.2E-08 72.7 11.2 166 183-361 321-506 (784)
147 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00064 1.4E-08 73.5 11.7 138 184-330 565-717 (852)
148 PRK08181 transposase; Validate 97.5 0.00029 6.3E-09 65.1 7.7 101 212-331 107-209 (269)
149 PRK13531 regulatory ATPase Rav 97.5 0.0003 6.6E-09 69.4 8.2 152 185-360 21-193 (498)
150 COG0542 clpA ATP-binding subun 97.5 0.00029 6.3E-09 73.1 8.4 156 184-360 170-345 (786)
151 PRK12377 putative replication 97.5 0.00018 3.9E-09 65.5 6.1 101 212-330 102-205 (248)
152 PRK06964 DNA polymerase III su 97.5 0.0033 7.1E-08 60.1 14.7 92 290-393 131-224 (342)
153 PF07693 KAP_NTPase: KAP famil 97.5 0.0043 9.3E-08 59.5 15.8 74 191-267 3-80 (325)
154 PRK04132 replication factor C 97.5 0.003 6.6E-08 67.0 15.7 158 219-396 574-733 (846)
155 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00048 1.1E-08 74.0 9.8 139 183-330 565-718 (852)
156 COG0470 HolB ATPase involved i 97.5 0.0008 1.7E-08 64.5 10.5 126 185-330 2-148 (325)
157 PF02562 PhoH: PhoH-like prote 97.4 0.00037 8E-09 61.3 6.7 131 188-331 4-156 (205)
158 KOG1514 Origin recognition com 97.4 0.0045 9.8E-08 62.8 14.9 207 184-396 396-623 (767)
159 PRK06526 transposase; Provisio 97.4 0.00037 8.1E-09 63.9 6.8 100 212-331 99-201 (254)
160 TIGR02902 spore_lonB ATP-depen 97.4 0.00069 1.5E-08 69.1 9.0 44 185-234 66-109 (531)
161 CHL00095 clpC Clp protease ATP 97.4 0.00091 2E-08 72.1 10.2 138 184-330 509-661 (821)
162 PRK06921 hypothetical protein; 97.4 0.00087 1.9E-08 62.1 8.6 99 212-330 118-224 (266)
163 KOG2004 Mitochondrial ATP-depe 97.4 0.00074 1.6E-08 68.4 8.5 166 183-361 410-596 (906)
164 PF01695 IstB_IS21: IstB-like 97.3 0.00038 8.2E-09 60.3 5.8 99 212-330 48-149 (178)
165 PRK09183 transposase/IS protei 97.3 0.00087 1.9E-08 61.9 8.4 100 212-330 103-205 (259)
166 PRK11034 clpA ATP-dependent Cl 97.3 0.00091 2E-08 70.7 9.5 121 184-316 458-582 (758)
167 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00022 4.9E-09 67.8 4.4 53 183-235 50-102 (361)
168 KOG0744 AAA+-type ATPase [Post 97.3 0.0016 3.4E-08 60.1 9.5 140 212-361 178-340 (423)
169 TIGR02237 recomb_radB DNA repa 97.3 0.0014 3.1E-08 58.5 9.3 88 209-301 10-107 (209)
170 PRK08699 DNA polymerase III su 97.3 0.0045 9.8E-08 59.0 13.1 71 290-360 112-184 (325)
171 PRK07952 DNA replication prote 97.3 0.0016 3.5E-08 59.3 9.6 102 212-330 100-204 (244)
172 COG2607 Predicted ATPase (AAA+ 97.3 0.0034 7.4E-08 55.5 11.0 107 183-317 59-166 (287)
173 PRK04296 thymidine kinase; Pro 97.3 0.00064 1.4E-08 59.7 6.6 113 212-332 3-117 (190)
174 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0021 4.5E-08 58.5 10.3 92 210-302 18-126 (235)
175 COG2884 FtsE Predicted ATPase 97.3 0.0034 7.4E-08 53.6 10.5 123 212-338 29-204 (223)
176 PRK08939 primosomal protein Dn 97.3 0.0012 2.7E-08 62.3 8.9 121 188-329 135-259 (306)
177 PRK09361 radB DNA repair and r 97.3 0.002 4.2E-08 58.3 9.9 87 210-301 22-117 (225)
178 PF10443 RNA12: RNA12 protein; 97.3 0.017 3.8E-07 56.0 16.3 208 189-411 1-297 (431)
179 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0046 1E-07 62.1 12.6 180 184-388 228-429 (489)
180 COG1136 SalX ABC-type antimicr 97.2 0.0035 7.6E-08 55.8 10.5 60 278-337 147-209 (226)
181 PF13207 AAA_17: AAA domain; P 97.2 0.00027 5.8E-09 57.0 3.1 23 213-235 1-23 (121)
182 TIGR01243 CDC48 AAA family ATP 97.2 0.0062 1.3E-07 65.1 14.2 179 184-388 453-657 (733)
183 KOG1969 DNA replication checkp 97.2 0.0013 2.8E-08 66.9 8.2 83 209-312 324-408 (877)
184 TIGR02974 phageshock_pspF psp 97.2 0.0078 1.7E-07 57.6 13.3 131 186-330 1-143 (329)
185 PF14532 Sigma54_activ_2: Sigm 97.2 0.00034 7.4E-09 58.0 3.5 108 187-330 1-109 (138)
186 cd01393 recA_like RecA is a b 97.2 0.0037 8E-08 56.5 10.5 92 210-302 18-125 (226)
187 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0017 3.8E-08 64.7 8.4 99 184-303 190-294 (802)
188 PF00158 Sigma54_activat: Sigm 97.1 0.0019 4.1E-08 55.4 7.8 128 186-331 1-144 (168)
189 cd01394 radB RadB. The archaea 97.1 0.0035 7.5E-08 56.4 9.9 88 209-301 17-113 (218)
190 cd03214 ABC_Iron-Siderophores_ 97.1 0.0048 1E-07 53.6 10.4 119 212-334 26-161 (180)
191 PRK11889 flhF flagellar biosyn 97.1 0.0066 1.4E-07 58.5 11.9 26 210-235 240-265 (436)
192 KOG0735 AAA+-type ATPase [Post 97.1 0.0038 8.3E-08 63.4 10.5 153 212-387 432-608 (952)
193 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0045 9.9E-08 51.6 9.6 104 212-335 27-131 (144)
194 TIGR01243 CDC48 AAA family ATP 97.1 0.0046 1E-07 66.0 11.9 178 185-388 179-381 (733)
195 cd03247 ABCC_cytochrome_bd The 97.1 0.0046 1E-07 53.6 9.9 117 212-335 29-161 (178)
196 PRK15429 formate hydrogenlyase 97.1 0.015 3.2E-07 61.8 15.4 132 185-331 377-521 (686)
197 PRK05541 adenylylsulfate kinas 97.1 0.0013 2.9E-08 56.9 6.3 36 210-248 6-41 (176)
198 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0042 9.2E-08 53.7 9.2 102 212-335 26-136 (177)
199 TIGR02238 recomb_DMC1 meiotic 97.1 0.004 8.7E-08 59.0 9.8 92 209-301 94-201 (313)
200 KOG2228 Origin recognition com 97.0 0.0062 1.3E-07 56.6 10.5 172 185-361 25-219 (408)
201 cd01120 RecA-like_NTPases RecA 97.0 0.0029 6.3E-08 53.6 8.2 40 213-255 1-40 (165)
202 COG1484 DnaC DNA replication p 97.0 0.0013 2.7E-08 60.5 6.1 80 212-309 106-185 (254)
203 COG1223 Predicted ATPase (AAA+ 97.0 0.01 2.3E-07 53.2 11.4 156 184-361 121-297 (368)
204 COG1875 NYN ribonuclease and A 97.0 0.0025 5.4E-08 59.8 7.9 131 187-329 227-386 (436)
205 PRK13695 putative NTPase; Prov 97.0 0.00089 1.9E-08 57.9 4.8 23 213-235 2-24 (174)
206 PRK06835 DNA replication prote 97.0 0.0018 4E-08 61.6 7.2 102 212-330 184-288 (329)
207 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0034 7.3E-08 57.7 8.5 87 212-300 70-172 (274)
208 PF08423 Rad51: Rad51; InterP 97.0 0.0037 8E-08 57.6 8.9 89 212-301 39-143 (256)
209 cd03216 ABC_Carb_Monos_I This 97.0 0.0033 7.2E-08 53.7 7.9 115 212-334 27-145 (163)
210 cd03223 ABCD_peroxisomal_ALDP 97.0 0.0077 1.7E-07 51.6 10.2 117 212-335 28-152 (166)
211 PRK06696 uridine kinase; Valid 97.0 0.001 2.3E-08 60.0 4.9 45 188-235 2-46 (223)
212 TIGR01650 PD_CobS cobaltochela 97.0 0.029 6.3E-07 53.0 14.5 158 186-361 47-233 (327)
213 PF13604 AAA_30: AAA domain; P 97.0 0.0011 2.5E-08 58.4 4.9 107 212-331 19-131 (196)
214 PTZ00494 tuzin-like protein; P 96.9 0.032 7E-07 54.2 14.7 170 179-361 366-544 (664)
215 PF13671 AAA_33: AAA domain; P 96.9 0.002 4.2E-08 53.6 6.1 22 213-234 1-22 (143)
216 cd03238 ABC_UvrA The excision 96.9 0.0046 9.9E-08 53.4 8.4 114 212-335 22-153 (176)
217 PLN03187 meiotic recombination 96.9 0.0062 1.3E-07 58.3 9.7 92 209-301 124-231 (344)
218 PF12775 AAA_7: P-loop contain 96.9 0.001 2.2E-08 61.8 4.3 96 193-309 22-118 (272)
219 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0078 1.7E-07 51.9 9.5 117 212-335 27-159 (173)
220 PRK12724 flagellar biosynthesi 96.9 0.0066 1.4E-07 59.1 9.7 25 211-235 223-247 (432)
221 cd03228 ABCC_MRP_Like The MRP 96.9 0.007 1.5E-07 52.1 9.0 117 212-336 29-160 (171)
222 KOG0731 AAA+-type ATPase conta 96.9 0.015 3.2E-07 60.5 12.5 180 185-390 312-520 (774)
223 KOG0733 Nuclear AAA ATPase (VC 96.9 0.011 2.4E-07 59.1 11.2 155 211-388 545-718 (802)
224 TIGR02012 tigrfam_recA protein 96.8 0.0054 1.2E-07 58.0 8.6 86 209-302 53-144 (321)
225 COG0714 MoxR-like ATPases [Gen 96.8 0.0046 9.9E-08 59.4 8.3 107 185-315 25-136 (329)
226 COG4608 AppF ABC-type oligopep 96.8 0.0062 1.4E-07 55.3 8.5 124 212-339 40-178 (268)
227 PLN03186 DNA repair protein RA 96.8 0.0077 1.7E-07 57.6 9.7 92 209-301 121-228 (342)
228 TIGR01817 nifA Nif-specific re 96.8 0.0056 1.2E-07 63.0 9.3 136 183-331 195-341 (534)
229 PF03215 Rad17: Rad17 cell cyc 96.8 0.0061 1.3E-07 61.7 9.2 59 185-249 20-78 (519)
230 PTZ00088 adenylate kinase 1; P 96.8 0.0015 3.3E-08 58.9 4.3 23 213-235 8-30 (229)
231 TIGR03499 FlhF flagellar biosy 96.8 0.0069 1.5E-07 56.7 8.9 27 210-236 193-219 (282)
232 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.006 1.3E-07 51.4 7.6 117 212-332 3-139 (159)
233 PRK15455 PrkA family serine pr 96.8 0.001 2.2E-08 66.8 3.3 50 185-234 77-126 (644)
234 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0088 1.9E-07 56.8 9.6 92 209-301 94-201 (316)
235 PRK06067 flagellar accessory p 96.7 0.0076 1.6E-07 54.8 8.8 87 209-301 23-130 (234)
236 PRK09354 recA recombinase A; P 96.7 0.0075 1.6E-07 57.5 8.9 86 209-302 58-149 (349)
237 COG0563 Adk Adenylate kinase a 96.7 0.0028 6.1E-08 54.8 5.5 25 213-237 2-26 (178)
238 PRK03839 putative kinase; Prov 96.7 0.0024 5.2E-08 55.5 5.2 23 213-235 2-24 (180)
239 COG0396 sufC Cysteine desulfur 96.7 0.012 2.6E-07 51.9 9.3 132 212-343 31-216 (251)
240 cd00983 recA RecA is a bacter 96.7 0.0067 1.5E-07 57.4 8.4 85 209-301 53-143 (325)
241 PTZ00035 Rad51 protein; Provis 96.7 0.015 3.3E-07 55.7 10.9 93 209-302 116-224 (337)
242 COG1121 ZnuC ABC-type Mn/Zn tr 96.7 0.009 2E-07 54.1 8.7 122 212-335 31-203 (254)
243 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0066 1.4E-07 52.9 7.8 23 213-235 1-23 (183)
244 COG1126 GlnQ ABC-type polar am 96.7 0.018 4E-07 50.3 10.2 58 280-337 143-202 (240)
245 PRK04301 radA DNA repair and r 96.7 0.012 2.7E-07 56.1 10.2 91 210-301 101-208 (317)
246 PRK11608 pspF phage shock prot 96.7 0.005 1.1E-07 58.9 7.5 132 185-331 7-151 (326)
247 PRK00625 shikimate kinase; Pro 96.7 0.02 4.3E-07 49.3 10.4 23 213-235 2-24 (173)
248 cd03246 ABCC_Protease_Secretio 96.7 0.012 2.6E-07 50.8 9.2 116 212-335 29-160 (173)
249 cd01131 PilT Pilus retraction 96.7 0.0032 6.9E-08 55.7 5.6 111 212-335 2-113 (198)
250 PHA02244 ATPase-like protein 96.7 0.011 2.4E-07 56.5 9.4 22 213-234 121-142 (383)
251 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0045 9.8E-08 55.4 6.5 22 212-233 30-51 (213)
252 PF00006 ATP-synt_ab: ATP synt 96.7 0.0093 2E-07 53.1 8.4 84 212-300 16-114 (215)
253 cd02025 PanK Pantothenate kina 96.7 0.008 1.7E-07 54.0 8.1 23 213-235 1-23 (220)
254 COG4618 ArpD ABC-type protease 96.6 0.019 4.2E-07 56.4 10.9 54 283-336 482-537 (580)
255 COG1102 Cmk Cytidylate kinase 96.6 0.0036 7.8E-08 51.9 5.1 44 213-270 2-45 (179)
256 COG1419 FlhF Flagellar GTP-bin 96.6 0.021 4.5E-07 55.0 10.9 104 211-318 203-310 (407)
257 KOG1532 GTPase XAB1, interacts 96.6 0.011 2.3E-07 53.4 8.3 62 209-271 17-87 (366)
258 TIGR02236 recomb_radA DNA repa 96.6 0.02 4.4E-07 54.5 10.9 57 210-267 94-153 (310)
259 KOG1051 Chaperone HSP104 and r 96.6 0.018 4E-07 61.0 11.3 120 184-315 562-684 (898)
260 TIGR01069 mutS2 MutS2 family p 96.6 0.0024 5.2E-08 67.9 5.0 112 290-411 401-518 (771)
261 KOG2035 Replication factor C, 96.6 0.012 2.6E-07 53.2 8.5 204 186-412 15-257 (351)
262 PF00448 SRP54: SRP54-type pro 96.6 0.016 3.5E-07 51.0 9.2 55 212-269 2-57 (196)
263 PRK09270 nucleoside triphospha 96.6 0.012 2.5E-07 53.4 8.6 28 209-236 31-58 (229)
264 PRK05703 flhF flagellar biosyn 96.6 0.026 5.6E-07 55.9 11.7 85 212-300 222-308 (424)
265 PF00485 PRK: Phosphoribulokin 96.6 0.018 3.9E-07 50.7 9.6 80 213-295 1-87 (194)
266 COG1618 Predicted nucleotide k 96.6 0.0024 5.2E-08 52.9 3.6 27 212-238 6-32 (179)
267 cd03215 ABC_Carb_Monos_II This 96.5 0.021 4.6E-07 49.7 9.8 24 212-235 27-50 (182)
268 PRK08972 fliI flagellum-specif 96.5 0.012 2.6E-07 57.7 8.8 86 212-302 163-263 (444)
269 cd03369 ABCC_NFT1 Domain 2 of 96.5 0.036 7.7E-07 49.3 11.3 23 212-234 35-57 (207)
270 PRK07132 DNA polymerase III su 96.5 0.19 4.2E-06 47.2 16.6 132 212-360 19-161 (299)
271 KOG0730 AAA+-type ATPase [Post 96.5 0.034 7.4E-07 56.3 12.0 52 184-235 434-492 (693)
272 cd03229 ABC_Class3 This class 96.5 0.0096 2.1E-07 51.6 7.4 120 212-335 27-165 (178)
273 PRK05022 anaerobic nitric oxid 96.5 0.0084 1.8E-07 61.2 8.1 134 183-331 186-332 (509)
274 cd03269 ABC_putative_ATPase Th 96.5 0.022 4.7E-07 50.9 9.8 23 212-234 27-49 (210)
275 PLN00020 ribulose bisphosphate 96.5 0.0071 1.5E-07 57.6 6.8 28 209-236 146-173 (413)
276 KOG0734 AAA+-type ATPase conta 96.5 0.0051 1.1E-07 60.5 5.8 54 185-238 305-364 (752)
277 PRK06217 hypothetical protein; 96.5 0.011 2.4E-07 51.5 7.6 36 213-248 3-38 (183)
278 PF13238 AAA_18: AAA domain; P 96.5 0.0021 4.6E-08 52.2 2.9 21 214-234 1-21 (129)
279 cd03263 ABC_subfamily_A The AB 96.5 0.022 4.8E-07 51.2 9.8 23 212-234 29-51 (220)
280 PRK12727 flagellar biosynthesi 96.5 0.016 3.4E-07 58.1 9.3 25 211-235 350-374 (559)
281 cd03245 ABCC_bacteriocin_expor 96.5 0.033 7.1E-07 50.1 10.9 23 212-234 31-53 (220)
282 PRK13539 cytochrome c biogenes 96.4 0.014 3.1E-07 51.9 8.3 61 284-347 138-200 (207)
283 TIGR02329 propionate_PrpR prop 96.4 0.045 9.7E-07 55.8 12.7 133 185-331 213-358 (526)
284 PF07724 AAA_2: AAA domain (Cd 96.4 0.004 8.7E-08 53.5 4.5 40 211-252 3-42 (171)
285 PRK13540 cytochrome c biogenes 96.4 0.023 5E-07 50.3 9.5 24 212-235 28-51 (200)
286 COG0464 SpoVK ATPases of the A 96.4 0.041 8.9E-07 56.1 12.5 133 209-362 274-424 (494)
287 KOG2170 ATPase of the AAA+ sup 96.4 0.039 8.4E-07 50.7 10.7 161 184-361 82-264 (344)
288 PRK07667 uridine kinase; Provi 96.4 0.0051 1.1E-07 54.1 5.1 39 193-235 3-41 (193)
289 cd03115 SRP The signal recogni 96.4 0.024 5.1E-07 48.9 9.1 23 213-235 2-24 (173)
290 TIGR03522 GldA_ABC_ATP gliding 96.4 0.034 7.3E-07 52.7 10.8 23 212-234 29-51 (301)
291 cd03226 ABC_cobalt_CbiO_domain 96.4 0.025 5.3E-07 50.3 9.4 23 212-234 27-49 (205)
292 PRK06002 fliI flagellum-specif 96.4 0.013 2.8E-07 57.7 8.1 87 212-302 166-265 (450)
293 PRK14722 flhF flagellar biosyn 96.4 0.015 3.2E-07 56.2 8.4 88 212-302 138-226 (374)
294 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.014 3.1E-07 49.4 7.4 118 212-336 26-145 (157)
295 KOG0736 Peroxisome assembly fa 96.4 0.15 3.2E-06 52.8 15.5 99 184-303 672-776 (953)
296 COG0572 Udk Uridine kinase [Nu 96.3 0.0064 1.4E-07 53.6 5.2 27 209-235 6-32 (218)
297 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.3 0.034 7.4E-07 50.2 10.2 24 212-235 49-72 (224)
298 TIGR02858 spore_III_AA stage I 96.3 0.025 5.4E-07 52.4 9.3 129 192-336 97-234 (270)
299 cd03264 ABC_drug_resistance_li 96.3 0.03 6.4E-07 50.0 9.7 22 213-234 27-48 (211)
300 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.0052 1.1E-07 54.5 4.6 119 212-338 30-158 (204)
301 PRK13543 cytochrome c biogenes 96.3 0.038 8.3E-07 49.5 10.4 24 212-235 38-61 (214)
302 PRK05439 pantothenate kinase; 96.3 0.026 5.7E-07 53.1 9.5 82 209-292 84-166 (311)
303 PRK12726 flagellar biosynthesi 96.3 0.035 7.6E-07 53.4 10.3 90 210-302 205-296 (407)
304 cd01122 GP4d_helicase GP4d_hel 96.3 0.049 1.1E-06 50.7 11.4 52 212-267 31-82 (271)
305 PRK08233 hypothetical protein; 96.3 0.0034 7.4E-08 54.5 3.3 24 212-235 4-27 (182)
306 PRK10733 hflB ATP-dependent me 96.3 0.039 8.5E-07 57.9 11.7 129 212-361 186-335 (644)
307 PRK12723 flagellar biosynthesi 96.3 0.031 6.6E-07 54.5 10.1 90 211-303 174-266 (388)
308 PRK08927 fliI flagellum-specif 96.3 0.026 5.6E-07 55.6 9.6 85 212-301 159-258 (442)
309 TIGR00708 cobA cob(I)alamin ad 96.3 0.03 6.5E-07 47.8 8.8 117 212-332 6-141 (173)
310 PRK13538 cytochrome c biogenes 96.3 0.022 4.7E-07 50.6 8.4 23 212-234 28-50 (204)
311 cd03265 ABC_DrrA DrrA is the A 96.3 0.034 7.4E-07 50.0 9.8 23 212-234 27-49 (220)
312 PRK12678 transcription termina 96.3 0.0076 1.6E-07 60.5 5.8 88 212-301 417-513 (672)
313 cd01135 V_A-ATPase_B V/A-type 96.3 0.019 4.2E-07 52.8 8.0 91 212-302 70-177 (276)
314 PRK00409 recombination and DNA 96.3 0.0042 9.1E-08 66.2 4.4 179 211-412 327-524 (782)
315 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.042 9.1E-07 50.1 10.4 88 209-302 19-137 (237)
316 PRK05917 DNA polymerase III su 96.3 0.13 2.9E-06 47.9 13.6 42 290-331 94-135 (290)
317 cd03233 ABC_PDR_domain1 The pl 96.3 0.047 1E-06 48.4 10.4 24 212-235 34-57 (202)
318 cd03254 ABCC_Glucan_exporter_l 96.3 0.051 1.1E-06 49.1 10.9 24 212-235 30-53 (229)
319 TIGR00235 udk uridine kinase. 96.2 0.0041 8.8E-08 55.5 3.6 26 209-234 4-29 (207)
320 cd03244 ABCC_MRP_domain2 Domai 96.2 0.073 1.6E-06 47.8 11.9 23 212-234 31-53 (221)
321 cd02019 NK Nucleoside/nucleoti 96.2 0.0033 7.1E-08 45.1 2.4 23 213-235 1-23 (69)
322 cd03217 ABC_FeS_Assembly ABC-t 96.2 0.019 4.1E-07 50.8 7.9 23 212-234 27-49 (200)
323 cd03231 ABC_CcmA_heme_exporter 96.2 0.045 9.7E-07 48.5 10.2 23 212-234 27-49 (201)
324 COG1120 FepC ABC-type cobalami 96.2 0.035 7.6E-07 50.6 9.5 59 280-338 145-206 (258)
325 PRK08149 ATP synthase SpaL; Va 96.2 0.02 4.4E-07 56.2 8.5 86 212-302 152-252 (428)
326 PTZ00301 uridine kinase; Provi 96.2 0.0038 8.2E-08 55.5 3.2 25 211-235 3-27 (210)
327 cd03251 ABCC_MsbA MsbA is an e 96.2 0.055 1.2E-06 49.2 11.0 23 212-234 29-51 (234)
328 PRK05480 uridine/cytidine kina 96.2 0.0044 9.6E-08 55.3 3.7 26 210-235 5-30 (209)
329 PRK00771 signal recognition pa 96.2 0.029 6.2E-07 55.6 9.4 26 211-236 95-120 (437)
330 PRK13949 shikimate kinase; Pro 96.2 0.055 1.2E-06 46.4 10.2 23 213-235 3-25 (169)
331 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.03 6.4E-07 51.4 9.0 24 212-235 26-49 (246)
332 TIGR00554 panK_bact pantothena 96.2 0.026 5.7E-07 52.7 8.7 26 209-234 60-85 (290)
333 TIGR00959 ffh signal recogniti 96.2 0.038 8.2E-07 54.6 10.1 25 210-234 98-122 (428)
334 PRK08533 flagellar accessory p 96.2 0.037 8E-07 50.1 9.4 48 211-263 24-71 (230)
335 cd03232 ABC_PDR_domain2 The pl 96.2 0.029 6.3E-07 49.3 8.6 23 212-234 34-56 (192)
336 TIGR00390 hslU ATP-dependent p 96.2 0.014 3E-07 56.8 6.8 54 183-236 11-72 (441)
337 TIGR03498 FliI_clade3 flagella 96.1 0.022 4.8E-07 55.9 8.4 87 212-302 141-241 (418)
338 cd01136 ATPase_flagellum-secre 96.1 0.039 8.5E-07 52.3 9.8 85 212-301 70-169 (326)
339 cd03266 ABC_NatA_sodium_export 96.1 0.038 8.2E-07 49.6 9.4 23 212-234 32-54 (218)
340 PF03969 AFG1_ATPase: AFG1-lik 96.1 0.029 6.3E-07 54.2 9.1 106 209-329 60-166 (362)
341 PRK06762 hypothetical protein; 96.1 0.0045 9.8E-08 53.0 3.2 24 212-235 3-26 (166)
342 PRK14527 adenylate kinase; Pro 96.1 0.0096 2.1E-07 52.3 5.3 26 211-236 6-31 (191)
343 cd03252 ABCC_Hemolysin The ABC 96.1 0.087 1.9E-06 47.9 11.8 23 212-234 29-51 (237)
344 cd01125 repA Hexameric Replica 96.1 0.045 9.8E-07 49.9 9.9 22 213-234 3-24 (239)
345 TIGR01188 drrA daunorubicin re 96.1 0.045 9.7E-07 51.9 10.2 23 212-234 20-42 (302)
346 KOG0743 AAA+-type ATPase [Post 96.1 0.16 3.4E-06 49.5 13.7 152 212-399 236-414 (457)
347 PRK09544 znuC high-affinity zi 96.1 0.042 9.2E-07 50.5 9.7 24 212-235 31-54 (251)
348 PRK00279 adk adenylate kinase; 96.1 0.013 2.7E-07 52.6 6.1 23 213-235 2-24 (215)
349 PRK05201 hslU ATP-dependent pr 96.1 0.015 3.2E-07 56.7 6.7 53 183-235 14-74 (443)
350 PRK07594 type III secretion sy 96.1 0.025 5.5E-07 55.6 8.5 85 212-301 156-255 (433)
351 COG2274 SunT ABC-type bacterio 96.1 0.05 1.1E-06 57.3 11.2 23 212-234 500-522 (709)
352 TIGR01277 thiQ thiamine ABC tr 96.1 0.044 9.5E-07 49.0 9.6 24 212-235 25-48 (213)
353 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.053 1.2E-06 49.1 10.2 114 210-329 19-164 (229)
354 COG0468 RecA RecA/RadA recombi 96.1 0.039 8.4E-07 51.1 9.2 90 209-302 58-152 (279)
355 PRK06547 hypothetical protein; 96.1 0.0096 2.1E-07 51.2 4.9 27 209-235 13-39 (172)
356 cd03213 ABCG_EPDR ABCG transpo 96.1 0.04 8.6E-07 48.5 9.0 115 212-332 36-172 (194)
357 TIGR01360 aden_kin_iso1 adenyl 96.1 0.005 1.1E-07 53.8 3.2 24 211-234 3-26 (188)
358 TIGR03771 anch_rpt_ABC anchore 96.1 0.072 1.5E-06 48.0 10.8 23 212-234 7-29 (223)
359 cd03283 ABC_MutS-like MutS-lik 96.1 0.0099 2.1E-07 52.6 5.0 23 212-234 26-48 (199)
360 PRK11247 ssuB aliphatic sulfon 96.1 0.067 1.5E-06 49.4 10.7 23 212-234 39-61 (257)
361 PRK14269 phosphate ABC transpo 96.0 0.078 1.7E-06 48.6 11.2 23 212-234 29-51 (246)
362 COG5635 Predicted NTPase (NACH 96.0 0.012 2.6E-07 63.6 6.6 185 211-399 222-427 (824)
363 KOG0728 26S proteasome regulat 96.0 0.065 1.4E-06 47.9 9.8 154 186-360 148-330 (404)
364 cd03267 ABC_NatA_like Similar 96.0 0.044 9.6E-07 49.9 9.4 23 212-234 48-70 (236)
365 PRK13650 cbiO cobalt transport 96.0 0.036 7.8E-07 51.9 9.0 53 283-335 150-205 (279)
366 TIGR03740 galliderm_ABC gallid 96.0 0.047 1E-06 49.2 9.5 23 212-234 27-49 (223)
367 PRK10820 DNA-binding transcrip 96.0 0.019 4.1E-07 58.7 7.6 133 185-331 205-349 (520)
368 PF08298 AAA_PrkA: PrkA AAA do 96.0 0.0098 2.1E-07 56.3 5.0 53 182-234 59-111 (358)
369 PRK10867 signal recognition pa 96.0 0.035 7.6E-07 54.9 9.1 24 211-234 100-123 (433)
370 KOG0739 AAA+-type ATPase [Post 96.0 0.3 6.4E-06 45.0 14.0 96 185-302 134-236 (439)
371 PRK06936 type III secretion sy 96.0 0.028 6E-07 55.4 8.2 85 212-301 163-262 (439)
372 PRK09099 type III secretion sy 96.0 0.031 6.7E-07 55.3 8.6 86 212-301 164-263 (441)
373 cd03250 ABCC_MRP_domain1 Domai 96.0 0.093 2E-06 46.5 11.1 24 212-235 32-55 (204)
374 PRK13948 shikimate kinase; Pro 96.0 0.093 2E-06 45.5 10.7 25 211-235 10-34 (182)
375 PF00406 ADK: Adenylate kinase 96.0 0.017 3.6E-07 48.6 5.8 20 216-235 1-20 (151)
376 cd02027 APSK Adenosine 5'-phos 96.0 0.021 4.5E-07 47.9 6.3 23 213-235 1-23 (149)
377 PRK13647 cbiO cobalt transport 95.9 0.062 1.3E-06 50.1 10.1 23 212-234 32-54 (274)
378 KOG3347 Predicted nucleotide k 95.9 0.011 2.4E-07 48.3 4.3 69 212-291 8-76 (176)
379 PRK13537 nodulation ABC transp 95.9 0.072 1.6E-06 50.6 10.5 23 212-234 34-56 (306)
380 COG4133 CcmA ABC-type transpor 95.9 0.085 1.9E-06 45.2 9.7 52 281-332 138-191 (209)
381 PF00154 RecA: recA bacterial 95.9 0.024 5.3E-07 53.5 7.1 85 210-302 52-142 (322)
382 TIGR03496 FliI_clade1 flagella 95.9 0.043 9.3E-07 53.9 9.0 85 212-301 138-237 (411)
383 cd03253 ABCC_ATM1_transporter 95.9 0.071 1.5E-06 48.5 10.1 54 283-336 147-201 (236)
384 PRK05922 type III secretion sy 95.9 0.039 8.4E-07 54.3 8.6 86 212-302 158-258 (434)
385 cd01428 ADK Adenylate kinase ( 95.9 0.033 7.1E-07 48.9 7.6 22 214-235 2-23 (194)
386 PRK14974 cell division protein 95.9 0.069 1.5E-06 51.1 10.0 26 210-235 139-164 (336)
387 cd03300 ABC_PotA_N PotA is an 95.9 0.06 1.3E-06 48.9 9.4 24 212-235 27-50 (232)
388 PF00910 RNA_helicase: RNA hel 95.8 0.0053 1.1E-07 48.3 2.1 22 214-235 1-22 (107)
389 TIGR01351 adk adenylate kinase 95.8 0.024 5.2E-07 50.6 6.6 22 214-235 2-23 (210)
390 PRK12597 F0F1 ATP synthase sub 95.8 0.026 5.6E-07 56.1 7.4 87 212-300 144-246 (461)
391 cd00544 CobU Adenosylcobinamid 95.8 0.027 5.8E-07 48.3 6.5 79 214-300 2-82 (169)
392 PRK11160 cysteine/glutathione 95.8 0.083 1.8E-06 55.0 11.4 23 212-234 367-389 (574)
393 PF03308 ArgK: ArgK protein; 95.8 0.021 4.6E-07 51.6 6.0 66 192-262 14-79 (266)
394 TIGR01818 ntrC nitrogen regula 95.8 0.14 3E-06 51.8 12.8 134 185-331 135-279 (463)
395 TIGR03411 urea_trans_UrtD urea 95.8 0.094 2E-06 47.9 10.6 23 212-234 29-51 (242)
396 cd01132 F1_ATPase_alpha F1 ATP 95.8 0.057 1.2E-06 49.7 8.9 95 212-312 70-181 (274)
397 PTZ00185 ATPase alpha subunit; 95.8 0.061 1.3E-06 53.6 9.5 90 212-302 190-300 (574)
398 PF01583 APS_kinase: Adenylyls 95.8 0.0087 1.9E-07 50.2 3.3 25 212-236 3-27 (156)
399 cd03240 ABC_Rad50 The catalyti 95.8 0.077 1.7E-06 47.1 9.6 52 284-335 132-187 (204)
400 PRK00131 aroK shikimate kinase 95.8 0.0076 1.7E-07 51.9 3.1 25 211-235 4-28 (175)
401 TIGR02868 CydC thiol reductant 95.8 0.074 1.6E-06 54.8 10.8 24 212-235 362-385 (529)
402 PRK09280 F0F1 ATP synthase sub 95.8 0.048 1E-06 54.0 8.9 88 212-301 145-248 (463)
403 PRK04040 adenylate kinase; Pro 95.8 0.008 1.7E-07 52.6 3.2 24 212-235 3-26 (188)
404 TIGR03497 FliI_clade2 flagella 95.8 0.043 9.3E-07 54.0 8.6 85 212-301 138-237 (413)
405 TIGR00968 3a0106s01 sulfate AB 95.8 0.063 1.4E-06 48.9 9.2 23 212-234 27-49 (237)
406 PRK05986 cob(I)alamin adenolsy 95.7 0.037 8E-07 48.0 7.1 118 212-332 23-159 (191)
407 PF13481 AAA_25: AAA domain; P 95.7 0.066 1.4E-06 46.9 9.0 42 212-253 33-81 (193)
408 TIGR02314 ABC_MetN D-methionin 95.7 0.061 1.3E-06 51.8 9.3 23 212-234 32-54 (343)
409 PF12061 DUF3542: Protein of u 95.7 0.039 8.4E-07 50.7 7.4 54 37-90 319-373 (402)
410 PRK14721 flhF flagellar biosyn 95.7 0.063 1.4E-06 52.8 9.5 24 211-234 191-214 (420)
411 COG4088 Predicted nucleotide k 95.7 0.0084 1.8E-07 51.9 3.0 25 212-236 2-26 (261)
412 PRK05688 fliI flagellum-specif 95.7 0.066 1.4E-06 53.0 9.6 86 212-302 169-269 (451)
413 PRK07721 fliI flagellum-specif 95.7 0.045 9.8E-07 54.3 8.5 87 212-302 159-259 (438)
414 cd01121 Sms Sms (bacterial rad 95.7 0.088 1.9E-06 51.2 10.4 83 211-302 82-169 (372)
415 COG0194 Gmk Guanylate kinase [ 95.7 0.013 2.8E-07 50.1 4.0 24 212-235 5-28 (191)
416 COG1131 CcmA ABC-type multidru 95.7 0.11 2.4E-06 48.9 10.8 24 212-235 32-55 (293)
417 PRK13545 tagH teichoic acids e 95.7 0.11 2.4E-06 52.4 11.2 24 212-235 51-74 (549)
418 TIGR02322 phosphon_PhnN phosph 95.7 0.0085 1.8E-07 52.0 3.1 24 212-235 2-25 (179)
419 PRK06731 flhF flagellar biosyn 95.7 0.068 1.5E-06 49.4 9.0 89 212-303 76-166 (270)
420 PF06309 Torsin: Torsin; Inte 95.7 0.019 4.1E-07 46.0 4.6 50 185-234 26-76 (127)
421 TIGR02857 CydD thiol reductant 95.6 0.14 3E-06 52.8 12.2 23 212-234 349-371 (529)
422 smart00534 MUTSac ATPase domai 95.6 0.0039 8.5E-08 54.5 0.7 21 213-233 1-21 (185)
423 PRK06793 fliI flagellum-specif 95.6 0.052 1.1E-06 53.5 8.5 119 212-336 157-291 (432)
424 PHA00729 NTP-binding motif con 95.6 0.016 3.5E-07 51.7 4.6 25 211-235 17-41 (226)
425 cd01134 V_A-ATPase_A V/A-type 95.6 0.078 1.7E-06 50.4 9.3 84 212-300 158-263 (369)
426 PRK13657 cyclic beta-1,2-gluca 95.6 0.12 2.6E-06 54.0 11.8 23 212-234 362-384 (588)
427 PRK14249 phosphate ABC transpo 95.6 0.14 3.1E-06 47.0 11.1 23 212-234 31-53 (251)
428 PF08433 KTI12: Chromatin asso 95.6 0.04 8.8E-07 51.0 7.4 25 212-236 2-26 (270)
429 cd00227 CPT Chloramphenicol (C 95.6 0.0089 1.9E-07 51.7 2.9 23 212-234 3-25 (175)
430 COG1428 Deoxynucleoside kinase 95.6 0.0087 1.9E-07 52.1 2.8 26 211-236 4-29 (216)
431 PF06745 KaiC: KaiC; InterPro 95.6 0.018 3.9E-07 52.0 5.1 87 210-301 18-125 (226)
432 cd03243 ABC_MutS_homologs The 95.6 0.015 3.2E-07 51.6 4.3 22 212-233 30-51 (202)
433 PRK13546 teichoic acids export 95.6 0.099 2.2E-06 48.4 10.0 24 212-235 51-74 (264)
434 PRK04328 hypothetical protein; 95.6 0.07 1.5E-06 49.0 8.9 41 210-253 22-62 (249)
435 TIGR00150 HI0065_YjeE ATPase, 95.6 0.02 4.3E-07 46.7 4.7 25 212-236 23-47 (133)
436 cd02021 GntK Gluconate kinase 95.6 0.008 1.7E-07 50.4 2.5 22 213-234 1-22 (150)
437 cd02023 UMPK Uridine monophosp 95.6 0.0078 1.7E-07 53.2 2.5 22 213-234 1-22 (198)
438 TIGR03375 type_I_sec_LssB type 95.6 0.12 2.5E-06 55.2 11.8 24 212-235 492-515 (694)
439 PF03193 DUF258: Protein of un 95.6 0.021 4.6E-07 48.2 4.8 36 191-235 24-59 (161)
440 cd03285 ABC_MSH2_euk MutS2 hom 95.6 0.0096 2.1E-07 53.6 3.0 22 211-232 30-51 (222)
441 PRK02496 adk adenylate kinase; 95.6 0.044 9.5E-07 47.7 7.1 23 213-235 3-25 (184)
442 TIGR03305 alt_F1F0_F1_bet alte 95.6 0.034 7.3E-07 54.9 6.9 89 212-302 139-243 (449)
443 PF03205 MobB: Molybdopterin g 95.6 0.02 4.3E-07 47.4 4.6 39 212-252 1-39 (140)
444 TIGR03263 guanyl_kin guanylate 95.6 0.0099 2.2E-07 51.6 3.0 23 212-234 2-24 (180)
445 PRK06820 type III secretion sy 95.6 0.055 1.2E-06 53.4 8.3 86 212-302 164-264 (440)
446 PRK11153 metN DL-methionine tr 95.5 0.087 1.9E-06 50.9 9.7 23 212-234 32-54 (343)
447 PRK14723 flhF flagellar biosyn 95.5 0.12 2.6E-06 54.5 11.1 25 211-235 185-209 (767)
448 KOG0738 AAA+-type ATPase [Post 95.5 0.058 1.3E-06 51.3 8.0 26 211-236 245-270 (491)
449 PRK11388 DNA-binding transcrip 95.5 0.045 9.8E-07 57.7 8.3 131 185-331 326-467 (638)
450 TIGR00041 DTMP_kinase thymidyl 95.5 0.078 1.7E-06 46.6 8.6 26 212-237 4-29 (195)
451 PRK00889 adenylylsulfate kinas 95.5 0.013 2.8E-07 50.6 3.5 25 211-235 4-28 (175)
452 PRK13536 nodulation factor exp 95.5 0.13 2.9E-06 49.5 10.7 23 212-234 68-90 (340)
453 PF07726 AAA_3: ATPase family 95.5 0.014 3.1E-07 46.8 3.4 21 214-234 2-22 (131)
454 TIGR01288 nodI ATP-binding ABC 95.5 0.11 2.5E-06 49.2 10.2 23 212-234 31-53 (303)
455 PHA02774 E1; Provisional 95.5 0.053 1.1E-06 54.8 8.1 48 193-250 421-468 (613)
456 cd02020 CMPK Cytidine monophos 95.5 0.0089 1.9E-07 49.8 2.4 23 213-235 1-23 (147)
457 PF10236 DAP3: Mitochondrial r 95.5 0.35 7.6E-06 45.9 13.4 49 342-391 258-306 (309)
458 cd03289 ABCC_CFTR2 The CFTR su 95.5 0.13 2.8E-06 47.9 10.3 24 212-235 31-54 (275)
459 PRK11432 fbpC ferric transport 95.5 0.086 1.9E-06 51.0 9.4 23 212-234 33-55 (351)
460 PRK11650 ugpC glycerol-3-phosp 95.5 0.091 2E-06 51.0 9.5 23 212-234 31-53 (356)
461 cd03287 ABC_MSH3_euk MutS3 hom 95.4 0.21 4.5E-06 44.9 11.1 111 212-337 32-160 (222)
462 PRK06995 flhF flagellar biosyn 95.4 0.11 2.3E-06 52.1 10.0 25 212-236 257-281 (484)
463 cd02024 NRK1 Nicotinamide ribo 95.4 0.0099 2.1E-07 51.8 2.5 23 213-235 1-23 (187)
464 PRK08472 fliI flagellum-specif 95.4 0.074 1.6E-06 52.5 8.8 86 212-302 158-257 (434)
465 PRK11000 maltose/maltodextrin 95.4 0.081 1.8E-06 51.6 9.1 23 212-234 30-52 (369)
466 KOG0735 AAA+-type ATPase [Post 95.4 0.36 7.9E-06 49.7 13.6 180 185-390 668-872 (952)
467 PRK13409 putative ATPase RIL; 95.4 0.087 1.9E-06 54.7 9.8 124 212-336 366-519 (590)
468 TIGR01425 SRP54_euk signal rec 95.4 0.18 4E-06 49.7 11.4 24 211-234 100-123 (429)
469 PRK11174 cysteine/glutathione 95.4 0.15 3.2E-06 53.3 11.6 24 212-235 377-400 (588)
470 TIGR03878 thermo_KaiC_2 KaiC d 95.4 0.12 2.6E-06 47.7 9.7 41 209-252 34-74 (259)
471 COG1936 Predicted nucleotide k 95.4 0.011 2.5E-07 49.7 2.6 20 213-232 2-21 (180)
472 TIGR03258 PhnT 2-aminoethylpho 95.4 0.11 2.4E-06 50.5 9.8 23 212-234 32-54 (362)
473 TIGR00064 ftsY signal recognit 95.4 0.12 2.6E-06 48.0 9.7 26 210-235 71-96 (272)
474 PRK09519 recA DNA recombinatio 95.4 0.086 1.9E-06 55.7 9.5 85 209-301 58-148 (790)
475 PRK11176 lipid transporter ATP 95.4 0.089 1.9E-06 54.9 9.8 23 212-234 370-392 (582)
476 PRK09452 potA putrescine/sperm 95.4 0.1 2.2E-06 51.0 9.5 23 212-234 41-63 (375)
477 PRK15424 propionate catabolism 95.4 0.047 1E-06 55.6 7.4 46 185-234 220-265 (538)
478 PF08477 Miro: Miro-like prote 95.4 0.014 3.1E-07 46.6 3.0 23 214-236 2-24 (119)
479 PRK13635 cbiO cobalt transport 95.4 0.098 2.1E-06 49.0 9.1 23 212-234 34-56 (279)
480 PF13479 AAA_24: AAA domain 95.4 0.052 1.1E-06 48.6 6.9 20 212-231 4-23 (213)
481 PRK14528 adenylate kinase; Pro 95.3 0.03 6.4E-07 49.0 5.2 24 212-235 2-25 (186)
482 cd02028 UMPK_like Uridine mono 95.3 0.012 2.5E-07 51.2 2.6 23 213-235 1-23 (179)
483 TIGR01193 bacteriocin_ABC ABC- 95.3 0.14 3.1E-06 54.7 11.4 23 212-234 501-523 (708)
484 PRK05800 cobU adenosylcobinami 95.3 0.07 1.5E-06 45.8 7.3 23 212-234 2-24 (170)
485 TIGR03575 selen_PSTK_euk L-ser 95.3 0.057 1.2E-06 51.6 7.4 23 214-236 2-24 (340)
486 PRK03846 adenylylsulfate kinas 95.3 0.017 3.7E-07 51.0 3.7 27 209-235 22-48 (198)
487 cd03284 ABC_MutS1 MutS1 homolo 95.3 0.018 4E-07 51.6 3.9 21 212-232 31-51 (216)
488 PRK13947 shikimate kinase; Pro 95.3 0.013 2.8E-07 50.4 2.8 23 213-235 3-25 (171)
489 PRK00300 gmk guanylate kinase; 95.3 0.015 3.2E-07 51.7 3.2 24 212-235 6-29 (205)
490 PRK14738 gmk guanylate kinase; 95.3 0.017 3.7E-07 51.4 3.6 26 209-234 11-36 (206)
491 PRK07196 fliI flagellum-specif 95.3 0.069 1.5E-06 52.6 8.1 86 212-302 156-256 (434)
492 COG1117 PstB ABC-type phosphat 95.3 0.11 2.4E-06 45.5 8.3 24 210-233 32-55 (253)
493 COG0529 CysC Adenylylsulfate k 95.3 0.04 8.6E-07 46.6 5.4 28 210-237 22-49 (197)
494 PRK10751 molybdopterin-guanine 95.3 0.017 3.7E-07 49.4 3.4 27 210-236 5-31 (173)
495 COG0467 RAD55 RecA-superfamily 95.3 0.041 9E-07 50.9 6.3 87 209-301 21-134 (260)
496 TIGR02203 MsbA_lipidA lipid A 95.3 0.14 3.1E-06 53.2 10.9 23 212-234 359-381 (571)
497 cd00071 GMPK Guanosine monopho 95.3 0.013 2.8E-07 48.4 2.6 22 213-234 1-22 (137)
498 COG2842 Uncharacterized ATPase 95.3 0.46 9.9E-06 43.9 12.6 97 212-317 95-191 (297)
499 TIGR01192 chvA glucan exporter 95.3 0.2 4.3E-06 52.3 11.9 23 212-234 362-384 (585)
500 PRK15439 autoinducer 2 ABC tra 95.3 0.16 3.5E-06 52.0 11.0 23 212-234 38-60 (510)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-54 Score=450.07 Aligned_cols=385 Identities=30% Similarity=0.486 Sum_probs=307.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccCCCCcccccccc
Q 047559 35 GGVASELKKWEDCLMMIQAVLRDAEEKQLTDEAVKLWLDDLRDLAYDAEDILDEFATKALDRKFIADRDHGASSSKVQML 114 (444)
Q Consensus 35 ~gv~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (444)
.|+++.+..|+++|..++++++|+++++.....+..|.+.+++++|++||.++.|..+....+... ... ......+.
T Consensus 24 ~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~--~l~-~~~~~~~~ 100 (889)
T KOG4658|consen 24 DGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND--LLS-TRSVERQR 100 (889)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--Hhh-hhHHHHHH
Confidence 368889999999999999999999999988899999999999999999999999998877654322 000 00011111
Q ss_pred ccCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhhhcCCcccCCCCCCccccccCCCCCCCCcCCcccccchhHH
Q 047559 115 VPAPCFGCFKIQNTVNFNGKMRSSIKDITGRFDQLCNQRIHLGLQLTPGGTSSTTTAQRRTPTSSVSTERAVFGRQQDKA 194 (444)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~ 194 (444)
.. ...+.++....+..+.+++-.+......++.............+....+..+...... ||.+..++
T Consensus 101 ~c-----------~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~ 168 (889)
T KOG4658|consen 101 LC-----------LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLE 168 (889)
T ss_pred Hh-----------hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHH
Confidence 11 0134455666666666666666666666654332111110001111122333333444 99999999
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccc-cccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCC
Q 047559 195 KMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRA-VEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCD 273 (444)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 273 (444)
.+.+.|..++. .+++|+||||+||||||++++|+.. ++. +|+.++||+||++++...+..+|+..++.....
