Query 047559
Match_columns 444
No_of_seqs 319 out of 2364
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 21:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.7E-40 1.3E-44 336.6 15.6 240 187-443 131-383 (549)
2 1vt4_I APAF-1 related killer D 100.0 4E-33 1.4E-37 290.4 13.5 225 185-444 129-377 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-32 5.3E-37 306.9 16.1 247 179-444 119-385 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.1E-29 1.4E-33 258.1 17.0 240 183-444 123-385 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 4.9E-17 1.7E-21 128.7 6.1 78 8-93 3-82 (115)
6 2qen_A Walker-type ATPase; unk 99.6 3E-15 1E-19 143.7 16.2 196 182-398 10-249 (350)
7 1w5s_A Origin recognition comp 99.6 3.9E-15 1.3E-19 146.4 15.1 212 183-396 21-267 (412)
8 2fna_A Conserved hypothetical 99.6 1.6E-14 5.4E-19 139.0 16.3 194 182-399 11-254 (357)
9 1njg_A DNA polymerase III subu 99.5 9.3E-13 3.2E-17 119.2 16.6 197 184-398 23-231 (250)
10 2qby_B CDC6 homolog 3, cell di 99.5 1.5E-12 5.2E-17 126.6 18.7 222 184-412 20-269 (384)
11 2v1u_A Cell division control p 99.5 2.4E-12 8.2E-17 125.2 19.5 202 183-390 18-244 (387)
12 1fnn_A CDC6P, cell division co 99.4 5.1E-12 1.7E-16 123.0 18.4 208 184-395 17-247 (389)
13 2chg_A Replication factor C sm 99.4 9.3E-12 3.2E-16 111.0 17.2 187 184-396 17-205 (226)
14 2qby_A CDC6 homolog 1, cell di 99.4 4.5E-12 1.6E-16 123.1 14.0 208 183-394 19-244 (386)
15 1sxj_B Activator 1 37 kDa subu 99.2 9.1E-11 3.1E-15 111.1 14.3 186 184-395 21-210 (323)
16 1iqp_A RFCS; clamp loader, ext 99.1 9.7E-10 3.3E-14 104.1 13.0 189 184-398 25-215 (327)
17 3te6_A Regulatory protein SIR3 99.0 4.6E-09 1.6E-13 98.1 13.5 207 185-396 21-281 (318)
18 1jr3_A DNA polymerase III subu 99.0 6.9E-09 2.4E-13 100.2 15.1 195 185-396 17-222 (373)
19 2chq_A Replication factor C sm 98.9 9.4E-09 3.2E-13 96.9 13.5 183 184-396 17-205 (319)
20 1hqc_A RUVB; extended AAA-ATPa 98.8 8.7E-09 3E-13 97.5 9.6 182 184-398 12-214 (324)
21 1jbk_A CLPB protein; beta barr 98.7 3.3E-08 1.1E-12 85.4 9.7 152 184-357 22-194 (195)
22 1sxj_D Activator 1 41 kDa subu 98.7 1.1E-07 3.9E-12 90.8 13.6 195 184-395 37-235 (353)
23 3bos_A Putative DNA replicatio 98.7 3E-08 1E-12 89.2 8.0 174 185-396 29-218 (242)
24 3uk6_A RUVB-like 2; hexameric 98.7 2E-07 7E-12 89.7 13.7 196 184-395 44-303 (368)
25 2z4s_A Chromosomal replication 98.7 3.5E-07 1.2E-11 90.1 15.3 184 211-414 130-333 (440)
26 3pvs_A Replication-associated 98.7 2.2E-07 7.6E-12 91.4 13.5 198 184-413 26-244 (447)
27 3h4m_A Proteasome-activating n 98.6 9.2E-07 3.1E-11 81.8 16.7 185 183-393 16-229 (285)
28 3pfi_A Holliday junction ATP-d 98.6 3E-07 1E-11 87.4 13.2 179 184-396 29-228 (338)