T Consensus 169 kl~~~L~~d~~------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~-~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~ 241 (889)
T KOG4658|consen 169 KLWNRLMEDDV------GIVGIYGMGGVGKTTLARQIFNKFDEVGN-HFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE 241 (889)
T ss_pred HHHHHhccCCC------CEEEEECCCcccHHHHHHHHhcccchhcc-cCceEEEEEEcccccHHhHHHHHHHHhccCCcc
Confidence 99999987643 7999999999999999999999998 777 999999999999999999999999998874442
Q ss_pred --cccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHhh-cCCCCcccCCCCCh
Q 047559 274 --LKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAAT-MEPIQQYNLQCLSD 350 (444)
Q Consensus 274 --~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~-~~~~~~~~l~~L~~ 350 (444)
..+..+++..|.++|++|||||||||||+. .+|+.+..++|...+||+|++|||+..|+.. +++...++++.|++
T Consensus 242 ~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 242 WEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred cchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 333478899999999999999999999997 5799999999999999999999999999988 77778899999999
Q ss_pred HhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCC-CHHHHHHHHhcccCC----CCC-ccChH
Q 047559 351 EDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSK-RHDEWDEILNSNILD----LPQ-QNGIL 424 (444)
Q Consensus 351 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~-~~~~w~~~l~~~~~~----~~~-~~~i~ 424 (444)
+|||+||.+.+|.... ...+.++.+|++|+++|+|+|||++++|+.|+.+ +..+|+++++...+. .++ .+.++
T Consensus 320 ~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred cccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 9999999999976532 2334489999999999999999999999999999 889999999876554 222 46799
Q ss_pred HHHHHhhcCCchhhhcccCC
Q 047559 425 SVLRLSYHYLPSQLKRCFAY 444 (444)
Q Consensus 425 ~~l~~sy~~Lp~~lk~cflY 444 (444)
++|.+||++||+++|.||+|
T Consensus 399 ~iLklSyd~L~~~lK~CFLy 418 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLY 418 (889)
T ss_pred HhhhccHhhhhHHHHHHHHh
Confidence 99999999999999999998
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4e-41 Score=317.76 Aligned_cols=248 Identities=36% Similarity=0.603 Sum_probs=197.5
Q ss_pred cchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047559 189 RQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESIT 268 (444)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~ 268 (444)
|+.++++|.+.|.... .+.++|+|+||||+||||||..++++...+. +|+.++|++++...+..+++..|+.++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccc-cccccccccccccccccccccccccccc
Confidence 7889999999998744 4569999999999999999999999877777 9999999999999999999999999998
Q ss_pred cCCC---CcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHhhcCC-CCccc
Q 047559 269 FASC---DLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAATMEP-IQQYN 344 (444)
Q Consensus 269 ~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~~~~-~~~~~ 344 (444)
.... ...+.......+.+.|.++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 7643 4567778999999999999999999999876 5888888887777789999999999988766544 57899
Q ss_pred CCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCC-CHHHHHHHHhcccCCCC---C-
Q 047559 345 LQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSK-RHDEWDEILNSNILDLP---Q- 419 (444)
Q Consensus 345 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~-~~~~w~~~l~~~~~~~~---~- 419 (444)
+++|+++++++||.+.++... ....+.++.++++|+++|+|+||||+++|++|+.+ +..+|..++++...... +
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999986544 22334456678899999999999999999999776 78889998876433322 1
Q ss_pred ccChHHHHHHhhcCCchhhhcccCC
Q 047559 420 QNGILSVLRLSYHYLPSQLKRCFAY 444 (444)
Q Consensus 420 ~~~i~~~l~~sy~~Lp~~lk~cflY 444 (444)
...+..++.+||+.||+++|.||+|
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~ 257 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLY 257 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHH
T ss_pred cccccccceechhcCCccHHHHHhh
Confidence 4679999999999999999999976
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.6e-33 Score=305.02 Aligned_cols=246 Identities=23% Similarity=0.342 Sum_probs=194.0
Q ss_pred cCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEe---CCC-----
Q 047559 182 TERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCV---SDD----- 253 (444)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~----- 253 (444)
..+.+||++..++++..+|.... .++++|+|+||||+||||||+.+|+. +.. +|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~-~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSR--LSR-QFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHH--Hhh-cCCeEEEeeccccccchhhcc
Confidence 45579999999999998875432 56799999999999999999999987 445 7888888742 111
Q ss_pred ------CC-HHHHHHHHHHHhccCCC-CcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEE
Q 047559 254 ------FD-VLNISRALLESITFASC-DLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKII 325 (444)
Q Consensus 254 ------~~-~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 325 (444)
++ ...+...++..+..... .... ...+++.+.++|+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 12334445554433211 1111 14567788999999999999875 57888877666667899999
Q ss_pred EecCChHHHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHH
Q 047559 326 VTTRHAHVAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSKRHDE 405 (444)
Q Consensus 326 vTTr~~~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~ 405 (444)
||||+..++..++..++|+++.|++++||+||+.+||....+ ++.+.+++++|+++|+|+|||++++|++|+.++..+
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~ 406 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHH
Confidence 999999999877777899999999999999999999975432 356888999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCccChHHHHHHhhcCCch-hhhcccCC
Q 047559 406 WDEILNSNILDLPQQNGILSVLRLSYHYLPS-QLKRCFAY 444 (444)
Q Consensus 406 w~~~l~~~~~~~~~~~~i~~~l~~sy~~Lp~-~lk~cflY 444 (444)
|..++++..... +..|..+|++||++|++ ..|.||+|
T Consensus 407 W~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ 444 (1153)
T PLN03210 407 WMDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRH 444 (1153)
T ss_pred HHHHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhhe
Confidence 999998754322 35799999999999987 49999986
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.48 E-value=6.8e-12 Score=123.86 Aligned_cols=227 Identities=13% Similarity=0.122 Sum_probs=141.9
Q ss_pred cCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHH
Q 047559 182 TERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 261 (444)
.++.++||++++++|...|...-.+ .....+.|+|++|+|||++++.++++..... ..-..+++++....+...++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCHHHHHH
Confidence 4567999999999999988543211 2234578999999999999999998754332 234567777777778888999
Q ss_pred HHHHHhccC-CC-CcccHHHHHHHHHHHhC--CceEEEEEeCCCCCC----hhcHHHhhcccCCCCCC--cEEEEecCCh
Q 047559 262 ALLESITFA-SC-DLKALNEVQVQIKRAVD--GKKLLLVLDDVWNED----YCLWEDLKAPFLAAAPN--SKIIVTTRHA 331 (444)
Q Consensus 262 ~il~~l~~~-~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~g--s~iivTTr~~ 331 (444)
.++.++... .+ ...+..++...+.+.+. +++.+||||+++... ...+..+...+.. ..+ ..+|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 999998752 21 22345666677777764 457899999997642 1223333332222 223 3356666554
Q ss_pred HHHhhcC-------CCCcccCCCCChHhHHHHHHHhhccC--CCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh----
Q 047559 332 HVAATME-------PIQQYNLQCLSDEDCWSLFMMHAFVG--QDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL---- 398 (444)
Q Consensus 332 ~va~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L---- 398 (444)
.+..... ....+.+.+++.++..+++..++-.. .....+..++.+++......|..+.|+..+-...
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4332221 12457899999999999998876322 1223344455555544444566777777664322
Q ss_pred -cC--C-CHHHHHHHHhc
Q 047559 399 -RS--K-RHDEWDEILNS 412 (444)
Q Consensus 399 -~~--~-~~~~w~~~l~~ 412 (444)
+. . +.+....+++.
T Consensus 264 ~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEK 281 (394)
T ss_pred HcCCCCcCHHHHHHHHHH
Confidence 11 1 55666665554
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.46 E-value=3e-11 Score=112.77 Aligned_cols=181 Identities=22% Similarity=0.228 Sum_probs=116.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHH----HH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIK----RA 287 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~----~~ 287 (444)
..+.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..+...++..... .+...+...+. ..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQE--RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCC--Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 589999999999999999999875321 11 22233 333457778888898888654332 22222223333 32
Q ss_pred -hCCceEEEEEeCCCCCChhcHHHhhcccC---CCCCCcEEEEecCChHHHhhcC----------CCCcccCCCCChHhH
Q 047559 288 -VDGKKLLLVLDDVWNEDYCLWEDLKAPFL---AAAPNSKIIVTTRHAHVAATME----------PIQQYNLQCLSDEDC 353 (444)
Q Consensus 288 -l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~iivTTr~~~va~~~~----------~~~~~~l~~L~~~~~ 353 (444)
..+++++||+||+|..+...++.+..... .......|++|.... ....+. ....+.+.+++.++.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 26788999999999877666776653221 112233556666543 222211 123578999999999
Q ss_pred HHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 354 WSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 354 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
.+++...+..........-..+..+.|++.|+|.|..+..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764322111112334567889999999999999998876
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.39 E-value=3.1e-12 Score=116.67 Aligned_cols=195 Identities=18% Similarity=0.231 Sum_probs=102.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH--
Q 047559 186 VFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL-- 263 (444)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i-- 263 (444)
|+||+.|++.|.+++..+. ...+.|+|+.|+|||+|++.+.+..... .+ ..+|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~~~~--~~-~~~y~~~~~~~~~~-~~~~~~~ 70 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINELKEK--GY-KVVYIDFLEESNES-SLRSFIE 70 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHhhhc--CC-cEEEEecccchhhh-HHHHHHH
Confidence 7899999999999887532 2689999999999999999999875221 12 34455444433222 12222
Q ss_pred --------HHHhccCCC----------CcccHHHHHHHHHHHh--CCceEEEEEeCCCCCC------hhcHHHhhcccCC
Q 047559 264 --------LESITFASC----------DLKALNEVQVQIKRAV--DGKKLLLVLDDVWNED------YCLWEDLKAPFLA 317 (444)
Q Consensus 264 --------l~~l~~~~~----------~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~ 317 (444)
...+....+ ...........+.+.+ .+++++||+||+.... ......+...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 71 ETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 111211111 1112223333333334 3345999999996654 1112233333332
Q ss_pred --CCCCcEEEEecCChHHHhh--------cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC
Q 047559 318 --AAPNSKIIVTTRHAHVAAT--------MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL 387 (444)
Q Consensus 318 --~~~gs~iivTTr~~~va~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (444)
......+|+++....+... .+....+.+++|+.+++++++....-.. ..- +.-+...++|+..+||+
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCC
Confidence 2334445555555544433 1222458999999999999998764322 111 11233347899999999
Q ss_pred hHHHHH
Q 047559 388 PLAAKT 393 (444)
Q Consensus 388 Plai~~ 393 (444)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998864
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=1.4e-10 Score=126.77 Aligned_cols=196 Identities=17% Similarity=0.161 Sum_probs=123.6
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeC-CCCCHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVS-DDFDVLNISR 261 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~ 261 (444)
.+.++-|..-.+.+- .. ...+++.|+|++|.||||++.++... ++.++|+++. .+.++..++.
T Consensus 13 ~~~~~~R~rl~~~l~----~~-----~~~~~~~v~apaG~GKTtl~~~~~~~-------~~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 13 LHNTVVRERLLAKLS----GA-----NNYRLVLVTSPAGYGKTTLISQWAAG-------KNNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred ccccCcchHHHHHHh----cc-----cCCCeEEEECCCCCCHHHHHHHHHHh-------CCCeEEEecCcccCCHHHHHH
Confidence 345667765444442 21 34589999999999999999998753 2368899996 4456677778
Q ss_pred HHHHHhccCCCC-------------cccHHHHHHHHHHHh-C-CceEEEEEeCCCCCChhcHHHhhcccC-CCCCCcEEE
Q 047559 262 ALLESITFASCD-------------LKALNEVQVQIKRAV-D-GKKLLLVLDDVWNEDYCLWEDLKAPFL-AAAPNSKII 325 (444)
Q Consensus 262 ~il~~l~~~~~~-------------~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ii 325 (444)
.++..+...... ..+...+...+...+ . +.+++|||||++..+......+...+. ....+.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 888777422111 012223333333333 2 678999999998765444443333433 345567888
Q ss_pred EecCChHH---HhhcCCCCcccCC----CCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 326 VTTRHAHV---AATMEPIQQYNLQ----CLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 326 vTTr~~~v---a~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
||||.... ....-......+. +|+.+|+.+||...... .. .......|.+.|+|.|+++..++..+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~---~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS---PI----EAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC---CC----CHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99997421 1111111234444 89999999999765311 11 12234679999999999999988776
Q ss_pred cCC
Q 047559 399 RSK 401 (444)
Q Consensus 399 ~~~ 401 (444)
...
T Consensus 230 ~~~ 232 (903)
T PRK04841 230 RQN 232 (903)
T ss_pred hhC
Confidence 544
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.26 E-value=6.7e-10 Score=108.52 Aligned_cols=207 Identities=13% Similarity=0.088 Sum_probs=125.2
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCc---ceeEEEEeCCCCCHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKF---DVKAWVCVSDDFDVLNI 259 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~~ 259 (444)
++.++||+.+++.|...|...-.+ .....+.|+|++|+|||++++.+++......... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 347999999999999998642111 2235789999999999999999998643111011 24578888777778889
Q ss_pred HHHHHHHhc---cCCC-CcccHHHHHHHHHHHh--CCceEEEEEeCCCCCC---hhcHHHhhccc-CCCC--CCcEEEEe
Q 047559 260 SRALLESIT---FASC-DLKALNEVQVQIKRAV--DGKKLLLVLDDVWNED---YCLWEDLKAPF-LAAA--PNSKIIVT 327 (444)
Q Consensus 260 ~~~il~~l~---~~~~-~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iivT 327 (444)
+..|+.++. ...+ ...+..+....+.+.+ .+++++||||+++... ......+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 2211 1223445555566665 3568899999997752 11122222221 1111 23344555
Q ss_pred cCChHHHhhc-----CC--CCcccCCCCChHhHHHHHHHhhccC--CCCCccchHHHHHHHHHHHcCCChHHHH
Q 047559 328 TRHAHVAATM-----EP--IQQYNLQCLSDEDCWSLFMMHAFVG--QDITAQQISDLFREKVVGKCGGLPLAAK 392 (444)
Q Consensus 328 Tr~~~va~~~-----~~--~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plai~ 392 (444)
|........+ .. ...+.+.+++.++..+++..++-.. .....+..++ ....++..+.|.|-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~-~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIP-LCAALAAQEHGDARKAI 244 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHH-HHHHHHHHhcCCHHHHH
Confidence 5444332111 11 1457899999999999999886311 1112222233 33456777788885543
No 9
>PF05729 NACHT: NACHT domain
Probab=99.23 E-value=9.1e-11 Score=100.91 Aligned_cols=143 Identities=24% Similarity=0.319 Sum_probs=89.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCC----cceeEEEEeCCCCCHH---HHHHHHHHHhccCCCCcccHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSK----FDVKAWVCVSDDFDVL---NISRALLESITFASCDLKALNEVQVQI 284 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l 284 (444)
+++.|+|.+|+||||+++.++....... . +...+|++........ .+...+..+...... .... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE-PPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC-cccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HH
Confidence 4799999999999999999987754333 2 4566777766543322 233333333322111 1111 22
Q ss_pred HHHh-CCceEEEEEeCCCCCChh-------cHHHhhcccCC--CCCCcEEEEecCChHH---HhhcCCCCcccCCCCChH
Q 047559 285 KRAV-DGKKLLLVLDDVWNEDYC-------LWEDLKAPFLA--AAPNSKIIVTTRHAHV---AATMEPIQQYNLQCLSDE 351 (444)
Q Consensus 285 ~~~l-~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~--~~~gs~iivTTr~~~v---a~~~~~~~~~~l~~L~~~ 351 (444)
...+ ..++++||||++++.... .+..+...+.. ..+++++|||+|.... .........+.+.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 2222 578999999999775321 12333333333 3568999999998766 333444467999999999
Q ss_pred hHHHHHHHhh
Q 047559 352 DCWSLFMMHA 361 (444)
Q Consensus 352 ~~~~lf~~~~ 361 (444)
+..+++.+..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 10
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.10 E-value=5.3e-10 Score=104.58 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=98.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHH-HHH
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQI-KRA 287 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~ 287 (444)
+.+....+||++|+||||||+.+..... . . |..+|...+-.+-++.+ .+.- +..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~--~-~-----f~~~sAv~~gvkdlr~i-----------------~e~a~~~~ 100 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTN--A-A-----FEALSAVTSGVKDLREI-----------------IEEARKNR 100 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhC--C-c-----eEEeccccccHHHHHHH-----------------HHHHHHHH
Confidence 4567889999999999999999987532 1 2 23333333222222222 2222 223
Q ss_pred hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEE--ecCChHHH---hhcCCCCcccCCCCChHhHHHHHHHhhc
Q 047559 288 VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIV--TTRHAHVA---ATMEPIQQYNLQCLSDEDCWSLFMMHAF 362 (444)
Q Consensus 288 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTr~~~va---~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 362 (444)
..|++.+|++|+|+..+..+.+.+ ||.-.+|.-|+| ||.++... ...+...++.+++|+.++...++.+.+.
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 358999999999988776655544 344567887777 66665432 2234457899999999999999988432
Q ss_pred cC-CCCC--ccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 363 VG-QDIT--AQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 363 ~~-~~~~--~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
.. .... .....+++...++..++|---++-..
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~ 212 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGDARRALNL 212 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHH
Confidence 21 1111 11122445577889999875544333
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.04 E-value=1.6e-09 Score=103.17 Aligned_cols=193 Identities=16% Similarity=0.112 Sum_probs=104.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.|+|++..++.+..++....... .....+.++|++|+|||+||+.+.+.... .+ ..+..+...... .+...+
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~~~~---~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANEMGV---NL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHhCC---CE---EEeccchhcCch-hHHHHH
Confidence 58999999999988886422111 33456889999999999999999886422 11 112211111111 122222
Q ss_pred HHhccCCC----Cccc-HHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHhhc-C
Q 047559 265 ESITFASC----DLKA-LNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAATM-E 338 (444)
Q Consensus 265 ~~l~~~~~----~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~~-~ 338 (444)
..+....- +... .......+...+.+.+..+|+++..+.. .|. .. ..+.+-|..||+...+...+ .
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~~---~~---~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SVR---LD---LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--cee---ec---CCCeEEEEecCCccccCHHHHh
Confidence 22221110 0000 0111233444444445555555543321 110 11 12245555677754433221 1
Q ss_pred -CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHH
Q 047559 339 -PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGL 397 (444)
Q Consensus 339 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 397 (444)
-...+.+++++.++..+++.+.+...... ...+....|++.|+|.|-.+..++..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 12457899999999999998876432211 12334567999999999776555543
No 12
>PRK06893 DNA replication initiation factor; Validated
Probab=99.01 E-value=8.4e-09 Score=93.52 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=95.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
+.+.|+|++|+|||+|++.+++..... ...+.|+++... ...... +.+.+. +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~---~~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKS---QYFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHh---hhhhHH---------------------HHhhcc-c
Confidence 578999999999999999999874322 224456665321 000001 111121 2
Q ss_pred eEEEEEeCCCCCC-hhcHHH-hhcccCCC-CCCcEEE-EecCC---------hHHHhhcCCCCcccCCCCChHhHHHHHH
Q 047559 292 KLLLVLDDVWNED-YCLWED-LKAPFLAA-APNSKII-VTTRH---------AHVAATMEPIQQYNLQCLSDEDCWSLFM 358 (444)
Q Consensus 292 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ii-vTTr~---------~~va~~~~~~~~~~l~~L~~~~~~~lf~ 358 (444)
.-+|+|||+|... ...|+. +...+... ..|..+| +|+.. +.+...+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998742 234553 33333221 2455554 45543 3555555556789999999999999999
Q ss_pred HhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 359 MHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
+.++...- ..-+++..-|++.+.|..-.+..+-..|
T Consensus 172 ~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 88864321 1223455678999998877766655544
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.01 E-value=2.4e-09 Score=102.77 Aligned_cols=194 Identities=16% Similarity=0.148 Sum_probs=102.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..|+|++..++.+..++....... .....+.|+|++|+|||+||+.+++.... .+ .+++.+ .......+..+
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~GppG~GKT~la~~ia~~l~~---~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRG-EALDHVLLYGPPGLGKTTLANIIANEMGV---NI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCccHHHHHHHHHHHhCC---Ce---EEEecc-cccChHHHHHH
Confidence 469999999999888775421111 34467889999999999999999987432 11 112211 11111222233
Q ss_pred HHHhccCCC----CcccH-HHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHhhc-
Q 047559 264 LESITFASC----DLKAL-NEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAATM- 337 (444)
Q Consensus 264 l~~l~~~~~----~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~~- 337 (444)
+..+....- +...+ ....+.+...+.+.+..+++|+..+.... ...+ .+.+-|..||+...+...+
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~-----~~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSI-----RLDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccce-----eecC---CCceEEeecCCcccCCHHHH
Confidence 332211100 00000 01112223333333444444443221100 0001 1234455666644333221
Q ss_pred C-CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHH
Q 047559 338 E-PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGL 397 (444)
Q Consensus 338 ~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 397 (444)
. -...+.+++++.++..+++.+.+....-. ..++....|++.|+|.|-.+..+...
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 1 12458899999999999999876432211 22334677999999999766665553
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.97 E-value=8.9e-09 Score=101.82 Aligned_cols=193 Identities=19% Similarity=0.214 Sum_probs=112.3
Q ss_pred cccccchhHHH---HHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHH
Q 047559 185 AVFGRQQDKAK---MLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 185 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 261 (444)
.++|++..+.. +..++... ....+.|+|++|+||||||+.+++... . . |+.++.......-++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~~--~-~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGATD--A-P-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHhC--C-C-----EEEEecccccHHHHH
Confidence 58888776555 66666432 335788899999999999999987632 1 2 222222211111122
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEE--ecCChHHH---h
Q 047559 262 ALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIV--TTRHAHVA---A 335 (444)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTr~~~va---~ 335 (444)
.++. ..... ..+++.+|+||+++.......+.+...+.. |..++| ||.+.... .
T Consensus 79 ~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 2222 11111 246788999999988766666666555432 444554 34433211 1
Q ss_pred hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh---cCC-CHHHHHHHHh
Q 047559 336 TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL---RSK-RHDEWDEILN 411 (444)
Q Consensus 336 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L---~~~-~~~~w~~~l~ 411 (444)
..+....+.+.+++.++...++.+.+....... ....++....|++.|+|.|..+..+...+ ... +.+....++.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~ 217 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQ 217 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHh
Confidence 223336789999999999999987653211100 02223455778999999998776555443 122 5555555544
Q ss_pred c
Q 047559 412 S 412 (444)
Q Consensus 412 ~ 412 (444)
.
T Consensus 218 ~ 218 (413)
T PRK13342 218 K 218 (413)
T ss_pred h
Confidence 3
No 15
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.93 E-value=5e-08 Score=100.28 Aligned_cols=214 Identities=11% Similarity=0.045 Sum_probs=126.8
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccc--cCCc--ceeEEEEeCCCCCHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE--DSKF--DVKAWVCVSDDFDVLN 258 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f--~~~~wv~vs~~~~~~~ 258 (444)
++.+.||+.|+++|...|...-.+. ....++.|+|++|.|||++++.|.+..... .... -..++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 4578999999999998886532211 223678899999999999999998764211 1011 1356788777677888
Q ss_pred HHHHHHHHhccCCCC-cccHHHHHHHHHHHh-C--CceEEEEEeCCCCCChhcHHHhhcccC-CCCCCcEEEE--ecCCh
Q 047559 259 ISRALLESITFASCD-LKALNEVQVQIKRAV-D--GKKLLLVLDDVWNEDYCLWEDLKAPFL-AAAPNSKIIV--TTRHA 331 (444)
Q Consensus 259 ~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iiv--TTr~~ 331 (444)
++..|..++....+. ..........+...+ . ....+||||+++......-+.|...+. ....+++|+| +|..-
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 888998888544332 222333444444444 2 224589999997643211122222221 1223455544 33321
Q ss_pred H--------HHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 332 H--------VAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 332 ~--------va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
+ +...++ ...+...|++.++..+++..++-.......+..++.+++.++...|-.=.||.++-...
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1 111221 23467799999999999999885433334455666666655555455555555554433
No 16
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.92 E-value=4.9e-09 Score=86.37 Aligned_cols=117 Identities=20% Similarity=0.264 Sum_probs=82.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcccccc--CCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVED--SKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVD 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 289 (444)
+++.|+|.+|+|||++++.+.+...... ..-...+|+.++...+...+...++.+++.......+...+...+.+.+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 7899999999999999999998742210 01345679999888899999999999998776654566666777777775
Q ss_pred Cc-eEEEEEeCCCCC-ChhcHHHhhcccCCCCCCcEEEEecCC
Q 047559 290 GK-KLLLVLDDVWNE-DYCLWEDLKAPFLAAAPNSKIIVTTRH 330 (444)
Q Consensus 290 ~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTr~ 330 (444)
.. ..+||+|+++.. +...++.+..... ..+.++|+..+.
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44 469999999776 5555555644333 566777777664
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.88 E-value=3e-08 Score=90.02 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=99.2
Q ss_pred cchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047559 189 RQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESIT 268 (444)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~ 268 (444)
....++.+..++.. .....+.|+|++|+|||+||+.+++.... .....++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHH------hH-----
Confidence 34456666666532 22368999999999999999999886421 223445665443211 00
Q ss_pred cCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh-cH-HHhhcccCC-CCCCcEEEEecCChH---------HHhh
Q 047559 269 FASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYC-LW-EDLKAPFLA-AAPNSKIIVTTRHAH---------VAAT 336 (444)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTTr~~~---------va~~ 336 (444)
..+...+.+ .-+|||||++..... .| +.+...+.. ...+..+|+||+... +...
T Consensus 82 -------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 -------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred -------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 011111222 238999999765432 23 334433322 123457888887532 2222
Q ss_pred cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHH
Q 047559 337 MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGL 397 (444)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 397 (444)
+.....+++.+++.++...++...+....-.. -.+..+.|++.+.|+|..+..+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQL----PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 22235789999999999999877543221111 2233456777899999887776543
No 18
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.3e-07 Score=91.89 Aligned_cols=184 Identities=16% Similarity=0.158 Sum_probs=110.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc------------------CCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED------------------SKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~ 245 (444)
..++|.+.-++.+...+..+. -...+.++|+.|+||||+|+.+.+...-.. +.+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 358999999999988886532 125679999999999999999987532110 000011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKI 324 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 324 (444)
.++..+....+ .+..++...+... ..+++-++|+|+++..+...++.+...+.......++
T Consensus 91 ~~~~~~~~~~v------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 91 IEIDAASRTKV------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EEecccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11111110111 1111111111110 1244569999999887766788888777766667777
Q ss_pred EEecCCh-HHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 325 IVTTRHA-HVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 325 ivTTr~~-~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
|++|.+. .+... .+....+++.+++.++..+.+.+.+...+... .++....|++.++|.|-.+...
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 7776543 23222 22336789999999999988877653322111 1234466888999988644433
No 19
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=7.2e-08 Score=98.51 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=112.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc------------------CCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED------------------SKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~ 245 (444)
..++|.+..++.|.+++..+.- ...+.++|..|+||||+|+.+.+...-.. +.|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL-----~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRL-----HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC-----CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 3589999999999998865421 24667999999999999998876532110 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCC
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA----VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPN 321 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 321 (444)
++++.+... ..++....+... ..++.-++|||+++..+...|+.|...+......
T Consensus 91 iEIDAas~r---------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASNR---------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEecccccc---------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 222221111 122222222211 1344558899999988877889888887766677
Q ss_pred cEEEEecCChH-HH-hhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH-HHHH
Q 047559 322 SKIIVTTRHAH-VA-ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL-AAKT 393 (444)
Q Consensus 322 s~iivTTr~~~-va-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~ 393 (444)
.++|+||++.. +. ...+....++++.++.++..+.+.+.+-..+-... .+....|++.++|..- ++..
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 88888777643 22 12223367999999999999988876532221112 2334668889988653 4444
No 20
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.86 E-value=5.6e-09 Score=91.53 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=34.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccc
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE 238 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 238 (444)
.|+||+.+++++...|..... ...+++.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~---~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQS---GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS--------EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999952221 445899999999999999999998876544
No 21
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1.3e-07 Score=90.17 Aligned_cols=177 Identities=16% Similarity=0.221 Sum_probs=115.9
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc----ccccCCcceeEEEEe-CCCCCHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR----AVEDSKFDVKAWVCV-SDDFDVLNI 259 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~~f~~~~wv~v-s~~~~~~~~ 259 (444)
+++|.+.-++.+..++..+.- .....++|+.|+||||+|+.++... .... |+|...|... +....+.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~-----~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~-h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRF-----SHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE-YVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCC-----CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCeEEeccccCCCCCHHH-
Confidence 578988889999998865432 2577899999999999999988742 1223 6777666542 22233333
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHH-h-hc
Q 047559 260 SRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVA-A-TM 337 (444)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va-~-~~ 337 (444)
.+++.+.+.... ..+++=++|+|+++..+...++.+...+.....++.+|++|.+.+.. . ..
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 233333332211 12455577788887777778999999998878899999888765422 1 12
Q ss_pred CCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHH
Q 047559 338 EPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAK 392 (444)
Q Consensus 338 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 392 (444)
+....+++.++++++....+.+... .. . ...+..++..++|.|.-+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~---~~-~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYN---DI-K----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhc---CC-C----HHHHHHHHHHcCCCHHHHH
Confidence 2336789999999999887765431 11 1 1224567888999886543
No 22
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.83 E-value=1.1e-07 Score=91.78 Aligned_cols=216 Identities=14% Similarity=0.075 Sum_probs=115.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcc-eeEEEEeCCCCCH-HHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFD-VKAWVCVSDDFDV-LNISR 261 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~-~~~~~ 261 (444)
..++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.+...- . .+. ..+.+++++-... ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~-~-~~~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYG-D-PWENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcC-c-ccccceEEechhhhhhcchhhhh
Confidence 45889999999998887543 2246889999999999999998876421 1 221 2234444321100 00000
Q ss_pred ---HHHHHhccC-CCCcccHHHHHHHHHHH---h--CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 262 ---ALLESITFA-SCDLKALNEVQVQIKRA---V--DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 262 ---~il~~l~~~-~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
.....+... .......+.....+... . .+.+-+|||||++.........+...+......+++|+||....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 000000000 00000111111112221 1 23445899999977654455556665554445577887775432
Q ss_pred -HHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhc--C-C-CHHHH
Q 047559 333 -VAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLR--S-K-RHDEW 406 (444)
Q Consensus 333 -va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~--~-~-~~~~w 406 (444)
+.. .......+.+.+++.++...++...+...+-.. ..+....+++.++|.+-.+......+. . . +.+.-
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~~v 242 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY----DDDGLELIAYYAGGDLRKAILTLQTAALAAGEITMEAA 242 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 111 112235688899999999888887653322111 233456688888887766554443322 1 2 55554
Q ss_pred HHHHh
Q 047559 407 DEILN 411 (444)
Q Consensus 407 ~~~l~ 411 (444)
..++.
T Consensus 243 ~~~~~ 247 (337)
T PRK12402 243 YEALG 247 (337)
T ss_pred HHHhC
Confidence 44443
No 23
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.3e-07 Score=95.41 Aligned_cols=181 Identities=14% Similarity=0.138 Sum_probs=112.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc-----------------------C
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED-----------------------S 240 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------------~ 240 (444)
.++||.+.-++.|.+++..+.- ...+.++|+.|+||||+|+.+.+...-.. +
T Consensus 16 ddVIGQe~vv~~L~~al~~gRL-----pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRL-----HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 3689999999999998875432 25678999999999999999876532100 0
Q ss_pred CcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhcHHHhhcccC
Q 047559 241 KFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA----VDGKKLLLVLDDVWNEDYCLWEDLKAPFL 316 (444)
Q Consensus 241 ~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 316 (444)
.|...++++.+.. ...++..+.+... ..++.-++|||+++..+...++.|...+.
T Consensus 91 ~hpDviEIdAas~---------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDAASN---------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEeccccc---------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 0001112211111 1122222222221 14556699999999888788888888877
Q ss_pred CCCCCcEEEEecCC-hHHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 317 AAAPNSKIIVTTRH-AHVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 317 ~~~~gs~iivTTr~-~~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
....++++|++|.+ ..+.. ..+....+.+..++.++..+.+.+.+-......+ .+..+.|++.++|.|.-...+
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 65566666665554 44332 2222367899999999999888766532211111 223466899999998755544
No 24
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=2.2e-08 Score=100.48 Aligned_cols=198 Identities=16% Similarity=0.129 Sum_probs=112.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
.+++|.+.-++.|..++....- ...+.++|++|+||||+|+.+++...-.+ .+....|.|.+... +.......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l-----~ha~Lf~GppGtGKTTlA~~lA~~l~c~~-~~~~~cg~C~sc~~-i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL-----GHAYLFSGPRGVGKTTTARLIAMAVNCSG-EDPKPCGECESCLA-VRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHHhccC-CCCCCCCcChhhHH-HhcCCCCc
Confidence 3589999888888888765421 24679999999999999999987643211 12212222211100 00000000
Q ss_pred HHHhccC-CCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHHHhhc-CC
Q 047559 264 LESITFA-SCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHVAATM-EP 339 (444)
Q Consensus 264 l~~l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~va~~~-~~ 339 (444)
+..+... ......+.++...+... ..+++-+||||+++......++.|...+......+.+|++|.. ..+...+ ..
T Consensus 87 v~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 87 VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000000 00111112222222211 1345668999999887767788888887665556666655543 3332222 23
Q ss_pred CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHH
Q 047559 340 IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAK 392 (444)
Q Consensus 340 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 392 (444)
...+++.+++.++....+.+.+...+-.. .++....|++.++|.+--+.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 35799999999999999988764322111 22345669999999886553
No 25
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.7e-07 Score=94.77 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=112.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc------------------CCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED------------------SKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~ 245 (444)
..++|.+..++.|..++..+.- ...+.++|+.|+||||+|+.+.+...-.. +.|.-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl-----~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRL-----HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 3689999999999999875422 36789999999999999998876531100 011111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKI 324 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 324 (444)
+.++.+....+ .++.++...+... ..++.-++|+|+++..+....+.|...+.....+.++
T Consensus 90 iEIDAAs~~~V------------------ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 90 IEIDAASRTKV------------------EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred EEecccccCCH------------------HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 11211111111 1111111111111 2356668999999888777788888877766667778
Q ss_pred EEecCChH-HH-hhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 325 IVTTRHAH-VA-ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 325 ivTTr~~~-va-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
|++|.+.. +. ........+++.+++.++....+.+.+-..+-... ......|++.++|.+-.+..+
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 87776532 22 22233467999999999999888776533222222 223456888999987555443
No 26
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.5e-07 Score=98.13 Aligned_cols=184 Identities=15% Similarity=0.149 Sum_probs=113.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc------------------CCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED------------------SKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~ 245 (444)
..++|.+.-+..|.+++..+.- ...+.++|+.|+||||+|+.+++...-.. +.|.-.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl-----~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL-----HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 3589999999999888865322 24568999999999999999987642110 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKR-AVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKI 324 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 324 (444)
+++..+... ....+.++...+.. -..+++-++|||+++......++.|+..+.......++
T Consensus 91 iEidAas~~------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRT------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEecccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222111101 11112222222221 12467779999999988878888888888766666777
Q ss_pred EEecCC-hHHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 325 IVTTRH-AHVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 325 ivTTr~-~~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
|++|.+ ..+.. .......|++.+|+.++....+.+.+-...-. .-.+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~----~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP----FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 666554 33332 22233679999999999999888765322111 12234466899999988654444
No 27
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.78 E-value=1.3e-07 Score=87.33 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=101.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAV 288 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 288 (444)
+.+..+.+||++|+||||||+.+.+..... ...||..|.......-.+.|+++-.. ...+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~-----SyrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKH-----SYRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCC-----ceEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 556789999999999999999999874322 24577777654433334444433211 1234
Q ss_pred CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEE--ecCChHHH---hhcCCCCcccCCCCChHhHHHHHHHhhc-
Q 047559 289 DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIV--TTRHAHVA---ATMEPIQQYNLQCLSDEDCWSLFMMHAF- 362 (444)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTr~~~va---~~~~~~~~~~l~~L~~~~~~~lf~~~~~- 362 (444)
..+|.+|++|+|+..+..+.+ ..||.-.+|+-++| ||.++... ..+....++.|++|..++...++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 678999999999776544433 33555677887776 66665543 2234447899999999999999887432
Q ss_pred -cCCC-----CCcc--chHHHHHHHHHHHcCCChH
Q 047559 363 -VGQD-----ITAQ--QISDLFREKVVGKCGGLPL 389 (444)
Q Consensus 363 -~~~~-----~~~~--~~~~~~~~~i~~~~~G~Pl 389 (444)
+... .+.+ .....+..-++..|.|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 2211 1111 1344556677788888644
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.77 E-value=7.6e-08 Score=84.40 Aligned_cols=182 Identities=20% Similarity=0.234 Sum_probs=96.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
.+|+|.++-+..+.-++...... ...+..+.++|++|+||||||+.+.+.... .|. +++.+.--..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r-~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~---~~~---~~sg~~i~k~------- 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKR-GEALDHMLFYGPPGLGKTTLARIIANELGV---NFK---ITSGPAIEKA------- 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCT-TS---EEEEESSTTSSHHHHHHHHHHHCT-----EE---EEECCC--SC-------
T ss_pred HHccCcHHHHhhhHHHHHHHHhc-CCCcceEEEECCCccchhHHHHHHHhccCC---CeE---eccchhhhhH-------
Confidence 46999998888765544321111 145678999999999999999999987432 331 2322110001
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCC--------CCC-----------cEE
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAA--------APN-----------SKI 324 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~i 324 (444)
.++...+.+ + +++-+|++|+++..+...-+.|..++.++ +.+ +-|
T Consensus 90 --------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 --------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp --------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred --------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 111111111 2 24557888999887655444444433221 111 223
Q ss_pred EEecCChHHHhhcCCC-C-cccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 047559 325 IVTTRHAHVAATMEPI-Q-QYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLR 399 (444)
Q Consensus 325 ivTTr~~~va~~~~~~-~-~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 399 (444)
=.|||...+...+..- . +.+++..+.+|-..+..+.+-.- .-+..++.+.+|++.|.|-|--..-+....+
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3577765554433332 2 34799999999999998765321 2233455678899999999987666655443
No 29
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.4e-06 Score=83.99 Aligned_cols=205 Identities=14% Similarity=0.170 Sum_probs=130.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.+.+|+.+++++...|...-.++ ...-+.|+|.+|+|||+.++.+.+.........+ .++|++-...+.-+++..|+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~--~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGE--RPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCC--CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 48899999999998876633222 1223899999999999999999988644321122 78999999999999999999
Q ss_pred HHhccCCCCcccHHHHHHHHHHHh--CCceEEEEEeCCCCCChhcHHHhhcccCCC-CCCcEE--EEecCChHHHhhc--
Q 047559 265 ESITFASCDLKALNEVQVQIKRAV--DGKKLLLVLDDVWNEDYCLWEDLKAPFLAA-APNSKI--IVTTRHAHVAATM-- 337 (444)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~i--ivTTr~~~va~~~-- 337 (444)
+.++..........+....+.+.+ .++.++||||+++......-+.+...+... ...++| |..+.+..+...+
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 999754444455566666777766 467899999999664222112222222221 124443 3344444333222
Q ss_pred ------CCCCcccCCCCChHhHHHHHHHhhccC--CCCCccchHHHHHHHHHHHcCCChHHHHH
Q 047559 338 ------EPIQQYNLQCLSDEDCWSLFMMHAFVG--QDITAQQISDLFREKVVGKCGGLPLAAKT 393 (444)
Q Consensus 338 ------~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 393 (444)
+. ..+...|-+.+|-..++..++-.+ .....+..++.++...++..|-.=.|+..
T Consensus 175 rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 175 RVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 22 337788999999999999887432 22333445555555444444433344433
No 30
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.73 E-value=1.2e-07 Score=79.31 Aligned_cols=125 Identities=19% Similarity=0.159 Sum_probs=71.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 047559 187 FGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLES 266 (444)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~ 266 (444)
+|++..+..+...+.... ...+.|+|++|+|||+|++.+++... . .-...+++..+...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~------~~~v~i~G~~G~GKT~l~~~i~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELPP------PKNLLLYGPPGTGKTTLARAIANELF--R-PGAPFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHhh--c-CCCCeEEEehhhhhhhhHHHHHhhhh
Confidence 377888888888875532 26899999999999999999998753 1 22345666655433322211111000
Q ss_pred hccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCC------CCCcEEEEecCChH
Q 047559 267 ITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAA------APNSKIIVTTRHAH 332 (444)
Q Consensus 267 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTTr~~~ 332 (444)
............++.+|++||++.........+...+... ..+..||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999754222222232222221 35778888887543
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.73 E-value=5.8e-07 Score=91.88 Aligned_cols=199 Identities=17% Similarity=0.163 Sum_probs=129.3
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC-CCHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD-FDVLNISR 261 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~ 261 (444)
+...+-|. .+++.|... .+.+.+.|.-|+|.|||||+-+..... . .-..+.|.+++.. .++..++.
T Consensus 18 ~~~~v~R~----rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~~--~--~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRELA--A--DGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred cccccccH----HHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHhc--C--cccceeEeecCCccCCHHHHHH
Confidence 34455555 445555432 456999999999999999999997632 1 2357899998764 67888899
Q ss_pred HHHHHhccCCCC-------------cccHHHHHHHHHHHhC--CceEEEEEeCCCCCChhcHH-HhhcccCCCCCCcEEE
Q 047559 262 ALLESITFASCD-------------LKALNEVQVQIKRAVD--GKKLLLVLDDVWNEDYCLWE-DLKAPFLAAAPNSKII 325 (444)
Q Consensus 262 ~il~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~ii 325 (444)
.++..+..-.+. ..++..+...+..-+. .++.++||||.+-......+ .+...+...+.+-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 999888744332 1233344444444442 45799999998664323333 3444455567788999
Q ss_pred EecCChHHHhhcC---CCCcccC----CCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 326 VTTRHAHVAATME---PIQQYNL----QCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 326 vTTr~~~va~~~~---~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
||||+..-..... ....+++ =.|+.+|+-++|....- . +..+.-.+.+.+..+|-+-|+..++=.+
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l----~Ld~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L----PLDAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C----CCChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 9999764322111 1122222 24789999999986631 1 1122234679999999999999998888
Q ss_pred cCC
Q 047559 399 RSK 401 (444)
Q Consensus 399 ~~~ 401 (444)
+.+
T Consensus 238 ~~~ 240 (894)
T COG2909 238 RNN 240 (894)
T ss_pred cCC
Confidence 844
No 32
>PF13173 AAA_14: AAA domain
Probab=98.72 E-value=5.7e-08 Score=79.67 Aligned_cols=119 Identities=22% Similarity=0.244 Sum_probs=78.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
+++.|.|+.|+|||||+++++.+.. .....++++..+........ .+ ....+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 6899999999999999999997742 12456777665532211000 00 122333333347
Q ss_pred eEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHhhc------CCCCcccCCCCChHhH
Q 047559 292 KLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAATM------EPIQQYNLQCLSDEDC 353 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~~------~~~~~~~l~~L~~~~~ 353 (444)
+.+|+||++... ..|......+.+.....+|++|+........- +....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 788999999665 46877777777666678999999877665321 1224578888887663
No 33
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=5.1e-07 Score=91.00 Aligned_cols=179 Identities=18% Similarity=0.161 Sum_probs=108.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc------------------CCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED------------------SKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~ 245 (444)
..++|.+..+..|...+.... -...+.++|+.|+||||+|+.+++...-.. +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 358999999999998886532 124678999999999999999986431100 011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKI 324 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 324 (444)
+++.......+ .+...+...+... ..+++-++|+|+++..+...++.|...+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22222111111 1122222222211 2456679999999887777788888888766666766
Q ss_pred EEecCC-hHHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH
Q 047559 325 IVTTRH-AHVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL 389 (444)
Q Consensus 325 ivTTr~-~~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 389 (444)
|++|.+ ..+... ......+++.+++.++....+.+.+-..+ .. ..+.....|++.++|.+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~---~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-IN---SDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHH
Confidence 655543 333322 23346789999999998887776542221 11 122334568888998765
No 34
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.71 E-value=6.8e-07 Score=85.62 Aligned_cols=184 Identities=15% Similarity=0.098 Sum_probs=106.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEe--CCCCCHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCV--SDDFDVLNISR 261 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~ 261 (444)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+.+..... .+.. .++.+ +...... ...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~--~~~~-~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGE--DWRE-NFLELNASDERGID-VIR 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCC--cccc-ceEEeccccccchH-HHH
Confidence 35889999999999888542 22457999999999999999998764221 1111 12222 2221111 111
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HH-hhcCC
Q 047559 262 ALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VA-ATMEP 339 (444)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va-~~~~~ 339 (444)
..+..+....+ .....+-+|++|+++......+..+...+......+.+|+++.... +. .....
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 11111111000 0012356899999977655555666666655455667777764321 11 11122
Q ss_pred CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 340 IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 340 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
...+++.+++.++....+...+....-... +.....+++.++|.+--+....
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 346889999999998888876643221122 2345668889999877644433
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=98.71 E-value=4.6e-07 Score=86.55 Aligned_cols=185 Identities=12% Similarity=0.122 Sum_probs=106.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcc-eeEEEEeCCCCCHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFD-VKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~ 262 (444)
..++|.++.+..|..++... ....+.++|++|+||||+|+.+.+...- . .|. ..+-++.++.... +.++.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~-~-~~~~~~~eln~sd~~~~-~~vr~ 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLG-P-NYKEAVLELNASDDRGI-DVVRN 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhc-c-cCccceeeecccccccH-HHHHH
Confidence 35789888888887776532 2245779999999999999999876311 1 221 1112222222221 12222
Q ss_pred HHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HHh-hcCCC
Q 047559 263 LLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VAA-TMEPI 340 (444)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va~-~~~~~ 340 (444)
++..+...... ...++.-+++||+++.......+.+...+......+++|+++.... +.. .....
T Consensus 84 ~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 84 KIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 22221110000 0024566999999988766666666666654455677777765432 111 11122
Q ss_pred CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 341 QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 341 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
..+++.++++++....+...+-..+-... .+....|++.++|..-.+...
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999888776633222222 233466888898876544433
No 36
>PTZ00202 tuzin; Provisional
Probab=98.71 E-value=1.9e-07 Score=89.42 Aligned_cols=169 Identities=14% Similarity=0.208 Sum_probs=100.0
Q ss_pred CCCCCcCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 177 TSSVSTERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 177 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
...+.+.+.|+||+.++..+...|...+. ...+++.|+|++|+|||||++.+.... ++ . .++. +..+.
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l-----~~-~-qL~v--Nprg~ 322 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKE-----GM-P-AVFV--DVRGT 322 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcC-----Cc-e-EEEE--CCCCH
Confidence 33445677899999999999998865333 233699999999999999999998653 21 1 2222 22267
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHh-----C-CceEEEEEeCCCCCC-hhcHHHhhcccCCCCCCcEEEEecC
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAV-----D-GKKLLLVLDDVWNED-YCLWEDLKAPFLAAAPNSKIIVTTR 329 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTTr 329 (444)
.++++.++.+++.... ....++...|.+.+ . +++.+||+-==.-.+ ..-+++.. .|.....-|.|++---
T Consensus 323 eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evp 399 (550)
T PTZ00202 323 EDTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVP 399 (550)
T ss_pred HHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeeh
Confidence 9999999999997332 22233334443333 3 667776654221111 01122221 2233344566665433
Q ss_pred ChHHH--hh-cCCCCcccCCCCChHhHHHHHHHh
Q 047559 330 HAHVA--AT-MEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 330 ~~~va--~~-~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
.+.+. +. +.....|-+..++.+++..+..+.
T Consensus 400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 22221 11 112256788888888888776554
No 37
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=8.6e-07 Score=88.79 Aligned_cols=197 Identities=18% Similarity=0.171 Sum_probs=112.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcc-eeEEEEeCCCCCHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFD-VKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~ 262 (444)
.+++|.+.-+..|...+..+. -...+.++|+.|+||||+|+.+++...-.. ... ...+..+....+ ...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~-~~~~~~~~~~C~~C~~----C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTIKTCEQCTN----CIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCcc-ccccCcCcCCCCCChH----HHH
Confidence 358999998888888775532 225789999999999999999987532110 000 000000000000 000
Q ss_pred HHHH-------hcc-CCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEE-ecCChH
Q 047559 263 LLES-------ITF-ASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIV-TTRHAH 332 (444)
Q Consensus 263 il~~-------l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TTr~~~ 332 (444)
+... +.. +.....++.++....... +.+++-++|+|+++......|+.|...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 0000 000 000111122222221111 245677899999998877788888888876666666665 444444
Q ss_pred HHhhc-CCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 333 VAATM-EPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 333 va~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
+...+ .....+++.+++.++....+.+.+-..+.... .+....|++.++|.+--+...
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~al~~ 229 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDAVSI 229 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 44332 23356899999999999999887743322122 223456888999987555443
No 38
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.69 E-value=1.1e-06 Score=85.40 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=110.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc-------------------CCcce
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED-------------------SKFDV 244 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~ 244 (444)
..++|.+..++.+..++.... -...+.++|++|+||||+|+.+.....-.. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 358999999999999886532 225788999999999999988875531110 01222
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcE
Q 047559 245 KAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSK 323 (444)
Q Consensus 245 ~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 323 (444)
+++..+..... + +...+...+... ..+++-++|+|++........+.+...+......+.
T Consensus 89 -~~~~~~~~~~~-~-----------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV-D-----------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH-H-----------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22222111111 1 111122221111 124455889999976655567777777755556677
Q ss_pred EEEecCChH-HHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 324 IIVTTRHAH-VAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 324 iivTTr~~~-va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
+|++|.+.. +.. .......+++.++++++...++...+-..+... .++....+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 777765543 222 222335688899999999888887653322111 12445678899999987665554
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=3.4e-07 Score=89.97 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=114.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+.-+..|..++....- ...+.++|+.|+||||+|+.+.+...-. +... ...+.....-..+....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri-----~ha~Lf~GP~GtGKTTlAriLAk~Lnce--~~~~--~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKI-----GHAYIFFGPRGVGKTTIARILAKRLNCE--NPIG--NEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHhcCcc--cccC--ccccCCCcHHHHHHccC
Confidence 3589999999998888865421 2468999999999999999998753211 1100 00111111111111111
Q ss_pred HHHhc---c-CCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHHHh-h
Q 047559 264 LESIT---F-ASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHVAA-T 336 (444)
Q Consensus 264 l~~l~---~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~va~-~ 336 (444)
...+. . ......++.++...+... ..++.-++|+|+++..+...++.|...+........+|++|.. ..+.. .
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 00000 0 001112222333333222 2456669999999988888888888877655555665555543 33322 2
Q ss_pred cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 337 MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
......|.+.+++.++..+.+.+.+-..+-.. .++....|++.++|.+--...+.
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHHHHHHH
Confidence 22335689999999998888877653322111 23345679999999985544443
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.69 E-value=1.7e-07 Score=100.09 Aligned_cols=209 Identities=18% Similarity=0.190 Sum_probs=122.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC---HHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD---VLNISR 261 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~---~~~~~~ 261 (444)
+++||+.|++.|...+..... ....++.+.|..|||||+|++.|.....-..+.|-...+-....+.. ..+.++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHH
Confidence 378999999999999876544 34469999999999999999999876322211121111111222221 223444
Q ss_pred HHHHHhccCC-------------------CC----------------------cccHH-----HHHHHHHHHh-CCceEE
Q 047559 262 ALLESITFAS-------------------CD----------------------LKALN-----EVQVQIKRAV-DGKKLL 294 (444)
Q Consensus 262 ~il~~l~~~~-------------------~~----------------------~~~~~-----~~~~~l~~~l-~~kr~L 294 (444)
+++.++.... .. ....+ ..+..+.... +.++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 4444431110 00 00000 1122233333 456999
Q ss_pred EEEeCCCCCChhcHHHhhcccCCCCC----CcEEE--EecCCh--HHHhhcCCCCcccCCCCChHhHHHHHHHhhccCCC
Q 047559 295 LVLDDVWNEDYCLWEDLKAPFLAAAP----NSKII--VTTRHA--HVAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQD 366 (444)
Q Consensus 295 lVlDdv~~~~~~~~~~l~~~l~~~~~----gs~ii--vTTr~~--~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 366 (444)
+|+||+++.|....+-|......... ...|. .|.+.. .+-........+.|.||+..+...+.........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~- 236 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK- 236 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc-
Confidence 99999988877666655444332211 11222 222322 1112223346799999999999999987753211
Q ss_pred CCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 047559 367 ITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSK 401 (444)
Q Consensus 367 ~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~ 401 (444)
....+....|+++..|+|+-+..+-..|..+
T Consensus 237 ----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 237 ----LLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred ----cccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 2223345679999999999999998888764
No 41
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=4.9e-07 Score=92.31 Aligned_cols=185 Identities=15% Similarity=0.146 Sum_probs=110.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc------------------CCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED------------------SKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~ 245 (444)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+.+...-.. +.|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 368999999999999887542 125789999999999999998876521110 001011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKI 324 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 324 (444)
+.++.+....+ ..+.++...+... ..+++-++|||+++..+....+.|...+......+++
T Consensus 91 lEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 11211111111 1111222111111 1356668999999877666677777777655556677
Q ss_pred EEecCChH-HHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 325 IVTTRHAH-VAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 325 ivTTr~~~-va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
|++|.+.. +.. ..+....+.+.+++.++....+.+.+-..+-.. .......|++.++|.+.-+..+.
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHHHH
Confidence 77765432 221 112225688999999999998887663322111 22344679999999986555544
No 42
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=7.1e-07 Score=91.14 Aligned_cols=198 Identities=14% Similarity=0.144 Sum_probs=110.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC-CcceeEEEEeCCCCCHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS-KFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
.+++|.+.-+..|.+++....- ...+.++|+.|+||||+|+.+.+...-... .......-.++. -...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl-----~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~----C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRL-----HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV----CQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc----cHHHHH
Confidence 3588988888888888865432 256789999999999999998654210000 000000000000 011111
Q ss_pred HHHHh-----ccCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hH
Q 047559 263 LLESI-----TFASCDLKALNEVQVQIKRA----VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AH 332 (444)
Q Consensus 263 il~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~ 332 (444)
|...- ..........++..+.+... ..++.-++|||+++..+...++.+...+......+++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 10000 00000011122222222111 1244558999999998888888888888766666677666543 33
Q ss_pred HH-hhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 333 VA-ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 333 va-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
+. ........+++++++.++....+.+.+-..+-... ......|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 33 22233467999999999998888776533221111 233466888999987655554
No 43
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=5.1e-07 Score=92.42 Aligned_cols=195 Identities=16% Similarity=0.144 Sum_probs=112.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+.-+..|...+....- ...+.++|+.|+||||+|+.+.+...-.. .+. +.++..-...+.|
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl-----~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~~~-------~~pCg~C~~C~~i 82 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRL-----HHAYLFSGTRGVGKTTIARLLAKGLNCET-GIT-------ATPCGECDNCREI 82 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHhhhhcc-CCC-------CCCCCCCHHHHHH
Confidence 3589999999999888865321 24578999999999999999876531110 000 0000000111111
Q ss_pred HHH-------hccC-CCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHH
Q 047559 264 LES-------ITFA-SCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHV 333 (444)
Q Consensus 264 l~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~v 333 (444)
... +... .....++.++...+... ..++.-++|||+++..+....+.|...+.......++|++|.+ ..+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 100 0000 00111122222222211 2466779999999988877888888888766666666665554 333
Q ss_pred Hh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 334 AA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 334 a~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
.. ..+....+++.+++.++....+.+.+-....... +.....|++.++|.+--+..+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 32 2233467999999999999888776522211111 2334568889999887554443
No 44
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=9e-07 Score=87.97 Aligned_cols=185 Identities=18% Similarity=0.187 Sum_probs=112.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccc------------------cccCCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRA------------------VEDSKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------------------~~~~~f~~~ 245 (444)
.+++|.+.-++.+.+.+..+.- ...+.++|+.|+||||+|+.+..... +..+.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri-----~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKI-----PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3589999888888887754321 24789999999999999998875310 000011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKII 325 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 325 (444)
+.++.+....+.+ .+.++...... -+.++.-++|+|+++..+....+.|...+......+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222222 12222221100 013456689999998877777888888887766777777
Q ss_pred EecCC-hHHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 326 VTTRH-AHVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 326 vTTr~-~~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
++|.. ..+... ......+++.+++.++....+.+.+...+.... ++....|++.++|.+-.+...
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~alsl 217 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNALFL 217 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 66643 344332 233467899999999998888876643222222 233456888999987654443
No 45
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=8.3e-07 Score=89.42 Aligned_cols=186 Identities=17% Similarity=0.144 Sum_probs=111.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc------------------CCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED------------------SKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~ 245 (444)
.+++|.+.-+..|..++....- ...+.++|+.|+||||+|+.+.+...-.. +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l-----~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYL-----HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC-----CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 3589999999999999865432 24678999999999999998876431110 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKII 325 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 325 (444)
+.+..+....+.++ +.++..+... -..++.-++|+|+++..+....+.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22322222222211 1222211110 113556689999999887778888888877666677777
Q ss_pred EecCCh-HHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 326 VTTRHA-HVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 326 vTTr~~-~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
++|.+. .+.. ..+....+++.+++.++....+.+.+-..+-... ......|++.++|.+.-+..+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 766543 3221 2223356889999999887776655432221111 2234568889999886555443
No 46
>PRK08727 hypothetical protein; Validated
Probab=98.65 E-value=9.9e-07 Score=80.17 Aligned_cols=151 Identities=16% Similarity=0.089 Sum_probs=89.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.|+|.+|+|||+|++.+++.... ....+.|+++.+ ....+. ..+. .+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~---~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ---AGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hc
Confidence 46999999999999999999876432 222445665322 111111 0111 11 12
Q ss_pred eEEEEEeCCCCCC-hhcHHH-hhcccCC-CCCCcEEEEecCCh---------HHHhhcCCCCcccCCCCChHhHHHHHHH
Q 047559 292 KLLLVLDDVWNED-YCLWED-LKAPFLA-AAPNSKIIVTTRHA---------HVAATMEPIQQYNLQCLSDEDCWSLFMM 359 (444)
Q Consensus 292 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTTr~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~~ 359 (444)
.-+|||||+.... ...|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996532 123433 2222221 23466799999842 2223333446789999999999999998
Q ss_pred hhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 360 HAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
++.... . ...++...-|++.++|-.-.+..+
T Consensus 174 ~a~~~~-l---~l~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 174 RAQRRG-L---ALDEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhCCCCHHHHHHH
Confidence 764322 1 122344566888888776665433
No 47
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.8e-06 Score=83.42 Aligned_cols=194 Identities=16% Similarity=0.136 Sum_probs=113.6
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC-Ccc------eeEEEEeCCCCC
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS-KFD------VKAWVCVSDDFD 255 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~------~~~wv~vs~~~~ 255 (444)
-..++|.+..+..+.+.+..+.- ...+.++|+.|+||+|+|..+.+..--... ... ...-+ ....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl-----~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~--~~~c- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRL-----HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI--DPDH- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC--CCCC-
Confidence 35689999999999998876432 247899999999999999887654310000 000 00000 0000
Q ss_pred HHHHHHHHHHHhccC-------C-C------CcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhcHHHhhcccC
Q 047559 256 VLNISRALLESITFA-------S-C------DLKALNEVQVQIKRAV-----DGKKLLLVLDDVWNEDYCLWEDLKAPFL 316 (444)
Q Consensus 256 ~~~~~~~il~~l~~~-------~-~------~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 316 (444)
...+.+...-... . . ..-.+++ +..+.+++ .+.+-++|+|+++..+....+.|...+.
T Consensus 90 --~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 90 --PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred --hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 0111111000000 0 0 0112233 22333333 2456799999998888888888888887
Q ss_pred CCCCCcEEEEecCChH-HHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 317 AAAPNSKIIVTTRHAH-VAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 317 ~~~~gs~iivTTr~~~-va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
....++.+|++|.+.. +... .+....+.+.+++.++..+++...... . .. .. ...++..++|.|+....+
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~-~~---~~-~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L-PD---DP-RAALAALAEGSVGRALRL 238 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C-CH---HH-HHHHHHHcCCCHHHHHHH
Confidence 6666677777776653 3222 233367999999999999998765311 1 11 11 156889999999866554
Q ss_pred H
Q 047559 395 G 395 (444)
Q Consensus 395 ~ 395 (444)
.
T Consensus 239 l 239 (365)
T PRK07471 239 A 239 (365)
T ss_pred h
Confidence 3
No 48
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.64 E-value=7.1e-08 Score=87.84 Aligned_cols=89 Identities=24% Similarity=0.253 Sum_probs=63.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC--CCHHHHHHHHHHHhccCCCCcccHH------HHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD--FDVLNISRALLESITFASCDLKALN------EVQVQ 283 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~~ 283 (444)
..+.|+|++|+|||||++.++++.... +|+..+|+.++.. +++.++++.+...+-....+.+... .....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~--~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN--HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc--cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999986443 7999999997776 7999999998544433322222111 22222
Q ss_pred HHHH-hCCceEEEEEeCCCC
Q 047559 284 IKRA-VDGKKLLLVLDDVWN 302 (444)
Q Consensus 284 l~~~-l~~kr~LlVlDdv~~ 302 (444)
...+ -.+++++|++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 3222 258999999999954
No 49
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.64 E-value=8.2e-07 Score=91.72 Aligned_cols=202 Identities=17% Similarity=0.158 Sum_probs=118.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCc---ceeEEEEeCCC---CCHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKF---DVKAWVCVSDD---FDVLN 258 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~---~~~~~ 258 (444)
.++|+...+..+...+... ....+.|+|++|+||||||+.+++...... .+ ...-|+.+... .+...
T Consensus 155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~-~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLK-HTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhcc-CCcccCCCCeEEEechhccCCHHH
Confidence 5889999999888877432 235799999999999999999987653322 22 12345544321 12222
Q ss_pred HHHHH---------------HHHhccCCC----------------Cccc-HHHHHHHHHHHhCCceEEEEEeCCCCCChh
Q 047559 259 ISRAL---------------LESITFASC----------------DLKA-LNEVQVQIKRAVDGKKLLLVLDDVWNEDYC 306 (444)
Q Consensus 259 ~~~~i---------------l~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~ 306 (444)
+...+ +...+.... +... ....+..+.+.+.+++++++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 111110000 0111 123567788888889999998888877767
Q ss_pred cHHHhhcccCCCCCCcEEEE--ecCChHH-Hhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHH
Q 047559 307 LWEDLKAPFLAAAPNSKIIV--TTRHAHV-AAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVG 382 (444)
Q Consensus 307 ~~~~l~~~l~~~~~gs~iiv--TTr~~~v-a~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 382 (444)
.|+.+...+....+...|++ ||++... ... ......+.+.+++.++.+.++.+.+-.. .... .+++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~-~v~l---s~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKI-NVHL---AAGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHc-CCCC---CHHHHHHHHH
Confidence 78888776665555555555 5554321 111 1122457889999999999999876322 1111 1233445555
Q ss_pred HcCCChHHHHHHHHH
Q 047559 383 KCGGLPLAAKTLGGL 397 (444)
Q Consensus 383 ~~~G~Plai~~~~~~ 397 (444)
.+..-+-++..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 555556666666443
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.63 E-value=8.2e-07 Score=89.66 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=109.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|++..++.+..|+.....+ ...+.+.|+|++|+||||+|+.+++.. .|+. +-++.++..+ ...+..+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el-----~~~~-ielnasd~r~-~~~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDY-----GWEV-IELNASDQRT-ADVIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCE-EEEccccccc-HHHHHHH
Confidence 45899999999999998653221 225789999999999999999999874 2222 2334443222 2223333
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh----hcHHHhhcccCCCCCCcEEEEecCChH-HHh--h
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY----CLWEDLKAPFLAAAPNSKIIVTTRHAH-VAA--T 336 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTTr~~~-va~--~ 336 (444)
+....... .....++-+||||+++.... ..+..+...+.. .+..||+|+.+.. ... .
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 32221110 00113677999999976532 234555555442 2345666664321 111 1
Q ss_pred cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 337 MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
-.....+.+.+++.++....+.+.+...+-... ..+...|++.++|..-.+......+
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122356889999999998888776643322222 2344668888888766655444333
No 51
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=1.3e-06 Score=88.23 Aligned_cols=191 Identities=14% Similarity=0.150 Sum_probs=106.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|++..++.+...+..+.. ...+.++|+.|+||||+|+.+.+...-. -|.... ++..-...+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl-----~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-------~~~~~~-~Cg~C~sCr~i 82 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL-----THAYIFSGPRGIGKTSIAKIFAKAINCL-------NPKDGD-CCNSCSVCESI 82 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHHHhcCC-------CCCCCC-CCcccHHHHHH
Confidence 3589999999999998865422 2578899999999999999987653111 111100 01111111111
Q ss_pred HHHhc-------cC-CCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecC-ChHH
Q 047559 264 LESIT-------FA-SCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTR-HAHV 333 (444)
Q Consensus 264 l~~l~-------~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr-~~~v 333 (444)
..... .. ......+..+...+... ..+++-++|+|+++..+...++.|...+......+.+|++|. ...+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 11000 00 00001111222111111 123344699999988776778888887766555666665554 3333
Q ss_pred Hh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHH
Q 047559 334 AA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAA 391 (444)
Q Consensus 334 a~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 391 (444)
.. .......+++.++++++....+...+-..+.... ...+..+++.++|.+--+
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDG 217 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHH
Confidence 32 2233467899999999998888776532211111 223466888999976533
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.5e-06 Score=86.76 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=113.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC------------------Cccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS------------------KFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~ 245 (444)
.+++|.+.-...|...+..+. -...+.++|++|+||||+|+.+.+...-... .+...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 358999888787777765432 1246899999999999999999765321100 00011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKR-AVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKI 324 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 324 (444)
..++.+......++ +.+. ..+.. -..+++-++|+|+++.......+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~-----------------~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIR-----------------DAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHH-----------------HHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 12222111111111 1111 11111 12345679999999776555566677766554444555
Q ss_pred EEecCC-hHHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCC-ChHHHHHHHHHhc--
Q 047559 325 IVTTRH-AHVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGG-LPLAAKTLGGLLR-- 399 (444)
Q Consensus 325 ivTTr~-~~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~~L~-- 399 (444)
|++|.+ ..+... ......+.+.+++.++....+...+....-... ++....|++.++| ++.++..+-.+..
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 544443 333332 233467899999999998888876643221222 2334568887765 4666666655432
Q ss_pred -CC-CHHHHHHHHh
Q 047559 400 -SK-RHDEWDEILN 411 (444)
Q Consensus 400 -~~-~~~~w~~~l~ 411 (444)
.. +.+....++.
T Consensus 227 ~~~It~e~V~~~l~ 240 (472)
T PRK14962 227 EGKITLETVHEALG 240 (472)
T ss_pred CCCCCHHHHHHHHc
Confidence 22 6666666554
No 53
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.59 E-value=2.6e-06 Score=74.85 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=64.1
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh-HHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCC
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA-HVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDI 367 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~-~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 367 (444)
+.+-++|+||++..+...++.+...+......+.+|++|++. .+... ......+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456689999998877667888888887666667777777653 22211 123367999999999999888776 1 1
Q ss_pred CccchHHHHHHHHHHHcCCChHH
Q 047559 368 TAQQISDLFREKVVGKCGGLPLA 390 (444)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~G~Pla 390 (444)
. ++.+..|++.++|.|..
T Consensus 170 -~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPGA 187 (188)
T ss_pred -C----HHHHHHHHHHcCCCccc
Confidence 1 23457799999998853
No 54
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.59 E-value=1.1e-06 Score=79.85 Aligned_cols=174 Identities=18% Similarity=0.114 Sum_probs=96.7
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 047559 186 VFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLE 265 (444)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~ 265 (444)
+.|..++....+..+.... .....+.|+|.+|+|||+||+.+++.....+ ....+++..... ..
T Consensus 21 ~~~~~~~~~~~l~~~~~~~----~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~------~~--- 84 (227)
T PRK08903 21 VAGENAELVARLRELAAGP----VADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPL------LA--- 84 (227)
T ss_pred ccCCcHHHHHHHHHHHhcc----CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhH------HH---
Confidence 3455554444444433211 2236789999999999999999998642221 133444433211 00
Q ss_pred HhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCC-CCCCc-EEEEecCChHHHh--------
Q 047559 266 SITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLA-AAPNS-KIIVTTRHAHVAA-------- 335 (444)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~iivTTr~~~va~-------- 335 (444)
+ ... ...-+||+||++..+...-..+...+.. ...+. .+|+|++......
T Consensus 85 -~------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 85 -F------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred -H------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 0 011 2334789999976543333334444432 12344 4666666433221
Q ss_pred hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 047559 336 TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLR 399 (444)
Q Consensus 336 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 399 (444)
.+.....+++.++++++-..++.+.+-.. ... .-++....+++.+.|++..+..+...|.
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~-~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAER-GLQ---LADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 22223578999999988777766543221 111 2234456688889999998887766553
No 55
>PRK09087 hypothetical protein; Validated
Probab=98.59 E-value=1.4e-06 Score=78.68 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=86.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
+.+.|+|++|+|||+|++.++..... .+++.. .+...++.. +.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDA--------LLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCC--------EEecHH------HcchHHHHh---------------------hhc-
Confidence 57899999999999999988865311 133221 111111111 111
Q ss_pred eEEEEEeCCCCCChhcHHHhhcccCC-CCCCcEEEEecCC---------hHHHhhcCCCCcccCCCCChHhHHHHHHHhh
Q 047559 292 KLLLVLDDVWNEDYCLWEDLKAPFLA-AAPNSKIIVTTRH---------AHVAATMEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTr~---------~~va~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
-+|++||+..... .-+.+...+.. ...|..||+|++. ++....+....++++++++.++-.+++.+++
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788899965321 11223332221 2346678888873 3344445556789999999999999998887
Q ss_pred ccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 362 FVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
-.. .. ..-+++..-|++.+.|..-++..+..
T Consensus 167 ~~~-~~---~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 167 ADR-QL---YVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHc-CC---CCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 432 11 12244556788888887777665433
No 56
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=2.8e-06 Score=81.60 Aligned_cols=199 Identities=14% Similarity=0.120 Sum_probs=115.4
Q ss_pred cCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc-CCcceeEEEEeCCCCCHHHHH
Q 047559 182 TERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED-SKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~~~~~~ 260 (444)
.-..++|.+.....+...+..... ...+.|+|+.|+||||+|..+....--.. ..+... ....+.......
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl-----~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKL-----HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCC-----CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 345689999999999998865432 24789999999999999998876532100 001110 001111111122
Q ss_pred HHHHHHhc-------cCC-C------CcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhcHHHhhcccCCCCCC
Q 047559 261 RALLESIT-------FAS-C------DLKALNEVQVQIKRAV-----DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPN 321 (444)
Q Consensus 261 ~~il~~l~-------~~~-~------~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 321 (444)
+.+...-. ... . ..-..++. ..+.+++ .+++-++|+|+++..+....+.|...+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 22221100 000 0 01112332 2344443 356679999999988877788887777654445
Q ss_pred cEEEEec-CChHHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 322 SKIIVTT-RHAHVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 322 s~iivTT-r~~~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
..+|++| +...+... .+....+.+.+++.++..+++.+.... .. ..+.....|++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~---~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS---QG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc---cC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555544 43333222 122367999999999999999874211 11 112234678999999998766554
No 57
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2.7e-06 Score=86.35 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=107.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc------------------CCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED------------------SKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~ 245 (444)
..++|.+.-++.+..++....- ...+.++|+.|+||||+|+.+.....-.. +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~-----~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL-----HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 3589999999999988865422 24678999999999999999876531100 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKII 325 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 325 (444)
+++..+....+. .++.++..+... -..+++-++|+|+++..+....+.+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd-~ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVD-AMRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHH-HHHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 222211111111 111121111100 013566799999998877667788888877655667677
Q ss_pred EecCCh-HHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHH
Q 047559 326 VTTRHA-HVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKT 393 (444)
Q Consensus 326 vTTr~~-~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 393 (444)
++|.+. .+.. ..+....+++.+++.++....+.+.+-..+-.. .+.....|++.++|.+--+..
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~al~ 219 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDALS 219 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 666443 2221 111225789999999999888776553221111 123346688899998764333
No 58
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.58 E-value=8.8e-07 Score=92.50 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=98.2
Q ss_pred CcccccchhHH---HHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKA---KMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..|+|++..+. .+...+.. .....+.|+|++|+||||||+.+++... . +|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~--~-~f~---~lna~~-~~i~--- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTR--A-HFS---SLNAVL-AGVK--- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhc--C-cce---eehhhh-hhhH---
Confidence 35889887764 45555543 2335678999999999999999997632 2 331 111110 0000
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHh--CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEe--cCChH--HH
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAV--DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVT--TRHAH--VA 334 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--Tr~~~--va 334 (444)
+..+......+.+ .+++.+|+|||++..+...++.+...+. .|+.++++ |.+.. +.
T Consensus 92 ---------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ---------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ---------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 1111111222222 2467799999998776666666655443 35555553 33332 11
Q ss_pred h-hcCCCCcccCCCCChHhHHHHHHHhhccCC---CCCccchHHHHHHHHHHHcCCChHHHH
Q 047559 335 A-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQ---DITAQQISDLFREKVVGKCGGLPLAAK 392 (444)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~Plai~ 392 (444)
. ..+....+.+++|+.++...++.+.+-... ........++....|++.+.|..-.+.
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 1 122335799999999999999887653100 000111223345668888888654433
No 59
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=2.1e-06 Score=83.61 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=106.2
Q ss_pred cccccchhHHHHHHHHhcCCCC----CCCCceEEEEEecCCChHHHHHHHHhhccccc------------------cCCc
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSS----DHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE------------------DSKF 242 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------~~~f 242 (444)
.++|.+.-++.|...+..+... ...-...+.++|++|+|||++|+.+.....-. ..|+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5889999999999988764310 00123568899999999999999886542110 0011
Q ss_pred ceeEEEEeC-CCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCC
Q 047559 243 DVKAWVCVS-DDFDVLNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAP 320 (444)
Q Consensus 243 ~~~~wv~vs-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 320 (444)
|. .++... ....+.+ +..+...+... ..+++-++++|+++..+....+.|...+.....
T Consensus 86 D~-~~i~~~~~~i~i~~------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 86 DV-RVVAPEGLSIGVDE------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CE-EEeccccccCCHHH------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11 111110 0011111 11111111111 124555888899988877777777777766566
Q ss_pred CcEEEEecCCh-HHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHH
Q 047559 321 NSKIIVTTRHA-HVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAK 392 (444)
Q Consensus 321 gs~iivTTr~~-~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 392 (444)
+..+|++|.+. .+... .+....+.+.+++.++..+.+.... .. . .+.+..++..++|.|....
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~----~~-~----~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD----GV-D----PETARRAARASQGHIGRAR 211 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc----CC-C----HHHHHHHHHHcCCCHHHHH
Confidence 67676666653 33322 2333678999999999988886432 11 1 2234668899999987543
No 60
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.56 E-value=2.2e-06 Score=78.03 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=91.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.|+|++|+|||+|++.+++.... ....+.++++..... ...+....+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~----- 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ----- 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh--------------------hhHHHHHHhhh-----
Confidence 57899999999999999999876432 222345555432100 00111111111
Q ss_pred eEEEEEeCCCCCCh-hcHHH-hhcccCC-CCCC-cEEEEecCCh---------HHHhhcCCCCcccCCCCChHhHHHHHH
Q 047559 292 KLLLVLDDVWNEDY-CLWED-LKAPFLA-AAPN-SKIIVTTRHA---------HVAATMEPIQQYNLQCLSDEDCWSLFM 358 (444)
Q Consensus 292 r~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~g-s~iivTTr~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~ 358 (444)
--+|+|||+..... ..|+. +...+.. ...| .++|+||+.. ++...+....++++++++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 23789999965421 24543 2222222 1233 4788888754 333444555789999999999999988
Q ss_pred HhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 359 MHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
+++...+ . ...+++..-|++.+.|..-.+..+-..|
T Consensus 178 ~~a~~~~-~---~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRG-F---ELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcC-C---CCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 7664321 1 2234556778888888776665554443
No 61
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.54 E-value=4.3e-06 Score=76.93 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=119.9
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcc----eeEEEEeCCCCCHHHHHHHHHHHh
Q 047559 192 DKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFD----VKAWVCVSDDFDVLNISRALLESI 267 (444)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~----~~~wv~vs~~~~~~~~~~~il~~l 267 (444)
-++.+.++|..+.. .....+.|||.+|+|||++++++...+.... .-+ .++.|.....++...++..|+.++
T Consensus 45 ~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 45 ALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 34455555544433 4456799999999999999999987653222 111 467788888999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHHhCC-ceEEEEEeCCCCC---C---hhcHHHhhcccCCCCCCcEEEEecCChHHHhhc---
Q 047559 268 TFASCDLKALNEVQVQIKRAVDG-KKLLLVLDDVWNE---D---YCLWEDLKAPFLAAAPNSKIIVTTRHAHVAATM--- 337 (444)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~---~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~~--- 337 (444)
+.......+...+...+...++. +-=+||+|++++. . +...-.....|.+...=+-|.+-|+...-+-..
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 98766666666666666666643 3348899999773 1 111222223343334445666666643322111
Q ss_pred --CCCCcccCCCCCh-HhHHHHHHHhh--ccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 338 --EPIQQYNLQCLSD-EDCWSLFMMHA--FVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 338 --~~~~~~~l~~L~~-~~~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
+....+.+..-.. ++...|+.... +.-..+ +.-...++++.|...++|+.=-+..+-
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 1224455555443 34455543321 111122 222346678999999999875554443
No 62
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=3.2e-06 Score=89.50 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=109.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC---------------------Ccc
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS---------------------KFD 243 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---------------------~f~ 243 (444)
.++|.+..++.|..++....- ...+.++|+.|+||||+|+.+.+...-... +++
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri-----~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRI-----NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 589999999999998865432 246889999999999999998765321000 011
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCc
Q 047559 244 VKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKR-AVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNS 322 (444)
Q Consensus 244 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 322 (444)
++++....... ..++.++...+.. -..++.-++|||+++..+...++.|+..+......+
T Consensus 91 -v~eidaas~~~------------------Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 91 -VTEIDAASHGG------------------VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred -EEEecccccCC------------------HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 11111111101 1111222211111 123555588999999888888888988887766677
Q ss_pred EEEEecCC-hHHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHH
Q 047559 323 KIIVTTRH-AHVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAK 392 (444)
Q Consensus 323 ~iivTTr~-~~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 392 (444)
.+|++|.+ +.+... ......|++..++.++...++.+.+-...-... ......|++.++|.+..+.
T Consensus 152 ~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 77665543 344332 233467899999999988888765422211111 2233568889999885443
No 63
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=3e-06 Score=86.73 Aligned_cols=198 Identities=16% Similarity=0.147 Sum_probs=113.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcc--eeEEEEeCCCCCHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFD--VKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~ 261 (444)
.+++|.+..++.|.+.+..+.- ...+.++|+.|+||||+|+.+.+...-.. ... ...+-.+... .-.+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri-----~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~-~~~~~~~~~~~cg~c----~~C~ 93 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRI-----AQAFMLTGVRGVGKTTTARILARALNYEG-PDGDGGPTIDLCGVG----EHCQ 93 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHHhhCcCC-ccccCCCccccCccc----HHHH
Confidence 4689999999999998865432 24788999999999999999986532110 000 0000000000 0011
Q ss_pred HHHHHhcc--------CCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEec-CCh
Q 047559 262 ALLESITF--------ASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTT-RHA 331 (444)
Q Consensus 262 ~il~~l~~--------~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT-r~~ 331 (444)
.|....+. +.....++.++...+... ..+++-++|+|+++..+....+.|...+.....++++|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 11111000 000111122222222111 12445579999998877667888888877666677776655 333
Q ss_pred HHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 332 HVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 332 ~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
.+... .+....+++..++.++....+.+.+-....... .+....|++.++|.+.-+....
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 33322 223367899999999999888876532221111 2344668999999987665544
No 64
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.51 E-value=4.5e-06 Score=75.02 Aligned_cols=190 Identities=14% Similarity=0.125 Sum_probs=105.1
Q ss_pred CCcccccchh-HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHH
Q 047559 183 ERAVFGRQQD-KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 183 ~~~~vGr~~~-~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 261 (444)
+.-++|..++ .-.....+..... .....+.|+|..|+|||.|.+.+++...... .-..+++++ ..++..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~------~~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLS------AEEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEE------HHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeec------HHHHHH
Confidence 4445675333 3344444544422 3345689999999999999999998753321 112344553 456666
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh-cHHH-hhcccCC-CCCCcEEEEecCCh-------
Q 047559 262 ALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYC-LWED-LKAPFLA-AAPNSKIIVTTRHA------- 331 (444)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~iivTTr~~------- 331 (444)
.+...+... .. ..+.+.+. .-=+|+|||++..... .|.. +...+.. ...|.+||+|+...
T Consensus 78 ~~~~~~~~~-----~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 78 EFADALRDG-----EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHTT-----SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHcc-----cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 666655431 11 22333443 3348899999764322 3443 2222222 23567899999643
Q ss_pred --HHHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 332 --HVAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 332 --~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
.+.+.+...-++++++++.++...++.+.+-...- ...+++..-|++.+.+..-.+..+-.
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 23344445567899999999999999888743221 13345566677777776665554433
No 65
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.51 E-value=3e-07 Score=87.48 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=62.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC--CHHHHHHHHHHHhccCCCCcccHHH------HHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF--DVLNISRALLESITFASCDLKALNE------VQVQ 283 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~~~~~~------~~~~ 283 (444)
.-..|+|++|+|||||++.+|+..... +|++++||.+++.. .+.++.+.+...+-.+..+...... ....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999986543 89999999999887 7778888776433333332222111 1112
Q ss_pred HHHH-hCCceEEEEEeCCCC
Q 047559 284 IKRA-VDGKKLLLVLDDVWN 302 (444)
Q Consensus 284 l~~~-l~~kr~LlVlDdv~~ 302 (444)
-..+ -.++++||++|++..
T Consensus 248 Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHcCCCEEEEEEChHH
Confidence 2222 268999999999954
No 66
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.2e-06 Score=84.25 Aligned_cols=200 Identities=14% Similarity=0.176 Sum_probs=109.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEE-eCCCCCHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVC-VSDDFDVLNISRA 262 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~ 262 (444)
..++|.+.-++.|..++..+.- ...+.++|+.|+||||+|+.+.+...-.. .+....|.. ...+...-..-+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~-----~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~-~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRV-----GHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCc-----ceeEEEECCCCCCHHHHHHHHHHHhcCCC-CcCcccccccCCCCCCCCHHHHH
Confidence 3588999888888888864321 24588999999999999998876532110 010000100 0000000000011
Q ss_pred HHHHhcc-----CCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEec-CCh
Q 047559 263 LLESITF-----ASCDLKALNEVQVQIKRAV-----DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTT-RHA 331 (444)
Q Consensus 263 il~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT-r~~ 331 (444)
+...... ........+++.+ +.+.+ .+++-++|+|+++..+...++.+...+......+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 1100000 0000111222222 22222 3455688999998877667888888887666677766655 333
Q ss_pred HHHhhc-CCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 332 HVAATM-EPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 332 ~va~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
.+...+ .....+++.++++++....+...+-..... -.++.+..|++.++|.+--+...
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~----i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS----VDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 333221 122568899999999888877665322111 12334567899999988654443
No 67
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=5.3e-06 Score=84.37 Aligned_cols=197 Identities=14% Similarity=0.138 Sum_probs=110.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
.+++|.+..+..|...+.... -...+.++|+.|+||||+|+.+.+...-.. ..+. .+++.-...+.|
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~-~~~~-------~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCET-APTG-------EPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccC-CCCC-------CCCcccHHHHHH
Confidence 357898888888888876432 125788999999999999999886542110 0000 000000111111
Q ss_pred HHHhcc--------CCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHH
Q 047559 264 LESITF--------ASCDLKALNEVQVQIKR-AVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHV 333 (444)
Q Consensus 264 l~~l~~--------~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~v 333 (444)
...... ..........+...+.. -..+++-+||||+++..+...++.|...+........+|++|.. ..+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 110000 00001111111111111 12356679999999887777778888877654445556665544 444
Q ss_pred Hhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh-HHHHHHHHH
Q 047559 334 AAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP-LAAKTLGGL 397 (444)
Q Consensus 334 a~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~~ 397 (444)
... ......+++.+++.++....+...+........ .+....|++.++|.+ .|+..+..+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 322 223357899999999999888775533221112 234466888899865 566655443
No 68
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.6e-06 Score=87.80 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=111.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+.+...-.. .+. -...++.-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~-~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTT-NDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC------CCCCCccCHHHHHH
Confidence 368999999999988886532 124678999999999999999986532110 000 00011111222222
Q ss_pred HHHhccC-----CCCcccHHH---HHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHH
Q 047559 264 LESITFA-----SCDLKALNE---VQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHV 333 (444)
Q Consensus 264 l~~l~~~-----~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~v 333 (444)
....+.. .......++ +...+... ..+++-++|+|+++..+....+.|...+......+.+|++|.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 2111110 000111222 22211111 1245668999999877666677787777665556666666543 333
Q ss_pred Hhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 334 AAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 334 a~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
... ......+.+..++.++....+...+...+.... .+....|++.++|.+..+.....
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 322 223356888899999988888776533221111 23456789999998876554433
No 69
>PRK05642 DNA replication initiation factor; Validated
Probab=98.47 E-value=5.6e-06 Score=75.26 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=92.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.|+|..|+|||.|++.+++.... .-..++|++... +... . ..+.+.+.+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 57899999999999999999875422 223456665432 2111 0 1122222222
Q ss_pred eEEEEEeCCCCCC-hhcHHH-hhcccCC-CCCCcEEEEecCChHH---------HhhcCCCCcccCCCCChHhHHHHHHH
Q 047559 292 KLLLVLDDVWNED-YCLWED-LKAPFLA-AAPNSKIIVTTRHAHV---------AATMEPIQQYNLQCLSDEDCWSLFMM 359 (444)
Q Consensus 292 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTTr~~~v---------a~~~~~~~~~~l~~L~~~~~~~lf~~ 359 (444)
. +|++||+.... ...|.. +...+.. ...|..+|+|++.... ...+....++++++++.++-.+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67899996432 234544 3333322 2346678888875332 12223336688999999999999986
Q ss_pred hhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 360 HAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
++.... . ...+++..-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~-~---~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG-L---HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 664321 1 1224556778888888876665555444
No 70
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=9.6e-06 Score=82.66 Aligned_cols=189 Identities=14% Similarity=0.089 Sum_probs=108.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.+.....-.. ..+ +-.++.. ...+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-~~~---~~pCg~C----~~C~~i 79 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQ-GPT---ATPCGVC----ESCVAL 79 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcccc-CCC---CCccccc----HHHHHh
Confidence 358999999999999886542 224678999999999999999886531100 000 0000000 000010
Q ss_pred HHH---------hcc-CCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecC-Ch
Q 047559 264 LES---------ITF-ASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTR-HA 331 (444)
Q Consensus 264 l~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr-~~ 331 (444)
... +.. +......+.++...+... ..+++-++|+|+++..+....+.|...+......+.+|++|. ..
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000 000 000111222222222211 134556899999988887788888888877666666665554 34
Q ss_pred HHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH
Q 047559 332 HVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL 389 (444)
Q Consensus 332 ~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 389 (444)
.+.. ..+....+++.+++.++..+.+.+.+-..+.... ......|++.++|.+-
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPR 214 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 4332 2233467999999999988888765533221111 2234568888888775
No 71
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1e-05 Score=79.07 Aligned_cols=184 Identities=16% Similarity=0.177 Sum_probs=103.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc-----CCcceeE-EEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED-----SKFDVKA-WVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----~~f~~~~-wv~vs~~~~~~ 257 (444)
..++|.+..++.+.+.+.... -...+.++|++|+||||+|+.+.+...-.. ..|...+ -+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 357899999999999886532 235889999999999999999876532110 0111111 1111111111
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHHHh-
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHVAA- 335 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~va~- 335 (444)
+....++..+... -..+++-++++|+++......++.+...+......+.+|++|.. ..+..
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111222211100 01244558999999766555677776666544445556655532 22221
Q ss_pred hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHH
Q 047559 336 TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKT 393 (444)
Q Consensus 336 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 393 (444)
.......++..++++++....+...+...+-... .+....+++.++|.+-.+..
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHHHH
Confidence 1223356889999999998888776543221111 23456688888887664433
No 72
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.5e-05 Score=79.99 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=107.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccc--cc----------------CCccee
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAV--ED----------------SKFDVK 245 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~----------------~~f~~~ 245 (444)
..++|.+.-+..+..++....- .....++|+.|+||||+|+.+.....- .. +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i-----~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRV-----SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 3588999999999998865422 246778999999999999988764210 00 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEE
Q 047559 246 AWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKI 324 (444)
Q Consensus 246 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 324 (444)
+++..+... ...+...+...+... ..+++-++|+|+++.......+.|...+........+
T Consensus 91 ~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222111111 011112222222211 1356679999999877666677777777665555566
Q ss_pred EEec-CChHHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 325 IVTT-RHAHVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 325 ivTT-r~~~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
|++| +...+.. .......+.+.+++.++....+...+-..+-... ......|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 5555 3333332 1223357889999999998888776533221111 2334568888999876555444
No 73
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.43 E-value=1.2e-05 Score=80.11 Aligned_cols=185 Identities=13% Similarity=0.081 Sum_probs=109.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
...+.|+|..|+|||+|++.+.+...... .-..+++++ ..+++..+...+.... .....+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-
Confidence 35689999999999999999988543221 112333443 3466667666654311 11223333333
Q ss_pred ceEEEEEeCCCCCCh-hcH-HHhhcccCC-CCCCcEEEEecCCh---------HHHhhcCCCCcccCCCCChHhHHHHHH
Q 047559 291 KKLLLVLDDVWNEDY-CLW-EDLKAPFLA-AAPNSKIIVTTRHA---------HVAATMEPIQQYNLQCLSDEDCWSLFM 358 (444)
Q Consensus 291 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTTr~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~ 358 (444)
..-+|||||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++..+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 334888999966431 122 233333322 23455788887643 222333444567899999999999999
Q ss_pred HhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh------c---CC-CHHHHHHHHhc
Q 047559 359 MHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL------R---SK-RHDEWDEILNS 412 (444)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L------~---~~-~~~~w~~~l~~ 412 (444)
+++-..+ .. ....+++..-|++.++|.|-.+..+...| . .. +.+.-+.++..
T Consensus 286 ~~~~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 286 KEIKNQN-IK-QEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 8874321 10 12335566789999999998776665433 2 12 55666666654
No 74
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=1.4e-05 Score=76.77 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=124.5
Q ss_pred cCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHH
Q 047559 182 TERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 261 (444)
.+..++||+.|+..+.+++...-.. ...+.+-|.|.+|.|||.+...++.+..-.. .-.+++++++-.-.....++.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccchHHHHH
Confidence 3567999999999999988653221 4457899999999999999999998753222 122557777766567788888
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHHHhCC-c-eEEEEEeCCCCCChhcHHHhhcccCC-CCCCcEEEEecCChHH--H--
Q 047559 262 ALLESITFASCDLKALNEVQVQIKRAVDG-K-KLLLVLDDVWNEDYCLWEDLKAPFLA-AAPNSKIIVTTRHAHV--A-- 334 (444)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~-k-r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTr~~~v--a-- 334 (444)
.|...+...........+.+..+.....+ + .+|+|+|+++......-..+...|.+ ..+++++|+.---..+ .
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 88887722211111224455566666643 3 68999999965422222233333332 3456666654321111 1
Q ss_pred --hhc-----CCCCcccCCCCChHhHHHHHHHhhccCCCC-CccchHHHHHHHHHHHcCCChHHHHH
Q 047559 335 --ATM-----EPIQQYNLQCLSDEDCWSLFMMHAFVGQDI-TAQQISDLFREKVVGKCGGLPLAAKT 393 (444)
Q Consensus 335 --~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~Plai~~ 393 (444)
..+ .....+...|.+.++..++|..+.-..... ..+..++..+++++.-.|.+=-|+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHH
Confidence 111 123567788999999999999987443221 22223444444444433444444433
No 75
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.36 E-value=1.1e-06 Score=84.02 Aligned_cols=89 Identities=21% Similarity=0.230 Sum_probs=64.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC--CCHHHHHHHHHHHhccCCCCcccHH------HHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD--FDVLNISRALLESITFASCDLKALN------EVQVQ 283 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~~ 283 (444)
..++|+|++|+|||||++.+++..... +|+..+|+.+++. .++.++++.++..+-....+..... ...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n--hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN--HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc--CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 689999999999999999999985432 7999999999866 7899999998665544333322111 11222
Q ss_pred HHHH-hCCceEEEEEeCCCC
Q 047559 284 IKRA-VDGKKLLLVLDDVWN 302 (444)
Q Consensus 284 l~~~-l~~kr~LlVlDdv~~ 302 (444)
...+ -.+++++|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 268999999999965
No 76
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.6e-05 Score=81.69 Aligned_cols=198 Identities=14% Similarity=0.151 Sum_probs=106.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEE-eCCCCCHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVC-VSDDFDVLNISRA 262 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~ 262 (444)
..++|.+.-+..|...+..+.- ...+.++|+.|+||||+|+.+.+...-.. .++.-.|.. +..++..-...+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri-----~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~-~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRV-----GHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeeEEEECCCCCCHHHHHHHHHHHhCCCC-cCCccccccccCCCCccCHHHHH
Confidence 3589999999988888765322 24588999999999999988876532110 010000110 0000000000011
Q ss_pred HHHHhcc-----CCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEec-CChH
Q 047559 263 LLESITF-----ASCDLKALNEVQVQIKRA----VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTT-RHAH 332 (444)
Q Consensus 263 il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT-r~~~ 332 (444)
+...-.. ........+++...+... ..+++-++|+|+++..+....+.|...+......+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1000000 000011122222221111 23445578999998876667788888877655566655554 4344
Q ss_pred HHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHH
Q 047559 333 VAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAA 391 (444)
Q Consensus 333 va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 391 (444)
+.. .......+++.+++.++....+.+.+-..+... ..+.+..|++.++|..--+
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMRDA 225 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHH
Confidence 432 223446799999999998887776543221111 1234466889999966543
No 77
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.36 E-value=7.3e-06 Score=79.85 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=98.5
Q ss_pred CCcccccchhHHHHHHHHhcCCCC-------CCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSS-------DHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD 255 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 255 (444)
..++.|.+..+++|.+.+...-.. +....+.+.|+|++|+|||+||+.+++... . .| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~-~~-----~~v~~--- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--A-TF-----IRVVG--- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--C-CE-----Eecch---
Confidence 457899999999998876432110 012245699999999999999999998642 1 22 22221
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCC-----------hhc---HHHhhcccC--CC
Q 047559 256 VLNISRALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNED-----------YCL---WEDLKAPFL--AA 318 (444)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------~~~---~~~l~~~l~--~~ 318 (444)
.++..... + ........+.+.. ...+.+|+|||++... ... +..+...+. ..
T Consensus 190 -~~l~~~~~---g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELVRKYI---G-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHHHHhh---h-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111110 0 0011112222222 3457899999986531 111 222222221 12
Q ss_pred CCCcEEEEecCChHHHh-h-cC---CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 319 APNSKIIVTTRHAHVAA-T-ME---PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 319 ~~gs~iivTTr~~~va~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
..+..||.||....... . .. -...+.+...+.++..++|..+..... ....-.+ ..+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~-l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK-LAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC-CCccCCH----HHHHHHcCCCC
Confidence 34677888887543221 1 11 124688999999999999988764322 1111123 45777787764
No 78
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.35 E-value=5.2e-06 Score=79.39 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=84.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+...+.+..++... .-..++.++|++|+|||++|+.+++... . ....++.+. .. .+.++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~--~----~~~~i~~~~-~~-~~~i~~~ 87 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVG--A----EVLFVNGSD-CR-IDFVRNR 87 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhC--c----cceEeccCc-cc-HHHHHHH
Confidence 46899999999999988643 2236788899999999999999987631 1 123344433 11 1111111
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCCCCCCcEEEEecCChHHH-h-hcCCC
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLAAAPNSKIIVTTRHAHVA-A-TMEPI 340 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTr~~~va-~-~~~~~ 340 (444)
+..+... . .+.+.+-+||+||++.. .......+...+.....++++|+||...... . ..+..
T Consensus 88 l~~~~~~-------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFAST-------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHh-------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 0 01134557899999765 2223344544454445677888888654311 1 11222
Q ss_pred CcccCCCCChHhHHHHHH
Q 047559 341 QQYNLQCLSDEDCWSLFM 358 (444)
Q Consensus 341 ~~~~l~~L~~~~~~~lf~ 358 (444)
..+.+...+.++..+++.
T Consensus 153 ~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred eEEEeCCCCHHHHHHHHH
Confidence 456777777777765544
No 79
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=2.8e-05 Score=78.25 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=110.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc-------------------CCcce
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED-------------------SKFDV 244 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~ 244 (444)
..++|.+.-...+...+.... -.....++|+.|+||||+|+.+.+..--.. .|++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 358999988899988886432 224678999999999999998775431000 0111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHH--H--hCCceEEEEEeCCCCCChhcHHHhhcccCCCCC
Q 047559 245 KAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKR--A--VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAP 320 (444)
Q Consensus 245 ~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~--~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 320 (444)
.+.+..+... ..+.+...+.. + ..+++-++|+|+++..+....+.|...+.....
T Consensus 88 v~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 1111111111 12222222211 0 124556899999988877778888888876666
Q ss_pred CcEEEEecCCh-HHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 321 NSKIIVTTRHA-HVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 321 gs~iivTTr~~-~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
.+++|++|.+. .+.. .......+++.+++.++....+.+.+-..+-... +.....|++.++|.+--+..+.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 77777777653 2111 1223367899999999998888766533221111 2345678999999886555543
No 80
>PF14516 AAA_35: AAA-like domain
Probab=98.33 E-value=4.8e-05 Score=72.94 Aligned_cols=201 Identities=14% Similarity=0.098 Sum_probs=118.8
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC-----CCHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD-----FDVL 257 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~ 257 (444)
.+.+|.|....+++.+.|...+ ..+.|.|+..+|||+|...+.+..... .+ ..+++++..- .+..
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~--~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ--GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC--CC-EEEEEEeecCCCcccCCHH
Confidence 4457788867777777776532 589999999999999999998775433 23 4457776542 2456
Q ss_pred HHHHHHHHHhccCCCC-----------cccHHHHHHHHHHHh---CCceEEEEEeCCCCCCh--h---c-HHHhhcccCC
Q 047559 258 NISRALLESITFASCD-----------LKALNEVQVQIKRAV---DGKKLLLVLDDVWNEDY--C---L-WEDLKAPFLA 317 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~--~---~-~~~l~~~l~~ 317 (444)
++++.++..+...-.- ..........+.+++ .+++.+|+||+++..-. . + +..|+.-...
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 6666666555432210 111222333444433 36899999999965321 1 1 1222211111
Q ss_pred CC-----CCcE-EEEecCChHHHhh-----cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCC
Q 047559 318 AA-----PNSK-IIVTTRHAHVAAT-----MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGG 386 (444)
Q Consensus 318 ~~-----~gs~-iivTTr~~~va~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 386 (444)
.. ..-+ |++.+........ ++....++|.+++.+|...|+..+-.. ...+. .++|...++|
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~~~----~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQEQ----LEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCHHH----HHHHHHHHCC
Confidence 00 1112 2222211111111 111246899999999999998765311 11111 5779999999
Q ss_pred ChHHHHHHHHHhcCC
Q 047559 387 LPLAAKTLGGLLRSK 401 (444)
Q Consensus 387 ~Plai~~~~~~L~~~ 401 (444)
+|..+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999765
No 81
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=2.6e-05 Score=80.64 Aligned_cols=191 Identities=13% Similarity=0.171 Sum_probs=107.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCc------ceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKF------DVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f------~~~~wv~vs~~~~~~ 257 (444)
..++|.+.-+..|...+....- ...+.++|+.|+||||+|+.+....--..... .|... ....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl-----~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~--~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKI-----SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN--VNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh--hcCCCcEE
Confidence 3588999999999998865422 25678999999999999999876421100000 00000 00000000
Q ss_pred HHHHHHHHHhcc-CCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEE-ecCChHHH
Q 047559 258 NISRALLESITF-ASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIV-TTRHAHVA 334 (444)
Q Consensus 258 ~~~~~il~~l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TTr~~~va 334 (444)
+ +.. +......+.++...+... ..+++-++|+|+++......+..|...+......+.+|+ |+....+.
T Consensus 91 e--------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 E--------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred E--------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0 000 000111122222222221 135666899999988777778888877766555555554 54444443
Q ss_pred h-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHH
Q 047559 335 A-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKT 393 (444)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 393 (444)
. .......+++.+++.++....+...+-..+-... ...+..|++.++|.+--+..
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 2 2233467999999999998888765432211111 22346688899887654433
No 82
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.9e-05 Score=80.15 Aligned_cols=184 Identities=16% Similarity=0.175 Sum_probs=109.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccc--------------------cCCcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE--------------------DSKFD 243 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~~f~ 243 (444)
..++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.....-. ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 358999999999999886532 22568899999999999998876543100 00232
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcE
Q 047559 244 VKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSK 323 (444)
Q Consensus 244 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 323 (444)
. ..+..+......+ ++.++.++.... ..+++=++|+|+++..+...++.|...+.....++.