29 3u61_B DNA polymerase accessor 98.6 2.7E-07 9.3E-12 87.2 12.5 179 184-396 26-217 (324)
30 1sxj_E Activator 1 40 kDa subu 98.6 4.7E-07 1.6E-11 86.6 12.9 199 184-396 14-238 (354)
31 1sxj_A Activator 1 95 kDa subu 98.6 5.7E-07 1.9E-11 90.6 13.6 194 184-394 39-252 (516)
32 1d2n_A N-ethylmaleimide-sensit 98.5 1.9E-06 6.4E-11 79.2 15.6 195 185-411 34-259 (272)
33 2qz4_A Paraplegin; AAA+, SPG7, 98.5 1.7E-06 5.9E-11 78.8 15.3 189 184-396 6-223 (262)
34 1a5t_A Delta prime, HOLB; zinc 98.5 2.3E-06 7.8E-11 81.1 16.2 173 190-394 8-204 (334)
35 3syl_A Protein CBBX; photosynt 98.5 6.6E-07 2.3E-11 83.8 11.8 161 185-362 32-218 (309)
36 2p65_A Hypothetical protein PF 98.4 1E-06 3.5E-11 75.6 9.2 46 184-235 22-67 (187)
37 3eie_A Vacuolar protein sortin 98.4 1.1E-05 3.7E-10 76.0 16.9 184 184-395 18-228 (322)
38 2qp9_X Vacuolar protein sortin 98.4 7.8E-06 2.7E-10 78.1 16.0 185 184-395 51-261 (355)
39 1sxj_C Activator 1 40 kDa subu 98.4 3.9E-06 1.3E-10 79.7 13.8 183 185-394 26-211 (340)
40 1l8q_A Chromosomal replication 98.4 8.5E-06 2.9E-10 76.8 15.8 155 211-390 37-203 (324)
41 3b9p_A CG5977-PA, isoform A; A 98.4 3.4E-05 1.1E-09 71.7 19.6 184 184-395 21-233 (297)
42 3d8b_A Fidgetin-like protein 1 98.4 1.9E-05 6.6E-10 75.4 18.0 187 184-396 84-296 (357)
43 3n70_A Transport activator; si 98.3 5.6E-07 1.9E-11 74.3 6.0 115 185-331 2-116 (145)
44 1xwi_A SKD1 protein; VPS4B, AA 98.3 4E-05 1.4E-09 72.1 19.5 187 184-396 12-224 (322)
45 3ec2_A DNA replication protein 98.3 1.6E-06 5.4E-11 74.4 8.0 121 189-330 19-142 (180)
46 2gno_A DNA polymerase III, gam 98.3 5.4E-06 1.8E-10 77.3 11.3 149 188-361 1-152 (305)
47 3vfd_A Spastin; ATPase, microt 98.2 3.4E-05 1.2E-09 74.6 16.2 188 184-396 115-327 (389)
48 1qvr_A CLPB protein; coiled co 98.2 2.9E-06 9.9E-11 90.7 9.0 155 184-360 170-344 (854)
49 2zan_A Vacuolar protein sortin 98.1 6.7E-05 2.3E-09 73.8 17.2 188 184-395 134-345 (444)
50 3pxg_A Negative regulator of g 98.1 9.5E-06 3.2E-10 80.5 11.0 148 184-361 180-338 (468)
51 3cf0_A Transitional endoplasmi 98.1 3.2E-05 1.1E-09 72.0 13.3 181 184-390 15-223 (301)
52 3hu3_A Transitional endoplasmi 98.1 3E-05 1E-09 77.0 12.9 185 184-394 204-414 (489)
53 4b4t_J 26S protease regulatory 98.1 0.00013 4.5E-09 69.8 16.5 179 184-388 148-354 (405)
54 2w58_A DNAI, primosome compone 98.0 5.9E-06 2E-10 72.1 6.6 118 192-330 37-158 (202)
55 1ofh_A ATP-dependent HSL prote 98.0 5E-05 1.7E-09 70.8 13.4 52 184-235 15-74 (310)
56 4fcw_A Chaperone protein CLPB; 98.0 2E-05 6.8E-10 73.7 10.6 135 185-330 18-169 (311)
57 3co5_A Putative two-component 98.0 4.2E-06 1.4E-10 68.8 5.1 109 185-329 5-114 (143)