T Consensus 92 ~-~~ld~~~~~~vd~-Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDD-IRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHH-HHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 2 1222221111111 112222111100 123455889999988777778888888876666676
Q ss_pred EEEec-CChHHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 324 IIVTT-RHAHVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 324 iivTT-r~~~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
+|++| ....+... ......+++.+++.++....+.+.+-..+-... ......|++.++|..--+...
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 66555 44444332 233467899999999998888765532221111 223466888999877644443
No 83
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.32 E-value=1.2e-05 Score=74.62 Aligned_cols=161 Identities=13% Similarity=0.068 Sum_probs=80.9
Q ss_pred cccccchhHHHHHH---HHhc------CCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC
Q 047559 185 AVFGRQQDKAKMLE---MVLT------DTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD 255 (444)
Q Consensus 185 ~~vGr~~~~~~l~~---~L~~------~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 255 (444)
.++|.+..++.|.+ +... .+-...+....+.++|++|+||||+|+.+++...... .-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecHH--
Confidence 37787766665543 2211 1111113456788999999999999999976531111 1111123333221
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC--------hhcHHHhhcccCCCCCCcEEEEe
Q 047559 256 VLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNED--------YCLWEDLKAPFLAAAPNSKIIVT 327 (444)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivT 327 (444)
++. ....+ .........+... ..-+|+||+++... ....+.+...+........+|++
T Consensus 84 --~l~----~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 --DLV----GEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred --Hhh----hhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 111 11100 0111111222221 23488999997532 11233444444443334455666
Q ss_pred cCChHHHh-------hcCC-CCcccCCCCChHhHHHHHHHhhc
Q 047559 328 TRHAHVAA-------TMEP-IQQYNLQCLSDEDCWSLFMMHAF 362 (444)
Q Consensus 328 Tr~~~va~-------~~~~-~~~~~l~~L~~~~~~~lf~~~~~ 362 (444)
+....... .... ...+.+++++.++..+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 55433211 1111 13578899999999999987763
No 84
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.32 E-value=2.7e-05 Score=77.03 Aligned_cols=181 Identities=15% Similarity=0.077 Sum_probs=100.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
...+.|+|++|+|||+|++.+++...... .-..+++++ ..++...+...+... .... +.+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~----~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVS------SEKFTNDFVNALRNN-----KMEE----FKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEE------HHHHHHHHHHHHHcC-----CHHH----HHHHHHh
Confidence 35689999999999999999998753221 112345554 334444555544321 1222 2223322
Q ss_pred ceEEEEEeCCCCCChhc-H-HHhhcccCC-CCCCcEEEEecCCh-H--------HHhhcCCCCcccCCCCChHhHHHHHH
Q 047559 291 KKLLLVLDDVWNEDYCL-W-EDLKAPFLA-AAPNSKIIVTTRHA-H--------VAATMEPIQQYNLQCLSDEDCWSLFM 358 (444)
Q Consensus 291 kr~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTTr~~-~--------va~~~~~~~~~~l~~L~~~~~~~lf~ 358 (444)
.-+|+|||++...... + +.+...+.. ...+..+|+|+... . +...+.....+.+++.+.++-..++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 3388999997542221 1 223322221 12345677777642 1 11222223468899999999999998
Q ss_pred HhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHH-------hcCC-CHHHHHHHHhc
Q 047559 359 MHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGL-------LRSK-RHDEWDEILNS 412 (444)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~-------L~~~-~~~~w~~~l~~ 412 (444)
+.+...... ..+++...|++.+.|.+-.+.-+-.. .... +.+..+.++..
T Consensus 279 ~~~~~~~~~----l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 279 KKAEEEGLE----LPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKD 336 (405)
T ss_pred HHHHHcCCC----CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 887432211 12345566888888766543332211 1222 66677777664
No 85
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.31 E-value=4.9e-05 Score=71.25 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=104.6
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
++.|.+|+.++..+...+...+. .-..+|.|.|-+|.|||.+.+++++.... ..+|+++-..++..-++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHH
Confidence 56788999999999998865442 23466799999999999999999987522 3489999999999999999
Q ss_pred HHHHhccCCCCc-------ccHHHHHHHHHHH--h--CCceEEEEEeCCCCCChh---cHHHhhcccCCCCCCcEEEEec
Q 047559 263 LLESITFASCDL-------KALNEVQVQIKRA--V--DGKKLLLVLDDVWNEDYC---LWEDLKAPFLAAAPNSKIIVTT 328 (444)
Q Consensus 263 il~~l~~~~~~~-------~~~~~~~~~l~~~--l--~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~iivTT 328 (444)
|+.+......+. .+.......+.++ . .++.++||||+++..... -...+.....--.....+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 999985222211 2222333333331 1 256899999999654211 1121111111111123344444
Q ss_pred CChHHH---hhcCCC--CcccCCCCChHhHHHHHHHh
Q 047559 329 RHAHVA---ATMEPI--QQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 329 r~~~va---~~~~~~--~~~~l~~L~~~~~~~lf~~~ 360 (444)
-...-. ..++.. .++....-+.++...++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 332222 113333 33556777888888887654
No 86
>CHL00181 cbbX CbbX; Provisional
Probab=98.31 E-value=5.5e-05 Score=70.81 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=74.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.++|++|+||||+|+.++......+ .-...-|+.++.. + +...+.+.. .......+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g-~~~~~~~~~v~~~----~----l~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG-YIKKGHLLTVTRD----D----LVGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC-CCCCCceEEecHH----H----HHHHHhccc-----hHHHHHHHHHc---c
Confidence 4588999999999999999976532111 1111225554421 2 222221111 01111222222 2
Q ss_pred eEEEEEeCCCCC---------ChhcHHHhhcccCCCCCCcEEEEecCChHHHhhc--------CCCCcccCCCCChHhHH
Q 047559 292 KLLLVLDDVWNE---------DYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAATM--------EPIQQYNLQCLSDEDCW 354 (444)
Q Consensus 292 r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~~--------~~~~~~~l~~L~~~~~~ 354 (444)
.-+|+||++... .......|...+.+...+.+||+++....+.... .-...+.+++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 349999999642 1122333444454445566777777654443211 11246889999999999
Q ss_pred HHHHHhhcc
Q 047559 355 SLFMMHAFV 363 (444)
Q Consensus 355 ~lf~~~~~~ 363 (444)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998877643
No 87
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.28 E-value=5.3e-06 Score=80.80 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=77.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..+++.+...+.+...|... +.+.++|++|+|||++|+.+++...... .|+.+.||+++..++..+++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeecccccHHHHhccc
Confidence 45788899999999988643 4688899999999999999998764444 68888999999988877665433
Q ss_pred HHHhccCCCCccc-HHHHHHHHHHHh--CCceEEEEEeCCCCCChhc-HHHhhc
Q 047559 264 LESITFASCDLKA-LNEVQVQIKRAV--DGKKLLLVLDDVWNEDYCL-WEDLKA 313 (444)
Q Consensus 264 l~~l~~~~~~~~~-~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~ 313 (444)
. .......- .....+.+.... .+++++||+|++...+... +..+..
T Consensus 246 r----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~ 295 (459)
T PRK11331 246 R----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMM 295 (459)
T ss_pred C----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhh
Confidence 1 11101000 011122222222 2468999999997765443 444433
No 88
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=4.5e-05 Score=76.04 Aligned_cols=180 Identities=14% Similarity=0.145 Sum_probs=104.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc--------------------CCcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED--------------------SKFD 243 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~~f~ 243 (444)
.+++|.+..+..+..++.... -...+.++|+.|+||||+|+.+.+...-.. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999886532 125688999999999999998876431110 0111
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCc
Q 047559 244 VKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNS 322 (444)
Q Consensus 244 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 322 (444)
.+++........ ..+.++...+... ..+++-++|+|+++.......+.|...+......+
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111111001 1111111111111 12556688999997766556677777776655566
Q ss_pred EEEEecCCh-HHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHH
Q 047559 323 KIIVTTRHA-HVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAA 391 (444)
Q Consensus 323 ~iivTTr~~-~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 391 (444)
.+|++|... .+.. .......+++.++++++....+...+-..+-.. .++....|++.++|.+--+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDA 219 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 677666432 2221 122335789999999998888776543211111 2234566888999876533
No 89
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.28 E-value=2.7e-06 Score=91.05 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=86.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEE-EEeCCCCCHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAW-VCVSDDFDVLNI 259 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~w-v~vs~~~~~~~~ 259 (444)
..++||+.++.++++.|..... .-+.++|++|+||||+|+.+.+...... ...+..+| +.++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------
Confidence 4689999999999999876543 3457999999999999999987632111 01223333 222210
Q ss_pred HHHHHHHhccCCCCcccH-HHHHHHHHHHh-CCceEEEEEeCCCCCCh-------hcHH-HhhcccCCCCCCcEEEEecC
Q 047559 260 SRALLESITFASCDLKAL-NEVQVQIKRAV-DGKKLLLVLDDVWNEDY-------CLWE-DLKAPFLAAAPNSKIIVTTR 329 (444)
Q Consensus 260 ~~~il~~l~~~~~~~~~~-~~~~~~l~~~l-~~kr~LlVlDdv~~~~~-------~~~~-~l~~~l~~~~~gs~iivTTr 329 (444)
.......... ..+...+.+.- .+++.+|++|+++.... .+-. .++..+. ...-++|-||.
T Consensus 255 --------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT 324 (852)
T TIGR03345 255 --------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATT 324 (852)
T ss_pred --------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecC
Confidence 0000000011 11112222221 24689999999976421 1111 1222221 12345666666
Q ss_pred ChHHHhh-------cCCCCcccCCCCChHhHHHHHHHh
Q 047559 330 HAHVAAT-------MEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 330 ~~~va~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
.+.+... ......+.+++++.++..+++...
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 5433221 133467999999999999997543
No 90
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=4.1e-05 Score=79.02 Aligned_cols=198 Identities=15% Similarity=0.156 Sum_probs=109.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+.-+..|..++....- ...+.++|+.|+||||+|+.++....-. .++... ...+..-...+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl-----~~a~Lf~Gp~G~GKttlA~~lAk~L~c~--~~~~~~----~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI-----APAYLFTGPRGTGKTSSARILAKSLNCL--NSDKPT----PEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC-----CceEEEECCCCCChHHHHHHHHHHhcCC--CcCCCC----CCCCcccHHHHHH
Confidence 3588999999999888865421 2467899999999999999998764211 110000 0011111111222
Q ss_pred HHHhcc-----CCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHH
Q 047559 264 LESITF-----ASCDLKALNEVQVQIKRA----VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHV 333 (444)
Q Consensus 264 l~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~v 333 (444)
....+. ........+...+.+... ..+++-++|+|+++......++.|...+......+.+|++|.+ ..+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 111110 000011122222222111 1245568899999887777788888887765555655555543 333
Q ss_pred Hhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 334 AAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 334 a~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
... ......+++..++.++....+...+-....... ......|++.++|.+..+..+..
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 223356788889998888777665432111111 22356788899998865544433
No 91
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.27 E-value=9.8e-06 Score=85.99 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=86.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
+.++||+.++..+++.|..... .-+.++|++|+|||++|+.+.+..... ....+..+|. + +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh
Confidence 3689999999999998866433 346799999999999999998764211 1011344443 1 111111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCC---------hhcHHHhhcccCCCCCC-cEEEEecC
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNED---------YCLWEDLKAPFLAAAPN-SKIIVTTR 329 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~g-s~iivTTr 329 (444)
. ... .....++....+.+.+ ..++.+|++|+++... ...-+.++..+. .| -++|-+|.
T Consensus 251 a-------~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt 319 (731)
T TIGR02639 251 A-------GTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTT 319 (731)
T ss_pred h-------hcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecC
Confidence 0 000 0011222222222222 3467899999997431 111222333332 23 34555554
Q ss_pred ChHHHh-------hcCCCCcccCCCCChHhHHHHHHHhh
Q 047559 330 HAHVAA-------TMEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 330 ~~~va~-------~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
...+.. .......+.++.++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 433221 11234678999999999999998644
No 92
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.9e-05 Score=78.89 Aligned_cols=189 Identities=16% Similarity=0.171 Sum_probs=104.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+.-+..|...+.... -...+.++|+.|+||||+|+.+.+..--.. ..+. .++..-.....|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~-~~~~-------~~c~~c~~c~~i 82 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQ-GLTA-------EPCNVCPPCVEI 82 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCC-CCCC-------CCCCccHHHHHH
Confidence 368999998999998886532 125678999999999999998876531100 0000 000000000000
Q ss_pred HHH-------hcc-CCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecC-ChHH
Q 047559 264 LES-------ITF-ASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTR-HAHV 333 (444)
Q Consensus 264 l~~-------l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr-~~~v 333 (444)
... +.. +.....++.++...+... ..+++-++|+|+++..+....+.|...+......+.+|++|. ...+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 000 000 000111222222222211 124455889999988777778888888876556666665554 4444
Q ss_pred Hhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH
Q 047559 334 AAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL 389 (444)
Q Consensus 334 a~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 389 (444)
... ......+++.+++.++....+...+-..+-... ......|++.++|..-
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr 215 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMR 215 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHH
Confidence 332 223357889999999988777665422211111 2334568888888664
No 93
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.24 E-value=9.9e-06 Score=73.68 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=110.2
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEE-EEeCCCCCHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAW-VCVSDDFDVLNISR 261 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w-v~vs~~~~~~~~~~ 261 (444)
-..++|.+..+.-+...+... .......+|++|.|||+-|..+....--.+ .|.+++- .++|..-... +.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~-~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQ-LFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCcc-ccccchhhhccccccccc-chh
Confidence 346899999999999888762 346899999999999999988876643333 5655543 3444322111 100
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHHHh--CCce-EEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HHhh-
Q 047559 262 ALLESITFASCDLKALNEVQVQIKRAV--DGKK-LLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VAAT- 336 (444)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va~~- 336 (444)
. ...+...+........ ..++ -.||||+.+....+.|..+...+......++.|+.+..-. +...
T Consensus 107 ~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 E----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred h----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 0 0111111111110000 1123 3788999999888999999999888777777766555322 2111
Q ss_pred cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC
Q 047559 337 MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL 387 (444)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (444)
...-..|..++|.+++...-+...+-..+-..++. ..+.|++.++|.
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~----al~~I~~~S~Gd 223 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDD----ALKLIAKISDGD 223 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHcCCc
Confidence 11224588899999888877776653322222222 335688888884
No 94
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=6.8e-05 Score=76.55 Aligned_cols=199 Identities=17% Similarity=0.115 Sum_probs=111.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+.-+..|..++.... -...+.++|+.|+||||+|+.+.+..--.. ... ...+....+-..+....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-~~~---~~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVN-GPT---PMPCGECSSCKSIDNDN 86 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcccc-CCC---CCCCccchHHHHHHcCC
Confidence 368999999999999886542 235788999999999999999987532110 000 00000000000000000
Q ss_pred H---HHhccCC-CCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHHHhh-
Q 047559 264 L---ESITFAS-CDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHVAAT- 336 (444)
Q Consensus 264 l---~~l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~va~~- 336 (444)
. ..+.+.. ....++.++...+... ..+++-++|+|+++..+...++.|...+......+.+|++|.. ..+...
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 0 0000000 0011111222221211 2355668999999887777788888887765666777666543 333222
Q ss_pred cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 337 MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
......+++.+++.++....+...+...+-.. -.+....|++.++|.+-.+..+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22335688999999998888877653322111 12344568889999886554443
No 95
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=4.8e-05 Score=75.71 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=90.3
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcc-eeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhC
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFD-VKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVD 289 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 289 (444)
...+.|+|.+|+|||+|++.+.+..... ++. .++|++. .+++..+...+... .... +.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~--~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN--EPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh--CCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 3469999999999999999999875322 233 3456653 45566666655321 1222 222333
Q ss_pred CceEEEEEeCCCCCC-hhcH-HHhhcccCC-CCCCcEEEEecC-ChHHH--------hhcCCCCcccCCCCChHhHHHHH
Q 047559 290 GKKLLLVLDDVWNED-YCLW-EDLKAPFLA-AAPNSKIIVTTR-HAHVA--------ATMEPIQQYNLQCLSDEDCWSLF 357 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTTr-~~~va--------~~~~~~~~~~l~~L~~~~~~~lf 357 (444)
.+.-+|+|||++... ...+ ..+...+.. ...|..||+||. .+.-. ..+....++.+++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345589999997531 1111 223222221 123456888875 32211 12233356789999999999999
Q ss_pred HHhhccCCCCCccchHHHHHHHHHHHcCCChH
Q 047559 358 MMHAFVGQDITAQQISDLFREKVVGKCGGLPL 389 (444)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 389 (444)
.+.+....-. ..+++...|++.+.|..-
T Consensus 273 ~~~~~~~~~~----l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 273 RKMLEIEHGE----LPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHhcCCC----CCHHHHHHHHhccccCHH
Confidence 8876432111 123445667777776533
No 96
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=9.9e-05 Score=74.99 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=89.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.|+|..|+|||.|++.+++...... .--.+++++ ..+++..+...+... ..+ .+.+.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yit------aeef~~el~~al~~~-----~~~----~f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVS------SEEFTNEFINSIRDG-----KGD----SFRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEee------HHHHHHHHHHHHHhc-----cHH----HHHHHhhc-
Confidence 4589999999999999999998743211 112334554 344455554444321 111 22333322
Q ss_pred eEEEEEeCCCCCCh-hcHHH-hhcccCC-CCCCcEEEEecCCh---------HHHhhcCCCCcccCCCCChHhHHHHHHH
Q 047559 292 KLLLVLDDVWNEDY-CLWED-LKAPFLA-AAPNSKIIVTTRHA---------HVAATMEPIQQYNLQCLSDEDCWSLFMM 359 (444)
Q Consensus 292 r~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTTr~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~~ 359 (444)
-=+|+|||+..... ..|.. +...+.. ...|..|||||... .+...+...-++.++..+.+.-.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 24788999966432 22332 3332222 13356688888752 2333344456789999999999999988
Q ss_pred hhccCCCCCccchHHHHHHHHHHHcCCChH
Q 047559 360 HAFVGQDITAQQISDLFREKVVGKCGGLPL 389 (444)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 389 (444)
++....-. .-+++..-|++.+.+..-
T Consensus 458 ka~~r~l~----l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 458 KAVQEQLN----APPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHhcCCC----CCHHHHHHHHHhccCCHH
Confidence 87432211 123444556666665533
No 97
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.21 E-value=8.6e-06 Score=87.49 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=85.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++||+.+++.+++.|..... .-+.++|++|+|||++|+.++...... ...-+..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 3589999999999999976543 245799999999999999998764211 1011244553 1 111111
Q ss_pred HHHHHHhccCCCCcccHHHHHH-HHHHHhCCceEEEEEeCCCCCCh-------hcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 261 RALLESITFASCDLKALNEVQV-QIKRAVDGKKLLLVLDDVWNEDY-------CLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
.+... ....++... .+.+.-..++.+|++|+++..-. .+-..+..+.... ..-++|.+|..+.
T Consensus 248 -------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred -------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 11111 111222222 22222235689999999964210 1112222222111 2245565665554
Q ss_pred HHhh-------cCCCCcccCCCCChHhHHHHHHH
Q 047559 333 VAAT-------MEPIQQYNLQCLSDEDCWSLFMM 359 (444)
Q Consensus 333 va~~-------~~~~~~~~l~~L~~~~~~~lf~~ 359 (444)
+... ......+.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 4321 12335678888888888887764
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.20 E-value=4.4e-05 Score=76.56 Aligned_cols=181 Identities=15% Similarity=0.099 Sum_probs=100.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
...+.|+|++|+|||+|++.+.+...... .--.+++++. .++...+...+... ... .+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTS------EKFTNDFVNALRNN-----TME----EFKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHHh-
Confidence 35689999999999999999998753221 1123445543 23344444444321 112 2233333
Q ss_pred ceEEEEEeCCCCCChhc-H-HHhhcccCC-CCCCcEEEEecCChH---------HHhhcCCCCcccCCCCChHhHHHHHH
Q 047559 291 KKLLLVLDDVWNEDYCL-W-EDLKAPFLA-AAPNSKIIVTTRHAH---------VAATMEPIQQYNLQCLSDEDCWSLFM 358 (444)
Q Consensus 291 kr~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTTr~~~---------va~~~~~~~~~~l~~L~~~~~~~lf~ 358 (444)
+.-+|+|||++...... + +.+...+.. ...|..||+||.... +...+....++++++++.++-..++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 23489999996542211 1 223332221 123455777776432 12233344578999999999999999
Q ss_pred HhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh------cCC--CHHHHHHHHhc
Q 047559 359 MHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL------RSK--RHDEWDEILNS 412 (444)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L------~~~--~~~~w~~~l~~ 412 (444)
+.+-... . ...+++...|++.+.|..-.+.-+-..| ..+ +....+.++..
T Consensus 291 ~~~~~~~-~---~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 291 KKAEEEG-I---DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHcC-C---CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 8874321 1 1223445668888888765433222111 222 66677777765
No 99
>PRK06620 hypothetical protein; Validated
Probab=98.19 E-value=4.3e-05 Score=68.32 Aligned_cols=139 Identities=16% Similarity=0.088 Sum_probs=80.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
+.+.|+|++|+|||+|++.+.+.... .++. ..+.. . +.. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~--------~~~~--~~~~~---------------------~-------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA--------YIIK--DIFFN---------------------E-------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC--------EEcc--hhhhc---------------------h-------hHH-hc
Confidence 67999999999999999987765311 1111 00000 0 011 12
Q ss_pred eEEEEEeCCCCCChhcHHHhhcccCC-CCCCcEEEEecCChH-------HHhhcCCCCcccCCCCChHhHHHHHHHhhcc
Q 047559 292 KLLLVLDDVWNEDYCLWEDLKAPFLA-AAPNSKIIVTTRHAH-------VAATMEPIQQYNLQCLSDEDCWSLFMMHAFV 363 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTr~~~-------va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 363 (444)
.-+|++||++..... .+...+.. ...|..||+|++.+. ..+.+...-++++++++.++...++.+.+..
T Consensus 86 ~d~lliDdi~~~~~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 86 YNAFIIEDIENWQEP---ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred CCEEEEeccccchHH---HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 347889999643211 22222111 145678999887432 2233444457999999999988888776532
Q ss_pred CCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 364 GQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 364 ~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
. .. ...+++..-|++.+.|.--.+.-+-.
T Consensus 163 ~-~l---~l~~ev~~~L~~~~~~d~r~l~~~l~ 191 (214)
T PRK06620 163 S-SV---TISRQIIDFLLVNLPREYSKIIEILE 191 (214)
T ss_pred c-CC---CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1 11 12245566788888776555444433
No 100
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.19 E-value=3.2e-05 Score=72.40 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=73.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.-+.++|++|+|||++|+.+........ ......|+.++. .++ +..+.+.. .......+.+. .
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g-~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~ 121 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLG-YVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---M 121 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---c
Confidence 3588999999999999977765432211 111113444442 122 22222111 11111222222 2
Q ss_pred eEEEEEeCCCCC---------ChhcHHHhhcccCCCCCCcEEEEecCChHHHhhc--C------CCCcccCCCCChHhHH
Q 047559 292 KLLLVLDDVWNE---------DYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAATM--E------PIQQYNLQCLSDEDCW 354 (444)
Q Consensus 292 r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~~--~------~~~~~~l~~L~~~~~~ 354 (444)
.-+|+||++... ....++.+...+.....+.+||+++......... . -...+.+++++.+|..
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358899999632 1122344555555555566777777654332211 1 1245889999999999
Q ss_pred HHHHHhhc
Q 047559 355 SLFMMHAF 362 (444)
Q Consensus 355 ~lf~~~~~ 362 (444)
.++.+.+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99887653
No 101
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.19 E-value=1.5e-05 Score=71.74 Aligned_cols=182 Identities=17% Similarity=0.212 Sum_probs=104.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..|+|.++-++++.=++......+ ..+--+.++|++|.||||||.-+.+...+.- -++-+...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~-------k~tsGp~l--------- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANELGVNL-------KITSGPAL--------- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe-------Eecccccc---------
Confidence 469999988888876665533222 6678899999999999999999998754321 11111111
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhccc--------CCCCCCcEE-----------
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPF--------LAAAPNSKI----------- 324 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l--------~~~~~gs~i----------- 324 (444)
.....+...|.. | .+.=++++|+++......-+.+..++ ...++++|.
T Consensus 89 -----------eK~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 89 -----------EKPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred -----------cChhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 111111222221 2 23345667887665433222222211 112333433
Q ss_pred EEecCChHHHhhcCC--CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 047559 325 IVTTRHAHVAATMEP--IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLR 399 (444)
Q Consensus 325 ivTTr~~~va~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 399 (444)
=-|||.-.+.+-+.. .-+.+++.-+.+|-.++..+.+..- +. +..++.+.+|++...|-|--..-+.+..+
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-~i---~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-GI---EIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-CC---CCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 258886555433322 1356788889999989888876321 11 22234467799999999987665555443
No 102
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=0.00013 Score=74.87 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=107.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+.....+.+.+..... ...+.++|+.|+||||+|+.+.....-.. ..+ ..+++.-...+.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~-----~hayLf~Gp~GtGKTt~Ak~lAkal~c~~-~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKI-----SHAYLFSGPRGTGKTSAAKIFAKAVNCLN-PPD-------GEPCNECEICKAI 82 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCccHHHHHH
Confidence 3689999999999998876432 25678899999999999998875421110 000 0000000111111
Q ss_pred HHHhcc-------C-CCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecC-ChHH
Q 047559 264 LESITF-------A-SCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTR-HAHV 333 (444)
Q Consensus 264 l~~l~~-------~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr-~~~v 333 (444)
...... . ......+.++...+... ..++.-++|+|+++......++.|...+........+|++|. ...+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 100000 0 00111122222222211 135566889999988776778888877765555555555553 3333
Q ss_pred Hh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 334 AA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 334 a~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
.. ..+....+.+.+++.++....+...+-..+-... ......|++.++|.+..+....
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al~~L 221 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDALSIL 221 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 1223356888999999988888776532211111 2334567888888776544333
No 103
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.15 E-value=2e-05 Score=77.19 Aligned_cols=179 Identities=13% Similarity=0.141 Sum_probs=97.0
Q ss_pred CCcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTS-------SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD 255 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 255 (444)
..++.|++..++++.+.+...-. -+....+-|.++|++|+|||++|+.+++... . . |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~-~-----~i~v~~--- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--A-T-----FIRVVG--- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--C-C-----EEEeeh---
Confidence 34689999999999886632110 0013346789999999999999999998632 1 2 222221
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCC-----------hhcHHHhhccc---CC--C
Q 047559 256 VLNISRALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNED-----------YCLWEDLKAPF---LA--A 318 (444)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~ 318 (444)
.++. ....+ .. ......+.+.. ...+.+|+|||++..- ...+..+...+ .. .
T Consensus 199 -~~l~----~~~~g-----~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SELV----QKFIG-----EG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHHh----Hhhcc-----ch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111 11100 00 11122222222 3457899999996531 11112222222 11 1
Q ss_pred CCCcEEEEecCChHHHh--hcCC---CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 319 APNSKIIVTTRHAHVAA--TMEP---IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 319 ~~gs~iivTTr~~~va~--~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
..+..||.||....... ...+ ...+.+.+.+.++-.++|..+.... .....-.+ ..+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~-~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM-NLADDVDL----EELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC-CCCCcCCH----HHHHHHcCCCC
Confidence 23567777887643321 1121 2468899999999999998775332 11111223 44677777653
No 104
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.14 E-value=5.8e-05 Score=67.44 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=74.1
Q ss_pred CcCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 181 STERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
+.-..++|-+.+++.|++....--.+ .+..-+.++|..|+|||+|++.+.+.....+ .--|.+++
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~G-----LRlIev~k-------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQG-----LRLIEVSK-------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcC-----ceEEEECH--------
Confidence 34567999999998887654331111 2235678899999999999999988753222 11222222
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCC----CCCCcEEEEecCChHHH
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLA----AAPNSKIIVTTRHAHVA 334 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~----~~~gs~iivTTr~~~va 334 (444)
.+..++..+...|+. ...+|+|++||+--+ ....+..++..|.- ......|..||...+..
T Consensus 89 -----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 122233333333332 356999999999432 33456777766543 22344555666655543
No 105
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=0.00013 Score=72.43 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=96.6
Q ss_pred CCcccccchhHH-HHHHHHhcCCC-CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 183 ERAVFGRQQDKA-KMLEMVLTDTS-SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 183 ~~~~vGr~~~~~-~l~~~L~~~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
+.-++|...... .....+..... ........+.|+|+.|+|||+|++.+.+..... ...+++++ ..++.
T Consensus 111 dnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~------~~~f~ 181 (445)
T PRK12422 111 ANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVR------SELFT 181 (445)
T ss_pred cceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEee------HHHHH
Confidence 444567666543 23333322111 111233578999999999999999999874321 12234443 23444
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcH--HHhhcccCC-CCCCcEEEEecCCh------
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLW--EDLKAPFLA-AAPNSKIIVTTRHA------ 331 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTTr~~------ 331 (444)
..+...+... .. ..++..+. ..-+|++||+.......| +.+...+.. ...|..||+||...
T Consensus 182 ~~~~~~l~~~-----~~----~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 182 EHLVSAIRSG-----EM----QRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred HHHHHHHhcc-----hH----HHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 4555544321 11 12333333 344888999966432222 223222221 12355788888542
Q ss_pred ---HHHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC
Q 047559 332 ---HVAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL 387 (444)
Q Consensus 332 ---~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (444)
.+...+.....+.+.+++.++...++.+++-...-. ..+++..-|+..+.|.
T Consensus 252 l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~----l~~evl~~la~~~~~d 306 (445)
T PRK12422 252 MEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIR----IEETALDFLIEALSSN 306 (445)
T ss_pred hHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhcCCC
Confidence 122233334678899999999999998877432211 1233444566666544
No 106
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.13 E-value=1.2e-05 Score=66.00 Aligned_cols=96 Identities=22% Similarity=0.144 Sum_probs=52.6
Q ss_pred EEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC-ce
Q 047559 214 IPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG-KK 292 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr 292 (444)
|.|+|++|+|||++|+.+.+.... ..+.++.+.-.+ .........+...+.+.-.. ++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~------~~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF------PFIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS------EEEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc------cccccccccccc---------------ccccccccccccccccccccccc
Confidence 579999999999999999987421 124444332110 01111222222233332223 47
Q ss_pred EEEEEeCCCCCChhc-----------HHHhhcccCCCC---CCcEEEEecCC
Q 047559 293 LLLVLDDVWNEDYCL-----------WEDLKAPFLAAA---PNSKIIVTTRH 330 (444)
Q Consensus 293 ~LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTTr~ 330 (444)
.+|++||++...... ...+...+.... .+..||.||..
T Consensus 60 ~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 60 CVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 999999997653332 333444443322 34566777765
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.09 E-value=4.3e-05 Score=82.42 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=84.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++||+.++.+++..|..... .-+.++|++|+|||++|+.+........ ......+|.- ++..++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh
Confidence 3599999999999999876433 3456899999999999999887632111 0112333321 111111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHh--CCceEEEEEeCCCCCCh-------hcHHHhhcccCCCCCCcEEEEecCCh
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAV--DGKKLLLVLDDVWNEDY-------CLWEDLKAPFLAAAPNSKIIVTTRHA 331 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~gs~iivTTr~~ 331 (444)
...... ...+.....+.+.+ .+++.+|++|+++.... .+-..+..+....+ .-++|-+|..+
T Consensus 242 -------a~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~ 312 (852)
T TIGR03346 242 -------AGAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLD 312 (852)
T ss_pred -------hcchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHH
Confidence 000000 11122222222222 24689999999975310 01112222222212 23555555544
Q ss_pred HHHhh-------cCCCCcccCCCCChHhHHHHHHHh
Q 047559 332 HVAAT-------MEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 332 ~va~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
.+... ......+.+...+.++...++...
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 43221 123356788888999999988754
No 108
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.08 E-value=5e-06 Score=78.82 Aligned_cols=216 Identities=23% Similarity=0.244 Sum_probs=131.3
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCc-ceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKF-DVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAV 288 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 288 (444)
..+.+.++|.|||||||++-.+.. +.. -| +.+.++....-.+...+.-.+...+...... -+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~-~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AAS-EYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---Hhh-hcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHH
Confidence 348999999999999999988877 222 34 4555666655555555555555555543221 122334556667
Q ss_pred CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHhhcCCCCcccCCCCChH-hHHHHHHHhhccCC-C
Q 047559 289 DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAATMEPIQQYNLQCLSDE-DCWSLFMMHAFVGQ-D 366 (444)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~-~ 366 (444)
.++|.++|+||....- ..-..+.-.+..+...-.|+.|+|..... .......+.+|+.. ++.++|...+.... .
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 7899999999983321 11122333444555666788888865433 23355677777654 78888877663321 1
Q ss_pred CCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHHhcccCCCCC--------ccChHHHHHHhhcCCch
Q 047559 367 ITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSKRHDEWDEILNSNILDLPQ--------QNGILSVLRLSYHYLPS 436 (444)
Q Consensus 367 ~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~~~~~~~~--------~~~i~~~l~~sy~~Lp~ 436 (444)
..-...-......|.++.+|.|++|...++..++-...+....++.....+.+ ....+..+.+||.=|..
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 11112223345779999999999999999988887544444433332111111 24466778888866543
No 109
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00011 Score=70.03 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HH-hhcCCCCcccCCCCChHhHHHHHHHhhccCCCC
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VA-ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDI 367 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 367 (444)
+++-++|+|+++..+....+.+...+.....++.+|+||.+.. +. ...+....+.+.+++.+++.+.+.... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc---
Confidence 3344556799988888888888888877667778888777653 22 222333668999999999998887653 11
Q ss_pred CccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 368 TAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
.. .+.+..++..++|.|+....+
T Consensus 181 ~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 112345788999999755443
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.07 E-value=3.3e-05 Score=81.28 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=87.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC---CcceeEEEEeCCCCCHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS---KFDVKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv~vs~~~~~~~~~~ 261 (444)
.++||+.++.++++.|..... .-+.++|++|+|||++|+.++........ ..++.+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 589999999999998876432 23468999999999999998865321110 124455521 11111
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCC--------ChhcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 262 ALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNE--------DYCLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
+ .+.. ...+.+.....+.+.+ +.++.+|++|+++.. ...+...+..++... ..-++|-+|..+.
T Consensus 254 --l---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E 326 (758)
T PRK11034 254 --L---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQE 326 (758)
T ss_pred --h---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHH
Confidence 1 1100 0111222222222223 345789999999742 111222223333222 2345555555444
Q ss_pred HHhh-------cCCCCcccCCCCChHhHHHHHHHh
Q 047559 333 VAAT-------MEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 333 va~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
+... ......+.++.++.++..+++...
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 3221 123467899999999999998864
No 111
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.0003 Score=66.69 Aligned_cols=198 Identities=15% Similarity=0.106 Sum_probs=111.9
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccc------------cccCCcceeEEEEeCC
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRA------------VEDSKFDVKAWVCVSD 252 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------------~~~~~f~~~~wv~vs~ 252 (444)
.++|.+..++.+...+..+.- .....++|+.|+||+++|..+.+..- +....++-..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl-----~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRI-----APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 588999999999998865432 26899999999999999987764421 0011122223432110
Q ss_pred CCCHHHHHHHHHHHhc--cCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEE
Q 047559 253 DFDVLNISRALLESIT--FASCDLKALNEVQVQIKRAV-----DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKII 325 (444)
Q Consensus 253 ~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 325 (444)
...-..+....+...+ ......-.+++ .+.+.+.+ .+++-++|+|+++..+....+.|...+.... .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0000000001111111 00111111222 22333333 3556689999998877777888888876545 44555
Q ss_pred EecCC-hHHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 326 VTTRH-AHVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 326 vTTr~-~~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
++|.+ +.+.. ..+....+.+.++++++..+.+.+.... +.. .. ....++..++|.|..+.....
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~~~-~~----~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--EIL-NI----NFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--ccc-hh----HHHHHHHHcCCCHHHHHHHHH
Confidence 55544 33332 2233467999999999999999876421 110 11 124688899999976655443
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.97 E-value=9.5e-05 Score=79.58 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=38.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++||+.++.++++.|..... .-+.++|++|+|||+||+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~------~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc------CceEEECCCCCCHHHHHHHHHHHh
Confidence 3599999999999999976543 346699999999999999988764
No 113
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.00043 Score=67.01 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=93.7
Q ss_pred CcCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 181 STERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..+.-++|-......-...-.....+ .....+.|+|..|.|||.|++.+.+.... +......+.+ +.+.+.
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g--~~~nplfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~----~se~f~ 155 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPG--GAYNPLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYL----TSEDFT 155 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccC--CcCCcEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEec----cHHHHH
Confidence 34455677665544433322222111 24578999999999999999999987533 2222222222 234455
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-hcHHH-hhcccCC-CCCCcEEEEecCCh------
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY-CLWED-LKAPFLA-AAPNSKIIVTTRHA------ 331 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTTr~~------ 331 (444)
..++..+... -...+++.. .-=++++||++.... ..|+. +...|.. ...|-.||+|++..
T Consensus 156 ~~~v~a~~~~---------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 156 NDFVKALRDN---------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHHHHHhh---------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 5555544321 122344444 233888999966321 12322 3333322 22344899998642
Q ss_pred ---HHHhhcCCCCcccCCCCChHhHHHHHHHhhcc
Q 047559 332 ---HVAATMEPIQQYNLQCLSDEDCWSLFMMHAFV 363 (444)
Q Consensus 332 ---~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 363 (444)
.+...+...-++.+.+++.+....++.+++..
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 34444555577999999999999999887643
No 114
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.93 E-value=6.6e-05 Score=77.18 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=40.6
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
-..++|.++.+.++..++....... ...+++.|+|++|+||||+++.+....
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~-~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLEN-APKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc-CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999886533211 233689999999999999999998763
No 115
>PRK08116 hypothetical protein; Validated
Probab=97.91 E-value=5.5e-05 Score=70.11 Aligned_cols=104 Identities=22% Similarity=0.184 Sum_probs=60.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.|+|.+|+|||.||..+++.... ....+++++ ..+++..+...+.... .... ..+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~----~~~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVN------FPQLLNRIKSTYKSSG--KEDE----NEIIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE------HHHHHHHHHHHHhccc--cccH----HHHHHHhcCC
Confidence 46899999999999999999988532 222345554 3445555554443211 1111 1233334333
Q ss_pred eEEEEEeCCCCCChhcHHH--hhcccCC-CCCCcEEEEecCCh
Q 047559 292 KLLLVLDDVWNEDYCLWED--LKAPFLA-AAPNSKIIVTTRHA 331 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTTr~~ 331 (444)
. ||||||+......+|.. +...+.. ...+..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999996544445543 3332222 13566799999743
No 116
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00072 Score=60.39 Aligned_cols=177 Identities=17% Similarity=0.198 Sum_probs=106.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhccCCCCcccHH----HHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD-DFDVLNISRALLESITFASCDLKALN----EVQVQIKR 286 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~----~~~~~l~~ 286 (444)
.++.++|.-|+|||.+.+.+..... + +.++=+.++. ..+...+...++..+.. ....+.. ...+.+..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~-~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~--~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLN-E----DQVAVVVIDKPTLSDATLLEAIVADLES--QPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcC-C----CceEEEEecCcchhHHHHHHHHHHHhcc--CccchhHHHHHHHHHHHHH
Confidence 6999999999999999995443321 1 1122244444 35677788888888876 2223333 33333444
Q ss_pred Hh-CCce-EEEEEeCCCCCChhcHHHhhcccCCCCCCc---EEEEecCC--------hHHHhhcCCCCc-ccCCCCChHh
Q 047559 287 AV-DGKK-LLLVLDDVWNEDYCLWEDLKAPFLAAAPNS---KIIVTTRH--------AHVAATMEPIQQ-YNLQCLSDED 352 (444)
Q Consensus 287 ~l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTTr~--------~~va~~~~~~~~-~~l~~L~~~~ 352 (444)
.. ++++ ..+++||.+.......+.++....-...++ +|+..... ......-..... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 6777 999999998876666666554433222222 23333321 111111112234 8999999999
Q ss_pred HHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 353 CWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 353 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
...++..+.-+...+. +-.-+.....|.....|.|.++..++.
T Consensus 205 t~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9888888765442221 111223345688999999999987764
No 117
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.88 E-value=0.00031 Score=70.40 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=90.8
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEEecCCChHHHHHHHHhhcccccc--CCcceeEEEEeCCCC
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS-------SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED--SKFDVKAWVCVSDDF 254 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~vs~~~ 254 (444)
.++.|.+..+++|.+.+..+-. .+-...+-+.++|++|+|||++|+.+++...... ..+....|+++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 3578899999888877532100 0112346789999999999999999998753221 01123345554432
Q ss_pred CHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCC-------hhc-----HHHhhcccCC--CC
Q 047559 255 DVLNISRALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNED-------YCL-----WEDLKAPFLA--AA 319 (444)
Q Consensus 255 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~--~~ 319 (444)
++ +...... ....+..+.....+.. .+++++|+||+++..- ..+ ...+...+.. ..
T Consensus 261 ---eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 1110000 0011122222222222 3578999999997521 011 1233333322 12
Q ss_pred CCcEEEEecCChHHHh--hcCCC---CcccCCCCChHhHHHHHHHhh
Q 047559 320 PNSKIIVTTRHAHVAA--TMEPI---QQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 320 ~gs~iivTTr~~~va~--~~~~~---~~~~l~~L~~~~~~~lf~~~~ 361 (444)
.+..||.||....... ...+. ..+++...+.++..++|.++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3455666776554321 12222 358999999999999998875
No 118
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.87 E-value=0.00023 Score=62.33 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=62.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
.++||-++.++.+.-.-.+ ++..-+.|.||+|+||||-+..+++..--.. +-+.+.=.+.|+
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNASd----------- 88 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNASD----------- 88 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccCcc-----------
Confidence 4689999988888776544 3346789999999999998777665532111 112222223332
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHh-------CCceEEEEEeCCCCCChhcHHHhhcc
Q 047559 264 LESITFASCDLKALNEVQVQIKRAV-------DGKKLLLVLDDVWNEDYCLWEDLKAP 314 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l-------~~kr~LlVlDdv~~~~~~~~~~l~~~ 314 (444)
...++-....++.+. .++.-+||||+.++........+++.
T Consensus 89 ----------eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 89 ----------ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred ----------ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHH
Confidence 233444444444433 24556899999988655554555443
No 119
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.87 E-value=0.00037 Score=74.63 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=85.3
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
...++|.+.-++.|.+++............++.++|++|+|||++|+.+.+.... .| +-++++...+..++...
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~---~~---~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR---KF---VRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC---Ce---EEEeCCCcccHHHHcCC
Confidence 3458899998999888664321111122358999999999999999999987421 22 11223332232222110
Q ss_pred HHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhc----HHHhhccc--------CCC-------CCCcE
Q 047559 263 LLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCL----WEDLKAPF--------LAA-------APNSK 323 (444)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l--------~~~-------~~gs~ 323 (444)
...........+...+... ..++-+|+||+++...... -..+...+ .+. ..+..
T Consensus 393 ------~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 393 ------RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred ------CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 0000011111222233332 2334488999996653210 11122211 111 12334
Q ss_pred EEEecCChHH-H-hhcCCCCcccCCCCChHhHHHHHHHhh
Q 047559 324 IIVTTRHAHV-A-ATMEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 324 iivTTr~~~v-a-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
+|.||..... . .......++++.+++.++-.+++..+.
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 4555544321 1 122334678999999998888876653
No 120
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.86 E-value=9.7e-05 Score=60.89 Aligned_cols=88 Identities=20% Similarity=0.046 Sum_probs=46.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.|+|++|+||||+++.+....... ....++++.+........... ...... .............+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEVLDQLL-LIIVGG-KKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccCHHHHH-hhhhhc-cCCCCCHHHHHHHHHHHHHhc
Confidence 579999999999999999998874221 123555555443322111111 001111 111111222222334444333
Q ss_pred -eEEEEEeCCCCCC
Q 047559 292 -KLLLVLDDVWNED 304 (444)
Q Consensus 292 -r~LlVlDdv~~~~ 304 (444)
..+|++|++....
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4899999997753
No 121
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.83 E-value=0.00061 Score=63.10 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=72.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH--------HHh----ccCCCCcccHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL--------ESI----TFASCDLKALNE 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il--------~~l----~~~~~~~~~~~~ 279 (444)
..+.|.|++|+|||+||+.+.... . ...+.+++....+..+++.... ..+ ...... .+..-
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l--g----~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 94 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR--D----RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDI-VRQNW 94 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh--C----CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcc-cceee
Confidence 457799999999999999998632 1 1334566666555555443211 000 000000 00000
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCC----------------CCCcEEEEecCChHHHh-------h
Q 047559 280 VQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAA----------------APNSKIIVTTRHAHVAA-------T 336 (444)
Q Consensus 280 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iivTTr~~~va~-------~ 336 (444)
....+.... .+...|++|++...+...+..|...+... .++.+||+|+....... .
T Consensus 95 ~~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL 173 (262)
T TIGR02640 95 VDNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDAL 173 (262)
T ss_pred cCchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHH
Confidence 000111111 23468999999877666666555544221 13567888887542110 0
Q ss_pred cCCCCcccCCCCChHhHHHHHHHh
Q 047559 337 MEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
......+.+...+.++-.+++..+
T Consensus 174 ~~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 174 LDRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred HhhcEEEECCCCCHHHHHHHHHHh
Confidence 111223455555666655665554
No 122
>PRK10536 hypothetical protein; Provisional
Probab=97.82 E-value=0.00069 Score=61.36 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=74.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEE----eCC-----CCC
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVC----VSD-----DFD 255 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~----vs~-----~~~ 255 (444)
.+.++......++.+|... .++.+.|++|+|||+||..+..+.-..+ .|+..+-+. .+. +-+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCC
Confidence 4667888888888888531 4899999999999999998876532222 444333221 111 011
Q ss_pred HHH----HHHHHHHHhccCCCCcccHHHHHH--------HHHHHhCCceE---EEEEeCCCCCChhcHHHhhcccCCCCC
Q 047559 256 VLN----ISRALLESITFASCDLKALNEVQV--------QIKRAVDGKKL---LLVLDDVWNEDYCLWEDLKAPFLAAAP 320 (444)
Q Consensus 256 ~~~----~~~~il~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 320 (444)
..+ .+.-+...+..-. +....+.... .=..+++|..+ +||+|+..+.+......+.. .-+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCC
Confidence 211 1122222221100 0011111100 01135667655 99999998876655444443 3467
Q ss_pred CcEEEEecCCh
Q 047559 321 NSKIIVTTRHA 331 (444)
Q Consensus 321 gs~iivTTr~~ 331 (444)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999987543
No 123
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.82 E-value=0.0003 Score=59.99 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=76.6
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc-----------------CCcceeEEEEe
Q 047559 188 GRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED-----------------SKFDVKAWVCV 250 (444)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------~~f~~~~wv~v 250 (444)
|.++..+.|...+..+.- ...+.++|+.|+||+++|..+.+..--.. ....-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~l-----~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL-----PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCCc-----ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 455666777777655422 24789999999999999988765421111 01112233322
Q ss_pred CCC---CCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEe
Q 047559 251 SDD---FDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVT 327 (444)
Q Consensus 251 s~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 327 (444)
... ...+++ +.+...+.... ..++.=++|+|+++..+...++.|...+.....++.+|++
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 122221 12222222111 1234568999999998888899999999888889999988
Q ss_pred cCChH-HH-hhcCCCCcccCCCC
Q 047559 328 TRHAH-VA-ATMEPIQQYNLQCL 348 (444)
Q Consensus 328 Tr~~~-va-~~~~~~~~~~l~~L 348 (444)
|.+.. +. ...+....+.+.++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE---
T ss_pred ECChHHChHHHHhhceEEecCCC
Confidence 88654 22 22223344555544
No 124
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.0015 Score=61.92 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=65.4
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh-HHHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCC
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA-HVAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDI 367 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~-~va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 367 (444)
+++=++|+|+++..+....+.+...+.....++.+|++|.+. .+... .+....+.+.+++.++..+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----~ 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----A 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc----c
Confidence 556688899998888888888888888777778887777654 33322 23346789999999999988876531 1
Q ss_pred CccchHHHHHHHHHHHcCCChHHH
Q 047559 368 TAQQISDLFREKVVGKCGGLPLAA 391 (444)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~G~Plai 391 (444)
... .+...+..++|.|+.+
T Consensus 182 -~~~----~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -EIS----EILTALRINYGRPLLA 200 (325)
T ss_pred -ChH----HHHHHHHHcCCCHHHH
Confidence 111 1345678889999643
No 125
>PRK08118 topology modulation protein; Reviewed
Probab=97.77 E-value=1.3e-05 Score=68.81 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=29.3
Q ss_pred EEEEEecCCChHHHHHHHHhhccccccCCcceeEE
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAW 247 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 247 (444)
-|.|+|++|+||||||+.+++.......+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999887655336787776
No 126
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.002 Score=61.02 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=66.7
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HH-hhcCCCCcccCCCCChHhHHHHHHHhhccCCCC
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VA-ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDI 367 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 367 (444)
++.=++|+|+++..+....+.+...+.....++.+|++|.+.+ +. ...+....+.+.+++.++..+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~ 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----I 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----C
Confidence 3455889999988888888988888887777777777766543 33 333344678999999999988886531 1
Q ss_pred CccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 368 TAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
. ....++..++|.|+....+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 1 1245788999999977655
No 127
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.76 E-value=0.0004 Score=68.19 Aligned_cols=117 Identities=18% Similarity=0.123 Sum_probs=73.4
Q ss_pred EEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCce
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKK 292 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 292 (444)
++.|.|+.++||||+++.+.... .+ ..++++.-+......-+.+. ...+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~----~~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LE----EIIYINFDDLRLDRIELLDL-----------------LRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Cc----ceEEEEecchhcchhhHHHH-----------------HHHHHHhhccCC
Confidence 99999999999999997666542 11 14555433221111100111 111111112277
Q ss_pred EEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHhh------cCCCCcccCCCCChHhHHH
Q 047559 293 LLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAAT------MEPIQQYNLQCLSDEDCWS 355 (444)
Q Consensus 293 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~------~~~~~~~~l~~L~~~~~~~ 355 (444)
.+|+||.|... ..|......+.+..+. +|++|+-+...... .+....+.+-||+..|...
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 89999999665 6788887888776666 88888887654422 1334568999999999865
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.76 E-value=0.0004 Score=73.92 Aligned_cols=122 Identities=15% Similarity=0.167 Sum_probs=70.2
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++|.+..++.+...+..... +......++.++|++|+|||+||+.+.... +...+.++++.-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhccc--
Confidence 4588999888888887764211 111234578999999999999999998753 22335555544222111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCc-eEEEEEeCCCCCChhcHHHhhcccCC
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDGK-KLLLVLDDVWNEDYCLWEDLKAPFLA 317 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~ 317 (444)
...+.+..+.....+ ....+.+.++.+ .-+|+||+++..+...++.|...+..
T Consensus 526 ---~~~lig~~~gyvg~~-~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 ---VSRLIGAPPGYVGFE-QGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred ---HHHHhcCCCCCcccc-hhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 111111111111111 011233344333 45999999988877777777766543
No 129
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0001 Score=76.47 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=80.7
Q ss_pred CCcccccchhHHHHHHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCc---ceeEEEEeCCCCCH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKF---DVKAWVCVSDDFDV 256 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~ 256 (444)
...++|.+.-+..+.+.+..... +...++.+....|+.|+|||.||+.+... -| +..+-++.|
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~------Lfg~e~aliR~DMS----- 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA------LFGDEQALIRIDMS----- 558 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH------hcCCCccceeechH-----
Confidence 35699999999999887755322 22255678888999999999999998875 34 333444333
Q ss_pred HHHH-HHHHHHhccCCCCcccHHHHHHHHHHHhCCceE-EEEEeCCCCCChhcHHHhhcccCC
Q 047559 257 LNIS-RALLESITFASCDLKALNEVQVQIKRAVDGKKL-LLVLDDVWNEDYCLWEDLKAPFLA 317 (444)
Q Consensus 257 ~~~~-~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~ 317 (444)
+.. +.-.+.+-+..++--..++ -..|.+.++.++| +|.||++...+++-.+.+...|.+
T Consensus 559 -Ey~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 559 -EYMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred -HHHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 332 2333444444443222222 3356667778887 888999988888878877777654
No 130
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.73 E-value=0.0004 Score=67.99 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=93.8
Q ss_pred CcccccchhHHHHHHHHhcCC-------CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDT-------SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
.++.|.+..+++|.+.+...- .-+-...+-+.++|++|+|||+||+.+++.... .| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---~f---i~i~~------ 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---TF---IRVVG------ 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE---EEEeh------
Confidence 458898888888776553210 001133467999999999999999999986321 22 12211
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC-----------hh---cHHHhhcccCC--CCC
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNED-----------YC---LWEDLKAPFLA--AAP 320 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~ 320 (444)
.++. ....+ .....+...+.......+.+|+||+++..- .. .+..+...+.. ...
T Consensus 213 s~l~----~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEFV----QKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHHH----HHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1111 11100 011111222222334578999999986420 00 11122222211 234
Q ss_pred CcEEEEecCChHHHh--hcCC---CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 321 NSKIIVTTRHAHVAA--TMEP---IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 321 gs~iivTTr~~~va~--~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
+..||.||...+... ...+ ...+.+...+.++..++|..... ......+-++ ..+++.+.|..
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~-~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS-KMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh-cCCCCcccCH----HHHHHHcCCCC
Confidence 567888887654321 2222 24578888888888888876542 2222222233 34666676653
No 131
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00016 Score=72.10 Aligned_cols=186 Identities=14% Similarity=0.150 Sum_probs=108.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
+++|.+.-...|...+....- ..--...|+.|+||||+|+.+....--.. | ....++..-..-+.|.
T Consensus 17 evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhhh
Confidence 479999999999998876432 23456789999999999998876431111 1 1111111111112221
Q ss_pred HH--------hccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HH
Q 047559 265 ES--------ITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VA 334 (444)
Q Consensus 265 ~~--------l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va 334 (444)
.. -..+.....++.++.+.+.-.- .++-=++|+|+|+-.....|+.+...+.........|+.|++.. +.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 0001111222222222222211 34445889999998888889999998877777777777666543 32
Q ss_pred -hhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC
Q 047559 335 -ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL 387 (444)
Q Consensus 335 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (444)
...+..+.|.++.++.++-...+...+-...-..++. ....|++..+|.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~----aL~~ia~~a~Gs 213 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEED----ALSLIARAAEGS 213 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHH----HHHHHHHHcCCC
Confidence 3344557899999999988888776653322222222 223466666664
No 132
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.0008 Score=64.50 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=89.5
Q ss_pred cccc-cchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc-------------------CCcce
Q 047559 185 AVFG-RQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED-------------------SKFDV 244 (444)
Q Consensus 185 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~ 244 (444)
.++| .+.-++.+...+..+. -.....++|+.|+||||+|+.+.+..--.. .|.|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 5666677777765432 225779999999999999988865421000 01121
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhcHHHhhcccCCCCC
Q 047559 245 KAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRA----VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAP 320 (444)
Q Consensus 245 ~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 320 (444)
. ++.... .....++....+... ..+.+=++|+|+++..+....+.|...+.....
T Consensus 81 ~-~i~~~~--------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 81 H-LVAPDG--------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred E-Eecccc--------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 1 111000 011122222222111 234455799999988777777888888877677
Q ss_pred CcEEEEecCChH-HHh-hcCCCCcccCCCCChHhHHHHHHHh
Q 047559 321 NSKIIVTTRHAH-VAA-TMEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 321 gs~iivTTr~~~-va~-~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
++.+|++|.+.. +.. ..+....+++.+++.++....+...
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 888887776533 222 2233467899999999988877643
No 133
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0025 Score=60.39 Aligned_cols=96 Identities=9% Similarity=0.152 Sum_probs=65.6
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh-HHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCC
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA-HVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDI 367 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~-~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 367 (444)
+++=++|+|+++..+...-+.|...+.....++.+|++|.+. .+.. ..+....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 456689999998877777777878777666777777777653 3332 22333668899999999988886431 1
Q ss_pred CccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 368 TAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
. +..+..++..++|.|+....+.
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1113567899999998765443
No 134
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.66 E-value=2.5e-05 Score=64.87 Aligned_cols=87 Identities=24% Similarity=0.183 Sum_probs=48.3
Q ss_pred EEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceE
Q 047559 214 IPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKL 293 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 293 (444)
|.|+|++|+|||+||+.++.... ....-+.++...+..+++...--. ..... .....+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~-~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPS--NGQFE-FKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET---TTTTC-EEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeec--ccccc-cccccccccc-----ccee
Confidence 68999999999999999987641 133446777777777665332211 00000 0000000000 1789
Q ss_pred EEEEeCCCCCChhcHHHhhcc
Q 047559 294 LLVLDDVWNEDYCLWEDLKAP 314 (444)
Q Consensus 294 LlVlDdv~~~~~~~~~~l~~~ 314 (444)
++|||++...+...+..+...
T Consensus 68 il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHH
T ss_pred EEEECCcccCCHHHHHHHHHH
Confidence 999999976555545544443
No 135
>CHL00176 ftsH cell division protein; Validated
Probab=97.66 E-value=0.00095 Score=69.21 Aligned_cols=177 Identities=16% Similarity=0.216 Sum_probs=93.5
Q ss_pred CcccccchhHHHH---HHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKM---LEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l---~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.++.|.++.++++ ++.+..... -+....+-+.++|++|+|||+||+.++....+ -|+.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--------p~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--------PFFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CeeeccH----H
Confidence 3577876655554 444433211 01122457999999999999999999876321 1233321 1
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------hhc----HHHhhcccCC--CCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNED----------YCL----WEDLKAPFLA--AAPN 321 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~g 321 (444)
++.. .... .....+...+.......+++|+|||++... ... +..+...+.. ...+
T Consensus 251 ~f~~----~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVE----MFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHH----Hhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 1110 0000 011122233444446778999999996431 011 2222222211 2345
Q ss_pred cEEEEecCChHHHh--hcCC---CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCC
Q 047559 322 SKIIVTTRHAHVAA--TMEP---IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGG 386 (444)
Q Consensus 322 s~iivTTr~~~va~--~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 386 (444)
..||.||....... ...+ ...+.+...+.++-.++|+.++-.. .... ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-~~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-KLSP----DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-ccch----hHHHHHHHhcCCC
Confidence 66777776644322 1222 2567888889999888888776331 1111 1223557777777
No 136
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.65 E-value=0.00011 Score=65.98 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=29.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEe
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCV 250 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 250 (444)
--++|+|..|+|||||...+... ... .|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~-~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRH-KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcc-cCCEEEEEec
Confidence 47899999999999999998876 344 7877777754
No 137
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.63 E-value=0.00036 Score=68.85 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=85.0
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS-------SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
.++.|.+..+++|.+.+.-.-. -+-...+.+.++|++|+|||++|+.+++... . .| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~-~f---i~V~~se---- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--A-TF---LRVVGSE---- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--C-CE---EEEecch----
Confidence 3578888888888776632100 0012345688999999999999999998632 2 33 1121111
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC-----------hhc---HHHhhcccC--CCCC
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNED-----------YCL---WEDLKAPFL--AAAP 320 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~---~~~l~~~l~--~~~~ 320 (444)
+.. ...+ .....+...+.....+.+.+|+||+++..- ... ...+...+. ....
T Consensus 253 --L~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 --LIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred --hhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 111 1100 011111122222224567899999975320 000 111111111 1234
Q ss_pred CcEEEEecCChHHHhh--cCC---CCcccCCCCChHhHHHHHHHhh
Q 047559 321 NSKIIVTTRHAHVAAT--MEP---IQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 321 gs~iivTTr~~~va~~--~~~---~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
+..||.||........ ..+ ...+++...+.++..++|..+.
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 5678888876544322 222 2468899999999999998765
No 138
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=0.00016 Score=62.31 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=25.9
Q ss_pred EEEEEecCCChHHHHHHHHhhccccccCCcceeEE
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAW 247 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 247 (444)
-|.|+|++|+||||||+.+........-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998664333224555555
No 139
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0021 Score=62.94 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=90.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAV 288 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 288 (444)
..+..+.+.|++|+|||+||..+.... .|+.+=-++-.+ + ++.+ +..............-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~---m----------iG~s--EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPED---M----------IGLS--ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHH---c----------cCcc--HHHHHHHHHHHHHHhh
Confidence 667889999999999999999998762 565543332111 0 0000 0011111122222333
Q ss_pred CCceEEEEEeCCCCCChhcHHHh------------hccc---CCCCCCcEEEEecCChHHHhhcCCC----CcccCCCCC
Q 047559 289 DGKKLLLVLDDVWNEDYCLWEDL------------KAPF---LAAAPNSKIIVTTRHAHVAATMEPI----QQYNLQCLS 349 (444)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~~~~l------------~~~l---~~~~~gs~iivTTr~~~va~~~~~~----~~~~l~~L~ 349 (444)
+..--.||+||+.. ..+|-.+ .-.| |+.+..--|+-||....+...|+-. ..|.++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 55667999999944 2344322 2222 2223333344466667777666532 457888887
Q ss_pred h-HhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 047559 350 D-EDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLR 399 (444)
Q Consensus 350 ~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 399 (444)
. ++..+.++.. +...+...+.++.+...+| +-.+|+.+..++.
T Consensus 674 ~~~~~~~vl~~~-----n~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 674 TGEQLLEVLEEL-----NIFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred chHHHHHHHHHc-----cCCCcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 6 7777776543 2234456666777777777 3344555555544
No 140
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.60 E-value=0.00054 Score=73.85 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=76.4
Q ss_pred CcccccchhHHHHHHHHhcCC---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDT---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++|.+.-+..+...+.... .+...+..++.++|++|+|||+||+.+.+..-- .-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---~~~~~i~id~se~~~-~--- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---SDDAMVRIDMSEFME-K--- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc---CCCcEEEEEhHHhhh-h---
Confidence 468899999888888775421 111123457899999999999999999865311 112234444433111 1
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCC-ceEEEEEeCCCCCChhcHHHhhcccCCC----C-------CCcEEEEec
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDG-KKLLLVLDDVWNEDYCLWEDLKAPFLAA----A-------PNSKIIVTT 328 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivTT 328 (444)
.....+.+..+.....+. ...+.+.++. ..-+|+|||+...+...++.+...+..+ + ..+.||+||
T Consensus 641 -~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 641 -HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred -hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 112222222221111110 1123333322 2359999999887777777777665432 1 223377787
Q ss_pred CC
Q 047559 329 RH 330 (444)
Q Consensus 329 r~ 330 (444)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 75
No 141
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0039 Score=59.71 Aligned_cols=93 Identities=13% Similarity=0.036 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh-HHHh-hcCCCCcccCCCCChHhHHHHHHHhhccCCCC
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA-HVAA-TMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDI 367 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~-~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 367 (444)
+++=++|+|+++..+...-+.|...+.....++.+|++|.+. .+.. ..+....+.+.+++.++....+.... ..
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~----~~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV----TM 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc----CC
Confidence 566689999998887778888888888777777777777653 3332 23334678999999999988775431 11
Q ss_pred CccchHHHHHHHHHHHcCCChHHH
Q 047559 368 TAQQISDLFREKVVGKCGGLPLAA 391 (444)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~G~Plai 391 (444)
. ...+..++..++|.|...
T Consensus 183 -~----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 183 -S----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred -C----HHHHHHHHHHcCCCHHHH
Confidence 1 112356788999999744
No 142
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0037 Score=58.58 Aligned_cols=200 Identities=14% Similarity=0.180 Sum_probs=109.7
Q ss_pred cccccchhHHHHHHHHhcCCCC-------CCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSS-------DHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.+-|-++.+++|.+...-+-.+ +-.+.+-|.++|++|.|||-||+.|+++... .|+.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A--------tFIrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA--------TFIRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc--------eEEEeccH----
Confidence 4677888888887765332111 1144578999999999999999999987422 23433331
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC-ceEEEEEeCCCCCCh-----------hc---HHHhhcccC--CCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDG-KKLLLVLDDVWNEDY-----------CL---WEDLKAPFL--AAAP 320 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-----------~~---~~~l~~~l~--~~~~ 320 (444)
++.+..+ +. -..+...+.+..+. .+.+|++|.++.... +- .-+|...+. +...
T Consensus 220 ElVqKYi---GE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ELVQKYI---GE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred HHHHHHh---cc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 2221111 11 12244455555544 478999999865210 11 112223332 2244
Q ss_pred CcEEEEecCChHHHh--hcCCC---CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh----HHH
Q 047559 321 NSKIIVTTRHAHVAA--TMEPI---QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP----LAA 391 (444)
Q Consensus 321 gs~iivTTr~~~va~--~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P----lai 391 (444)
..|||..|...++.. .+.+. ..+++..-+.+.-.++|.-+. .......+-+++. +++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt-rkM~l~~dvd~e~----la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT-RKMNLADDVDLEL----LARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh-hhccCccCcCHHH----HHHhcCCCchHHHHHH
Confidence 578998887665542 23333 457777555555556665554 3333333344544 666776654 345
Q ss_pred HHHHHHhcCC------CHHHHHHHHh
Q 047559 392 KTLGGLLRSK------RHDEWDEILN 411 (444)
Q Consensus 392 ~~~~~~L~~~------~~~~w~~~l~ 411 (444)
.+=||+++-+ +.+.+.+..+
T Consensus 365 ctEAGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 365 CTEAGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred HHHHhHHHHHhccCeecHHHHHHHHH
Confidence 6666665432 4455544444
No 143
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.59 E-value=0.00045 Score=66.03 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcce-eEEEEeCCC-CCHHHHHHHHHHHhccC
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDV-KAWVCVSDD-FDVLNISRALLESITFA 270 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~-~~~~~~~~~il~~l~~~ 270 (444)
..++++.+..-.. -.-+.|+|.+|+|||||++.+.+..... +.+. ++|+.+.+. .++.++++.+...+..+
T Consensus 120 ~~RvID~l~PiGk-----GQR~LIvG~pGtGKTTLl~~la~~i~~~--~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 120 SMRVVDLVAPIGK-----GQRGLIVAPPRAGKTVLLQQIAAAVAAN--HPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hHhhhhheeecCC-----CceEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3457777754322 1456999999999999999988764221 3444 477777764 56788888888877655
Q ss_pred CCCcccHH-----HHHHHHHHHh--CCceEEEEEeCCC
Q 047559 271 SCDLKALN-----EVQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 271 ~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
..+..... .....+.+++ ++++++||+|++.
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 43322211 1222233333 6899999999994
No 144
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00031 Score=71.20 Aligned_cols=166 Identities=16% Similarity=0.219 Sum_probs=91.3
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
+.+.+|-++-+++|++.|.-..-...-+-.++++||++|+|||+|++.+++... . .| +-++++.--|..++-.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--R-kf---vR~sLGGvrDEAEIRG- 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--R-KF---VRISLGGVRDEAEIRG- 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--C-CE---EEEecCccccHHHhcc-
Confidence 456789999999999988553221113337999999999999999999998632 1 33 2334444444333210
Q ss_pred HHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhc----HHHhhcccCC-------------CCCCcEEE
Q 047559 263 LLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCL----WEDLKAPFLA-------------AAPNSKII 325 (444)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~-------------~~~gs~ii 325 (444)
... +.-..-...+.+.+. ..+.++-|++||.++...... -..+...|.+ .-.=|.|+
T Consensus 395 ----HRR-TYIGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 395 ----HRR-TYIGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ----ccc-cccccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 000 000111112222222 235678899999996632110 0112222211 11113343
Q ss_pred -EecCC-hH--HHhhcCCCCcccCCCCChHhHHHHHHHhh
Q 047559 326 -VTTRH-AH--VAATMEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 326 -vTTr~-~~--va~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
|||-+ -+ .+..+....++++.+-+++|=.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 34432 22 12334455789999999999888777665
No 145
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.55 E-value=0.0018 Score=65.85 Aligned_cols=204 Identities=17% Similarity=0.185 Sum_probs=102.5
Q ss_pred CcccccchhHHHHHHHH---hcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMV---LTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.+++|.+..+.++.+.+ ..... .+....+-+.++|++|+|||+||+.+++.... . ++.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~-----~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---P-----FFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---C-----eeeccH----H
Confidence 35788876665554433 22110 00123356899999999999999999876322 1 222221 1
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh----------hcHH----HhhcccC--CCCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY----------CLWE----DLKAPFL--AAAPN 321 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------~~~~----~l~~~l~--~~~~g 321 (444)
++. ..... .....+...+.......+.+|+|||++.... ..+. .+...+. ....+
T Consensus 123 ~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111 11100 0111222233333345678999999955210 1111 1222221 12334
Q ss_pred cEEEEecCChHHH-h-hcC---CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh-HHHHHHH
Q 047559 322 SKIIVTTRHAHVA-A-TME---PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP-LAAKTLG 395 (444)
Q Consensus 322 s~iivTTr~~~va-~-~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~ 395 (444)
..||.||...... . ... -...+.+...+.++-.++|....... .......+ ..+++.+.|.- --+..+.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~-~~~~~~~l----~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK-KLAPDVDL----KAVARRTPGFSGADLANLL 268 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC-CCCcchhH----HHHHHhCCCCCHHHHHHHH
Confidence 5666677654321 1 111 12468888888888888887765322 11111222 45778887743 3333332
Q ss_pred H---H--hc-CC---CHHHHHHHHhcc
Q 047559 396 G---L--LR-SK---RHDEWDEILNSN 413 (444)
Q Consensus 396 ~---~--L~-~~---~~~~w~~~l~~~ 413 (444)
. . .+ .+ +.+.+..+++..
T Consensus 269 ~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 269 NEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 2 1 11 11 566777766654
No 146
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.55 E-value=0.00057 Score=72.68 Aligned_cols=166 Identities=15% Similarity=0.239 Sum_probs=88.8
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
+...+|.++-++.|+++|............++.++|++|+||||+++.+..... . .| +-++.+...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~-~~---~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--R-KY---VRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--C-CE---EEEEcCCCCCHHHhccc
Confidence 456899999999999888642211112336899999999999999999987532 1 22 12333333333222111
Q ss_pred HHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhc----HHHhhcccCC---------------CCCCcE
Q 047559 263 LLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCL----WEDLKAPFLA---------------AAPNSK 323 (444)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~ 323 (444)
- +...+. ....+...+.. ....+-+|+||+++...... ...+...+.+ .....-
T Consensus 395 ~-~~~~g~-----~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 R-RTYIGS-----MPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred h-hccCCC-----CCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 1 001000 11122222322 22234578999996653321 1233333221 112333
Q ss_pred EEEecCChHHHh-hcCCCCcccCCCCChHhHHHHHHHhh
Q 047559 324 IIVTTRHAHVAA-TMEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 324 iivTTr~~~va~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
+|.|+....+.. ......++.+.+++.++-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444554332211 12233678999999999888877765
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.54 E-value=0.00064 Score=73.49 Aligned_cols=138 Identities=18% Similarity=0.188 Sum_probs=78.2
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++|.+..++.+...+..... .......++.++|++|+|||++|+.+.....- .....+.++++.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~~~~~i~~d~s~~~~~~~-- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD---DEDAMVRIDMSEYMEKHS-- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC---CCCcEEEEechhhcccch--
Confidence 4689999999999988865321 11123467889999999999999999875311 112333444443222111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCc-eEEEEEeCCCCCChhcHHHhhcccCCC-----------CCCcEEEEec
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDGK-KLLLVLDDVWNEDYCLWEDLKAPFLAA-----------APNSKIIVTT 328 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTT 328 (444)
...+.+..++....++ ...+.+.+..+ ..+|+||++...++..++.|...+..+ -..+-||+||
T Consensus 640 ---~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 640 ---VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred ---HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 1122111111111110 11233333223 348999999888888888777766433 1234477777
Q ss_pred CC
Q 047559 329 RH 330 (444)
Q Consensus 329 r~ 330 (444)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 65
No 148
>PRK08181 transposase; Validated
Probab=97.53 E-value=0.00029 Score=65.06 Aligned_cols=101 Identities=21% Similarity=0.101 Sum_probs=54.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.-+.|+|++|+|||.||..+.+...- ....+.|++ ..+++..+...... ...... +. .+ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~------~~~L~~~l~~a~~~-----~~~~~~---l~-~l-~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTR------TTDLVQKLQVARRE-----LQLESA---IA-KL-DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeee------HHHHHHHHHHHHhC-----CcHHHH---HH-HH-hc
Confidence 45899999999999999999876421 222334554 34455544332211 112221 22 22 13
Q ss_pred eEEEEEeCCCCCChhcHH--HhhcccCCCCCCcEEEEecCCh
Q 047559 292 KLLLVLDDVWNEDYCLWE--DLKAPFLAAAPNSKIIVTTRHA 331 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTTr~~ 331 (444)
-=||||||+.......|. .+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 349999999654333332 2333333211223588888753
No 149
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.53 E-value=0.0003 Score=69.39 Aligned_cols=152 Identities=15% Similarity=0.241 Sum_probs=83.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH-
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL- 263 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i- 263 (444)
.++||++.++.+...+..+ .-|.|.|++|+|||+||+.+........ .|... -+..+ ++.+++..+
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~-~~~ft---tp~DLfG~l~ 87 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYL-MTRFS---TPEEVFGPLS 87 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHHhcccC-cceee-eeeec---CcHHhcCcHH
Confidence 4899999999999988765 3589999999999999999987532222 23211 01111 122322211
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCC---ceEEEEEeCCCCCChhcHHHhhcccCCC---------CCCcEEEEecCCh
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDG---KKLLLVLDDVWNEDYCLWEDLKAPFLAA---------APNSKIIVTTRHA 331 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~---------~~gs~iivTTr~~ 331 (444)
+...... ..+.....| .--++++|+++.........|...+... .-..++|+++.++
T Consensus 88 i~~~~~~-----------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKDE-----------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhhc-----------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 1111000 001111111 1128999999988776666666555221 1123566665553
Q ss_pred HHH------hhcCC-CCcccCCCCCh-HhHHHHHHHh
Q 047559 332 HVA------ATMEP-IQQYNLQCLSD-EDCWSLFMMH 360 (444)
Q Consensus 332 ~va------~~~~~-~~~~~l~~L~~-~~~~~lf~~~ 360 (444)
-.. ..... .-.+.++++++ ++-.+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 11111 13478899975 4447777653
No 150
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00029 Score=73.14 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=86.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCc----ceeEEEEeCCCCCHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKF----DVKAWVCVSDDFDVLNI 259 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f----~~~~wv~vs~~~~~~~~ 259 (444)
+.++||+.|+.++++.|.....++ -.++|.+|+|||+++.-++.+.-..+ -. +..++. .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN------PvLiGEpGVGKTAIvEGLA~rIv~g~-VP~~L~~~~i~s-----L----- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN------PVLVGEPGVGKTAIVEGLAQRIVNGD-VPESLKDKRIYS-----L----- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC------CeEecCCCCCHHHHHHHHHHHHhcCC-CCHHHcCCEEEE-----e-----
Confidence 358999999999999998766543 24689999999999877766531111 00 111111 0
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCC-----C----hhcHHHhhcccCCCCCCcEEEEecC
Q 047559 260 SRALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNE-----D----YCLWEDLKAPFLAAAPNSKIIVTTR 329 (444)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-----~----~~~~~~l~~~l~~~~~gs~iivTTr 329 (444)
++..-+.+. .-.-+.++....+.+.+ +.++.+|++|.++.. . .+.-+.|+.+| ..+.--+|-.||-
T Consensus 233 --D~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-ARGeL~~IGATT~ 308 (786)
T COG0542 233 --DLGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-ARGELRCIGATTL 308 (786)
T ss_pred --cHHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-hcCCeEEEEeccH
Confidence 111111111 11223344444444444 345899999999763 0 11112232222 2222334556665
Q ss_pred ChHHHh------hcCCCCcccCCCCChHhHHHHHHHh
Q 047559 330 HAHVAA------TMEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 330 ~~~va~------~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
++.--. .....+.+.+...+.+++..++...
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 543211 1134477889999999998887653
No 151
>PRK12377 putative replication protein; Provisional
Probab=97.52 E-value=0.00018 Score=65.55 Aligned_cols=101 Identities=23% Similarity=0.145 Sum_probs=57.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.|+|.+|+|||+||..+.+.... ....+++++++ +++..+-...... .... .+.+.+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~----~~l~~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTVP------DVMSRLHESYDNG----QSGE----KFLQEL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEHH------HHHHHHHHHHhcc----chHH----HHHHHh-cC
Confidence 57899999999999999999987542 22334566543 4444443333211 1111 122223 34
Q ss_pred eEEEEEeCCCCCChhcHHH--hhcccCCC-CCCcEEEEecCC
Q 047559 292 KLLLVLDDVWNEDYCLWED--LKAPFLAA-APNSKIIVTTRH 330 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTr~ 330 (444)
--||||||+.......|.. +...+... .+.-.+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999995544344543 33333221 223457888863
No 152
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0033 Score=60.14 Aligned_cols=92 Identities=14% Similarity=0.261 Sum_probs=63.9
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHHH-hhcCCCCcccCCCCChHhHHHHHHHhhccCCCC
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHVA-ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDI 367 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~va-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 367 (444)
+++=++|+|+++..+...++.+...+.....++.+|++|.+ +.+. ...+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----C
Confidence 44558889999988888899998888877777777766665 3333 223334678999999999998886541 1
Q ss_pred CccchHHHHHHHHHHHcCCChHHHHH
Q 047559 368 TAQQISDLFREKVVGKCGGLPLAAKT 393 (444)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~G~Plai~~ 393 (444)
. + . ..++..++|.|+....
T Consensus 206 ~--~-~----~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 206 A--D-A----DALLAEAGGAPLAALA 224 (342)
T ss_pred C--h-H----HHHHHHcCCCHHHHHH
Confidence 1 1 1 2356778999975543
No 153
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.50 E-value=0.0043 Score=59.48 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccc-cCCc---ceeEEEEeCCCCCHHHHHHHHHHH
Q 047559 191 QDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE-DSKF---DVKAWVCVSDDFDVLNISRALLES 266 (444)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f---~~~~wv~vs~~~~~~~~~~~il~~ 266 (444)
.-.+.|.+.+..... ....+|+|.|.=|+|||++.+.+.+..... ...+ ..-+|-.-..+.-...++..|..+
T Consensus 3 ~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 3 PYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred HHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 345566676665432 345899999999999999999998765433 0011 222344443333344555555554
Q ss_pred h
Q 047559 267 I 267 (444)
Q Consensus 267 l 267 (444)
+
T Consensus 80 l 80 (325)
T PF07693_consen 80 L 80 (325)
T ss_pred H
Confidence 4
No 154
>PRK04132 replication factor C small subunit; Provisional
Probab=97.50 E-value=0.003 Score=67.02 Aligned_cols=158 Identities=12% Similarity=-0.029 Sum_probs=96.6
Q ss_pred cCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEe
Q 047559 219 MAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLD 298 (444)
Q Consensus 219 ~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 298 (444)
|.++||||+|..++++.--.+ .-...+-++.|+..... .+++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGEN-WRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 678999999999998731111 11235566777644443 334444333211110 01245799999
Q ss_pred CCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HHhh-cCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHH
Q 047559 299 DVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VAAT-MEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLF 376 (444)
Q Consensus 299 dv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 376 (444)
+++..+....+.|...+......+++|++|.+.. +... .+....+++.+++.++....+...+...+-..+ ++.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 9999887788888888776556677777666543 2222 223367899999999988877765432111111 234
Q ss_pred HHHHHHHcCCChHHHHHHHH
Q 047559 377 REKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 377 ~~~i~~~~~G~Plai~~~~~ 396 (444)
...|++.|+|.+-.+..+..
T Consensus 714 L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 714 LQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 56799999998855544433
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.49 E-value=0.00048 Score=74.02 Aligned_cols=139 Identities=19% Similarity=0.146 Sum_probs=76.7
Q ss_pred CCcccccchhHHHHHHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNI 259 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 259 (444)
...++|.+.-++.+.+.+..... .......++.++|++|+|||.||+.+....-- .....+-++++.-.+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~---~~~~~~~~dmse~~~---- 637 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG---GEQNLITINMSEFQE---- 637 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC---CCcceEEEeHHHhhh----
Confidence 35689999999999888754211 11144568999999999999999988765211 111222222222111
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHhC-CceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEe
Q 047559 260 SRALLESITFASCDLKALNEVQVQIKRAVD-GKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVT 327 (444)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 327 (444)
..-...+.+..+.-....+ ...|.+.++ ...-+|+||++...++..++.|...+..+. ..+-||+|
T Consensus 638 -~~~~~~l~g~~~gyvg~~~-~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 638 -AHTVSRLKGSPPGYVGYGE-GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred -hhhhccccCCCCCcccccc-cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 0111122222211111000 011233332 445699999998877777777766654432 44667777
Q ss_pred cCC
Q 047559 328 TRH 330 (444)
Q Consensus 328 Tr~ 330 (444)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 156
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.0008 Score=64.46 Aligned_cols=126 Identities=18% Similarity=0.161 Sum_probs=77.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC------------------CcceeE
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS------------------KFDVKA 246 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~ 246 (444)
.++|-+.....+..+....... ...+.++|++|+||||+|..+.+..--... ..+...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~----~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRL----PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCC----CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 3567777888888887754321 135999999999999999988875321100 012233
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcE
Q 047559 247 WVCVSDDFD---VLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSK 323 (444)
Q Consensus 247 wv~vs~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 323 (444)
.++-+.... ..+..+.+.+....... .++.-++++|+++..+...-+.+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 333333322 22223333322221110 25677999999988777667777777777777888
Q ss_pred EEEecCC
Q 047559 324 IIVTTRH 330 (444)
Q Consensus 324 iivTTr~ 330 (444)
+|++|..
T Consensus 142 ~il~~n~ 148 (325)
T COG0470 142 FILITND 148 (325)
T ss_pred EEEEcCC
Confidence 8888874
No 157
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.43 E-value=0.00037 Score=61.29 Aligned_cols=131 Identities=19% Similarity=0.214 Sum_probs=63.8
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC----C--CCHHH---
Q 047559 188 GRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD----D--FDVLN--- 258 (444)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~----~--~~~~~--- 258 (444)
.+..+-...++.|... .++.+.|++|.|||.||....-+.-..+ .|+..+++.-.- . |-+.+
T Consensus 4 p~~~~Q~~~~~al~~~--------~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN--------DLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS------
T ss_pred CCCHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHH
Confidence 3455566677777622 5899999999999999988775543333 788877764211 1 11111
Q ss_pred ----HHHHHHHHhccCCCCcccHHHHHHH------HHHHhCCc---eEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEE
Q 047559 259 ----ISRALLESITFASCDLKALNEVQVQ------IKRAVDGK---KLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKII 325 (444)
Q Consensus 259 ----~~~~il~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 325 (444)
.+..+...+..-. .....+.+... -..+++|+ ..+||+|++.+....++..+... -+.||++|
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEE
Confidence 1111111111100 11112221110 01244565 46999999988877777766544 46799999
Q ss_pred EecCCh
Q 047559 326 VTTRHA 331 (444)
Q Consensus 326 vTTr~~ 331 (444)
++--..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 987643
No 158
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.42 E-value=0.0045 Score=62.80 Aligned_cols=207 Identities=14% Similarity=0.094 Sum_probs=121.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccc---ccc--CCcceeEEEEeCCCCCHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRA---VED--SKFDVKAWVCVSDDFDVLN 258 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~--~~f~~~~wv~vs~~~~~~~ 258 (444)
..+-+|+.|..+|-.++...-.. +..-+.+-|.|-+|+|||..+..|.+... ..+ ..|+ .+.|+.-.-..+.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34668999999998877553222 12335999999999999999999987432 111 1233 24455444556889
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhcHHHhhcccCC-CCCCcEEEEecCCh-
Q 047559 259 ISRALLESITFASCDLKALNEVQVQIKRAV-----DGKKLLLVLDDVWNEDYCLWEDLKAPFLA-AAPNSKIIVTTRHA- 331 (444)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTr~~- 331 (444)
++..|..++.+.... -......|..+. ..+..++++|+++..-....+.+...|.+ ..++|+++|-+=..
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999999765432 122223333333 23468888898844311112233344443 46778776654211
Q ss_pred -HH-HhhcC-------CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 332 -HV-AATME-------PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 332 -~v-a~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
+. ...+. ....+...+-+..+-.++...+..+. +.......+-++++|+.-.|-.-.|+...-+
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 11 11111 12346677778888877777766443 3334455666667777666665555554443
No 159
>PRK06526 transposase; Provisional
Probab=97.41 E-value=0.00037 Score=63.94 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=52.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.-+.|+|++|+|||+||..+.......+ +. +.|+ +..+++..+...... .. ....+..+ .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g--~~-v~f~------t~~~l~~~l~~~~~~-----~~---~~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAG--HR-VLFA------TAAQWVARLAAAHHA-----GR---LQAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCC--Cc-hhhh------hHHHHHHHHHHHHhc-----Cc---HHHHHHHh--cc
Confidence 4689999999999999999887643221 22 2232 233444444332111 11 11223222 23
Q ss_pred eEEEEEeCCCCCChhcHH--HhhcccCC-CCCCcEEEEecCCh
Q 047559 292 KLLLVLDDVWNEDYCLWE--DLKAPFLA-AAPNSKIIVTTRHA 331 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTTr~~ 331 (444)
.-||||||+.......|. .+...+.. ...++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999654322222 23232222 12344 88888743
No 160
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.38 E-value=0.00069 Score=69.15 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=35.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.++|.+..+..+...+.... ...+.|+|++|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999888765432 246789999999999999999864
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.37 E-value=0.00091 Score=72.12 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=77.0
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++|.+.-++.+...+..... ....+...+.++|+.|+|||+||+.+.+..-- .-...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~---~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG---SEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC---CccceEEEEchhccccccH-
Confidence 5689999999999887753211 11133456789999999999999998865210 1122333344332111111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCce-EEEEEeCCCCCChhcHHHhhcccCCC-----------CCCcEEEEec
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDGKK-LLLVLDDVWNEDYCLWEDLKAPFLAA-----------APNSKIIVTT 328 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTT 328 (444)
..+.+..+.....++ ...+.+.+..++ -+|+||++...++..++.|...+..+ ...+-||+||
T Consensus 585 ----~~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 585 ----SKLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred ----HHhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 111111111111100 112344454454 58999999888877788777766542 1345567776
Q ss_pred CC
Q 047559 329 RH 330 (444)
Q Consensus 329 r~ 330 (444)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 64
No 162
>PRK06921 hypothetical protein; Provisional
Probab=97.36 E-value=0.00087 Score=62.06 Aligned_cols=99 Identities=16% Similarity=0.235 Sum_probs=54.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.++|..|+|||+||..+++....+ ....+++++. .+++..+...+ +.....+. .+ .+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~--~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~-~~-~~ 177 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRK--KGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLN-RM-KK 177 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhh--cCceEEEEEH------HHHHHHHHHHH----------HHHHHHHH-Hh-cC
Confidence 578999999999999999999874322 1234556653 23333332221 11111222 22 23
Q ss_pred eEEEEEeCCCC-----CChhcHHH--hhcccCCC-CCCcEEEEecCC
Q 047559 292 KLLLVLDDVWN-----EDYCLWED--LKAPFLAA-APNSKIIVTTRH 330 (444)
Q Consensus 292 r~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~iivTTr~ 330 (444)
-=||||||+.. .....|.. +...+... ..+..+||||..
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 45999999932 22234543 33333221 234567888873
No 163
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00074 Score=68.40 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=90.0
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
+.+.+|.++-+++|++++.-..-.+..+-++++.+|++|+|||++|+.++.... + .| +-++++.-.|..++-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn-R--kF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN-R--KF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC-C--ce---EEEeccccccHHhhccc
Confidence 456789999999999988653322224458999999999999999999987642 2 22 23455555554443111
Q ss_pred HHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh----------------hcHHHhhcccCC-CCCCcEEE
Q 047559 263 LLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY----------------CLWEDLKAPFLA-AAPNSKII 325 (444)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~l~~~l~~-~~~gs~ii 325 (444)
- .+.-..-...+++.|+ ..+..+-|+.||.|+..-. ++-..+...+.+ .-.=|+|+
T Consensus 484 R------RTYVGAMPGkiIq~LK-~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 R------RTYVGAMPGKIIQCLK-KVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred c------eeeeccCChHHHHHHH-hhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 0 0001111122222222 2345677999999965311 111111111111 11235665
Q ss_pred EecCChHHH----hhcCCCCcccCCCCChHhHHHHHHHhh
Q 047559 326 VTTRHAHVA----ATMEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 326 vTTr~~~va----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
+...-..+. .......+|+|.+...+|-..+-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 432221111 112233678888888887776665554
No 164
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.35 E-value=0.00038 Score=60.33 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=51.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.-+.|+|.+|+|||.||..+.+..... .+ .+.|++ ..+++..+-. ... ....... +. .+. +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~--g~-~v~f~~------~~~L~~~l~~----~~~-~~~~~~~---~~-~l~-~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK--GY-SVLFIT------ASDLLDELKQ----SRS-DGSYEEL---LK-RLK-R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T---EEEEE------HHHHHHHHHC----CHC-CTTHCHH---HH-HHH-T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC--Cc-ceeEee------cCceeccccc----ccc-ccchhhh---cC-ccc-c
Confidence 569999999999999999998765332 22 345554 3344444322 111 1112222 22 222 2
Q ss_pred eEEEEEeCCCCCChhcHHH--hhcccCCC-CCCcEEEEecCC
Q 047559 292 KLLLVLDDVWNEDYCLWED--LKAPFLAA-APNSKIIVTTRH 330 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTr~ 330 (444)
-=||||||+-......|.. +...+... .++ .+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 3478899997655444443 22222111 223 58888874
No 165
>PRK09183 transposase/IS protein; Provisional
Probab=97.34 E-value=0.00087 Score=61.86 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=51.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.|+|++|+|||+||..+....... .. .+.+++ ..++...+...... .. +...+...+ .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~--G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA--GI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc--CC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cC
Confidence 467899999999999999997653222 12 223333 23333333222111 01 112222222 34
Q ss_pred eEEEEEeCCCCCChhcHH--HhhcccCCC-CCCcEEEEecCC
Q 047559 292 KLLLVLDDVWNEDYCLWE--DLKAPFLAA-APNSKIIVTTRH 330 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTTr~ 330 (444)
.-++|+||+.......+. .+...+... ..++ +|+||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 459999999754333332 233333221 2344 8888874
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00091 Score=70.66 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=68.8
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+..... . ..+.++++.-.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~----~~i~id~se~~~~~~-- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I----ELLRFDMSEYMERHT-- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C----CcEEeechhhccccc--
Confidence 3589999999988887763211 1113456789999999999999999987641 1 223444443221111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCC-ceEEEEEeCCCCCChhcHHHhhcccC
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDG-KKLLLVLDDVWNEDYCLWEDLKAPFL 316 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~ 316 (444)
...+.+..+.....+ ....+.+.+.. ...+|+||++...+...++.+...+.
T Consensus 530 ---~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 ---VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred ---HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 122222211111000 01123333333 34699999998887777777766554
No 167
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.33 E-value=0.00022 Score=67.75 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=43.1
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...++|.++.++++++++.....+....-+++.|+|++|+||||||+.+.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44799999999999999876433222445899999999999999999998764
No 168
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0016 Score=60.06 Aligned_cols=140 Identities=13% Similarity=0.170 Sum_probs=75.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccC-CcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDS-KFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
++|.++|++|.|||+|.+.+++...++-. .+....-+-++. ..++..-.+. ..+....+.++|++.+.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHhC
Confidence 79999999999999999999998755430 233333333332 2222222211 123455667778888876
Q ss_pred ce--EEEEEeCCCCCCh------------hc---HHHhhcccCC-CCCCcEEEEecCCh----HHHhhcCCCCcccCCCC
Q 047559 291 KK--LLLVLDDVWNEDY------------CL---WEDLKAPFLA-AAPNSKIIVTTRHA----HVAATMEPIQQYNLQCL 348 (444)
Q Consensus 291 kr--~LlVlDdv~~~~~------------~~---~~~l~~~l~~-~~~gs~iivTTr~~----~va~~~~~~~~~~l~~L 348 (444)
+. +++.+|+|.+... +. .+.+...+.. ......+|+||.+- ++|-.-.+.-+..+++.
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~P 327 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPP 327 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCc
Confidence 65 4556899855210 00 1111111211 11223455566542 23333233344567777
Q ss_pred ChHhHHHHHHHhh
Q 047559 349 SDEDCWSLFMMHA 361 (444)
Q Consensus 349 ~~~~~~~lf~~~~ 361 (444)
+...-.++++.+.
T Consensus 328 t~~ai~~Ilksci 340 (423)
T KOG0744|consen 328 TAEAIYEILKSCI 340 (423)
T ss_pred cHHHHHHHHHHHH
Confidence 7776666666543
No 169
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.31 E-value=0.0014 Score=58.50 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=53.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHh-c---cC-----CCCcccHHH
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESI-T---FA-----SCDLKALNE 279 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l-~---~~-----~~~~~~~~~ 279 (444)
+.-.++.|+|++|+|||+++.++..... . ....++|++... ++...+.+ +.... . .. ..+..+...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~--~-~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA--R-QGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--h-CCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHH
Confidence 3448999999999999999999876532 2 346788998875 55554443 32221 0 00 011122223
Q ss_pred HHHHHHHHhCC-ceEEEEEeCCC
Q 047559 280 VQVQIKRAVDG-KKLLLVLDDVW 301 (444)
Q Consensus 280 ~~~~l~~~l~~-kr~LlVlDdv~ 301 (444)
....+.+.+.. +.-+||+|.+.
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcH
Confidence 34555555533 45689999984
No 170
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0045 Score=59.00 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=46.4
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HHhhc-CCCCcccCCCCChHhHHHHHHHh
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VAATM-EPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va~~~-~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
+++=++|+|++...+...-+.+...+.....++.+|++|.+.. +...+ +....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344556688887776666667666655445666777777644 33222 22367889999999998887653
No 171
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.31 E-value=0.0016 Score=59.25 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=57.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.++|.+|+|||+||..+.+..... -..+++++ ..+++..+-...... ..... .+.+.+. +
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it------~~~l~~~l~~~~~~~---~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIIT------VADIMSAMKDTFSNS---ETSEE----QLLNDLS-N 162 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEE------HHHHHHHHHHHHhhc---cccHH----HHHHHhc-c
Confidence 578999999999999999999875322 22344553 344544444333210 11111 2223343 3
Q ss_pred eEEEEEeCCCCCChhcHHH--hhcccCC-CCCCcEEEEecCC
Q 047559 292 KLLLVLDDVWNEDYCLWED--LKAPFLA-AAPNSKIIVTTRH 330 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTTr~ 330 (444)
.=||||||+.......|.. +...+.. ....-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488899997765556664 2222221 1223457777763
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0034 Score=55.53 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=64.4
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
-..++|-+...+.+++....--.+ ....-|.+||-.|+|||+|++.+.+...-+. -. -|-|.+
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g---lr--LVEV~k---------- 121 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEG--LPANNVLLWGARGTGKSSLVKALLNEYADEG---LR--LVEVDK---------- 121 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcC--CcccceEEecCCCCChHHHHHHHHHHHHhcC---Ce--EEEEcH----------
Confidence 346899888888887643321111 2224689999999999999999998753322 11 222222
Q ss_pred HHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCC
Q 047559 263 LLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLA 317 (444)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~ 317 (444)
.+..++..+...|+. ...||+|..||+.- .....+..++..+..
T Consensus 122 ---------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 122 ---------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ---------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 111222222222222 46799999999943 334567888887754
No 173
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.00064 Score=59.71 Aligned_cols=113 Identities=12% Similarity=-0.041 Sum_probs=61.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCC--cccHHHHHHHHHHHhC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCD--LKALNEVQVQIKRAVD 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~ 289 (444)
.++.|+|+.|.||||++..+..+.... ...++.+. ..++.......+.+.++..... .....++...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 578999999999999998888764322 22222231 1112222233344444322111 1233444444444 33
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
++.-+||+|.+...+..+..++...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34458999999654333233333332 245788999998744
No 174
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.29 E-value=0.0021 Score=58.54 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=55.7
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEEEEeCCCCCHHHHHHHHHHHhccCC------------CCc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAWVCVSDDFDVLNISRALLESITFAS------------CDL 274 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~------------~~~ 274 (444)
.-.++.|+|.+|+|||+|+.+++-...... +....++|++....++...+. ++++...... ...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 347999999999999999999874422211 013678999988877655443 3333322211 011
Q ss_pred ccHHHHHHHHHHHh-CC-ceEEEEEeCCCC
Q 047559 275 KALNEVQVQIKRAV-DG-KKLLLVLDDVWN 302 (444)
Q Consensus 275 ~~~~~~~~~l~~~l-~~-kr~LlVlDdv~~ 302 (444)
.+.......+.+.+ +. +.-|||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 22233344455555 33 567999999943
No 175
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.29 E-value=0.0034 Score=53.59 Aligned_cols=123 Identities=23% Similarity=0.320 Sum_probs=72.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEE---------------------eCCCC----------------
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVC---------------------VSDDF---------------- 254 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------vs~~~---------------- 254 (444)
..+.|+|++|.|||||.+.+|...+... +.+|+. |-+++
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~----G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTR----GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCC----ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 5899999999999999999998765332 455553 11111
Q ss_pred -----CHHHHHHH---HHHHhccCC------CCcccHHHHHHHHHHHhCCceEEEEEeCCC-CCCh-hcHHHhhcccCCC
Q 047559 255 -----DVLNISRA---LLESITFAS------CDLKALNEVQVQIKRAVDGKKLLLVLDDVW-NEDY-CLWEDLKAPFLAA 318 (444)
Q Consensus 255 -----~~~~~~~~---il~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~-~~~~-~~~~~l~~~l~~~ 318 (444)
...++-+. .+..++... .+.+.-++..-.|.+.+-+++-+|+-|+-- +.|+ ..|+.+.-.-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 01111111 122221110 112223444455777777888889988762 2222 3466544333336
Q ss_pred CCCcEEEEecCChHHHhhcC
Q 047559 319 APNSKIIVTTRHAHVAATME 338 (444)
Q Consensus 319 ~~gs~iivTTr~~~va~~~~ 338 (444)
..|..||++|.+..+.+.+.
T Consensus 185 r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 185 RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hcCcEEEEEeccHHHHHhcc
Confidence 78999999999988876653
No 176
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.29 E-value=0.0012 Score=62.28 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=69.7
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHh
Q 047559 188 GRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESI 267 (444)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l 267 (444)
++..-.....+++..-... ...+-+.|+|..|+|||.||..+++..... .+ .+.++++ .+++..+...+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~--~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~-~v~~~~~------~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG--EKVKGLYLYGDFGVGKSYLLAAIANELAKK--GV-SSTLLHF------PEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CC-CEEEEEH------HHHHHHHHHHH
Confidence 3444444455555432111 233679999999999999999999886422 22 3445544 34555555444
Q ss_pred ccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHH--hhccc-CCC-CCCcEEEEecC
Q 047559 268 TFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWED--LKAPF-LAA-APNSKIIVTTR 329 (444)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTTr 329 (444)
... +.. ..+.. + .+-=||||||+.......|.. +...+ ... ..+-.+|+||.
T Consensus 204 ~~~-----~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 204 SDG-----SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred hcC-----cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 321 111 22222 2 245589999997766667753 44443 222 24566888887
No 177
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.28 E-value=0.002 Score=58.34 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=52.1
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHH--------hccCC-CCcccHHHH
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLES--------ITFAS-CDLKALNEV 280 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~--------l~~~~-~~~~~~~~~ 280 (444)
.-.++.|+|.+|+|||++|.+++.... . ....++|++.. .++...+. ++... +.... .......+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~--~-~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA--K-NGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--H-CCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 347999999999999999999886542 2 34567899877 55554432 23222 11000 011122223
Q ss_pred HHHHHHHhCCceEEEEEeCCC
Q 047559 281 QVQIKRAVDGKKLLLVLDDVW 301 (444)
Q Consensus 281 ~~~l~~~l~~kr~LlVlDdv~ 301 (444)
...+...+..+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 344444444566799999983
No 178
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.26 E-value=0.017 Score=55.95 Aligned_cols=208 Identities=13% Similarity=0.186 Sum_probs=117.0
Q ss_pred cchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHH-HHHhhccccccCCcceeEEEEeCCC---CCHHHHHHHHH
Q 047559 189 RQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLA-REVYNDRAVEDSKFDVKAWVCVSDD---FDVLNISRALL 264 (444)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~vs~~---~~~~~~~~~il 264 (444)
|.+..++|..||..... ..|.|.||-|+||+.|+ .++..+.+ .+..++|.+- -+-..++..+.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~-------~vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK-------NVLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC-------CEEEEEChHhhhccChHHHHHHHH
Confidence 56778899999976533 69999999999999999 77766522 1334443321 12233334443
Q ss_pred HHhcc-----------------------CCCC-cccHHH-HHHH-------HHH-------------------Hh---CC
Q 047559 265 ESITF-----------------------ASCD-LKALNE-VQVQ-------IKR-------------------AV---DG 290 (444)
Q Consensus 265 ~~l~~-----------------------~~~~-~~~~~~-~~~~-------l~~-------------------~l---~~ 290 (444)
.+++- ...+ ..+.+. +... |+. +| ..