58 2c9o_A RUVB-like 1; hexameric 98.0 2.9E-05 9.8E-10 76.8 11.9 98 293-395 297-410 (456)
59 2bjv_A PSP operon transcriptio 98.0 1.9E-05 6.5E-10 72.1 8.6 131 185-330 7-150 (265)
60 1r6b_X CLPA protein; AAA+, N-t 98.0 6.2E-05 2.1E-09 79.5 13.7 156 184-361 186-362 (758)
61 4b4t_L 26S protease subunit RP 98.0 0.00022 7.7E-09 69.2 16.2 179 184-388 181-387 (437)
62 3pxi_A Negative regulator of g 97.9 3.6E-05 1.2E-09 81.2 11.0 149 184-361 180-338 (758)
63 4b4t_K 26S protease regulatory 97.9 0.00012 4.1E-09 71.0 13.5 52 184-235 172-230 (428)
64 1ojl_A Transcriptional regulat 97.9 1.9E-05 6.4E-10 73.7 7.6 133 184-331 2-147 (304)
65 4b4t_H 26S protease regulatory 97.9 0.00044 1.5E-08 67.2 16.3 178 185-388 210-415 (467)
66 1in4_A RUVB, holliday junction 97.8 8.6E-05 3E-09 70.2 10.9 195 184-412 25-249 (334)
67 2kjq_A DNAA-related protein; s 97.8 1.2E-05 4.2E-10 66.4 4.1 86 212-330 37-124 (149)
68 3pxi_A Negative regulator of g 97.8 4.9E-05 1.7E-09 80.2 9.0 156 184-361 491-675 (758)
69 1lv7_A FTSH; alpha/beta domain 97.8 0.00051 1.7E-08 62.1 14.5 184 184-393 12-223 (257)
70 2ce7_A Cell division protein F 97.7 0.0003 1E-08 69.3 12.9 179 184-388 16-221 (476)
71 4b4t_M 26S protease regulatory 97.7 0.00021 7.1E-09 69.4 11.4 178 184-388 181-387 (434)
72 4b4t_I 26S protease regulatory 97.7 0.00038 1.3E-08 66.9 12.8 178 184-388 182-388 (437)
73 2r44_A Uncharacterized protein 97.7 9.1E-05 3.1E-09 69.9 8.4 151 185-362 28-199 (331)
74 2r62_A Cell division protease 97.7 4.1E-05 1.4E-09 69.9 5.6 180 184-389 11-219 (268)
75 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00018 6E-09 76.0 9.9 135 184-330 458-607 (758)
76 3m6a_A ATP-dependent protease 97.6 0.0001 3.5E-09 74.4 7.6 162 184-361 81-266 (543)
77 3nbx_X ATPase RAVA; AAA+ ATPas 97.5 0.00086 2.9E-08 66.6 12.6 43 185-235 23-65 (500)
78 3cf2_A TER ATPase, transitiona 97.5 0.0014 4.9E-08 68.4 14.6 180 184-389 204-408 (806)
79 1qvr_A CLPB protein; coiled co 97.4 0.00046 1.6E-08 73.7 10.8 135 185-330 559-710 (854)
80 3t15_A Ribulose bisphosphate c 97.3 0.00034 1.2E-08 64.8 7.1 26 210-235 35-60 (293)
81 2cvh_A DNA repair and recombin 97.3 0.0015 5E-08 57.3 10.3 85 212-303 21-117 (220)
82 2qgz_A Helicase loader, putati 97.3 0.0002 6.9E-09 66.8 4.6 43 191-236 135-177 (308)
83 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00018 6.2E-09 66.6 4.0 69 212-303 124-194 (331)
84 1jr3_D DNA polymerase III, del 97.2 0.0055 1.9E-07 57.8 14.4 156 212-394 19-184 (343)
85 2x8a_A Nuclear valosin-contain 97.2 0.003 1E-07 57.7 11.8 126 214-361 47-191 (274)
86 1um8_A ATP-dependent CLP prote 97.2 0.0021 7.2E-08 61.6 11.2 24 212-235 73-96 (376)
87 1ypw_A Transitional endoplasmi 97.0 0.0047 1.6E-07 65.3 13.0 157 184-361 204-385 (806)
88 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0094 3.2E-07 59.1 14.0 175 184-388 31-236 (499)
89 3lw7_A Adenylate kinase relate 97.0 0.0042 1.4E-07 52.0 9.9 20 212-231 2-21 (179)
90 1g8p_A Magnesium-chelatase 38 97.0 0.0021 7E-08 60.8 8.7 46 184-235 24-69 (350)
91 2b8t_A Thymidine kinase; deoxy 96.9 0.00058 2E-08 60.2 4.0 110 212-330 13-125 (223)
92 3hr8_A Protein RECA; alpha and 96.9 0.0034 1.2E-07 59.3 9.1 84 211-302 61-150 (356)
93 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0025 8.5E-08 56.3 7.8 114 212-331 24-168 (235)
94 3io5_A Recombination and repai 96.8 0.0057 1.9E-07 56.4 9.6 85 213-303 30-123 (333)
95 1v5w_A DMC1, meiotic recombina 96.8 0.012 4E-07 55.6 12.0 92 210-302 121-230 (343)
96 1n0w_A DNA repair protein RAD5 96.7 0.0077 2.6E-07 53.5 10.0 90 212-302 25-130 (243)
97 1xp8_A RECA protein, recombina 96.7 0.0057 1.9E-07 58.2 9.2 83 212-302 75-163 (366)
98 2pze_A Cystic fibrosis transme 96.7 0.029 9.8E-07 49.6 13.1 24 212-235 35-58 (229)
99 2z43_A DNA repair and recombin 96.7 0.0067 2.3E-07 56.8 9.4 90 212-302 108-214 (324)
100 3ice_A Transcription terminati 96.7 0.0024 8.3E-08 60.4 6.2 101 195-301 163-271 (422)
101 1rz3_A Hypothetical protein rb 96.6 0.0022 7.6E-08 55.6 5.5 44 189-235 3-46 (201)
102 1g5t_A COB(I)alamin adenosyltr 96.6 0.0025 8.4E-08 54.6 5.4 116 212-332 29-164 (196)
103 2i1q_A DNA repair and recombin 96.6 0.0091 3.1E-07 55.8 9.8 90 211-301 98-214 (322)
104 2zr9_A Protein RECA, recombina 96.6 0.007 2.4E-07 57.2 8.9 84 212-303 62-151 (349)
105 2cbz_A Multidrug resistance-as 96.5 0.019 6.6E-07 51.0 11.2 24 212-235 32-55 (237)
106 1iy2_A ATP-dependent metallopr 96.4 0.03 1E-06 51.0 12.2 51 184-235 40-97 (278)
107 3sr0_A Adenylate kinase; phosp 96.4 0.0058 2E-07 53.1 6.8 23 213-235 2-24 (206)
108 2orw_A Thymidine kinase; TMTK, 96.4 0.00055 1.9E-08 58.5 0.1 108 212-331 4-113 (184)
109 4g1u_C Hemin import ATP-bindin 96.3 0.02 6.7E-07 51.9 9.9 23 212-234 38-60 (266)
110 2ff7_A Alpha-hemolysin translo 96.3 0.015 5.1E-07 52.1 9.0 23 212-234 36-58 (247)
111 1u94_A RECA protein, recombina 96.3 0.011 3.8E-07 55.9 8.4 83 212-302 64-152 (356)
112 1sky_E F1-ATPase, F1-ATP synth 96.2 0.014 4.7E-07 56.9 9.0 89 212-302 152-256 (473)
113 2px0_A Flagellar biosynthesis 96.2 0.015 5.2E-07 53.6 8.8 26 211-236 105-130 (296)
114 3tqc_A Pantothenate kinase; bi 96.2 0.018 6.2E-07 53.5 9.3 47 186-234 69-115 (321)
115 1pzn_A RAD51, DNA repair and r 96.2 0.024 8.1E-07 53.6 10.0 91 211-302 131-242 (349)
116 1odf_A YGR205W, hypothetical 3 96.1 0.026 8.9E-07 51.8 10.0 27 209-235 29-55 (290)