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 33321 1111 111111 1111 111 11 12
Q ss_pred ceEEEEEeCCCCCCh---hcHHHhh---cccCCCCCCcEEEEecCChHHHhhc------CCCCcccCCCCChHhHHHHHH
Q 047559 291 KKLLLVLDDVWNEDY---CLWEDLK---APFLAAAPNSKIIVTTRHAHVAATM------EPIQQYNLQCLSDEDCWSLFM 358 (444)
Q Consensus 291 kr~LlVlDdv~~~~~---~~~~~l~---~~l~~~~~gs~iivTTr~~~va~~~------~~~~~~~l~~L~~~~~~~lf~ 358 (444)
++-+||+|+.-.... ..|+.|. ..+.. .+-..||++|-+......+ ...+.+.|...+++.|..+..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 367999999854321 1122211 22222 2344678777766554432 234668899999999999999
Q ss_pred HhhccCCCC------------Cc-----cchHHHHHHHHHHHcCCChHHHHHHHHHhcCC-CH-HHHHHHHh
Q 047559 359 MHAFVGQDI------------TA-----QQISDLFREKVVGKCGGLPLAAKTLGGLLRSK-RH-DEWDEILN 411 (444)
Q Consensus 359 ~~~~~~~~~------------~~-----~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~-~~-~~w~~~l~ 411 (444)
.+.-..... .. .....+ ....++.+||==.-+..+++.++.. ++ +...++.+
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-ld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAE-LDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHH-HHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 887432110 00 112333 3558889999999999999999887 43 33444433
No 179
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.22 E-value=0.0046 Score=62.09 Aligned_cols=180 Identities=13% Similarity=0.073 Sum_probs=88.8
Q ss_pred CcccccchhHHHHHHHHhc---C-CCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLT---D-TSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNI 259 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 259 (444)
.++.|.+..++.+...... . ...+....+-|.++|++|+|||.+|+.+.+.... .| +-++++. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~---~~---~~l~~~~------l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL---PL---LRLDVGK------L 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CE---EEEEhHH------h
Confidence 3577776666555442111 0 0001133467999999999999999999886432 11 1122111 1
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-------h-c----HHHhhcccCCCCCCcEEEEe
Q 047559 260 SRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY-------C-L----WEDLKAPFLAAAPNSKIIVT 327 (444)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~-~----~~~l~~~l~~~~~gs~iivT 327 (444)
+ .... ..+...+...+...-...+++|++|+++..-. . . ...+...+.....+.-||.|
T Consensus 296 ~----~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 F----GGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred c----cccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1 0000 01111111222222234689999999964210 0 0 11122222223344456667
Q ss_pred cCChHHH-hh-cC---CCCcccCCCCChHhHHHHHHHhhccCCCC-CccchHHHHHHHHHHHcCCCh
Q 047559 328 TRHAHVA-AT-ME---PIQQYNLQCLSDEDCWSLFMMHAFVGQDI-TAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 328 Tr~~~va-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~P 388 (444)
|.+..-. .. .. -...+.+...+.++-.++|..+....... ....++ ..+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl----~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI----KKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH----HHHHhhcCCCC
Confidence 7654321 11 11 12457888888899899988776332111 112223 44666776653
No 180
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.22 E-value=0.0035 Score=55.80 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCC--CCCCcEEEEecCChHHHhhc
Q 047559 278 NEVQVQIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLA--AAPNSKIIVTTRHAHVAATM 337 (444)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~iivTTr~~~va~~~ 337 (444)
++..-.+.+.|-..+-+|+.|+--. .|...=+.+...+.. ...|..||+.|.++.+|..+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 3444567778888888999998622 222222333333332 24588899999999999865
No 181
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.21 E-value=0.00027 Score=57.05 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998864
No 182
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.20 E-value=0.0062 Score=65.11 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=91.5
Q ss_pred CcccccchhHHHHHHHHhcCCCC-------CCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSS-------DHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
.++.|.+..++.|.+.+.-.-.. +....+-+.++|++|+|||+||+.+.+.... .| +.++.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~---~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA---NF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE-----EEEeh----
Confidence 34678777777776654321000 0123356889999999999999999987421 22 22221
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-------h-----cHHHhhcccCC--CCCCc
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY-------C-----LWEDLKAPFLA--AAPNS 322 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~-----~~~~l~~~l~~--~~~gs 322 (444)
.++ +....+ .....+...+...-...+.+|+||+++.... . ....+...+.. ...+.
T Consensus 521 ~~l----~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 PEI----LSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HHH----hhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111 111110 1111112222222245678999999854210 0 11223333321 22345
Q ss_pred EEEEecCChHHHh--hcC---CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 323 KIIVTTRHAHVAA--TME---PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 323 ~iivTTr~~~va~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
-||.||....... ... -...+.+...+.++-.++|..+.-. .......++ ..+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCccCCH----HHHHHHcCCCC
Confidence 5666776554332 122 1245788888888888888765422 111222233 34667777754
No 183
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.19 E-value=0.0013 Score=66.89 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=58.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAV 288 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 288 (444)
+.-+++.+.|++|+||||||+.++.+.. --++=|+.|+.-+...+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG------YsVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG------YSVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC------ceEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 6678999999999999999999998732 23466788887777766666655554322 12
Q ss_pred --CCceEEEEEeCCCCCChhcHHHhh
Q 047559 289 --DGKKLLLVLDDVWNEDYCLWEDLK 312 (444)
Q Consensus 289 --~~kr~LlVlDdv~~~~~~~~~~l~ 312 (444)
.+++..||+|+++-......+.|.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvil 408 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVIL 408 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHH
Confidence 267888999999776533334333
No 184
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.18 E-value=0.0078 Score=57.63 Aligned_cols=131 Identities=14% Similarity=0.055 Sum_probs=67.4
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 047559 186 VFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLE 265 (444)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~ 265 (444)
++|....+.++.+.+..-... -..|.|+|..|+||+++|+.++....... ...+-|+++.-. .+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----~~pVLI~GE~GtGK~~lAr~iH~~s~r~~---~pfv~vnc~~~~--~~~l~~~-- 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----DRPVLIIGERGTGKELIAARLHYLSKRWQ---GPLVKLNCAALS--ENLLDSE-- 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----CCCEEEECCCCChHHHHHHHHHHhcCccC---CCeEEEeCCCCC--hHHHHHH--
Confidence 356666667776666543321 25689999999999999999986532111 122344444321 2222221
Q ss_pred HhccCCCCc-ccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEecCC
Q 047559 266 SITFASCDL-KALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTTRH 330 (444)
Q Consensus 266 ~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTr~ 330 (444)
+.+..... ..... ......-....-.|+||++..........|...+.... ...+||.||..
T Consensus 70 -lfG~~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 70 -LFGHEAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred -HhccccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 11111000 00000 00000111234568999998776665666666553321 23588887754
No 185
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.17 E-value=0.00034 Score=58.00 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=61.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 047559 187 FGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLES 266 (444)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~ 266 (444)
||.-..+.++.+.+..-.. ....|.|.|..|+||+++|+.++.........|... .+.. .+
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----------
Confidence 3555556666655544221 125789999999999999999887643221122110 1111 00
Q ss_pred hccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCC-CCCCcEEEEecCC
Q 047559 267 ITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLA-AAPNSKIIVTTRH 330 (444)
Q Consensus 267 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTr~ 330 (444)
.+.+.. -+.--|+|+|+...+......+...+.. .....|+|.||..
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111111 1445678999988776666667666653 2567899999884
No 186
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.17 E-value=0.0037 Score=56.54 Aligned_cols=92 Identities=15% Similarity=0.132 Sum_probs=54.6
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEEEEeCCCCCHHHHHHHHHHHhccCC---------CCcccH
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAWVCVSDDFDVLNISRALLESITFAS---------CDLKAL 277 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~---------~~~~~~ 277 (444)
.-.++.|+|.+|+|||+|+.++........ +.-..++|++....++...+. .+........ ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 347999999999999999999875531110 011567899887777765443 3333322110 012334
Q ss_pred HHHHHHHHHHhC----CceEEEEEeCCCC
Q 047559 278 NEVQVQIKRAVD----GKKLLLVLDDVWN 302 (444)
Q Consensus 278 ~~~~~~l~~~l~----~kr~LlVlDdv~~ 302 (444)
+++...+..... .+.-|||+|.+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 455555544432 3445999999843
No 187
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0017 Score=64.66 Aligned_cols=99 Identities=14% Similarity=0.237 Sum_probs=62.4
Q ss_pred CcccccchhHHHHHHHHhcCCC------CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS------SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.++-|.+..+.++.+++..-.. -+-...+-|.++|++|.|||.||+.+.+...+. +++++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--------f~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--------FLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--------eEeecch----
Confidence 4578889888888887755211 111345789999999999999999999986543 3344332
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNE 303 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 303 (444)
+|++.+.+. +.+.+.+...+....-++++++|+++-.
T Consensus 258 ----eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 233333321 1222222333334567899999999653
No 188
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.14 E-value=0.0019 Score=55.38 Aligned_cols=128 Identities=17% Similarity=0.144 Sum_probs=64.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 047559 186 VFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLE 265 (444)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~ 265 (444)
++|....+.++++.+..-... + ..|.|+|..|+||+.+|+.+++..... -...+-|+++. .+.+.+- .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~---~-~pVlI~GE~GtGK~~lA~~IH~~s~r~---~~pfi~vnc~~-~~~~~~e----~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS---D-LPVLITGETGTGKELLARAIHNNSPRK---NGPFISVNCAA-LPEELLE----S 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS---T-S-EEEECSTTSSHHHHHHHHHHCSTTT---TS-EEEEETTT-S-HHHHH----H
T ss_pred CEeCCHHHHHHHHHHHHHhCC---C-CCEEEEcCCCCcHHHHHHHHHHhhhcc---cCCeEEEehhh-hhcchhh----h
Confidence 467777788887776553321 1 567799999999999999999863211 12223344443 2222222 2
Q ss_pred HhccCCCC----c-ccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCC-----------CCCcEEEEecC
Q 047559 266 SITFASCD----L-KALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAA-----------APNSKIIVTTR 329 (444)
Q Consensus 266 ~l~~~~~~----~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTTr 329 (444)
.+.+.... . ..... .+.. -..=-|+||++..........|...+..+ ....|||.||.
T Consensus 69 ~LFG~~~~~~~~~~~~~~G---~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKG---LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS 142 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEH---HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES
T ss_pred hhhccccccccccccccCC---ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecC
Confidence 22222111 0 00001 1111 23346788999877655555555444321 12568888887
Q ss_pred Ch
Q 047559 330 HA 331 (444)
Q Consensus 330 ~~ 331 (444)
.+
T Consensus 143 ~~ 144 (168)
T PF00158_consen 143 KD 144 (168)
T ss_dssp S-
T ss_pred cC
Confidence 53
No 189
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.13 E-value=0.0035 Score=56.38 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHh----ccC--CCCcccHHH---
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESI----TFA--SCDLKALNE--- 279 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l----~~~--~~~~~~~~~--- 279 (444)
+.-.++.|.|.+|+|||||+.+++.... . .-..++|++....+. +-++++.... ... ..+..+..+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~-~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA--G-QGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGR 91 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--h-cCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHH
Confidence 3348999999999999999999886642 1 234567887655543 3333333221 000 001122222
Q ss_pred HHHHHHHHhCCceEEEEEeCCC
Q 047559 280 VQVQIKRAVDGKKLLLVLDDVW 301 (444)
Q Consensus 280 ~~~~l~~~l~~kr~LlVlDdv~ 301 (444)
....+...+..+.-+||+|.+-
T Consensus 92 ~~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 92 AIQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHHHhcCCcEEEEechH
Confidence 2334444454445689999984
No 190
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.12 E-value=0.0048 Score=53.63 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=64.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC--CCCHHHHH------HHHHHHhccCC-----C-CcccH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD--DFDVLNIS------RALLESITFAS-----C-DLKAL 277 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~------~~il~~l~~~~-----~-~~~~~ 277 (444)
.+++|+|..|.|||||.+.+..... ...+.+++.-.+ ..+..... .++++.++... . ..+.-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 5899999999999999999987532 233444442111 11221211 11344433221 1 11122
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCCC-CC-CcEEEEecCChHHH
Q 047559 278 NEVQVQIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLAA-AP-NSKIIVTTRHAHVA 334 (444)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTTr~~~va 334 (444)
+...-.+...+-..+-++++|+.-. .+......+...+... .. +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2233345566667778999999843 2333344444444321 22 66788888876654
No 191
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0066 Score=58.50 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.6
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|+|+|++|+||||++..++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 34799999999999999999998654
No 192
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0038 Score=63.37 Aligned_cols=153 Identities=17% Similarity=0.055 Sum_probs=81.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC--CHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF--DVLNISRALLESITFASCDLKALNEVQVQIKRAVD 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 289 (444)
.-|.|.|+.|+|||+||+.+++... ++ +.-++..|+++.-. ..+.+.+ .+...+.+.+.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~-~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~~ 492 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KD-LIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEALW 492 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cc-cceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHHh
Confidence 5789999999999999999998865 43 55566677776521 1111111 11223344556
Q ss_pred CceEEEEEeCCCCCCh------hcHHH----hhccc-----CCCCCCcE--EEEecCChHHH-hhcCCC----CcccCCC
Q 047559 290 GKKLLLVLDDVWNEDY------CLWED----LKAPF-----LAAAPNSK--IIVTTRHAHVA-ATMEPI----QQYNLQC 347 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~------~~~~~----l~~~l-----~~~~~gs~--iivTTr~~~va-~~~~~~----~~~~l~~ 347 (444)
..+-+|||||++..-. .+|.. +...+ .....+.+ +|.|.....-. ..+... .+..|..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 7788999999964211 12221 11111 01233444 44444432211 111111 3467888
Q ss_pred CChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC
Q 047559 348 LSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL 387 (444)
Q Consensus 348 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (444)
+...+-.+++++..-.........+++ -+..+|+|.
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~~~dLd----~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDITMDDLD----FLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhhhHHHH----HHHHhcCCc
Confidence 888777777765432211112222232 277788874
No 193
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.10 E-value=0.0045 Score=51.62 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=57.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.+++|+|..|.|||||++.+..... ...+.+|+.... .+..- .+.+.-+...-.+...+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999987642 223444442100 00000 00111222233455566667
Q ss_pred eEEEEEeCCCC-CChhcHHHhhcccCCCCCCcEEEEecCChHHHh
Q 047559 292 KLLLVLDDVWN-EDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 292 r~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~ 335 (444)
+-++++|+.-. .+......+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 77899999843 3333344444444332 246888887765543
No 194
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.09 E-value=0.0046 Score=66.05 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=89.5
Q ss_pred cccccchhHHHHHHHHhcCCC-------CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTS-------SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
++.|.+..++.+.+++...-. -+-...+.+.++|++|+|||+||+.+++... . .| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~-~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--A-YF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--C-eE---EEEecH------
Confidence 478999998888777642100 0002235788999999999999999988632 1 21 222211
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-----------hcHHHhhcccCC-CCCCcEEE
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY-----------CLWEDLKAPFLA-AAPNSKII 325 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~-~~~gs~ii 325 (444)
++. ... .......+...+.......+.+|+||+++.... .....+...+.. ...+..++
T Consensus 247 ~i~----~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIM----SKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHh----ccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 111 000 001111222233333345678999999854211 012223333322 12233344
Q ss_pred E-ecCChH-HHhhcC---C-CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 326 V-TTRHAH-VAATME---P-IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 326 v-TTr~~~-va~~~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
| ||.... +...+. . ...+.+...+.++-.+++....-. .....+.. ...+++.+.|..
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~d~~----l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAEDVD----LDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCccccC----HHHHHHhCCCCC
Confidence 4 454332 111111 1 235677777888888888754321 11111122 244777777764
No 195
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.08 E-value=0.0046 Score=53.63 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=59.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhcc--CC------------C-Cccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITF--AS------------C-DLKA 276 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~--~~------------~-~~~~ 276 (444)
.+++|+|+.|.|||||++.+...... -.+.+++... +.......+-+.++. .. . ..+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 58999999999999999999875322 1233333211 111110111111110 00 0 0111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCCCCCCcEEEEecCChHHHh
Q 047559 277 LNEVQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 277 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~ 335 (444)
-+...-.+...+-.++=++++|+.... +......+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122223455566667788999998542 33333333333322223677888888776654
No 196
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.08 E-value=0.015 Score=61.79 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=73.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|+...+..+.+.+..-... -..|.|+|..|+|||++|+.++...... -...+.+++..-. ...+...
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~----~~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c~~~~--~~~~~~~- 446 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQS----DSTVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNCAAMP--AGLLESD- 446 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCC----CCCEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEecccCC--hhHhhhh-
Confidence 5899998888887666543221 1579999999999999999998764211 1233445554422 1222221
Q ss_pred HHhccCCCCc--ccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEecCCh
Q 047559 265 ESITFASCDL--KALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTTRHA 331 (444)
Q Consensus 265 ~~l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTr~~ 331 (444)
+.+..... .........+ -...+=.|+||++..........|...+.... .+.+||.||..+
T Consensus 447 --lfg~~~~~~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 447 --LFGHERGAFTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred --hcCcccccccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11111100 0000011111 11234569999998876666666666553321 345888888654
No 197
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.07 E-value=0.0013 Score=56.95 Aligned_cols=36 Identities=39% Similarity=0.531 Sum_probs=27.2
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEE
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWV 248 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 248 (444)
...+|.|.|++|+||||+|+.+++... . .+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~-~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--L-KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--H-cCCcEEEE
Confidence 346999999999999999999988743 2 34444554
No 198
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.06 E-value=0.0042 Score=53.68 Aligned_cols=102 Identities=19% Similarity=0.092 Sum_probs=57.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEE------eCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVC------VSDDFDVLNISRALLESITFASCDLKALNEVQVQIK 285 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~------vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 285 (444)
.+++|+|+.|.|||||.+.+..-... ....+++. +.+... .+.-+...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP----NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC----CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 59999999999999999999865322 22333321 111111 111222233455
Q ss_pred HHhCCceEEEEEeCCCCC-ChhcHHHhhcccCCC-CC-CcEEEEecCChHHHh
Q 047559 286 RAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLAA-AP-NSKIIVTTRHAHVAA 335 (444)
Q Consensus 286 ~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTTr~~~va~ 335 (444)
..+..++-++++|+.-.. +......+...+... .. +..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666667789999998432 333333333333221 22 356777777765544
No 199
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.05 E-value=0.004 Score=58.98 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=56.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC---------Cccc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWVCVSDDFDVLNISRALLESITFASC---------DLKA 276 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~ 276 (444)
+.-+++-|+|++|+|||+|+.+++-..... ...-..++|++....|+++++.. +++.++.... ...+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCC
Confidence 334799999999999999998876432211 10224788999988888877653 4555543211 1112
Q ss_pred HHHH---HHHHHHHh-CCceEEEEEeCCC
Q 047559 277 LNEV---QVQIKRAV-DGKKLLLVLDDVW 301 (444)
Q Consensus 277 ~~~~---~~~l~~~l-~~kr~LlVlDdv~ 301 (444)
.+.. ...+...+ .++--|||+|.+-
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 2322 23333344 3344589999984
No 200
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.05 E-value=0.0062 Score=56.61 Aligned_cols=172 Identities=18% Similarity=0.207 Sum_probs=94.2
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH-HHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL-NISRAL 263 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i 263 (444)
.++|-.++..++-.++...--. ++...+.|+|+.|.|||+|......+ .+. .-....-|......... -.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~--~q~-~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSD--IQE-NGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhh--HHh-cCCeEEEEEECccchhhHHHHHHH
Confidence 4788888888887777542110 22246899999999999999888776 221 22233344444443332 245666
Q ss_pred HHHhccCCC----CcccHHHHHHHHHHHhC------CceEEEEEeCCCCCChhcHHHhhcccC-----CCCCCcEEEEec
Q 047559 264 LESITFASC----DLKALNEVQVQIKRAVD------GKKLLLVLDDVWNEDYCLWEDLKAPFL-----AAAPNSKIIVTT 328 (444)
Q Consensus 264 l~~l~~~~~----~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~l~~~l~-----~~~~gs~iivTT 328 (444)
.+++..... ...+..+....+...|+ +-++++|+|+++-.....-..+.-.+. ...+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 666543211 11222333344444442 225888898885542222122222121 123445666888
Q ss_pred CChHHH-------hhcCCCCcccCCCCChHhHHHHHHHhh
Q 047559 329 RHAHVA-------ATMEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 329 r~~~va-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
|-.... ..++-..++-++.++-++...+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 864332 222222345667788888888887765
No 201
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.05 E-value=0.0029 Score=53.60 Aligned_cols=40 Identities=30% Similarity=0.402 Sum_probs=29.5
Q ss_pred EEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD 255 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 255 (444)
++.|+|.+|+||||++..+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 3689999999999999999876422 234667777765543
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0013 Score=60.50 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=49.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.-+.++|.+|+|||.||..+.+... + .--.+.+++ ..+++..+....... .....|.+.+ .+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l-~~ 167 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFIT------APDLLSKLKAAFDEG--------RLEEKLLREL-KK 167 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHh-hc
Confidence 5689999999999999999998865 3 222344444 445555555544421 1122333323 12
Q ss_pred eEEEEEeCCCCCChhcHH
Q 047559 292 KLLLVLDDVWNEDYCLWE 309 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~ 309 (444)
-=||||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 348999999776555555
No 203
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.04 E-value=0.01 Score=53.15 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=86.2
Q ss_pred CcccccchhH---HHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDK---AKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
++++|.+..+ .-|++.|.++..=+....+-|..+|++|.|||.+|+.+.+...+.- +.+-. .+++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~--------l~vka----t~li 188 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL--------LLVKA----TELI 188 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce--------EEech----HHHH
Confidence 4688987654 4456777654432225568899999999999999999999854421 11111 1111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCCh------------hcHHHhhcccC--CCCCCcEEE
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNEDY------------CLWEDLKAPFL--AAAPNSKII 325 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~------------~~~~~l~~~l~--~~~~gs~ii 325 (444)
. +-++ +-......+-+.. +.-++++.+|.++-... +..+.|...+. ....|...|
T Consensus 189 G---ehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 189 G---EHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred H---HHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 0 1111 0011112222222 34589999999854211 01222222222 234576777
Q ss_pred EecCChHHHhh-cCC--CCcccCCCCChHhHHHHHHHhh
Q 047559 326 VTTRHAHVAAT-MEP--IQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 326 vTTr~~~va~~-~~~--~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
-.|........ ..+ ...++...-+++|-.+++..++
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 77766654422 111 1346666678888888888776
No 204
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.03 E-value=0.0025 Score=59.80 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=69.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc-ccccCCcceeE----EEEeCCCC-----C-
Q 047559 187 FGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR-AVEDSKFDVKA----WVCVSDDF-----D- 255 (444)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~~f~~~~----wv~vs~~~-----~- 255 (444)
-+|..+-.--+++|++ +.+..|.+.|.+|.|||-||-...=.. ..+. .|...+ -+.++++. +
T Consensus 227 ~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 227 RPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred CcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcccccCcCCCch
Confidence 3466667777788876 445899999999999999885542111 1111 233222 12233321 0
Q ss_pred ---HHHHHHHHHH---HhccCCCCcccHHHHHHHH---------HHHhCCc---eEEEEEeCCCCCChhcHHHhhcccCC
Q 047559 256 ---VLNISRALLE---SITFASCDLKALNEVQVQI---------KRAVDGK---KLLLVLDDVWNEDYCLWEDLKAPFLA 317 (444)
Q Consensus 256 ---~~~~~~~il~---~l~~~~~~~~~~~~~~~~l---------~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~ 317 (444)
+.-....|.. .+...... ....+...+ ..+++|+ +-+||+|+..+..+.+...+ +..
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~--~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEP--GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTR 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhccccc--chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHh
Confidence 1111222222 22211111 111111111 1244555 45999999988776554444 445
Q ss_pred CCCCcEEEEecC
Q 047559 318 AAPNSKIIVTTR 329 (444)
Q Consensus 318 ~~~gs~iivTTr 329 (444)
.+.||||+.|.-
T Consensus 375 ~G~GsKIVl~gd 386 (436)
T COG1875 375 AGEGSKIVLTGD 386 (436)
T ss_pred ccCCCEEEEcCC
Confidence 688999998875
No 205
>PRK13695 putative NTPase; Provisional
Probab=97.02 E-value=0.00089 Score=57.91 Aligned_cols=23 Identities=43% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+.|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988764
No 206
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.0018 Score=61.63 Aligned_cols=102 Identities=20% Similarity=0.163 Sum_probs=55.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.++|.+|+|||.||..+.+....+ . ..+++++++ +++..+....... ..+... .+ +.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~--g-~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~---~~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR--G-KSVIYRTAD------ELIEILREIRFNN---DKELEE---VY-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC--C-CeEEEEEHH------HHHHHHHHHHhcc---chhHHH---HH-HHhc-c
Confidence 569999999999999999999875322 2 245565543 3333332211110 011111 12 2222 2
Q ss_pred eEEEEEeCCCCCChhcHH--HhhcccCCC-CCCcEEEEecCC
Q 047559 292 KLLLVLDDVWNEDYCLWE--DLKAPFLAA-APNSKIIVTTRH 330 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTTr~ 330 (444)
-=||||||+.......|. .+...+... ..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 248999999665434443 233333221 234568888874
No 207
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.01 E-value=0.0034 Score=57.75 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=55.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhcc-------CCCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITF-------ASCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~-------~~~~~~~~~----- 278 (444)
.-++|+|.+|+|||||++.+++..... +-+.++++-++... .+.++...+...-.. ...+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 578999999999999999999874321 33556777777654 445566655542111 111111111
Q ss_pred HHHHHHHHHh--C-CceEEEEEeCC
Q 047559 279 EVQVQIKRAV--D-GKKLLLVLDDV 300 (444)
Q Consensus 279 ~~~~~l~~~l--~-~kr~LlVlDdv 300 (444)
...-.+.+++ + ++.+||++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223455666 3 89999999999
No 208
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.00 E-value=0.0037 Score=57.58 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=54.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC------------Cccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWVCVSDDFDVLNISRALLESITFASC------------DLKA 276 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~------------~~~~ 276 (444)
.+.=|+|.+|+|||.|+.+++-..... .+.-..++|++-...|....+. +|++....... ....
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHH
Confidence 689999999999999998876432221 1123468999998889887764 45554332110 1122
Q ss_pred HHHHHHHHHHHh-CCceEEEEEeCCC
Q 047559 277 LNEVQVQIKRAV-DGKKLLLVLDDVW 301 (444)
Q Consensus 277 ~~~~~~~l~~~l-~~kr~LlVlDdv~ 301 (444)
...+...+...+ .++--|||+|.+-
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHhhccccceEEEEecchH
Confidence 233333444444 3445599999983
No 209
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.99 E-value=0.0033 Score=53.68 Aligned_cols=115 Identities=20% Similarity=0.146 Sum_probs=62.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC--CCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD--FDVLNISRALLESITFASCDLKALNEVQVQIKRAVD 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 289 (444)
.+++|+|..|.|||||.+.+..... .....+++..... .+..+..+ +.++. ..+.+.-+...-.+...+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK----PDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHh
Confidence 5899999999999999999987532 3345555432111 11111111 11111 0111222223334556666
Q ss_pred CceEEEEEeCCCC-CChhcHHHhhcccCC-CCCCcEEEEecCChHHH
Q 047559 290 GKKLLLVLDDVWN-EDYCLWEDLKAPFLA-AAPNSKIIVTTRHAHVA 334 (444)
Q Consensus 290 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTTr~~~va 334 (444)
.++-++++|+.-+ .|......+...+.. ...|..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 6778889999843 233333444444432 13466788888876643
No 210
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.98 E-value=0.0077 Score=51.59 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=60.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCC--cce---eEEEEeCCCCCH--HHHHHHHHHHhccCCCCcccHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSK--FDV---KAWVCVSDDFDV--LNISRALLESITFASCDLKALNEVQVQI 284 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~~---~~wv~vs~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l 284 (444)
.+++|+|+.|.|||||++.+........+. ++. ..+ +.+.... ..+...+.-. .....+.-+...-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 589999999999999999998764321111 111 112 2222211 1222222110 111222223333345
Q ss_pred HHHhCCceEEEEEeCCCC-CChhcHHHhhcccCCCCCCcEEEEecCChHHHh
Q 047559 285 KRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 285 ~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~ 335 (444)
...+-.++=++++|+.-. .|......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 556666777888998743 2333333333333322 456888887766543
No 211
>PRK06696 uridine kinase; Validated
Probab=96.97 E-value=0.001 Score=60.00 Aligned_cols=45 Identities=29% Similarity=0.336 Sum_probs=35.4
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 188 GRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|.+-+++|.+.+..... ....+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356667778877765332 456899999999999999999998764
No 212
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.97 E-value=0.029 Score=52.99 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=78.9
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 047559 186 VFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLE 265 (444)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~ 265 (444)
++=.......++..+... +.|.|.|++|+||||+|+.+...... . .+.|+++...+..+++..-.-
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~l~~-----~-~~rV~~~~~l~~~DliG~~~~ 112 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAARLNW-----P-CVRVNLDSHVSRIDLVGKDAI 112 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHHHCC-----C-eEEEEecCCCChhhcCCCcee
Confidence 333334455566666432 46999999999999999999886421 1 235565655555444322110
Q ss_pred HhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccC--------C------CCCCcEEEEecCCh
Q 047559 266 SITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFL--------A------AAPNSKIIVTTRHA 331 (444)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--------~------~~~gs~iivTTr~~ 331 (444)
.+........-.+. .+-... .+.+.+++|++....+.....|...|. . ..+.-++|.|+...
T Consensus 113 ~l~~g~~~~~f~~G---pL~~A~-~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 113 VLKDGKQITEFRDG---ILPWAL-QHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred eccCCcceeEEecC---cchhHH-hCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 01000000000000 011111 245678888886554443333222211 1 12345677776643
Q ss_pred HHH--------------hhcCCCC-cccCCCCChHhHHHHHHHhh
Q 047559 332 HVA--------------ATMEPIQ-QYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 332 ~va--------------~~~~~~~-~~~l~~L~~~~~~~lf~~~~ 361 (444)
.-. ..+.... ++.++.++.++=.+++....
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 211 1111222 35688888888888876654
No 213
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.96 E-value=0.0011 Score=58.40 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=53.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh---
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAV--- 288 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--- 288 (444)
+++.|.|++|.||||++..+....... ...+.+..........+... .+. ...++..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~----g~~v~~~apT~~Aa~~L~~~----~~~---~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAA----GKRVIGLAPTNKAAKELREK----TGI---EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHT----T--EEEEESSHHHHHHHHHH----HTS----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhC----CCeEEEECCcHHHHHHHHHh----hCc---chhhHHHHHhcCCcccccc
Confidence 689999999999999999887654332 13333333332222222222 211 1111111100000000
Q ss_pred ---CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh
Q 047559 289 ---DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA 331 (444)
Q Consensus 289 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~ 331 (444)
..+.-+||+|+....+...+..+...... .|+++|+.--..
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999977666666666665543 577888765433
No 214
>PTZ00494 tuzin-like protein; Provisional
Probab=96.95 E-value=0.032 Score=54.19 Aligned_cols=170 Identities=12% Similarity=0.161 Sum_probs=101.1
Q ss_pred CCCcCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHH
Q 047559 179 SVSTERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLN 258 (444)
Q Consensus 179 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 258 (444)
.+..+..++.|+.|-..+.+.|...+. ...+++.+.|.-|.||++|.+........ ..++|.+... ++
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~------paV~VDVRg~---ED 433 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV------ALVHVDVGGT---ED 433 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC------CeEEEEecCC---cc
Confidence 334566799999999988888876554 55699999999999999999988776433 3467777664 45
Q ss_pred HHHHHHHHhccCCCCc--ccHHHH---HHHHHHHhCCceEEEEEeCCCCCC-hhcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 259 ISRALLESITFASCDL--KALNEV---QVQIKRAVDGKKLLLVLDDVWNED-YCLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 259 ~~~~il~~l~~~~~~~--~~~~~~---~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
-++.+++.++.+..+. +-++-. ...-.....++.-+||+-==.-.+ ..-+++.. .|.....-|.|++---.+.
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhh
Confidence 6788888888765432 112222 222222345666666653211110 01122221 2223344556665433222
Q ss_pred HHhh---cCCCCcccCCCCChHhHHHHHHHhh
Q 047559 333 VAAT---MEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 333 va~~---~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
+-.. +.....|.+..++..++.++..+..
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 2111 1223568899999999988876653
No 215
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.95 E-value=0.002 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 216
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.94 E-value=0.0046 Score=53.41 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=60.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc---cccc--CCcc--eeEEEEeCCCCCHHHHHHHHHHHhccCCC------Cccc-H
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR---AVED--SKFD--VKAWVCVSDDFDVLNISRALLESITFASC------DLKA-L 277 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~---~~~~--~~f~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~------~~~~-~ 277 (444)
.+++|+|+.|+|||||.+.+..+. .+.. ..|. ...|+ .+ .+.+..+..... ...+ -
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 689999999999999999886321 1110 0010 12222 21 344555543211 1111 1
Q ss_pred HHHHHHHHHHhCCc--eEEEEEeCCCC-CChhcHHHhhcccCC-CCCCcEEEEecCChHHHh
Q 047559 278 NEVQVQIKRAVDGK--KLLLVLDDVWN-EDYCLWEDLKAPFLA-AAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 278 ~~~~~~l~~~l~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTTr~~~va~ 335 (444)
+...-.+...+-.+ +=++++|+.-. .+......+...+.. ...|..||++|.+.....
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22223344555555 67888899743 233333444444332 124677888888876654
No 217
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.91 E-value=0.0062 Score=58.27 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=56.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC---------Cccc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWVCVSDDFDVLNISRALLESITFASC---------DLKA 276 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~ 276 (444)
+.-.++-|+|.+|+|||+|+.+++-..... .+.-..++|++....|.+.++.. +.+.++.... ...+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 334789999999999999999886432211 11234779999999888887654 4555543221 1223
Q ss_pred HHHHH---HHHHHHh-CCceEEEEEeCCC
Q 047559 277 LNEVQ---VQIKRAV-DGKKLLLVLDDVW 301 (444)
Q Consensus 277 ~~~~~---~~l~~~l-~~kr~LlVlDdv~ 301 (444)
.+++. ..+...+ ..+--|||+|.+-
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 33322 3333333 2334589999984
No 218
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.90 E-value=0.001 Score=61.82 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC 272 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 272 (444)
...+++.+.... +-+.++|+.|+|||++++......... .| ...-++.|...+...+ ..+++.-.....
T Consensus 22 ~~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~~--~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~ 90 (272)
T PF12775_consen 22 YSYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDSD--KY-LVITINFSAQTTSNQL-QKIIESKLEKRR 90 (272)
T ss_dssp HHHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTTC--CE-EEEEEES-TTHHHHHH-HHCCCTTECECT
T ss_pred HHHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCcc--cc-ceeEeeccCCCCHHHH-HHHHhhcEEcCC
Confidence 345566666532 678999999999999999988653211 11 2334455554333332 333222111100
Q ss_pred C-cccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHH
Q 047559 273 D-LKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWE 309 (444)
Q Consensus 273 ~-~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~ 309 (444)
. .-.. -.+|+.++++||+.-...+.|.
T Consensus 91 ~~~~gP----------~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 91 GRVYGP----------PGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp TEEEEE----------ESSSEEEEEEETTT-S---TTS
T ss_pred CCCCCC----------CCCcEEEEEecccCCCCCCCCC
Confidence 0 0000 1478999999999766555443
No 219
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.0078 Score=51.93 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=61.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhcc--CCC---C---------cccH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITF--ASC---D---------LKAL 277 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~--~~~---~---------~~~~ 277 (444)
.+++|+|..|.|||||++.+..... ...+.+++.-....+.. ..+-..+.. +.. . .+.-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 5899999999999999999987532 22344443211100000 011111100 000 0 0111
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCC-CCCCcEEEEecCChHHHh
Q 047559 278 NEVQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLA-AAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTTr~~~va~ 335 (444)
+...-.+...+..++=++++|+.-.. |......+...+.. ...|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 12223456666777889999998442 33333334444332 123677888888776554
No 220
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0066 Score=59.15 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++.++|++|+||||++.++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998653
No 221
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.007 Score=52.13 Aligned_cols=117 Identities=20% Similarity=0.193 Sum_probs=59.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC--CCHHHHHHHHHHHhcc--CCC---C-------cccH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD--FDVLNISRALLESITF--ASC---D-------LKAL 277 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~il~~l~~--~~~---~-------~~~~ 277 (444)
.+++|+|+.|.|||||.+.+..-.. ...+.+++.-... ...... .+.++. ... . .+.-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 5899999999999999999987532 2233333321110 001110 011110 000 0 0111
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCCCCCCcEEEEecCChHHHhh
Q 047559 278 NEVQVQIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~ 336 (444)
+...-.+...+-.++-+++||+... .|......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1122235555666777999999844 2333333343333322235678888887766543
No 222
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.015 Score=60.50 Aligned_cols=180 Identities=13% Similarity=0.143 Sum_probs=99.1
Q ss_pred cccccc---hhHHHHHHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHH
Q 047559 185 AVFGRQ---QDKAKMLEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLN 258 (444)
Q Consensus 185 ~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 258 (444)
++.|-+ .|+.+++.+|.++.. -+-.-++-+.++|++|.|||-||+.++....+. |+++|.. +
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP--------F~svSGS----E 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSVSGS----E 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc--------eeeechH----H
Confidence 567765 466677777766431 011335779999999999999999999876543 3444441 1
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCCh---------------hcHHHhhcccCCC--CC
Q 047559 259 ISRALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNEDY---------------CLWEDLKAPFLAA--AP 320 (444)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~---------------~~~~~l~~~l~~~--~~ 320 (444)
.++.+... . ....+.|.... ...+++|.+|+++.... ..++++...+... ..
T Consensus 380 ----FvE~~~g~--~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 380 ----FVEMFVGV--G----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHhccc--c----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 11111110 0 11222222222 34578888888854211 1133333332221 22
Q ss_pred CcEEEEecCChHHHh--hcCCC---CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHH
Q 047559 321 NSKIIVTTRHAHVAA--TMEPI---QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLA 390 (444)
Q Consensus 321 gs~iivTTr~~~va~--~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 390 (444)
+.-+|-+|+..++.. .+.+. ..+.+..-+.....++|..++-... .+.+...+++ |+...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHH
Confidence 334444666555542 22332 5677888888888899988763322 2233444455 77777777654
No 223
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.011 Score=59.11 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=88.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
..-|.++|++|.|||-||+.|+|.... + |++|-.+ +++... ++ .+........++.=..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~---N-----FisVKGP----ELlNkY---VG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA---N-----FISVKGP----ELLNKY---VG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC---c-----eEeecCH----HHHHHH---hh------hHHHHHHHHHHHhhcC
Confidence 357899999999999999999998543 3 3444332 222111 11 1122222333333356
Q ss_pred ceEEEEEeCCCCCCh-----hc------HHHhhcccCC--CCCCcEEEEecCChHHHh--hcCCC---CcccCCCCChHh
Q 047559 291 KKLLLVLDDVWNEDY-----CL------WEDLKAPFLA--AAPNSKIIVTTRHAHVAA--TMEPI---QQYNLQCLSDED 352 (444)
Q Consensus 291 kr~LlVlDdv~~~~~-----~~------~~~l~~~l~~--~~~gs~iivTTr~~~va~--~~~~~---~~~~l~~L~~~~ 352 (444)
-+++|+||.++..-+ .. .++|..-+.. ...|.-||-.|..+++.. .+.+. ....++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 789999999966311 11 2334433322 235667777676665542 23333 456777788899
Q ss_pred HHHHHHHhhccCCCC-CccchHHHHHHHHHHHcCCCh
Q 047559 353 CWSLFMMHAFVGQDI-TAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 353 ~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~P 388 (444)
-.++++...-....+ ..+-.+++|++. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 999998877432222 223356665542 3566653
No 224
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.84 E-value=0.0054 Score=57.99 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=54.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCC-----CCcccHHHHHHH
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFAS-----CDLKALNEVQVQ 283 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~ 283 (444)
+.-+++-|+|++|+||||||.++...... .-..++|++....++.. .++.++... ....+.++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 44479999999999999999988765322 33456788776655543 233333211 122344555555
Q ss_pred HHHHhC-CceEEEEEeCCCC
Q 047559 284 IKRAVD-GKKLLLVLDDVWN 302 (444)
Q Consensus 284 l~~~l~-~kr~LlVlDdv~~ 302 (444)
+...++ +..-+||+|.+-.
T Consensus 125 ~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHhhccCCcEEEEcchhh
Confidence 555553 4566999999853
No 225
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.83 E-value=0.0046 Score=59.41 Aligned_cols=107 Identities=20% Similarity=0.179 Sum_probs=67.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|++..+..+...+... +-+.+.|++|+|||+||+.+..... -..+++.+.......+++....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCchh
Confidence 3788888888887777654 4689999999999999999988632 2346777777777776654333
Q ss_pred HHhccCCCCcccHHHHHHHHHHHhCC-----ceEEEEEeCCCCCChhcHHHhhccc
Q 047559 265 ESITFASCDLKALNEVQVQIKRAVDG-----KKLLLVLDDVWNEDYCLWEDLKAPF 315 (444)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~l~~~l~~-----kr~LlVlDdv~~~~~~~~~~l~~~l 315 (444)
-....... .-.++..+ -+.++++|.++...+.....|...+
T Consensus 91 ~~~~~~~~----------~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 91 YAALLLEP----------GEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred HhhhhccC----------CeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHH
Confidence 22211000 00000111 1158999999887665444444443
No 226
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0062 Score=55.25 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=72.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC-----CCCHHHHHHHHHHHhccCCC------CcccHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD-----DFDVLNISRALLESITFASC------DLKALNEV 280 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~il~~l~~~~~------~~~~~~~~ 280 (444)
.+++|||..|.|||||++.+..-... -.+.+++...+ .....+-..+++..++.... ..-+-.+.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~p----t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEP----TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCC----CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 68999999999999999999875432 22344443221 11233445566666653321 11122222
Q ss_pred -HHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCC--CCCCcEEEEecCChHHHhhcCC
Q 047559 281 -QVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLA--AAPNSKIIVTTRHAHVAATMEP 339 (444)
Q Consensus 281 -~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTTr~~~va~~~~~ 339 (444)
.-.+.+.|.-++-|||.|+.-+. +...-.++...+.+ ...|-..++.|.+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 33577788889999999998553 21112223333322 2446678888888887766543
No 227
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.83 E-value=0.0077 Score=57.65 Aligned_cols=92 Identities=11% Similarity=0.148 Sum_probs=55.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC---------Cccc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWVCVSDDFDVLNISRALLESITFASC---------DLKA 276 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~ 276 (444)
+.-.++-|.|.+|+|||+|+..++-..... .+.-..++|++....|.++++. ++++.++.... ...+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCC
Confidence 334789999999999999998877432211 1012368999999988887754 45555443221 1122
Q ss_pred HHHHH---HHHHHHh-CCceEEEEEeCCC
Q 047559 277 LNEVQ---VQIKRAV-DGKKLLLVLDDVW 301 (444)
Q Consensus 277 ~~~~~---~~l~~~l-~~kr~LlVlDdv~ 301 (444)
.+.+. ..+...+ ..+--|||+|.+-
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 33332 2232333 3445689999984
No 228
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.82 E-value=0.0056 Score=62.98 Aligned_cols=136 Identities=11% Similarity=0.076 Sum_probs=74.5
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
...++|....+.++.+.+..-... -..|.|+|..|+|||++|+.+++...... ...+.|+++.-. .+.+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~----~~pvli~Ge~GtGK~~lA~~ih~~s~r~~---~pfv~i~c~~~~--~~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARS----NSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAALS--ETLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCc----CCCEEEECCCCccHHHHHHHHHHhCCCCC---CCeEEeecCCCC--HHHHHH
Confidence 457899999999888877553321 24688999999999999999997632111 123444544321 222222
Q ss_pred HHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEecCCh
Q 047559 263 LLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTTRHA 331 (444)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTr~~ 331 (444)
.+.+....... ...............-.|+||++.......+..|...+.... ...+||.||...
T Consensus 266 ---~lfg~~~~~~~-~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 266 ---ELFGHEKGAFT-GAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred ---HHcCCCCCccC-CCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 12111110000 000000000011234568899998877666666766654321 135888877643
No 229
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.80 E-value=0.0061 Score=61.69 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=43.2
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEE
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVC 249 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 249 (444)
+++--.+-++++..||...-... ...+++.+.|++|+||||.++.+++.. .|+..-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~-~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGS-SPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccC-CCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 34455667788888887533222 345799999999999999999999874 466677864
No 230
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.79 E-value=0.0015 Score=58.93 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
-|.|+|++|+||||+|+.+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 231
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.78 E-value=0.0069 Score=56.68 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=22.9
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..+++.|+|++|+||||++..+.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999876643
No 232
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.77 E-value=0.006 Score=51.39 Aligned_cols=117 Identities=19% Similarity=0.114 Sum_probs=61.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC---CCCHHHHHHHHHHHh-----ccC----CCC-ccc--
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD---DFDVLNISRALLESI-----TFA----SCD-LKA-- 276 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~il~~l-----~~~----~~~-~~~-- 276 (444)
..|-|++..|.||||+|....-+.-- +--.+.++..-. ......+++.+ ..+ +.. ..+ ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~---~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG---HGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 46778888899999999776654321 212233333222 22333333332 011 000 000 011
Q ss_pred -HHHHHHHHHHHhCCce-EEEEEeCCCCC---ChhcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 277 -LNEVQVQIKRAVDGKK-LLLVLDDVWNE---DYCLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 277 -~~~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
........++.+.... =|||||++-.. .....+.+...+.....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1112233444554444 49999998432 22345666666666677889999999754
No 233
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.77 E-value=0.001 Score=66.79 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=39.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999983321111134479999999999999999999864
No 234
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.77 E-value=0.0088 Score=56.84 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=53.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC---------Cccc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWVCVSDDFDVLNISRALLESITFASC---------DLKA 276 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~ 276 (444)
+.-.++.|.|.+|+|||+|+..++...... .+....++|++....+....+ .++.+.++.... ...+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCC
Confidence 344899999999999999999887532211 101235689998887777653 334444332211 1122
Q ss_pred HHHH---HHHHHHHhC-CceEEEEEeCCC
Q 047559 277 LNEV---QVQIKRAVD-GKKLLLVLDDVW 301 (444)
Q Consensus 277 ~~~~---~~~l~~~l~-~kr~LlVlDdv~ 301 (444)
.+++ ...+...+. .+--|||+|.+-
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 2332 333333343 345589999984
No 235
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.75 E-value=0.0076 Score=54.84 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=53.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCC-----------------
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFAS----------------- 271 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~----------------- 271 (444)
+.-.++.|+|.+|+|||+|+.++..... + .-..++|++.... ..++.+.+ .+++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~--~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL-K--QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH-h--CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 4447999999999999999999864421 1 2346788887654 34444443 2222110
Q ss_pred ---CCcccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 047559 272 ---CDLKALNEVQVQIKRAVDG-KKLLLVLDDVW 301 (444)
Q Consensus 272 ---~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 301 (444)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666643 55589999985
No 236
>PRK09354 recA recombinase A; Provisional
Probab=96.74 E-value=0.0075 Score=57.53 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCC-----CCcccHHHHHHH
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFAS-----CDLKALNEVQVQ 283 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~ 283 (444)
+.-+++-|+|++|+||||||.++..... . .-..++|++.-..++.. .++.++... ....+.++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~--~-~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQ--K-AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--H-cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 3447999999999999999999876532 2 34567899887766652 233333211 122345555555
Q ss_pred HHHHhC-CceEEEEEeCCCC
Q 047559 284 IKRAVD-GKKLLLVLDDVWN 302 (444)
Q Consensus 284 l~~~l~-~kr~LlVlDdv~~ 302 (444)
+...++ +..-+||+|.+-.
T Consensus 130 ~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHHhhcCCCCEEEEeChhh
Confidence 555553 4566999999853
No 237
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0028 Score=54.79 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=21.8
Q ss_pred EEEEEecCCChHHHHHHHHhhcccc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAV 237 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~ 237 (444)
.|.|.|++|+||||+|+.+.+...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999988543
No 238
>PRK03839 putative kinase; Provisional
Probab=96.74 E-value=0.0024 Score=55.52 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|.|+|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999874
No 239
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.012 Score=51.90 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=72.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc--cccC--Ccc--------------eeEEEEeCCCC-----CHHHHHHHHHHHhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA--VEDS--KFD--------------VKAWVCVSDDF-----DVLNISRALLESIT 268 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~--~f~--------------~~~wv~vs~~~-----~~~~~~~~il~~l~ 268 (444)
-+-+|.|+.|+||||||..+.-++. +..+ .|+ .-+++....+. +..++++...+...
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 5889999999999999999976642 2110 121 11233322222 23444444443322
Q ss_pred cCCC-----------------------------CcccHHHHHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCC-
Q 047559 269 FASC-----------------------------DLKALNEVQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLA- 317 (444)
Q Consensus 269 ~~~~-----------------------------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~- 317 (444)
.... .-+.-+.....+.+.+-=++-|.|||..++- |.+....+...+..
T Consensus 111 ~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l 190 (251)
T COG0396 111 GARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL 190 (251)
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH
Confidence 2110 0011122233444455456779999999774 33333333333322
Q ss_pred CCCCcEEEEecCChHHHhhcCCCCcc
Q 047559 318 AAPNSKIIVTTRHAHVAATMEPIQQY 343 (444)
Q Consensus 318 ~~~gs~iivTTr~~~va~~~~~~~~~ 343 (444)
...|+-+|+.|..+.+.....+..+|
T Consensus 191 r~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 191 REEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 23477788888888888877665443
No 240
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.73 E-value=0.0067 Score=57.39 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=53.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCC-----CCcccHHHHHHH
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFAS-----CDLKALNEVQVQ 283 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~ 283 (444)
+.-+++-|+|++|+||||||.+++..... .-..++|++....+++. .++.++... ....+.++....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHH
Confidence 34479999999999999999998765321 33567788877666643 223332211 122344555555
Q ss_pred HHHHhC-CceEEEEEeCCC
Q 047559 284 IKRAVD-GKKLLLVLDDVW 301 (444)
Q Consensus 284 l~~~l~-~kr~LlVlDdv~ 301 (444)
+...++ +.--+||+|.+-
T Consensus 125 ~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHhccCCCEEEEcchH
Confidence 555553 445699999984
No 241
>PTZ00035 Rad51 protein; Provisional
Probab=96.72 E-value=0.015 Score=55.71 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=54.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC---------Cccc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWVCVSDDFDVLNISRALLESITFASC---------DLKA 276 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~ 276 (444)
+.-.++.|+|.+|+|||+|+..++-..... .+.-..++|++....|++..+ .++.+.++.... ...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 334799999999999999999887443211 102235679988777777663 334444332211 1122
Q ss_pred HHHHHHH---HHHHh-CCceEEEEEeCCCC
Q 047559 277 LNEVQVQ---IKRAV-DGKKLLLVLDDVWN 302 (444)
Q Consensus 277 ~~~~~~~---l~~~l-~~kr~LlVlDdv~~ 302 (444)
.+++... +...+ .++--|||+|.+..
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 2333332 33333 34456999999843
No 242
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.009 Score=54.11 Aligned_cols=122 Identities=19% Similarity=0.253 Sum_probs=66.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc-----cc--cC---Cc---ceeEEEEe----CCC--CCHH---------------
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA-----VE--DS---KF---DVKAWVCV----SDD--FDVL--------------- 257 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~-----~~--~~---~f---~~~~wv~v----s~~--~~~~--------------- 257 (444)
.+++|+|+.|.|||||.+.+..-.. +. .. .+ ..+.||.= ... .++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6999999999999999999986221 11 00 01 23445531 111 1121
Q ss_pred -------HHHHHHHHHhccCCC------CcccHHHHHHHHHHHhCCceEEEEEeCCCCC-Chh---cHHHhhcccCCCCC
Q 047559 258 -------NISRALLESITFASC------DLKALNEVQVQIKRAVDGKKLLLVLDDVWNE-DYC---LWEDLKAPFLAAAP 320 (444)
Q Consensus 258 -------~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~---~~~~l~~~l~~~~~ 320 (444)
+.....++.++.... ..+.-+.....|.+.|..++=||+||+--.. |.. ..-.+...+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--E 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 233333343332211 1122233344577888899999999996432 222 22233333333 2
Q ss_pred CcEEEEecCChHHHh
Q 047559 321 NSKIIVTTRHAHVAA 335 (444)
Q Consensus 321 gs~iivTTr~~~va~ 335 (444)
|..||++|-+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999998765443
No 243
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.71 E-value=0.0066 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998753
No 244
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.71 E-value=0.018 Score=50.34 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCC-CCCCcEEEEecCChHHHhhc
Q 047559 280 VQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLA-AAPNSKIIVTTRHAHVAATM 337 (444)
Q Consensus 280 ~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTTr~~~va~~~ 337 (444)
..-.|.+.|.=++=++.||+.-+. |++.-.++...+.. ...|-..|+.|..-..|..+
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 334577778777889999998553 44444444444333 34566677777766666543
No 245
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.71 E-value=0.012 Score=56.09 Aligned_cols=91 Identities=11% Similarity=0.180 Sum_probs=55.7
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC------------Cc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAWVCVSDDFDVLNISRALLESITFASC------------DL 274 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~------------~~ 274 (444)
.-.++-|+|++|+|||+|+.+++-...... +.-..++|++....|++..+.+ +++.++.... ..
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 347999999999999999999875532211 0124789999988888776653 3343332110 11
Q ss_pred ccHHHHHHHHHHHhCC--ceEEEEEeCCC
Q 047559 275 KALNEVQVQIKRAVDG--KKLLLVLDDVW 301 (444)
Q Consensus 275 ~~~~~~~~~l~~~l~~--kr~LlVlDdv~ 301 (444)
.....+...+...+.. +--|||+|.+-
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 1112334455555543 33489999983
No 246
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.70 E-value=0.005 Score=58.93 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=71.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|+...+.++.+.+..-... -.-|.|+|..|+||+++|+.++...... -...+.|+++.- +. +.+...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~----~~pVlI~GE~GtGK~~lA~~iH~~s~r~---~~pfv~v~c~~~-~~-~~~~~~- 76 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPL----DKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAAL-NE-NLLDSE- 76 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHhCCcc---CCCeEEEeCCCC-CH-HHHHHH-
Confidence 4889988888888877654322 1568999999999999999998642111 123344555542 22 222221
Q ss_pred HHhccCCCCc--ccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEecCCh
Q 047559 265 ESITFASCDL--KALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTTRHA 331 (444)
Q Consensus 265 ~~l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTr~~ 331 (444)
+.+..... .........+ .....=.|+||++.......+..|...+..+. ...+||.||...
T Consensus 77 --lfg~~~~~~~g~~~~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 77 --LFGHEAGAFTGAQKRHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred --HccccccccCCcccccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 11111000 0000000011 11223357899998876666666666553321 135888877643
No 247
>PRK00625 shikimate kinase; Provisional
Probab=96.70 E-value=0.02 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|.|+||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 248
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.69 E-value=0.012 Score=50.77 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=59.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC--CCCHHHHHHHHHHHhccC--CCC----------cccH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD--DFDVLNISRALLESITFA--SCD----------LKAL 277 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~il~~l~~~--~~~----------~~~~ 277 (444)
.+++|+|+.|.|||||.+.+..... ...+.+++.-.. ....... ...+... ... .+.-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR----PTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 5899999999999999999986532 222333332111 0111111 1111100 000 1111
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCC-CCCCcEEEEecCChHHHh
Q 047559 278 NEVQVQIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLA-AAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTTr~~~va~ 335 (444)
+...-.+...+-.++=+++||+... .|......+...+.. ...|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2222345555556667889999844 233333333333322 124667888888776554
No 249
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.68 E-value=0.0032 Score=55.68 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=58.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH-HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL-NISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
.++.|+|+.|+||||++..+..... . .....+++- .++.... .-...++.+. ....+.......++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~--~-~~~~~i~t~-e~~~E~~~~~~~~~i~q~----~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN--K-NKTHHILTI-EDPIEFVHESKRSLINQR----EVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh--h-cCCcEEEEE-cCCccccccCccceeeec----ccCCCccCHHHHHHHHhcC
Confidence 4799999999999999998776532 1 223344432 2221100 0000111110 0011122344556677766
Q ss_pred ceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHh
Q 047559 291 KKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 291 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~ 335 (444)
.+=+|++|++.+. ......... ...|..++.|+...++..
T Consensus 74 ~pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 74 DPDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CcCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 6779999999543 333332222 234566777777666554
No 250
>PHA02244 ATPase-like protein
Probab=96.68 E-value=0.011 Score=56.53 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-|.|+|++|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999876
No 251
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.67 E-value=0.0045 Score=55.36 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
+++.|+|+.|.|||||.+.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999998873
No 252
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.67 E-value=0.0093 Score=53.14 Aligned_cols=84 Identities=29% Similarity=0.418 Sum_probs=52.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhcc-------CCCCcccHHH----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD-FDVLNISRALLESITF-------ASCDLKALNE---- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~il~~l~~-------~~~~~~~~~~---- 279 (444)
.-+.|+|.+|+|||+|+..+.+.. .-+..+++.++.. -...++.+.+...-.. ...+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 578999999999999999998874 2345588888765 3455566555433111 1111111111
Q ss_pred -HHHHHHHHh--CCceEEEEEeCC
Q 047559 280 -VQVQIKRAV--DGKKLLLVLDDV 300 (444)
Q Consensus 280 -~~~~l~~~l--~~kr~LlVlDdv 300 (444)
..-.+.+++ +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 112233444 689999999999
No 253
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.66 E-value=0.008 Score=54.04 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|+|.|.+|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 254
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.65 E-value=0.019 Score=56.37 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=32.0
Q ss_pred HHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCC-CCCCcEEEEecCChHHHhh
Q 047559 283 QIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLA-AAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 283 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTTr~~~va~~ 336 (444)
-|.+.+-+.++|+|||+-.+. |..--..+...+.. ...|..+|+.|..+.+...
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 477888899999999997442 21212224444433 3456666666665655543
No 255
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0036 Score=51.94 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=33.2
Q ss_pred EEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA 270 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~ 270 (444)
+|.|.|++|+||||+|+.+.++...+. .+...++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~--------------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL--------------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce--------------eeccHHHHHHHHHcCCC
Confidence 689999999999999999998764432 12346777777776543
No 256
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.63 E-value=0.021 Score=54.99 Aligned_cols=104 Identities=20% Similarity=0.173 Sum_probs=53.0
Q ss_pred ceEEEEEecCCChHHH-HHHHHhhccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh
Q 047559 211 LAVIPIVGMAGVGKTT-LAREVYNDRAVEDSKFDVKAWVCVSD-DFDVLNISRALLESITFASCDLKALNEVQVQIKRAV 288 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 288 (444)
-++|.+||+.|+|||| ||+..+.-. ... .-..+..++... .....+-++...+-++..-....+..++...+.. +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~-~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV-MLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-hhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 4899999999999985 555554332 111 223455555433 1223344455555555443334444444444433 2
Q ss_pred CCceEEEEEeCCCCC--ChhcHHHhhcccCCC
Q 047559 289 DGKKLLLVLDDVWNE--DYCLWEDLKAPFLAA 318 (444)
Q Consensus 289 ~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~ 318 (444)
++. =+|.+|-+-.. +.....++...+...
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 233 35666776432 223344555554443
No 257
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.62 E-value=0.011 Score=53.41 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=38.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEE-------EeCCCCCHHHH--HHHHHHHhccCC
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWV-------CVSDDFDVLNI--SRALLESITFAS 271 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~vs~~~~~~~~--~~~il~~l~~~~ 271 (444)
....+|.++||+|+||||+.+.++.....+. ....++=+ ...-+.++.+. ++..+.+.....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~-~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKK-TPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhcc-CCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 4457889999999999999999998765544 33322221 12223455544 456666665433
No 258
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.61 E-value=0.02 Score=54.49 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=40.0
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEEEEeCCCCCHHHHHHHHHHHh
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAWVCVSDDFDVLNISRALLESI 267 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~il~~l 267 (444)
.-.++-|+|.+|+|||+|+.+++....... ..-..++||+....|+...+. ++++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 347999999999999999999876532211 012378999998888877654 334443
No 259
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.018 Score=61.03 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=72.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCC--CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDH--SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 261 (444)
..++|.++.+..|.+.+.....+.. .+...+.+.|+.|+|||-||+.+..-. -+ ..+..+-++.|. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~--Fg-se~~~IriDmse------~~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV--FG-SEENFIRLDMSE------FQE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH--cC-CccceEEechhh------hhh
Confidence 3578888888888887766442221 256788899999999999999987652 11 233344444333 222
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHHHhCCceE-EEEEeCCCCCChhcHHHhhccc
Q 047559 262 ALLESITFASCDLKALNEVQVQIKRAVDGKKL-LLVLDDVWNEDYCLWEDLKAPF 315 (444)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l 315 (444)
...+....+.- --.+....|.+.++.++| +|+||||...+......+...+
T Consensus 633 --vskligsp~gy-vG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 633 --VSKLIGSPPGY-VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred --hhhccCCCccc-ccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 23332222211 111223467777877776 7779999888776666555554
No 260
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.60 E-value=0.0024 Score=67.88 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=55.6
Q ss_pred CceEEEEEeCCCCC-ChhcHHHh----hcccCCCCCCcEEEEecCChHHHhhcCCCCcccCCCCCh-HhHHHHHHHhhcc
Q 047559 290 GKKLLLVLDDVWNE-DYCLWEDL----KAPFLAAAPNSKIIVTTRHAHVAATMEPIQQYNLQCLSD-EDCWSLFMMHAFV 363 (444)
Q Consensus 290 ~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTTr~~~va~~~~~~~~~~l~~L~~-~~~~~lf~~~~~~ 363 (444)
+.+-|++||++-.. ++..-..+ ...+. ..|+.+|+||....+.........+....+.. .+... |..+...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEECC
Confidence 47899999998553 33333223 22222 35789999999887754332111110000000 11111 1112111
Q ss_pred CCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHHh
Q 047559 364 GQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSKRHDEWDEILN 411 (444)
Q Consensus 364 ~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~ 411 (444)
+ .+. ...|-.|++++ |+|-.+..-|..+......++.++++
T Consensus 478 G-~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~ 518 (771)
T TIGR01069 478 G-IPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIE 518 (771)
T ss_pred C-CCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1 111 12345566665 78888888887776554444444444
No 261
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.59 E-value=0.012 Score=53.25 Aligned_cols=204 Identities=13% Similarity=0.180 Sum_probs=113.7
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc---ccccCCcceeEEEEeCCC---------
Q 047559 186 VFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR---AVEDSKFDVKAWVCVSDD--------- 253 (444)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~~f~~~~wv~vs~~--------- 253 (444)
+.++++....+...... ++..-+.++|+.|.||-|.+-.+.+.. .+..-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 55666666666654431 445789999999999988765554431 111112345556654432
Q ss_pred -C-----------CHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC-ceE-EEEEeCCCCCChhcHHHhhcccCCCC
Q 047559 254 -F-----------DVLNISRALLESITFASCDLKALNEVQVQIKRAVDG-KKL-LLVLDDVWNEDYCLWEDLKAPFLAAA 319 (444)
Q Consensus 254 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 319 (444)
+ ...-+..+++.++..+.+ + ...+ +.| ++|+-.+++...+....+++....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----------i--e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------I--ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------h--hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 111223333333322111 0 0122 334 66777777666666677777766666
Q ss_pred CCcEEEEecCCh-HHHhhc-CCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHH
Q 047559 320 PNSKIIVTTRHA-HVAATM-EPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGL 397 (444)
Q Consensus 320 ~gs~iivTTr~~-~va~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 397 (444)
..+|+|+...+- .+.... +..-.+++...+++|....+...+-..+ -....+++.+|+++++|+---...+...
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~----l~lp~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG----LQLPKELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc----ccCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 777887744321 111111 1123478899999999998887653221 1222667889999999975544444443
Q ss_pred hcCC-----------CHHHHHHHHhc
Q 047559 398 LRSK-----------RHDEWDEILNS 412 (444)
Q Consensus 398 L~~~-----------~~~~w~~~l~~ 412 (444)
++.+ +.-+|+-++.+
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHH
Confidence 3322 24578877665
No 262
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.58 E-value=0.016 Score=51.01 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=34.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD-DFDVLNISRALLESITF 269 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~il~~l~~ 269 (444)
+++.++|+.|+||||.+-+++.....+ -..+..++... .....+-++...+.++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 799999999999999888877664332 22345555432 12334555555555553
No 263
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.57 E-value=0.012 Score=53.42 Aligned_cols=28 Identities=29% Similarity=0.333 Sum_probs=24.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
....+++|.|+.|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999987643
No 264
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.57 E-value=0.026 Score=55.94 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=44.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC--HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD--VLNISRALLESITFASCDLKALNEVQVQIKRAVD 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 289 (444)
+++.++|++|+||||++..+........ .-..+..|+... +. ..+.+....+.++.......+..++...+.. +.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 6999999999999999888776543111 223445555432 21 1122333233333222222333444444443 22
Q ss_pred CceEEEEEeCC
Q 047559 290 GKKLLLVLDDV 300 (444)
Q Consensus 290 ~kr~LlVlDdv 300 (444)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 2457888966
No 265
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.56 E-value=0.018 Score=50.70 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=44.3
Q ss_pred EEEEEecCCChHHHHHHHHhhccccccCCcc---eeEEEEeCCCCCHHHHHHHHHHHh----ccCCCCcccHHHHHHHHH
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAVEDSKFD---VKAWVCVSDDFDVLNISRALLESI----TFASCDLKALNEVQVQIK 285 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~---~~~wv~vs~~~~~~~~~~~il~~l----~~~~~~~~~~~~~~~~l~ 285 (444)
||+|.|.+|+||||+|+.+........ .. ....++...-......... -... ....+...+.+.+...|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~--~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG--IPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT--TTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC--cCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999987654322 22 1223322222222222111 1111 111234566777777787
Q ss_pred HHhCCceEEE
Q 047559 286 RAVDGKKLLL 295 (444)
Q Consensus 286 ~~l~~kr~Ll 295 (444)
.+..++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7767665443
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0024 Score=52.95 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=23.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVE 238 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 238 (444)
.-|.|.|++|+||||+++.+.+..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 568999999999999999999876544
No 267
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.54 E-value=0.021 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.666 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|..|.|||||.+.+....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998653
No 268
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.53 E-value=0.012 Score=57.74 Aligned_cols=86 Identities=22% Similarity=0.236 Sum_probs=53.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFA-------SCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 278 (444)
..++|+|..|+|||||++.+.... ..+..+.+-++... .+.++...++..-... ..+.+...
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 579999999999999999998642 34566667676654 3455666654431111 11111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCCC
Q 047559 279 EVQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
.....+.+++ +++++||++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1122355565 68899999999943
No 269
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.52 E-value=0.036 Score=49.34 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|.|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999754
No 270
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.19 Score=47.22 Aligned_cols=132 Identities=11% Similarity=0.120 Sum_probs=79.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc--------ccccCCcceeEEEEe-CCCCCHHHHHHHHHHHhccCCCCcccHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR--------AVEDSKFDVKAWVCV-SDDFDVLNISRALLESITFASCDLKALNEVQV 282 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~~f~~~~wv~v-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 282 (444)
.+..++|..|.||+++|..+.+.. .... |.+...++.. +......++ +++.+.+....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~-~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~----------- 85 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE-LPANIILFDIFDKDLSKSEF-LSAINKLYFSS----------- 85 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC-CCcceEEeccCCCcCCHHHH-HHHHHHhccCC-----------
Confidence 577899999999999998887653 1111 2223333321 111222221 12222222111
Q ss_pred HHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-hHHHh-hcCCCCcccCCCCChHhHHHHHHHh
Q 047559 283 QIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-AHVAA-TMEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 283 ~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-~~va~-~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
+-.+.+=++|+|++...+....+.+...+...+.++.+|++|.+ ..+.. ..+....+++.++++++....+...
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 00146778889999777666778888888877778877776654 33332 2334477999999999988777643
No 271
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.034 Score=56.34 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=34.1
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS-------SDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+++-|.++-+.+|.+...-+-. -+-...+-|..+|++|.|||++|+.+.+..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~ 492 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA 492 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh
Confidence 3455666655555543322110 011445789999999999999999999874
No 272
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0096 Score=51.64 Aligned_cols=120 Identities=20% Similarity=0.197 Sum_probs=59.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhcc--CCC---C-----------cc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITF--ASC---D-----------LK 275 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~--~~~---~-----------~~ 275 (444)
.+++|+|+.|.|||||++.+..... ...+.+.+.-........-.....+.+.. ..+ . .+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEE----PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 5899999999999999999986532 22333333211100000000011111110 000 0 01
Q ss_pred cHHHHHHHHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCCC-CC-CcEEEEecCChHHHh
Q 047559 276 ALNEVQVQIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLAA-AP-NSKIIVTTRHAHVAA 335 (444)
Q Consensus 276 ~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTTr~~~va~ 335 (444)
.-+...-.+...+..++=++++|+.-. .|......+...+... .. |..||++|.+.....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 112222345556666778899999843 2333334444433321 22 567888887765544
No 273
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.51 E-value=0.0084 Score=61.18 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=76.1
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
...++|+...+.++.+.+..-... -..|.|+|..|+|||++|+.++...... -...+.|+++.-.+ +.+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~----~~pVlI~Ge~GtGK~~~A~~ih~~s~r~---~~p~v~v~c~~~~~--~~~e~ 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS----DLNVLILGETGVGKELVARAIHAASPRA---DKPLVYLNCAALPE--SLAES 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHhCCcC---CCCeEEEEcccCCh--HHHHH
Confidence 356899999998888877664332 2578999999999999999998763221 12335556554321 22221
Q ss_pred HHHHhccCCCCcc--cHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEecC
Q 047559 263 LLESITFASCDLK--ALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTTR 329 (444)
Q Consensus 263 il~~l~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTr 329 (444)
.+.+.....- ........+. ....-.|+||++..........|...+.... ...+||.||.
T Consensus 257 ---~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 257 ---ELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred ---HhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 2221111000 0000000011 1223347899998877666667766654321 2458888886
Q ss_pred Ch
Q 047559 330 HA 331 (444)
Q Consensus 330 ~~ 331 (444)
..
T Consensus 331 ~~ 332 (509)
T PRK05022 331 RD 332 (509)
T ss_pred CC
Confidence 54
No 274
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.022 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999865
No 275
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.50 E-value=0.0071 Score=57.58 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
.....+.|+|++|.|||.+|+.+++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 4558999999999999999999998753
No 276
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0051 Score=60.49 Aligned_cols=54 Identities=30% Similarity=0.342 Sum_probs=39.4
Q ss_pred cccccc---hhHHHHHHHHhcCCCC---CCCCceEEEEEecCCChHHHHHHHHhhccccc
Q 047559 185 AVFGRQ---QDKAKMLEMVLTDTSS---DHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE 238 (444)
Q Consensus 185 ~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 238 (444)
++-|-+ .|+++|+++|.++..- ++.=.+-|.++|++|.|||-||+.++....+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 345554 6888999999765321 11224678999999999999999999876553
No 277
>PRK06217 hypothetical protein; Validated
Probab=96.47 E-value=0.011 Score=51.50 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=25.9
Q ss_pred EEEEEecCCChHHHHHHHHhhccccccCCcceeEEE
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWV 248 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 248 (444)
.|.|.|.+|+||||||+.+........-+.|..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 589999999999999999998754321112445553
No 278
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.47 E-value=0.0021 Score=52.18 Aligned_cols=21 Identities=48% Similarity=0.745 Sum_probs=19.5
Q ss_pred EEEEecCCChHHHHHHHHhhc
Q 047559 214 IPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (444)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 279
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.47 E-value=0.022 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 280
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.016 Score=58.11 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.8
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
-.+++|+|++|+||||++..+....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999998887653
No 281
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.47 E-value=0.033 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 69999999999999999999864
No 282
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.45 E-value=0.014 Score=51.95 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCC-CCCCcEEEEecCChHHHhhcCCCCcccCCC
Q 047559 284 IKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLA-AAPNSKIIVTTRHAHVAATMEPIQQYNLQC 347 (444)
Q Consensus 284 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTTr~~~va~~~~~~~~~~l~~ 347 (444)
+...+..++-++++|+.-. .+......+...+.. ...|..||++|.+...... ..++.++.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 4455556678999999844 233334444444432 2346778888887665442 44555544
No 283
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.44 E-value=0.045 Score=55.75 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=71.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|....+..+.+.+..-... -..|.|.|..|+||+.+|+.+++.....+ ...+-|++..-. ...+..
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~----~~pVLI~GE~GTGKe~lA~~IH~~S~r~~---~pfv~inC~~l~--e~lles-- 281 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARS----DATVLILGESGTGKELVAQAIHQLSGRRD---FPFVAINCGAIA--ESLLEA-- 281 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCcCHHHHHHHHHHhcCcCC---CCEEEeccccCC--hhHHHH--
Confidence 4899988888888776543221 25799999999999999999997532211 122334444322 222222
Q ss_pred HHhccCCCCcccHHH--HHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEecCCh
Q 047559 265 ESITFASCDLKALNE--VQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTTRHA 331 (444)
Q Consensus 265 ~~l~~~~~~~~~~~~--~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTr~~ 331 (444)
.+.+...+.-.... ...-+.+ ....=-|+||++.+........|...+.... ...+||.||...
T Consensus 282 -eLFG~~~gaftga~~~~~~Gl~e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 282 -ELFGYEEGAFTGARRGGRTGLIE--AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCA 358 (526)
T ss_pred -HhcCCcccccccccccccccchh--hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCC
Confidence 22221111000000 0000000 1123358999998776666666666654321 123788877543
No 284
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.44 E-value=0.004 Score=53.52 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=28.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD 252 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 252 (444)
..++.+.|+.|+|||.||+.+.+.... + .....+-++++.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~-~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-G-SERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--S-SCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-C-CccchHHHhhhc
Confidence 468999999999999999999876432 1 233555555554
No 285
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.42 E-value=0.023 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|.|||||++.+....
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987653
No 286
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.041 Score=56.08 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=74.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAV 288 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 288 (444)
...+.+.++|++|.|||.||+.+.+..+. +|- .+... .++.... ..........+...-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~---~fi-----~v~~~--------~l~sk~v-----Gesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRS---RFI-----SVKGS--------ELLSKWV-----GESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCC---eEE-----EeeCH--------HHhcccc-----chHHHHHHHHHHHHH
Confidence 44568999999999999999999985322 232 22211 1111100 111112222233333
Q ss_pred CCceEEEEEeCCCCCCh-----------hcHHHhhcccC--CCCCCcEEEEecCChHHHhh--cC--C-CCcccCCCCCh
Q 047559 289 DGKKLLLVLDDVWNEDY-----------CLWEDLKAPFL--AAAPNSKIIVTTRHAHVAAT--ME--P-IQQYNLQCLSD 350 (444)
Q Consensus 289 ~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~--~~~~gs~iivTTr~~~va~~--~~--~-~~~~~l~~L~~ 350 (444)
+..+..|++|+++..-. ....++...+. ....+..||-||........ .. . ...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 57789999999965210 12233333332 22334445556655443321 12 1 24688888899
Q ss_pred HhHHHHHHHhhc
Q 047559 351 EDCWSLFMMHAF 362 (444)
Q Consensus 351 ~~~~~lf~~~~~ 362 (444)
++..+.|+.+.-
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999988874
No 287
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.42 E-value=0.039 Score=50.70 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=86.8
Q ss_pred CcccccchhHHHHHHHHhcCC-CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDT-SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
..++|..--.+.++..+.+-- ...+.+.-+++.+|.+|+||.-.++.+.++....+.+- .....
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S---------------~~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS---------------PFVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc---------------hhHHH
Confidence 457787766677766665411 11126677999999999999999999987643222010 11111
Q ss_pred HHHHhccCCCCcccHHHHHHHHH----HHh-CCceEEEEEeCCCCCChhcHHHhhcccCCC--C-----CCcEEEEec--
Q 047559 263 LLESITFASCDLKALNEVQVQIK----RAV-DGKKLLLVLDDVWNEDYCLWEDLKAPFLAA--A-----PNSKIIVTT-- 328 (444)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~l~----~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--~-----~gs~iivTT-- 328 (444)
....+. -+....++.-..+|+ ..+ .-+|-|+|||+++.....-.+.|...+... . ...-.|+-|
T Consensus 147 fvat~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 147 FVATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred hhhhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 111111 122233333333333 333 457999999999887666666666555411 1 122333333
Q ss_pred CChHHHhh----c---CCCCcccCCCCChHhHHHHHHHhh
Q 047559 329 RHAHVAAT----M---EPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 329 r~~~va~~----~---~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
....++.. . .....++++.+++.-+..-|...+
T Consensus 225 gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~ 264 (344)
T KOG2170|consen 225 GGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKA 264 (344)
T ss_pred cchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhcccc
Confidence 33333322 1 222456666666665555555543
No 288
>PRK07667 uridine kinase; Provisional
Probab=96.40 E-value=0.0051 Score=54.14 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666664433 334899999999999999999998764
No 289
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.39 E-value=0.024 Score=48.88 Aligned_cols=23 Identities=48% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
++.++|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999988654
No 290
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.38 E-value=0.034 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999865
No 291
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.38 E-value=0.025 Score=50.30 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.++.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 292
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.38 E-value=0.013 Score=57.74 Aligned_cols=87 Identities=22% Similarity=0.174 Sum_probs=51.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC------CCCcccH-----HHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA------SCDLKAL-----NEV 280 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~------~~~~~~~-----~~~ 280 (444)
..++|+|..|+|||||++.+..... ...++++...-+.-++.++....+...... ..+.+.. ...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~----pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA----FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC----CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 5899999999999999998876532 223445554334445555555444433111 1111111 112
Q ss_pred HHHHHHHh--CCceEEEEEeCCCC
Q 047559 281 QVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 281 ~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
.-.+.+++ +++.+||++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 22345555 68899999999833
No 293
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.015 Score=56.20 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=48.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD-DFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
.++.++|+.|+||||++.++......+. ....+..++... .....+-++...+.++.......+..++...+. .+.+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 6899999999999999999987643221 112344554322 123344555555555443322222223333333 3344
Q ss_pred ceEEEEEeCCCC
Q 047559 291 KKLLLVLDDVWN 302 (444)
Q Consensus 291 kr~LlVlDdv~~ 302 (444)
+ =+|++|..-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 4566888843
No 294
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.014 Score=49.40 Aligned_cols=118 Identities=22% Similarity=0.221 Sum_probs=62.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.+++|+|..|.|||||.+.+..... .....+++......... .......+.... +.+.-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~----~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK----PTSGEILIDGKDIAKLP--LEELRRRIGYVP-QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCccEEEECCEEcccCC--HHHHHhceEEEe-eCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999987642 23455554332111100 001111111100 0111222233455556566
Q ss_pred eEEEEEeCCCCC-ChhcHHHhhcccCC-CCCCcEEEEecCChHHHhh
Q 047559 292 KLLLVLDDVWNE-DYCLWEDLKAPFLA-AAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 292 r~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTTr~~~va~~ 336 (444)
+-++++|+.-.. |......+...+.. ...+..+|++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 789999998542 33333334333332 1225678888887666543
No 295
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.15 Score=52.82 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=60.3
Q ss_pred CcccccchhHHHHHHHHhcCC------CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDT------SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.++-|-++-+.+|.+-+.-+- +.+-.+.+-|.++|++|.|||-||+.|+..... .|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL--------~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL--------NFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee--------eEEeecCH----
Confidence 457788888888887654311 011133467899999999999999999976422 24555442
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNE 303 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 303 (444)
+++ ...-+ .+.+.+.+...+.=..++++|+||++++.
T Consensus 740 ELL----NMYVG-----qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELL----NMYVG-----QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHH----HHHhc-----chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222 11111 11222233333333568999999999874
No 296
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0064 Score=53.61 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+.+|+|.|.+|+||||+|+.+++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999863
No 297
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.34 E-value=0.034 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|.|..|+|||||++.+....
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998653
No 298
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.33 E-value=0.025 Score=52.37 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=67.0
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEE---eCCCCCHHHHHHHHHHHhc
Q 047559 192 DKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVC---VSDDFDVLNISRALLESIT 268 (444)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~~il~~l~ 268 (444)
..+.++..|... ....-+.|+|+.|.|||||.+.+..... .....+++. +.......++... ...+.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~~ei~~~-~~~~~ 166 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDERSEIAGC-VNGVP 166 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhHHHHHHH-hcccc
Confidence 345555555532 2346899999999999999999987642 223344442 1110111222211 11110
Q ss_pred cCC-----CCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHhh
Q 047559 269 FAS-----CDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 269 ~~~-----~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~ 336 (444)
... ....+... ..-+...+ ...+-+|++|++-. ...+..+...+. .|..||+||....+...
T Consensus 167 q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 167 QHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred cccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 000 00011111 11223333 24678999999843 344555554442 47789999987666443
No 299
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.03 Score=50.02 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+++|+|+.|.|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999854
No 300
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.32 E-value=0.0052 Score=54.52 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=58.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCC---cccHHHHHHHHHHHh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCD---LKALNEVQVQIKRAV 288 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~~~l 288 (444)
.++.|.|+.|.||||+.+.+....-.. + ...++... .....++..|+..+...... ......-...+...+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la--~--~G~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMA--Q--IGCFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHH--H--cCCCcchh--hcCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 689999999999999998886432110 0 11111111 00112222333222221110 111111111122222
Q ss_pred --CCceEEEEEeCCCCC-Chhc----HHHhhcccCCCCCCcEEEEecCChHHHhhcC
Q 047559 289 --DGKKLLLVLDDVWNE-DYCL----WEDLKAPFLAAAPNSKIIVTTRHAHVAATME 338 (444)
Q Consensus 289 --~~kr~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~iivTTr~~~va~~~~ 338 (444)
..++-|+++|+.-.. +..+ ...+...+.. .|+.+|++|....++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 356789999998442 1222 1122233332 3789999999988887654
No 301
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.32 E-value=0.038 Score=49.45 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|..|.|||||++.+....
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998653
No 302
>PRK05439 pantothenate kinase; Provisional
Probab=96.31 E-value=0.026 Score=53.11 Aligned_cols=82 Identities=15% Similarity=0.017 Sum_probs=43.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHh-ccCCCCcccHHHHHHHHHHH
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESI-TFASCDLKALNEVQVQIKRA 287 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l-~~~~~~~~~~~~~~~~l~~~ 287 (444)
...-+|+|.|.+|+||||+|+.+........ ....+.-++...=+.....+..- ..+ ....++.-+.+.+...|...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~-~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWP-EHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhC-CCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHH
Confidence 4568999999999999999998876432110 11122333333322222222110 001 11123455666677777766
Q ss_pred hCCce
Q 047559 288 VDGKK 292 (444)
Q Consensus 288 l~~kr 292 (444)
..++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66664
No 303
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.035 Score=53.43 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=51.3
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD-FDVLNISRALLESITFASCDLKALNEVQVQIKRAV 288 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 288 (444)
+.+++.|+|+.|+||||++..+....... -..+.+++.... ....+-++...+.++.......+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~---g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 35899999999999999999988654222 123455655332 12244455555544432222334445544444332
Q ss_pred C-CceEEEEEeCCCC
Q 047559 289 D-GKKLLLVLDDVWN 302 (444)
Q Consensus 289 ~-~kr~LlVlDdv~~ 302 (444)
. +..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3345788888744
No 304
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.31 E-value=0.049 Score=50.68 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=36.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESI 267 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l 267 (444)
.++.|.|.+|+||||++.++....... +-..++|++... +..++...+...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEccc--CHHHHHHHHHHHH
Confidence 588999999999999999887654221 234677887655 3455666655543
No 305
>PRK08233 hypothetical protein; Provisional
Probab=96.30 E-value=0.0034 Score=54.54 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|+|.|.+|+||||||+.+....
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 799999999999999999998754
No 306
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.30 E-value=0.039 Score=57.89 Aligned_cols=129 Identities=18% Similarity=0.182 Sum_probs=68.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
+-+.|+|++|+|||++|+.+.....+ .| +.++.+. +. ..... .....+...+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~---~f---~~is~~~------~~----~~~~g-----~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV---PF---FTISGSD------FV----EMFVG-----VGASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC---CE---EEEehHH------hH----Hhhhc-----ccHHHHHHHHHHHHhcC
Confidence 45999999999999999999876422 22 2222221 11 00100 01111222233333456
Q ss_pred eEEEEEeCCCCCCh----------hcHHH----hhcccCC--CCCCcEEEEecCChHHHh--hcCC---CCcccCCCCCh
Q 047559 292 KLLLVLDDVWNEDY----------CLWED----LKAPFLA--AAPNSKIIVTTRHAHVAA--TMEP---IQQYNLQCLSD 350 (444)
Q Consensus 292 r~LlVlDdv~~~~~----------~~~~~----l~~~l~~--~~~gs~iivTTr~~~va~--~~~~---~~~~~l~~L~~ 350 (444)
+++|++|+++.... ..+.. +...+.. ...+.-+|.||...+... ...+ ...+.+...+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 78999999965310 11222 2111211 233455666777655332 1122 24577888888
Q ss_pred HhHHHHHHHhh
Q 047559 351 EDCWSLFMMHA 361 (444)
Q Consensus 351 ~~~~~lf~~~~ 361 (444)
++-.+++..+.
T Consensus 325 ~~R~~Il~~~~ 335 (644)
T PRK10733 325 RGREQILKVHM 335 (644)
T ss_pred HHHHHHHHHHh
Confidence 88888887665
No 307
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.031 Score=54.51 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=50.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccC-CcceeEEEEeCCCCCH--HHHHHHHHHHhccCCCCcccHHHHHHHHHHH
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDS-KFDVKAWVCVSDDFDV--LNISRALLESITFASCDLKALNEVQVQIKRA 287 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 287 (444)
..++.++|+.|+||||.+..+......... .-..+..+++. ++.. .+-++...+.++...........+...+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 379999999999999999888765432210 11233444443 3322 2335555554544322233444444444443
Q ss_pred hCCceEEEEEeCCCCC
Q 047559 288 VDGKKLLLVLDDVWNE 303 (444)
Q Consensus 288 l~~kr~LlVlDdv~~~ 303 (444)
...-+|++|.....
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 33458888888443
No 308
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.28 E-value=0.026 Score=55.60 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=52.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFA-------SCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 278 (444)
..++|+|..|+|||||++.+.+.. ..+..+.+-++... .+.++....+..-+.. ..+.+...
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 689999999999999999998763 33455666666544 3445555454432111 11111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCC
Q 047559 279 EVQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
.....+.+++ +++++|+++||+-
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1223355665 6889999999993
No 309
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.27 E-value=0.03 Score=47.81 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=62.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCccee--EEEEeCCCCCHHHHHHHHHHHhccC---------CCCc-c---c
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVK--AWVCVSDDFDVLNISRALLESITFA---------SCDL-K---A 276 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~--~wv~vs~~~~~~~~~~~il~~l~~~---------~~~~-~---~ 276 (444)
..|-|++..|.||||.|..+.-+..-. -+.+. -|+-..........+..+ .+... ..+. . .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~--g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH--GKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 577888889999999997776553221 12221 133322223333344332 11100 0010 1 1
Q ss_pred HHHHHHHHHHHhCCceE-EEEEeCCCC---CChhcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 277 LNEVQVQIKRAVDGKKL-LLVLDDVWN---EDYCLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 277 ~~~~~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
........++.+...+| |+|||++-. ......+.+...+.....+.-||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 12223344555544444 999999832 122345566666666677889999999753
No 310
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.27 E-value=0.022 Score=50.62 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999865
No 311
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.034 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 312
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.27 E-value=0.0076 Score=60.50 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=49.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEE-EEeCCCC-CHHHHHHHHHHHhccCCCCccc-----HHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAW-VCVSDDF-DVLNISRALLESITFASCDLKA-----LNEVQVQI 284 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w-v~vs~~~-~~~~~~~~il~~l~~~~~~~~~-----~~~~~~~l 284 (444)
.-..|+|++|+|||||++.+.+.... . +.++.++ +-|.... .+.++.+.+-..+-.+..+... ...+.-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-N-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-c-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999986422 2 4444443 3444433 2323322221111112222111 12233345
Q ss_pred HHHh--CCceEEEEEeCCC
Q 047559 285 KRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 285 ~~~l--~~kr~LlVlDdv~ 301 (444)
.+++ .++.+||++|++-
T Consensus 495 Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHcCCCEEEEEeCch
Confidence 5565 7899999999993
No 313
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.26 E-value=0.019 Score=52.75 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=57.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhcccc-ccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCcccHH----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAV-EDSKFDVKAWVCVSDDF-DVLNISRALLESITFA-------SCDLKALN---- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~---- 278 (444)
.-++|.|-.|+|||+|+..+.++... ...+-+.++++-+++.. +..+++..+...-... ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 56899999999999999998876431 11135788899888764 4556666665431111 11111111
Q ss_pred -HHHHHHHHHh--C-CceEEEEEeCCCC
Q 047559 279 -EVQVQIKRAV--D-GKKLLLVLDDVWN 302 (444)
Q Consensus 279 -~~~~~l~~~l--~-~kr~LlVlDdv~~ 302 (444)
-....+.+++ + ++++|+++||+-.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1123356666 3 7899999999943
No 314
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.26 E-value=0.0042 Score=66.25 Aligned_cols=179 Identities=18% Similarity=0.139 Sum_probs=85.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccc-------------cccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccH
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRA-------------VEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKAL 277 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~-------------~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~ 277 (444)
.+++.|.|+.+.||||+.+.+.-..- ..-+.|+. ++..++...++..-+..+.. ..
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~----------~m 395 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSG----------HM 395 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHH----------HH
Confidence 47899999999999999988853210 00001222 23333332222211111100 11
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHh----hcccCCCCCCcEEEEecCChHHHhhcCCCCcc-cCCCCChH
Q 047559 278 NEVQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDL----KAPFLAAAPNSKIIVTTRHAHVAATMEPIQQY-NLQCLSDE 351 (444)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTTr~~~va~~~~~~~~~-~l~~L~~~ 351 (444)
..... +...+ +.+-|++||++-.. ++..-..+ ...+. ..|+.+|+||....+.........+ .....-+.
T Consensus 396 ~~~~~-Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~ 471 (782)
T PRK00409 396 TNIVR-ILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDE 471 (782)
T ss_pred HHHHH-HHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEec
Confidence 11111 22222 46789999999543 32222223 22232 3478999999998877654322111 11000011
Q ss_pred hHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHHhc
Q 047559 352 DCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSKRHDEWDEILNS 412 (444)
Q Consensus 352 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~ 412 (444)
+... +..+...+ .+. ...|-.|++.+ |+|-.+..-|.-+.......+..++++
T Consensus 472 ~~l~-~~Ykl~~G-~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~ 524 (782)
T PRK00409 472 ETLR-PTYRLLIG-IPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIAS 524 (782)
T ss_pred CcCc-EEEEEeeC-CCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 1111 11111111 111 12345566666 788888888887665544444444443
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.26 E-value=0.042 Score=50.05 Aligned_cols=88 Identities=15% Similarity=0.267 Sum_probs=53.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCC-----------------
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFAS----------------- 271 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~----------------- 271 (444)
+.-.++.|.|.+|+|||+||.++....- + .-..++|++... ++.++.+.+. +++...
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~--~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~ 92 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-Q--MGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTG 92 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-H--cCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccc
Confidence 3448999999999999999998765421 1 345677887655 4445555432 221100
Q ss_pred -------------CCcccHHHHHHHHHHHhCC-ceEEEEEeCCCC
Q 047559 272 -------------CDLKALNEVQVQIKRAVDG-KKLLLVLDDVWN 302 (444)
Q Consensus 272 -------------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~ 302 (444)
....+..++...+.+.+.. +.-++|+|.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 93 GIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0123556666666666533 344799999844
No 316
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.13 Score=47.87 Aligned_cols=42 Identities=7% Similarity=0.045 Sum_probs=32.9
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA 331 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~ 331 (444)
++.=++|+|+++..+...++.+...+.....++.+|++|.+.
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 455688999998888888999998888777777777666653
No 317
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.047 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|..|.|||||++.+....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 699999999999999999988653
No 318
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.051 Score=49.14 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|.|||||.+.+....
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999999997653
No 319
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.25 E-value=0.0041 Score=55.45 Aligned_cols=26 Identities=42% Similarity=0.636 Sum_probs=22.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+...+|+|+|++|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34479999999999999999999865
No 320
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.25 E-value=0.073 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999754
No 321
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.25 E-value=0.0033 Score=45.06 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|.|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998763
No 322
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.24 E-value=0.019 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999998875
No 323
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.24 E-value=0.045 Score=48.48 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998754
No 324
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.23 E-value=0.035 Score=50.58 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCC--CCCCcEEEEecCChHHHhhcC
Q 047559 280 VQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLA--AAPNSKIIVTTRHAHVAATME 338 (444)
Q Consensus 280 ~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTTr~~~va~~~~ 338 (444)
....+...|..+.=+|+||+--+. |...--++...+.. ...|..||+++.+-+.|...+
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 344567778888888999987432 11111122222222 245778999999988886543
No 325
>PRK08149 ATP synthase SpaL; Validated
Probab=96.23 E-value=0.02 Score=56.25 Aligned_cols=86 Identities=21% Similarity=0.299 Sum_probs=52.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhccC-------CCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD-FDVLNISRALLESITFA-------SCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~il~~l~~~-------~~~~~~~~----- 278 (444)
..++|+|..|+|||||++.+.... ..+..+...+... -++.++....+...... ..+.+...
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 589999999999999999998753 2334444444433 34556666665532211 11211111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCCC
Q 047559 279 EVQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
.....+.+++ +++++||++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1223345555 68999999999943
No 326
>PTZ00301 uridine kinase; Provisional
Probab=96.22 E-value=0.0038 Score=55.54 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4799999999999999999887653
No 327
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.055 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998754
No 328
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.21 E-value=0.0044 Score=55.30 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.1
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+..+|+|.|.+|+|||||++.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998763
No 329
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.19 E-value=0.029 Score=55.61 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..+|.++|.+|+||||++..++....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 47999999999999999999886543
No 330
>PRK13949 shikimate kinase; Provisional
Probab=96.19 E-value=0.055 Score=46.44 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
-|.|+|++|+||||+++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998764
No 331
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.18 E-value=0.03 Score=51.35 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|+|||||++.+....
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998653
No 332
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.18 E-value=0.026 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
....+|+|.|..|+||||+|+.+..-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999877543
No 333
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.17 E-value=0.038 Score=54.62 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.0
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...++.++|++|+||||++..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999998776654
No 334
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.16 E-value=0.037 Score=50.13 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=31.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
-.++.|.|.+|+||||||.++..... +. . ..+++++ ...+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~-~~-g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL-QN-G-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hC-C-CcEEEEe--CCCCHHHHHHHH
Confidence 36999999999999999866655431 12 1 2445665 333455666655
No 335
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.029 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999999863
No 336
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.15 E-value=0.014 Score=56.81 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=37.9
Q ss_pred CCcccccchhHHHHHHHHhcC--------CCCCCCCceEEEEEecCCChHHHHHHHHhhccc
Q 047559 183 ERAVFGRQQDKAKMLEMVLTD--------TSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
+..++|.++.++.+...+... .-......+-|.++|++|+|||++|+.+.....
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346888888888886655431 000112236789999999999999999987753
No 337
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.15 E-value=0.022 Score=55.93 Aligned_cols=87 Identities=22% Similarity=0.200 Sum_probs=49.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC-------CCCcccHHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA-------SCDLKALNE----- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~-------~~~~~~~~~----- 279 (444)
..++|+|..|+|||||++.+..... ....++....-+.-.+.++....+..-... ..+......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 5899999999999999998887532 122233322233344555555544332111 111111111
Q ss_pred HHHHHHHHh--CCceEEEEEeCCCC
Q 047559 280 VQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 280 ~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
....+.+++ +++++||++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 222355666 68899999999933
No 338
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.14 E-value=0.039 Score=52.33 Aligned_cols=85 Identities=24% Similarity=0.274 Sum_probs=50.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhcc-------CCCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD-DFDVLNISRALLESITF-------ASCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~il~~l~~-------~~~~~~~~~----- 278 (444)
..++|+|..|.|||||.+.+.... ..+..+..-+.. .-++.++....+..-.. ...+.....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~-----~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGT-----TADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC-----CCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 578999999999999999988753 233444444443 34555555555443211 111111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCC
Q 047559 279 EVQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
...-.+.+++ +++.+||++||+-
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccch
Confidence 1222344555 6889999999983
No 339
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.14 E-value=0.038 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 340
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.14 E-value=0.029 Score=54.22 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAV 288 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 288 (444)
...+-+-|+|..|.|||.|.-.+|+...++. . ......++..++.+.+.........+. .+.+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l~----~va~~l 124 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-K----------RRVHFHEFMLDVHSRLHQLRGQDDPLP----QVADEL 124 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccc-c----------ccccccHHHHHHHHHHHHHhCCCccHH----HHHHHH
Confidence 4457899999999999999999998754421 0 011122444444444433222222233 344455
Q ss_pred CCceEEEEEeCCCCCChhcHHHhhcccCC-CCCCcEEEEecC
Q 047559 289 DGKKLLLVLDDVWNEDYCLWEDLKAPFLA-AAPNSKIIVTTR 329 (444)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTr 329 (444)
.++..||.||++.-.+..+=-.+...|.. ...|..+|.||.
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 56677999999866554431112222221 245665555554
No 341
>PRK06762 hypothetical protein; Provisional
Probab=96.13 E-value=0.0045 Score=52.99 Aligned_cols=24 Identities=38% Similarity=0.554 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998763
No 342
>PRK14527 adenylate kinase; Provisional
Probab=96.13 E-value=0.0096 Score=52.31 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..+|.|+|++|+||||+|+.+.+...
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999987653
No 343
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.12 E-value=0.087 Score=47.94 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999754
No 344
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.12 E-value=0.045 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+..|+|++|+|||+|+..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 6789999999999999988754
No 345
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.12 E-value=0.045 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 346
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.16 Score=49.50 Aligned_cols=152 Identities=15% Similarity=0.117 Sum_probs=77.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
|--.++||+|.|||++..++++.. .|+..- +..+...+-.+ ++.++.. ...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n~d-Lr~LL~~----------------------t~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLDSD-LRHLLLA----------------------TPN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCcHH-HHHHHHh----------------------CCC
Confidence 567899999999999999999864 343321 12222111111 2222221 223
Q ss_pred eEEEEEeCCCCCC------h------------hcHHHhhcccC---CCCCCcEEE-EecCChHHH--hhcCCC---Cccc
Q 047559 292 KLLLVLDDVWNED------Y------------CLWEDLKAPFL---AAAPNSKII-VTTRHAHVA--ATMEPI---QQYN 344 (444)
Q Consensus 292 r~LlVlDdv~~~~------~------------~~~~~l~~~l~---~~~~gs~ii-vTTr~~~va--~~~~~~---~~~~ 344 (444)
+-+||+.|++..- . ..+..|..++. ..+.+-||| +||...+-. ..+.+. -.+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 5566777764420 0 11222333221 112123555 566654332 122332 3477
Q ss_pred CCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 047559 345 LQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLR 399 (444)
Q Consensus 345 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 399 (444)
+.-=+.+....||.+...... ..+ +..+|.+...|.-+.-..+++.|-
T Consensus 367 mgyCtf~~fK~La~nYL~~~~---~h~----L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE---DHR----LFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC---Ccc----hhHHHHHHhhcCccCHHHHHHHHh
Confidence 888888888888887763221 122 234455555565555555555443
No 347
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.11 E-value=0.042 Score=50.51 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|.|||||++.++...