117 1qhx_A CPT, protein (chloramph 96.1 0.0027 9.3E-08 53.6 3.1 23 212-234 4-26 (178)
118 3kb2_A SPBC2 prophage-derived 96.1 0.0029 1E-07 52.9 2.9 24 212-235 2-25 (173)
119 1zp6_A Hypothetical protein AT 96.1 0.004 1.4E-07 53.2 3.8 23 212-234 10-32 (191)
120 3c8u_A Fructokinase; YP_612366 96.1 0.005 1.7E-07 53.6 4.5 39 193-235 8-46 (208)
121 1gvn_B Zeta; postsegregational 96.0 0.0061 2.1E-07 56.0 5.2 42 192-234 15-56 (287)
122 3tui_C Methionine import ATP-b 96.0 0.023 7.9E-07 53.7 9.1 56 281-336 171-229 (366)
123 3nh6_A ATP-binding cassette SU 96.0 0.016 5.6E-07 53.5 7.9 23 212-234 81-103 (306)
124 2ck3_D ATP synthase subunit be 96.0 0.033 1.1E-06 54.2 10.3 88 212-301 154-263 (482)
125 1ly1_A Polynucleotide kinase; 96.0 0.0039 1.3E-07 52.6 3.4 22 212-233 3-24 (181)
126 2bbs_A Cystic fibrosis transme 96.0 0.088 3E-06 48.2 12.6 24 212-235 65-88 (290)
127 3upu_A ATP-dependent DNA helic 96.0 0.011 3.8E-07 58.2 6.9 25 212-236 46-70 (459)
128 3fvq_A Fe(3+) IONS import ATP- 95.9 0.036 1.2E-06 52.3 10.0 23 212-234 31-53 (359)
129 1kgd_A CASK, peripheral plasma 95.9 0.004 1.4E-07 52.8 3.1 23 212-234 6-28 (180)
130 3vaa_A Shikimate kinase, SK; s 95.9 0.0044 1.5E-07 53.5 3.3 24 212-235 26-49 (199)
131 3lda_A DNA repair protein RAD5 95.9 0.037 1.3E-06 53.2 9.9 90 212-302 179-284 (400)
132 3bh0_A DNAB-like replicative h 95.8 0.033 1.1E-06 51.8 9.4 50 212-266 69-118 (315)
133 3dm5_A SRP54, signal recogniti 95.8 0.094 3.2E-06 50.9 12.7 26 210-235 99-124 (443)
134 3umf_A Adenylate kinase; rossm 95.8 0.0083 2.8E-07 52.5 4.9 27 209-235 27-53 (217)
135 3uie_A Adenylyl-sulfate kinase 95.8 0.0058 2E-07 52.8 3.8 25 212-236 26-50 (200)
136 1ex7_A Guanylate kinase; subst 95.8 0.0035 1.2E-07 53.5 2.3 23 212-234 2-24 (186)
137 1kag_A SKI, shikimate kinase I 95.8 0.0039 1.3E-07 52.3 2.5 23 212-234 5-27 (173)
138 2p5t_B PEZT; postsegregational 95.8 0.008 2.7E-07 54.1 4.7 41 193-234 15-55 (253)
139 3trf_A Shikimate kinase, SK; a 95.8 0.005 1.7E-07 52.3 3.1 24 212-235 6-29 (185)
140 1nks_A Adenylate kinase; therm 95.8 0.0057 1.9E-07 52.2 3.5 24 212-235 2-25 (194)
141 2rhm_A Putative kinase; P-loop 95.7 0.0064 2.2E-07 51.9 3.8 25 211-235 5-29 (193)
142 3l0o_A Transcription terminati 95.7 0.0045 1.5E-07 58.5 2.7 102 194-301 163-272 (427)
143 4a1f_A DNAB helicase, replicat 95.7 0.068 2.3E-06 50.0 10.7 50 212-266 47-96 (338)
144 3hws_A ATP-dependent CLP prote 95.7 0.0091 3.1E-07 56.8 4.8 51 185-235 16-75 (363)
145 3rlf_A Maltose/maltodextrin im 95.7 0.022 7.6E-07 54.1 7.4 23 212-234 30-52 (381)
146 3d31_A Sulfate/molybdate ABC t 95.7 0.04 1.4E-06 51.9 9.1 23 212-234 27-49 (348)