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998653
No 348
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.10 E-value=0.013 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 349
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.10 E-value=0.015 Score=56.66 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=38.4
Q ss_pred CCcccccchhHHHHHHHHhcC--------CCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 183 ERAVFGRQQDKAKMLEMVLTD--------TSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...++|.+..+..+..++... ..........+.++|++|+|||+||+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999888888777441 00000123678999999999999999998764
No 350
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.10 E-value=0.025 Score=55.63 Aligned_cols=85 Identities=27% Similarity=0.331 Sum_probs=51.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhcc-------CCCCcccHHH----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD-FDVLNISRALLESITF-------ASCDLKALNE---- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~il~~l~~-------~~~~~~~~~~---- 279 (444)
..++|+|..|+|||||++.+.+.. +.+..++..++.. ..+.+++.+....-.. ...+.+....
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 589999999999999999988753 3455566655543 4444555554321100 0111111111
Q ss_pred -HHHHHHHHh--CCceEEEEEeCCC
Q 047559 280 -VQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 280 -~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
....+.+++ +++++||++||+-
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 122355565 6889999999994
No 351
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.10 E-value=0.05 Score=57.30 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..|+|+|..|+|||||++.+..-
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998653
No 352
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.10 E-value=0.044 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|.|||||++.++...
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998653
No 353
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.09 E-value=0.053 Score=49.06 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=61.4
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCC------------------
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFAS------------------ 271 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~------------------ 271 (444)
.-.++.|.|.+|+|||+|+.++..... + .-...+|++.... ..++... .++++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~--~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R--DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h--cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 347999999999999999998765421 1 2346678876443 3333322 22221100
Q ss_pred ----C--CcccHHHHHHHHHHHhCC---ceEEEEEeCCCCC---ChhcHHHhhcccCC--CCCCcEEEEecC
Q 047559 272 ----C--DLKALNEVQVQIKRAVDG---KKLLLVLDDVWNE---DYCLWEDLKAPFLA--AAPNSKIIVTTR 329 (444)
Q Consensus 272 ----~--~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTTr 329 (444)
. ...+.+++...+.+.++. +.-++|+|.+... +...-..+...+.. ...|..+|+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0 012455566666655532 3458899997432 11111111111111 245888888886
No 354
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.039 Score=51.05 Aligned_cols=90 Identities=21% Similarity=0.156 Sum_probs=57.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHH----hccCCC-CcccHHHHHHH
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLES----ITFASC-DLKALNEVQVQ 283 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~----l~~~~~-~~~~~~~~~~~ 283 (444)
+.-+++=|+|+.|+||||+|.+++-.... .-..++|++--+.++++.+.. +... +....+ ......+....
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~---~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQK---PGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhc---CCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 44589999999999999999998765332 334789999999888876533 3333 211111 12222233344
Q ss_pred HHHHhCCceEEEEEeCCCC
Q 047559 284 IKRAVDGKKLLLVLDDVWN 302 (444)
Q Consensus 284 l~~~l~~kr~LlVlDdv~~ 302 (444)
+......+--|||+|.+-.
T Consensus 134 ~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHhccCCCCEEEEecCcc
Confidence 4444444466999999844
No 355
>PRK06547 hypothetical protein; Provisional
Probab=96.08 E-value=0.0096 Score=51.24 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
....+|.|.|++|+||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445899999999999999999998764
No 356
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.06 E-value=0.04 Score=48.50 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=58.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc--ccccCCcceeEEEE---------------eCCCCC---HHHHHHHHHHHhccCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR--AVEDSKFDVKAWVC---------------VSDDFD---VLNISRALLESITFAS 271 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~~f~~~~wv~---------------vs~~~~---~~~~~~~il~~l~~~~ 271 (444)
.+++|.|+.|.|||||.+.+..-. .. ..+.+++. +.+... ...+...+.-....
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~----~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-- 109 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLG----VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL-- 109 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCC----CceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--
Confidence 689999999999999999998753 21 11222211 111110 01122221110000
Q ss_pred CCcccHHHHHHHHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCC-CCCCcEEEEecCChH
Q 047559 272 CDLKALNEVQVQIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLA-AAPNSKIIVTTRHAH 332 (444)
Q Consensus 272 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTTr~~~ 332 (444)
...+.-+...-.+...+-.++-++++|+.-+ .|......+...+.. ...|..||++|.+..
T Consensus 110 ~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 0111122222345555656677899999844 233334444444432 123677888888753
No 357
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.06 E-value=0.005 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.8
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+|.|+|++|+||||+++.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999865
No 358
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.06 E-value=0.072 Score=48.03 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||++.+...
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 359
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.05 E-value=0.0099 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
++++|+|+.|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 69999999999999999988643
No 360
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.05 E-value=0.067 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+...
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 361
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.078 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999854
No 362
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.05 E-value=0.012 Score=63.62 Aligned_cols=185 Identities=16% Similarity=0.133 Sum_probs=94.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcccccc-CCcceeEEEEeCCCC----CHHH-HHHHHHHHhccCCCCcccHHHHHHHH
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVED-SKFDVKAWVCVSDDF----DVLN-ISRALLESITFASCDLKALNEVQVQI 284 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~----~~~~-~~~~il~~l~~~~~~~~~~~~~~~~l 284 (444)
..-+.|+|.+|.||||+.+.+.-....+. ..=+..+++.+.... ...+ .+...+.......... .......
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~---~~~~~~~ 298 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIA---KQLIEAH 298 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCc---chhhHHH
Confidence 35799999999999999988864332211 012334454433111 1111 1122222221111111 1111222
Q ss_pred HHHhCCceEEEEEeCCCCCChhc----HHHhhcccCCCCCCcEEEEecCChHHHhhcCCCCcccCCCCChHhHHHHHHHh
Q 047559 285 KRAVDGKKLLLVLDDVWNEDYCL----WEDLKAPFLAAAPNSKIIVTTRHAHVAATMEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 285 ~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~~~gs~iivTTr~~~va~~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
.++++..++|+++|.++...... ...+.. +.+.-+.+.+|+|+|....-........+++..+.++.-.......
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~-f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~ 377 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINK-FLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQ 377 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHH-HhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHH
Confidence 57788999999999986643221 112222 2334567899999997766655444556667666666554433322
Q ss_pred h--------ccCCCCC---ccchHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 047559 361 A--------FVGQDIT---AQQISDLFREKVVGKCGGLPLAAKTLGGLLR 399 (444)
Q Consensus 361 ~--------~~~~~~~---~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 399 (444)
. ++..... ....+..-...-++.....|+.+.+.+..-.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 378 WLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 1 1111111 0011111112334445788999988885444
No 363
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.065 Score=47.86 Aligned_cols=154 Identities=16% Similarity=0.248 Sum_probs=80.3
Q ss_pred ccc-cchhHHHHHHHHhcCCC-------CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 186 VFG-RQQDKAKMLEMVLTDTS-------SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 186 ~vG-r~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
++| -+..+.+|.+.+.-+-. -+-.+.+-+.++|++|.|||-||+.|+.. .++.|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh--------t~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH--------TDCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh--------cceEEEEechH----
Confidence 444 45666666555432211 01144578899999999999999999853 34567777763
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-----------hcHH---HhhcccCC--CCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY-----------CLWE---DLKAPFLA--AAPN 321 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~---~l~~~l~~--~~~g 321 (444)
++.+..+.. ...-..++.-.-+ ..-+-+|+.|++++... +... ++...+.. ..+.
T Consensus 216 elvqk~ige------gsrmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 216 ELVQKYIGE------GSRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHHhhh------hHHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 222221110 0001111111111 23467888888866311 1111 12222221 2456
Q ss_pred cEEEEecCChHHHh--hcCCC---CcccCCCCChHhHHHHHHHh
Q 047559 322 SKIIVTTRHAHVAA--TMEPI---QQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 322 s~iivTTr~~~va~--~~~~~---~~~~l~~L~~~~~~~lf~~~ 360 (444)
-+||+.|..-++.. .+.+. ..++..+-+++.-.++++-+
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 68888776554432 22332 45777777777666666544
No 364
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.04 E-value=0.044 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||++.+...
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 365
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.036 Score=51.87 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=32.3
Q ss_pred HHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCCC--CCCcEEEEecCChHHHh
Q 047559 283 QIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLAA--APNSKIIVTTRHAHVAA 335 (444)
Q Consensus 283 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTr~~~va~ 335 (444)
.|...+-.++-+|+||+.... +...-..+...+..- ..|..||++|.+.....
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 355566677789999998542 333334444444331 23778888888766554
No 366
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.03 E-value=0.047 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 367
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.02 E-value=0.019 Score=58.73 Aligned_cols=133 Identities=12% Similarity=0.013 Sum_probs=70.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|....+.++++.+..-...+ ..|.|+|..|+||+.+|+.++..... .-...+.++++.-. .+.+..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~----~pvlI~GE~GtGK~~lA~aiH~~s~r---~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLD----APLLITGDTGTGKDLLAYACHLRSPR---GKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCC----CCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeccccCC--HHHHHH--
Confidence 58898888887777664322211 45889999999999999998764321 11233455555432 222222
Q ss_pred HHhccCCCCcc-cHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEecCCh
Q 047559 265 ESITFASCDLK-ALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTTRHA 331 (444)
Q Consensus 265 ~~l~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTr~~ 331 (444)
.+.+...... .......-+.+ ....-.|+||+++.........|...+..+. ...+||.||...
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 1221111000 00000000000 1223457899998876666666666554321 134788877654
No 368
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.02 E-value=0.0098 Score=56.26 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=44.5
Q ss_pred cCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 182 TERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
....|+|.++.++++++.+.....+....-+|+.++|+.|.|||||+..+-+-
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999987755444466799999999999999999988765
No 369
>PRK10867 signal recognition particle protein; Provisional
Probab=96.02 E-value=0.035 Score=54.88 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=20.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+|.++|++|+||||++..++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 479999999999999977666543
No 370
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.3 Score=45.00 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=57.3
Q ss_pred cccccchhHHHHHHHHhcCC------CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDT------SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLN 258 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 258 (444)
++.|-+..++.|.+...-+- .+....-+-|.++|++|.||+.||+.|..... ..|++||...
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--------STFFSvSSSD---- 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSD---- 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--------CceEEeehHH----
Confidence 46666666666665432211 01114468899999999999999999997642 2345555421
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCC
Q 047559 259 ISRALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWN 302 (444)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~ 302 (444)
+.+...+ ..+.+...|.+.. ..|+-+|++|.++.
T Consensus 202 ----LvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 ----LVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ----HHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1111111 1123444444444 56889999999965
No 371
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.00 E-value=0.028 Score=55.37 Aligned_cols=85 Identities=24% Similarity=0.329 Sum_probs=53.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCcccHHH----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFA-------SCDLKALNE---- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 279 (444)
..++|+|..|+|||||.+.+++.. ..+.++++-++... .+.++....+..-... ..+.+....
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 689999999999999999998863 44677788777654 4445554433321110 111111111
Q ss_pred -HHHHHHHHh--CCceEEEEEeCCC
Q 047559 280 -VQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 280 -~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
....+.+++ +++++|+++||+-
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 122355555 6899999999994
No 372
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.00 E-value=0.031 Score=55.25 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=50.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC-------CCCcccHH-----H
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA-------SCDLKALN-----E 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~-------~~~~~~~~-----~ 279 (444)
..++|.|..|+|||||++.+...... -..+++...-+...+.++.+.+...-... ..+.+... .
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 68999999999999999999865321 12344433334445555555554432111 11111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEeCCC
Q 047559 280 VQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 280 ~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
....+.+++ +++++|+++||+-
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 222355555 6889999999993
No 373
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.99 E-value=0.093 Score=46.53 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|.|+.|.|||||++.+..-.
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcC
Confidence 689999999999999999998754
No 374
>PRK13948 shikimate kinase; Provisional
Probab=95.99 E-value=0.093 Score=45.55 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...|.++|+.|+||||+++.+.+..
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998764
No 375
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.96 E-value=0.017 Score=48.63 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=18.3
Q ss_pred EEecCCChHHHHHHHHhhcc
Q 047559 216 IVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 216 I~G~~GiGKTtLa~~v~~~~ 235 (444)
|+|++|+||||+|+.+....
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 78999999999999999864
No 376
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.95 E-value=0.021 Score=47.94 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
++.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998764
No 377
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.062 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 69999999999999999999854
No 378
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.011 Score=48.31 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=40.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.-|.|.|.+|+|||||+.++...... -|+++|+-.....+....=+.. ....-+.+.+...|..++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~--------~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGL--------EYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCC--------ceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 45889999999999999999865322 3677665332222221111111 112345566666777666443
No 379
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.92 E-value=0.072 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|.|+.|.|||||.+.+..-
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 380
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.085 Score=45.21 Aligned_cols=52 Identities=23% Similarity=0.193 Sum_probs=31.3
Q ss_pred HHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccC-CCCCCcEEEEecCChH
Q 047559 281 QVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFL-AAAPNSKIIVTTRHAH 332 (444)
Q Consensus 281 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~iivTTr~~~ 332 (444)
.-.+.+..-.++-|.+||+.... +...-..+...+. +...|..||.||-.+.
T Consensus 138 RvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 33456666788999999998543 2222222222222 3456778999987553
No 381
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.89 E-value=0.024 Score=53.46 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=51.0
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHH
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQI 284 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 284 (444)
.-+++-|+|+.|+||||||..+..... . .-..++|+.....++... ++.++.... .+...++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q--~-~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQ--K-QGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--H-TT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhh--c-ccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 347999999999999999998886532 2 345788999888776543 333333211 122334445555
Q ss_pred HHHhC-CceEEEEEeCCCC
Q 047559 285 KRAVD-GKKLLLVLDDVWN 302 (444)
Q Consensus 285 ~~~l~-~kr~LlVlDdv~~ 302 (444)
..+++ +.--++|+|.|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 55554 3445899999855
No 382
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.89 E-value=0.043 Score=53.94 Aligned_cols=85 Identities=24% Similarity=0.255 Sum_probs=49.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhcc-------CCCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD-FDVLNISRALLESITF-------ASCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~il~~l~~-------~~~~~~~~~----- 278 (444)
..++|+|..|.|||||++.+.... ..+..+...+... -...++...+...-.. ...+.+...
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 579999999999999999888653 2334444555543 3344444444432110 111111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCC
Q 047559 279 EVQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
.....+.+++ +++++||++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 1222345555 6889999999993
No 383
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.071 Score=48.46 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCCCCCCcEEEEecCChHHHhh
Q 047559 283 QIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 283 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~ 336 (444)
.+...+-.++-+|+||+..+ .+......+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 35556667778999999854 2333334444444332226678888887766543
No 384
>PRK05922 type III secretion system ATPase; Validated
Probab=95.87 E-value=0.039 Score=54.33 Aligned_cols=86 Identities=15% Similarity=0.247 Sum_probs=50.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhccCC-------CCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD-DFDVLNISRALLESITFAS-------CDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~il~~l~~~~-------~~~~~~~----- 278 (444)
..++|+|..|+|||||.+.+.... ..+....+.++. .....+++.+......... .+.+...
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 579999999999999999998763 233444444443 2334455555443322211 1111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCCC
Q 047559 279 EVQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
.....+.+++ +++++|+++||+-.
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223455666 68899999999933
No 385
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.87 E-value=0.033 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEecCCChHHHHHHHHhhcc
Q 047559 214 IPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~ 235 (444)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998763
No 386
>PRK14974 cell division protein FtsY; Provisional
Probab=95.85 E-value=0.069 Score=51.06 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.0
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...++.++|++|+||||++..++...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999888887654
No 387
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.06 Score=48.85 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|..|.|||||.+.+....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999999998653
No 388
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.85 E-value=0.0053 Score=48.33 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=19.2
Q ss_pred EEEEecCCChHHHHHHHHhhcc
Q 047559 214 IPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~ 235 (444)
|.|+|.+|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987663
No 389
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.85 E-value=0.024 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEecCCChHHHHHHHHhhcc
Q 047559 214 IPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~ 235 (444)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6889999999999999998754
No 390
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.85 E-value=0.026 Score=56.05 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=56.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFA-------SCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 278 (444)
.-++|+|.+|+|||||+..+..... +. +-+.++++-++... .+.+++..+...-... ..+.+...
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 5799999999999999988887643 22 56788888777643 4556666665432111 11111111
Q ss_pred HHHHHHHHHh--C-CceEEEEEeCC
Q 047559 279 EVQVQIKRAV--D-GKKLLLVLDDV 300 (444)
Q Consensus 279 ~~~~~l~~~l--~-~kr~LlVlDdv 300 (444)
.....+.+++ + ++++|+++|++
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 1233456666 3 89999999999
No 391
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.82 E-value=0.027 Score=48.28 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=43.0
Q ss_pred EEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC--c
Q 047559 214 IPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG--K 291 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~--k 291 (444)
+.|.|.+|+|||++|.++... .....+++.-...++.+ +...|.+ .....+......+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI~~-H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERIAR-HRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHHHH-HHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 679999999999999998754 22355666666666542 3333322 111112212222222233443321 2
Q ss_pred eEEEEEeCC
Q 047559 292 KLLLVLDDV 300 (444)
Q Consensus 292 r~LlVlDdv 300 (444)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999997
No 392
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.82 E-value=0.083 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..++|+|+.|.|||||++.+...
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999764
No 393
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.81 E-value=0.021 Score=51.62 Aligned_cols=66 Identities=23% Similarity=0.203 Sum_probs=39.8
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 192 DKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
+..++++.+.... .+..+|+|.|+||.|||||...+....+.++ +--.++=|.-|.+++--.++-+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERG-KRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcC-CceEEEEECCCCCCCCCccccc
Confidence 4556666665433 3458999999999999999999887765444 4445555666666665555443
No 394
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.81 E-value=0.14 Score=51.78 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=69.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|......++...+..-.. ....+.|.|..|+||+++|+.+...... .....+-++++.- ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~ih~~~~~---~~~~~~~~~c~~~--~~~~~~~~l 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR----SDITVLINGESGTGKELVARALHRHSPR---ANGPFIALNMAAI--PKDLIESEL 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC----cCCeEEEECCCCCCHHHHHHHHHHhCCC---CCCCeEEEeCCCC--CHHHHHHHh
Confidence 477777666777666544221 1246789999999999999999875321 1122233343332 233333332
Q ss_pred HHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEecCCh
Q 047559 265 ESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTTRHA 331 (444)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTr~~ 331 (444)
++.......... .......-....-.|+||++.......+..+...+..+. .+.+||+||...
T Consensus 206 --fg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 --FGHEKGAFTGAN--TRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred --cCCCCCCCCCcc--cCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 111100000000 000000111223458899998876666666665554321 245888888654
No 395
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.80 E-value=0.094 Score=47.89 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+...
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 396
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.80 E-value=0.057 Score=49.69 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=53.6
Q ss_pred eEEEEEecCCChHHHHH-HHHhhccccccCCccee-EEEEeCCCC-CHHHHHHHHHHHhccC-------CCCcccHHH--
Q 047559 212 AVIPIVGMAGVGKTTLA-REVYNDRAVEDSKFDVK-AWVCVSDDF-DVLNISRALLESITFA-------SCDLKALNE-- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~-- 279 (444)
.-+.|+|.+|+|||+|| ..+.+.. +-+.. +++-++... ...++.+.+...-... ..+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 57899999999999995 5565542 23444 667776654 4555666555321110 111111111
Q ss_pred ---HHHHHHHHh--CCceEEEEEeCCCCCChhcHHHhh
Q 047559 280 ---VQVQIKRAV--DGKKLLLVLDDVWNEDYCLWEDLK 312 (444)
Q Consensus 280 ---~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~ 312 (444)
..-.+.+++ +++.+||++||+-.. ...|.++.
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~-A~A~rEis 181 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ-AVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH-HHHHHHHH
Confidence 122344444 688999999999332 12344443
No 397
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.79 E-value=0.061 Score=53.61 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=54.1
Q ss_pred eEEEEEecCCChHHHHH-HHHhhccccc-----cCCcceeEEEEeCCCCCHHHHHHHHHHHhccCC--------CCcccH
Q 047559 212 AVIPIVGMAGVGKTTLA-REVYNDRAVE-----DSKFDVKAWVCVSDDFDVLNISRALLESITFAS--------CDLKAL 277 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~--------~~~~~~ 277 (444)
.-+.|.|-.|+|||+|| ..+.+...+. + +-+.++++-+++......-+...++.-+.-. .+.+..
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~-~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSK-NAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccC-CCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 57899999999999997 6666664221 2 4467888888887644333444444433110 111111
Q ss_pred HH-----HHHHHHHHh--CCceEEEEEeCCCC
Q 047559 278 NE-----VQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 278 ~~-----~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
.. ..-.+.+++ +++.+|||+||+-.
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 122344555 68899999999944
No 398
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.79 E-value=0.0087 Score=50.23 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=22.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
.+|.|.|.+|+||||||+.+.....
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 399
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.79 E-value=0.077 Score=47.08 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=31.3
Q ss_pred HHHHhCCceEEEEEeCCCCC-ChhcHH-HhhcccCCC-CC-CcEEEEecCChHHHh
Q 047559 284 IKRAVDGKKLLLVLDDVWNE-DYCLWE-DLKAPFLAA-AP-NSKIIVTTRHAHVAA 335 (444)
Q Consensus 284 l~~~l~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~-~~-gs~iivTTr~~~va~ 335 (444)
+...+..++-++++|+.-.. +..... .+...+... .. |..||++|.+.....
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 45566677889999998442 333334 344444332 22 567888888776654
No 400
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.79 E-value=0.0076 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...|.|+|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998864
No 401
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.78 E-value=0.074 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|+|+.|.|||||++.+..-.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999997543
No 402
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.78 E-value=0.048 Score=54.05 Aligned_cols=88 Identities=23% Similarity=0.316 Sum_probs=55.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFA-------SCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 278 (444)
.-++|+|.+|+|||||+..+....... +-+.++++-++... .+.+++..+...-... ..+.+...
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~--~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE--HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 578999999999999999887653222 23467777776654 4566666666432111 11221211
Q ss_pred HHHHHHHHHh---CCceEEEEEeCCC
Q 047559 279 EVQVQIKRAV---DGKKLLLVLDDVW 301 (444)
Q Consensus 279 ~~~~~l~~~l---~~kr~LlVlDdv~ 301 (444)
.....+.+++ +++++||++|++-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 1223456666 6789999999993
No 403
>PRK04040 adenylate kinase; Provisional
Probab=95.78 E-value=0.008 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|+|++|+||||+++.+.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998764
No 404
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.78 E-value=0.043 Score=53.95 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=49.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhccC-------CCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD-FDVLNISRALLESITFA-------SCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~il~~l~~~-------~~~~~~~~----- 278 (444)
..++|+|..|.|||||++.+..... .+..+..-++.. -...++....+.+-+.. ..+.+...
T Consensus 138 qri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~ 212 (413)
T TIGR03497 138 QRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAA 212 (413)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 6899999999999999998887532 222333334433 24445555444321111 11111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCC
Q 047559 279 EVQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
.....+.+++ +++++||++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 213 FTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 1223455555 6889999999983
No 405
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.76 E-value=0.063 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 59999999999999999999864
No 406
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.75 E-value=0.037 Score=48.01 Aligned_cols=118 Identities=19% Similarity=0.056 Sum_probs=62.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC---CCCHHHHHHHHH--HHh--ccC-----CCCcc---c
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD---DFDVLNISRALL--ESI--TFA-----SCDLK---A 276 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~il--~~l--~~~-----~~~~~---~ 276 (444)
..|.|+|..|-||||.|.-+.-+.--. -+ .+..+..-. .......+..+- .-. +.. ..... .
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~--G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGH--GK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHC--CC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 589999999999999997766543211 11 222222221 223333333210 000 000 00011 1
Q ss_pred HHHHHHHHHHHhCCce-EEEEEeCCCCC---ChhcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 277 LNEVQVQIKRAVDGKK-LLLVLDDVWNE---DYCLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 277 ~~~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
........++.+.... =|+|||++-.. .....+++...+.....+.-||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222334455554444 49999998331 22345667777766677889999999753
No 407
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.75 E-value=0.066 Score=46.91 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=27.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCc-------ceeEEEEeCCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKF-------DVKAWVCVSDD 253 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~vs~~ 253 (444)
.++.|.|++|+|||+++..+..........| ..++|++...+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5899999999999999988876653322111 35677776654
No 408
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.74 E-value=0.061 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999754
No 409
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.74 E-value=0.039 Score=50.70 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhcccCcHHHHHHHHHHHHHhhhhhhhHHHHH
Q 047559 37 VASELKKWEDCLMMIQAVLRDA-EEKQLTDEAVKLWLDDLRDLAYDAEDILDEFA 90 (444)
Q Consensus 37 v~~~~~~L~~~l~~i~~~l~~a-~~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~ 90 (444)
++..++-++.+|+.+|.||++. ++.+..-.....++.++-..||++|.++|-+.
T Consensus 319 lKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 319 LKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 5788999999999999999997 44344434489999999999999999999875
No 410
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.063 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-.+++++|+.|+||||++..+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999999988764
No 411
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.0084 Score=51.86 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
+.|.+.|.+|+||||+|+++....+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4678899999999999999987643
No 412
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.73 E-value=0.066 Score=52.96 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=50.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFA-------SCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 278 (444)
..++|+|..|+|||||++.+.... ..+..+...+.... +..++...+...-... ..+.....
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 579999999999999999987642 33444444444432 4445554444332111 11111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCCC
Q 047559 279 EVQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
.....+.+++ +++++||++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 1223355665 68899999999943
No 413
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.72 E-value=0.045 Score=54.26 Aligned_cols=87 Identities=21% Similarity=0.171 Sum_probs=49.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHh------c-cCCCCcccH-----HH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESI------T-FASCDLKAL-----NE 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l------~-~~~~~~~~~-----~~ 279 (444)
..++|+|..|+|||||++.+...... -...+++..-+.-+..++....+..- . ....+.+.. ..
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~~~~----~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~ 234 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARNTSA----DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAY 234 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCC----CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHH
Confidence 68999999999999999988875321 12344443333334555444322211 0 011111111 11
Q ss_pred HHHHHHHHh--CCceEEEEEeCCCC
Q 047559 280 VQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 280 ~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
....+.+++ +++++||++||+-.
T Consensus 235 ~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 235 TATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHCCCcEEEEEeChHH
Confidence 223355565 68899999999843
No 414
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.72 E-value=0.088 Score=51.20 Aligned_cols=83 Identities=22% Similarity=0.236 Sum_probs=48.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHHH
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQIK 285 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 285 (444)
-.++.|.|.+|+|||||+.++...... ....++|++.... ..++. .-.+.++.... ...+.+.+...+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 379999999999999999998865422 2245677765432 33332 22333432211 1223344333332
Q ss_pred HHhCCceEEEEEeCCCC
Q 047559 286 RAVDGKKLLLVLDDVWN 302 (444)
Q Consensus 286 ~~l~~kr~LlVlDdv~~ 302 (444)
..+.-+||+|.+..
T Consensus 156 ---~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ---ELKPDLVIIDSIQT 169 (372)
T ss_pred ---hcCCcEEEEcchHH
Confidence 34567899999843
No 415
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.013 Score=50.11 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=22.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++.|.|++|+|||||++.++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999999863
No 416
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.71 E-value=0.11 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++++.|+.|.|||||.+.+....
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 699999999999999999998653
No 417
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.71 E-value=0.11 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|.|||||++.+....
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 418
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.71 E-value=0.0085 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999987753
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.68 E-value=0.068 Score=49.43 Aligned_cols=89 Identities=12% Similarity=0.182 Sum_probs=45.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhC-
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFASCDLKALNEVQVQIKRAVD- 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~- 289 (444)
.+++++|.+|+||||++..+....... -..+.+++..... ...+-+......++.......+...+...+...-.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 689999999999999999887653211 1234455443221 11222222222222221112333444443433222
Q ss_pred CceEEEEEeCCCCC
Q 047559 290 GKKLLLVLDDVWNE 303 (444)
Q Consensus 290 ~kr~LlVlDdv~~~ 303 (444)
.+.=++++|..-..
T Consensus 153 ~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 153 ARVDYILIDTAGKN 166 (270)
T ss_pred CCCCEEEEECCCCC
Confidence 23457888988443
No 420
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.68 E-value=0.019 Score=46.00 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=33.0
Q ss_pred cccccchhHHHHHHHHhcCC-CCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 185 AVFGRQQDKAKMLEMVLTDT-SSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.++|..-..+.+++.+..-- ...+.+.-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46666655555544443310 112266789999999999999988888765
No 421
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.65 E-value=0.14 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..++|+|+.|.|||||++.+..-
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998754
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.64 E-value=0.0039 Score=54.47 Aligned_cols=21 Identities=38% Similarity=0.325 Sum_probs=18.5
Q ss_pred EEEEEecCCChHHHHHHHHhh
Q 047559 213 VIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (444)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999873
No 423
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.64 E-value=0.052 Score=53.47 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=64.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC-------CCCccc-----HHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA-------SCDLKA-----LNE 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~-------~~~~~~-----~~~ 279 (444)
..++|+|..|.|||||++.+...... ...++...-.+.....+++...+..-+.. ..+.+. ...
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 58899999999999999999876421 12333332233456667766655542211 111111 112
Q ss_pred HHHHHHHHh--CCceEEEEEeCCCCCChhcHHHhhccc--CCCCCCcEEEEecCChHHHhh
Q 047559 280 VQVQIKRAV--DGKKLLLVLDDVWNEDYCLWEDLKAPF--LAAAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 280 ~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l--~~~~~gs~iivTTr~~~va~~ 336 (444)
....+.+++ +++++||++||+-..- ....++...+ ++. .|-...+.|....+...
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a-~A~reisl~~~e~p~-~G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFA-DARRSVDIAVKELPI-GGKTLLMESYMKKLLER 291 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHH-HHHHHHHHHhcCCCC-CCeeeeeeccchhHHHH
Confidence 223455555 5789999999994421 1223332222 121 25555555555555443
No 424
>PHA00729 NTP-binding motif containing protein
Probab=95.64 E-value=0.016 Score=51.66 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=21.8
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...|.|.|.+|+||||||..+.+..
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998763
No 425
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.64 E-value=0.078 Score=50.39 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=53.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHh----ccC----------CCCccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESI----TFA----------SCDLKA 276 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l----~~~----------~~~~~~ 276 (444)
..++|.|..|+|||+|++++.+.. +-+.++++-++... .+.+++.++-+.. +.. ..+...
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~ 232 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPV 232 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCH
Confidence 589999999999999999998863 44678888887654 4555665543211 100 011111
Q ss_pred -HH----HHHHHHHHHh--CCceEEEEEeCC
Q 047559 277 -LN----EVQVQIKRAV--DGKKLLLVLDDV 300 (444)
Q Consensus 277 -~~----~~~~~l~~~l--~~kr~LlVlDdv 300 (444)
.. -..-.+.+++ .++.+|+++|++
T Consensus 233 ~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~ 263 (369)
T cd01134 233 AAREASIYTGITIAEYFRDMGYNVALMADST 263 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 11 1122345555 578999999998
No 426
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.64 E-value=0.12 Score=54.01 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..++|+|..|.|||||++.+..-
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998754
No 427
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.64 E-value=0.14 Score=46.99 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||++.+...
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999764
No 428
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.63 E-value=0.04 Score=51.01 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=19.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..|.|.|.+|+||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 3689999999999999999987643
No 429
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.63 E-value=0.0089 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
No 430
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.0087 Score=52.15 Aligned_cols=26 Identities=42% Similarity=0.558 Sum_probs=23.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36999999999999999999998754
No 431
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.63 E-value=0.018 Score=52.02 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=51.8
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC---------------CCC-
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA---------------SCD- 273 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~---------------~~~- 273 (444)
.-.++.|.|.+|+|||+|+.++....... .-..++|++...+ ..++.+.+- .++.. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 34799999999999999999876543222 0246678876554 344444332 22210 001
Q ss_pred ----cccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 047559 274 ----LKALNEVQVQIKRAVDG-KKLLLVLDDVW 301 (444)
Q Consensus 274 ----~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 301 (444)
..+...+...+.+.++. +...+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 24566677777776643 34789999873
No 432
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.63 E-value=0.015 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999973
No 433
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.62 E-value=0.099 Score=48.44 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|.|||||++.+....
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999998763
No 434
>PRK04328 hypothetical protein; Provisional
Probab=95.62 E-value=0.07 Score=49.00 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=30.2
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD 253 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 253 (444)
.-.++.|.|.+|+|||+|+.++.... .+ .-...+|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~~--~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-LQ--MGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh--cCCcEEEEEeeCC
Confidence 34799999999999999999876552 11 3346678876553
No 435
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.62 E-value=0.02 Score=46.70 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
.+|.+.|.-|.|||||++.+.....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 436
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.62 E-value=0.008 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 437
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.62 E-value=0.0078 Score=53.20 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+|+|.|++|+|||||++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 438
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.60 E-value=0.12 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|+|..|.|||||++.+..-.
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987543
No 439
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.58 E-value=0.021 Score=48.17 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 191 QDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+++|.+.|.. ++++++|..|+|||||.+.+....
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 457788888732 699999999999999999998764
No 440
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.58 E-value=0.0096 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.7
Q ss_pred ceEEEEEecCCChHHHHHHHHh
Q 047559 211 LAVIPIVGMAGVGKTTLAREVY 232 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~ 232 (444)
.+++.|.|+.|.||||+.+.+.
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHH
Confidence 3799999999999999998865
No 441
>PRK02496 adk adenylate kinase; Provisional
Probab=95.57 E-value=0.044 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+.|+|++|+||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 442
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.57 E-value=0.034 Score=54.92 Aligned_cols=89 Identities=17% Similarity=0.291 Sum_probs=56.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCcccHH-----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFA-------SCDLKALN----- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 278 (444)
.-++|.|.+|+|||+|+..+..... +. +-+.++++-++... ...+++..+...-... ..+.+...
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 5789999999999999999876632 22 45788888887654 4556666655431111 11111111
Q ss_pred HHHHHHHHHh---CCceEEEEEeCCCC
Q 047559 279 EVQVQIKRAV---DGKKLLLVLDDVWN 302 (444)
Q Consensus 279 ~~~~~l~~~l---~~kr~LlVlDdv~~ 302 (444)
...-.+.+++ +++++||++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1223456666 46899999999943
No 443
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.57 E-value=0.02 Score=47.44 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=28.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD 252 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 252 (444)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~--g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR--GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc--CCceEEEEEccC
Confidence 479999999999999999999886433 455555666555
No 444
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.56 E-value=0.0099 Score=51.57 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999999875
No 445
>PRK06820 type III secretion system ATPase; Validated
Probab=95.55 E-value=0.055 Score=53.44 Aligned_cols=86 Identities=29% Similarity=0.331 Sum_probs=48.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhcc-------CCCCcccHHH----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITF-------ASCDLKALNE---- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~---- 279 (444)
..++|+|.+|+|||||++.+.... +.+..+..-++... ...++....+..-.. ...+.+....
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~~-----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~ 238 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCADS-----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGL 238 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhccC-----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHH
Confidence 578999999999999999888653 34455555555542 222332222211000 0111111111
Q ss_pred -HHHHHHHHh--CCceEEEEEeCCCC
Q 047559 280 -VQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 280 -~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
....+.+++ +++++||++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 239 STATTIAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchhH
Confidence 222355555 68899999999943
No 446
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.54 E-value=0.087 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||++.+..-
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999754
No 447
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.12 Score=54.48 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
-.++.++|+.|+||||++.++....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3799999999999999998888654
No 448
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.058 Score=51.31 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
=+-|.++|++|.|||-||+.|+....
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 36789999999999999999998754
No 449
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.53 E-value=0.045 Score=57.68 Aligned_cols=131 Identities=16% Similarity=0.064 Sum_probs=70.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|....+.++.+.+..-... -..|.|+|..|+||+++|+.+++...... ...+.|+++.-. ...+...++
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~~----~~pvli~Ge~GtGK~~~A~~ih~~s~r~~---~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAKS----SFPVLLCGEEGVGKALLAQAIHNESERAA---GPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhCc----CCCEEEECCCCcCHHHHHHHHHHhCCccC---CCeEEEECCCCC-hHHHHHHhc
Confidence 4788888888877766543321 13588999999999999999987632111 122344444422 122222222
Q ss_pred HHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEecCCh
Q 047559 265 ESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTTRHA 331 (444)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTr~~ 331 (444)
.......... ....+-....=.|+||++..........|...+.... ...+||.||...
T Consensus 398 g~~~~~~~~~--------~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 398 GSDRTDSENG--------RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred CCCCcCccCC--------CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 1110000000 0000001223468999998876666666766654321 134677776643
No 450
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.52 E-value=0.078 Score=46.58 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=22.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAV 237 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 237 (444)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999876543
No 451
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.52 E-value=0.013 Score=50.63 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.5
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+|.|+|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3699999999999999999998765
No 452
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.51 E-value=0.13 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 69999999999999999999764
No 453
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.51 E-value=0.014 Score=46.83 Aligned_cols=21 Identities=43% Similarity=0.706 Sum_probs=16.5
Q ss_pred EEEEecCCChHHHHHHHHhhc
Q 047559 214 IPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (444)
|.|+|.+|+|||++|+.+...
T Consensus 2 vLleg~PG~GKT~la~~lA~~ 22 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS 22 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH
T ss_pred EeeECCCccHHHHHHHHHHHH
Confidence 679999999999999999876
No 454
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.51 E-value=0.11 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 455
>PHA02774 E1; Provisional
Probab=95.50 E-value=0.053 Score=54.84 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEe
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCV 250 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 250 (444)
+..+..+|... ++-..+.|+|++|.|||.+|-.+.+-.. -....|++.
T Consensus 421 l~~lk~~l~~~-----PKknciv~~GPP~TGKS~fa~sL~~~L~-----G~vi~fvN~ 468 (613)
T PHA02774 421 LTALKDFLKGI-----PKKNCLVIYGPPDTGKSMFCMSLIKFLK-----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEEEC
Confidence 44455555322 4446899999999999999999887531 224456654
No 456
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.50 E-value=0.0089 Score=49.81 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 457
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.49 E-value=0.35 Score=45.87 Aligned_cols=49 Identities=24% Similarity=0.182 Sum_probs=32.3
Q ss_pred cccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHH
Q 047559 342 QYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAA 391 (444)
Q Consensus 342 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 391 (444)
++++.+++.+|+..++....-.+-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877633211 111223334466777779998654
No 458
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.49 E-value=0.13 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|..|.|||||.+.+..-.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhc
Confidence 589999999999999999998653
No 459
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.48 E-value=0.086 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCC
Confidence 58999999999999999999754
No 460
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.091 Score=50.96 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCC
Confidence 58999999999999999999864
No 461
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.45 E-value=0.21 Score=44.87 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=57.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc-ccccCCcc----------eeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR-AVEDSKFD----------VKAWVCVSDDFDVLNISRALLESITFASCDLKALNEV 280 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~~f~----------~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 280 (444)
.++.|.|+.|.||||+.+.+.... ....+.|- ..++..+....++.+ +.+....-
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~--------------~~StF~~e 97 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQH--------------GMSTFMVE 97 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCcccccc--------------ccchHHHH
Confidence 688999999999999999887521 11000110 112222222111110 11111111
Q ss_pred HHHHHHHh--CCceEEEEEeCCCCCCh----hc-HHHhhcccCCCCCCcEEEEecCChHHHhhc
Q 047559 281 QVQIKRAV--DGKKLLLVLDDVWNEDY----CL-WEDLKAPFLAAAPNSKIIVTTRHAHVAATM 337 (444)
Q Consensus 281 ~~~l~~~l--~~kr~LlVlDdv~~~~~----~~-~~~l~~~l~~~~~gs~iivTTr~~~va~~~ 337 (444)
...+...+ .+++-|++||++-.... .. -..+...+... .++.+|++|....++...
T Consensus 98 ~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 98 LSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 22233333 35789999999743211 11 11223333332 578899999998887644
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.44 E-value=0.11 Score=52.10 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
.|++++|+.|+||||++.+++....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHH
Confidence 7999999999999999999987643
No 463
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.44 E-value=0.0099 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998763
No 464
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.44 E-value=0.074 Score=52.46 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=48.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC-HHHHHHHHHHH-hcc------CCCCcccHH----H
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD-VLNISRALLES-ITF------ASCDLKALN----E 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~il~~-l~~------~~~~~~~~~----~ 279 (444)
..++|+|..|+|||||++.+.... ..+..+..-++.... ..++....+.. +.. ...+..-.. .
T Consensus 158 q~~~i~G~sG~GKStLl~~i~~~~-----~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~~ 232 (434)
T PRK08472 158 QKLGIFAGSGVGKSTLMGMIVKGC-----LAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAF 232 (434)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc-----CCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHHH
Confidence 589999999999999999998653 233444444544432 23333332221 000 001111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEeCCCC
Q 047559 280 VQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 280 ~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
....+.+++ +++++||++||+-.
T Consensus 233 ~a~~iAEyFrd~G~~Vll~~DslTr 257 (434)
T PRK08472 233 CAMSVAEYFKNQGLDVLFIMDSVTR 257 (434)
T ss_pred HHHHHHHHHHHcCCCEEEecccchH
Confidence 123355555 68899999999943
No 465
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.081 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999754
No 466
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.36 Score=49.68 Aligned_cols=180 Identities=15% Similarity=0.121 Sum_probs=93.4
Q ss_pred cccccchhHHHHHHHHhcCCCC-------CCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSS-------DHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
++-|..+.++-+.+.+.-+..- .-....-|.++|++|.|||-||..+...... -+++|-.+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~--------~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL--------RFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe--------eEEEecCH----
Confidence 4556666666666655433211 0122356899999999999999999876422 14555443
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh-----------cHHHhhcccCC--CCCCcEE
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYC-----------LWEDLKAPFLA--AAPNSKI 324 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~--~~~gs~i 324 (444)
+++...+ +. +.+.......+.-.-++++++||++++..+. -.+++...+.. +-.|.-|
T Consensus 736 ElL~KyI---Ga------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 ELLSKYI---GA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred HHHHHHh---cc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 2222221 21 1222223333344678999999999774221 23444444432 3456666
Q ss_pred EE-ecCChHHHh-hcCCC---CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHH
Q 047559 325 IV-TTRHAHVAA-TMEPI---QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLA 390 (444)
Q Consensus 325 iv-TTr~~~va~-~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 390 (444)
+- |||.+-+-. .+.+. +.+.-..-++.+-.++|....- ......+-++ +.++.+.+|..-|
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~-s~~~~~~vdl----~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN-SLLKDTDVDL----ECLAQKTDGFTGA 872 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh-ccCCccccch----HHHhhhcCCCchh
Confidence 65 455433221 22322 2233344456666777765431 1122223333 4477777776544
No 467
>PRK13409 putative ATPase RIL; Provisional
Probab=95.43 E-value=0.087 Score=54.71 Aligned_cols=124 Identities=17% Similarity=0.152 Sum_probs=62.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCC--cceeEEEEeCCC------CCHHHHHH-------------HHHHHhccC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSK--FDVKAWVCVSDD------FDVLNISR-------------ALLESITFA 270 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~~~~wv~vs~~------~~~~~~~~-------------~il~~l~~~ 270 (444)
.+++|+|+.|+|||||++.+........+. ++..+. .+.+. .++.+.+. .++..++..
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~-y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEE-EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 589999999999999999998653211111 111110 11221 12222222 222222211
Q ss_pred C-----CCccc-HHHHHHHHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCC--CCCCcEEEEecCChHHHhh
Q 047559 271 S-----CDLKA-LNEVQVQIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLA--AAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 271 ~-----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~iivTTr~~~va~~ 336 (444)
. ...-+ -+...-.|...|..++=+++||+--. .|...-..+...+.. ...|..||++|.+...+..
T Consensus 445 ~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~ 519 (590)
T PRK13409 445 RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519 (590)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 0 01111 12222345666667788999999743 233333333333332 1235678888888766554
No 468
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.43 E-value=0.18 Score=49.66 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+|.++|+.|+||||++..++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999888754
No 469
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.42 E-value=0.15 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|+|..|.|||||++.+..-.
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999987653
No 470
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.41 E-value=0.12 Score=47.73 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD 252 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 252 (444)
+.-+++.|.|.+|+|||+|+.++...... .-..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecC
Confidence 34479999999999999999997654321 223567777754
No 471
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.011 Score=49.70 Aligned_cols=20 Identities=45% Similarity=0.723 Sum_probs=18.7
Q ss_pred EEEEEecCCChHHHHHHHHh
Q 047559 213 VIPIVGMAGVGKTTLAREVY 232 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~ 232 (444)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 472
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.40 E-value=0.11 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 473
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.40 E-value=0.12 Score=48.02 Aligned_cols=26 Identities=42% Similarity=0.521 Sum_probs=22.2
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+.+++.++|++|+||||++..+....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34799999999999999998887654
No 474
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.37 E-value=0.086 Score=55.68 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=55.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHH
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQ 283 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~ 283 (444)
+.-+++-|.|++|+|||||+.+++..... .-..++|++....++.. .++.++.... ...+.+.....
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~---~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~ 129 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQA---AGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEI 129 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHH
Confidence 34489999999999999999886654321 23467899877776642 4455544321 22334445555
Q ss_pred HHHHhC-CceEEEEEeCCC
Q 047559 284 IKRAVD-GKKLLLVLDDVW 301 (444)
Q Consensus 284 l~~~l~-~kr~LlVlDdv~ 301 (444)
+...+. ++--|||+|.+-
T Consensus 130 i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 130 ADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHhhcCCCeEEEEcchh
Confidence 666554 456689999985
No 475
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.37 E-value=0.089 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..++|+|..|.|||||++.+..-
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 57999999999999999999754
No 476
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.36 E-value=0.1 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.++.-
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999854
No 477
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.36 E-value=0.047 Score=55.61 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=36.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.++|....+.++.+.+..-... -..|.|.|..|+||+++|+.+++.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~s----~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYARS----SAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCCCHHHHHHHHHHh
Confidence 4899988888888776542221 157999999999999999999876
No 478
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.36 E-value=0.014 Score=46.60 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEEecCCChHHHHHHHHhhccc
Q 047559 214 IPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987643
No 479
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.098 Score=48.96 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|..|.|||||.+.+...
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999855
No 480
>PF13479 AAA_24: AAA domain
Probab=95.35 E-value=0.052 Score=48.58 Aligned_cols=20 Identities=50% Similarity=0.581 Sum_probs=18.0
Q ss_pred eEEEEEecCCChHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREV 231 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v 231 (444)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46899999999999999876
No 481
>PRK14528 adenylate kinase; Provisional
Probab=95.35 E-value=0.03 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999997654
No 482
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.34 E-value=0.012 Score=51.16 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 483
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.34 E-value=0.14 Score=54.68 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..++|+|..|+|||||++.+..-
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998654
No 484
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.32 E-value=0.07 Score=45.80 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.++.|.|.+|+||||+|..+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 36899999999999999998765
No 485
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.32 E-value=0.057 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEecCCChHHHHHHHHhhccc
Q 047559 214 IPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
+.+.|++|.||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999987653
No 486
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.32 E-value=0.017 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
++..+|.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344799999999999999999998753
No 487
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.31 E-value=0.018 Score=51.57 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHh
Q 047559 212 AVIPIVGMAGVGKTTLAREVY 232 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~ 232 (444)
.++.|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999985
No 488
>PRK13947 shikimate kinase; Provisional
Probab=95.31 E-value=0.013 Score=50.40 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998864
No 489
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.31 E-value=0.015 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|+|+|++|+|||||++.+....
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998753
No 490
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.31 E-value=0.017 Score=51.39 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...+.+.|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34588999999999999999998754
No 491
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.30 E-value=0.069 Score=52.65 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=47.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhccC-------CCCcc-----cHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD-DFDVLNISRALLESITFA-------SCDLK-----ALN 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~il~~l~~~-------~~~~~-----~~~ 278 (444)
..++|+|..|+|||||++.+.... ..+..+...+.. ..+..++....+..-... ..+.. ...
T Consensus 156 Q~igI~G~sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~ 230 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKAT 230 (434)
T ss_pred eEEEEECCCCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHH
Confidence 689999999999999999887653 223332232322 223333333333322111 11111 112
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCCC
Q 047559 279 EVQVQIKRAV--DGKKLLLVLDDVWN 302 (444)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~~ 302 (444)
.....+.++. +++++||++||+-.
T Consensus 231 e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 231 ELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHhhhccCCEEEeecchhH
Confidence 2333445554 67899999999943
No 492
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.11 Score=45.48 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.8
Q ss_pred CceEEEEEecCCChHHHHHHHHhh
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
+-.|.++.|++|.||||+.+.+-.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHh
Confidence 347999999999999999987754
No 493
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.04 Score=46.64 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.0
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcccc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAV 237 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 237 (444)
+..+|-+.|.+|.||||+|..++.....
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3479999999999999999999887543
No 494
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.29 E-value=0.017 Score=49.44 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.3
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
...+++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 346999999999999999999987653
No 495
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.29 E-value=0.041 Score=50.89 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=55.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC------------------
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA------------------ 270 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~------------------ 270 (444)
+.-+++.|+|.+|+|||+++.++.... .. ....++||+.... ..++.+.+.+ ++-.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~--~~-~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~ 94 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG--AR-EGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLS 94 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH--Hh-cCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccc
Confidence 344899999999999999999988763 23 5678899988764 3344333322 2110
Q ss_pred -CC-------CcccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 047559 271 -SC-------DLKALNEVQVQIKRAVDG-KKLLLVLDDVW 301 (444)
Q Consensus 271 -~~-------~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 301 (444)
.. ...+...+...+.+.... +...+|+|.+-
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 95 EKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred ccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 00 012445566666665532 36778899985
No 496
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.28 E-value=0.14 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..++|+|..|.|||||++.+...
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999998654
No 497
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.27 E-value=0.013 Score=48.40 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.++|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999875
No 498
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.26 E-value=0.46 Score=43.86 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=65.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
+.+.++|+.|+|||+-++.+++.. +..+-+..++.++...+...+......... .........+...+.+.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHccC
Confidence 488999999999999999998752 222334556666666666666665554332 22333444555566888
Q ss_pred eEEEEEeCCCCCChhcHHHhhcccCC
Q 047559 292 KLLLVLDDVWNEDYCLWEDLKAPFLA 317 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~l~~~l~~ 317 (444)
.-+|++|+........++.+......
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHh
Confidence 88999999987766677777665433
No 499
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.26 E-value=0.2 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..++|+|+.|.|||||++.+...
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccC
Confidence 68999999999999999998654
No 500
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.25 E-value=0.16 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999754
Done!