147 1fx0_B ATP synthase beta chain 95.6 0.044 1.5E-06 53.6 9.4 88 212-301 166-276 (498)
148 1z47_A CYSA, putative ABC-tran 95.6 0.034 1.2E-06 52.4 8.5 23 212-234 42-64 (355)
149 1knq_A Gluconate kinase; ALFA/ 95.6 0.0069 2.3E-07 50.9 3.4 24 211-234 8-31 (175)
150 4gp7_A Metallophosphoesterase; 95.6 0.0064 2.2E-07 51.1 3.1 22 212-233 10-31 (171)
151 4eun_A Thermoresistant glucoki 95.6 0.0066 2.3E-07 52.4 3.3 23 212-234 30-52 (200)
152 3tau_A Guanylate kinase, GMP k 95.6 0.0071 2.4E-07 52.6 3.5 24 212-235 9-32 (208)
153 3t61_A Gluconokinase; PSI-biol 95.6 0.0049 1.7E-07 53.3 2.4 24 212-235 19-42 (202)
154 1kht_A Adenylate kinase; phosp 95.6 0.0064 2.2E-07 51.8 3.1 24 212-235 4-27 (192)
155 2it1_A 362AA long hypothetical 95.5 0.039 1.3E-06 52.2 8.6 23 212-234 30-52 (362)
156 2ze6_A Isopentenyl transferase 95.5 0.0068 2.3E-07 54.6 3.2 23 212-234 2-24 (253)
157 2bdt_A BH3686; alpha-beta prot 95.5 0.0076 2.6E-07 51.4 3.4 22 212-233 3-24 (189)
158 3tr0_A Guanylate kinase, GMP k 95.5 0.0076 2.6E-07 52.0 3.4 23 212-234 8-30 (205)
159 1zuh_A Shikimate kinase; alpha 95.5 0.0071 2.4E-07 50.5 3.1 27 209-235 5-31 (168)
160 3asz_A Uridine kinase; cytidin 95.5 0.0088 3E-07 52.0 3.7 24 211-234 6-29 (211)
161 3iij_A Coilin-interacting nucl 95.4 0.0063 2.2E-07 51.5 2.6 24 212-235 12-35 (180)
162 1ye8_A Protein THEP1, hypothet 95.4 0.0078 2.7E-07 51.0 3.1 23 213-235 2-24 (178)
163 3a00_A Guanylate kinase, GMP k 95.4 0.0063 2.1E-07 51.9 2.5 24 212-235 2-25 (186)
164 2j41_A Guanylate kinase; GMP, 95.4 0.0087 3E-07 51.7 3.4 24 212-235 7-30 (207)
165 1via_A Shikimate kinase; struc 95.4 0.0064 2.2E-07 51.2 2.5 23 213-235 6-28 (175)
166 2qor_A Guanylate kinase; phosp 95.4 0.0068 2.3E-07 52.5 2.7 25 211-235 12-36 (204)
167 2jaq_A Deoxyguanosine kinase; 95.4 0.0082 2.8E-07 51.7 3.2 23 213-235 2-24 (205)
168 1ukz_A Uridylate kinase; trans 95.4 0.011 3.6E-07 51.1 3.8 25 210-234 14-38 (203)
169 2c95_A Adenylate kinase 1; tra 95.4 0.0095 3.3E-07 51.0 3.5 23 212-234 10-32 (196)
170 2qt1_A Nicotinamide riboside k 95.4 0.011 3.7E-07 51.3 3.9 24 211-234 21-44 (207)
171 1uf9_A TT1252 protein; P-loop, 95.4 0.011 3.7E-07 50.9 3.8 26 209-234 6-31 (203)
172 1y63_A LMAJ004144AAA protein; 95.3 0.0095 3.3E-07 50.6 3.4 24 211-234 10-33 (184)
173 1tev_A UMP-CMP kinase; ploop, 95.3 0.0096 3.3E-07 50.8 3.4 23 212-234 4-26 (196)
174 1uj2_A Uridine-cytidine kinase 95.3 0.0099 3.4E-07 53.4 3.6 27 209-235 20-46 (252)
175 1lvg_A Guanylate kinase, GMP k 95.3 0.0073 2.5E-07 52.1 2.5 23 212-234 5-27 (198)
176 1vma_A Cell division protein F 95.3 0.081 2.8E-06 48.8 9.7 26 210-235 103-128 (306)
177 2if2_A Dephospho-COA kinase; a 95.3 0.0097 3.3E-07 51.4 3.3 22 212-233 2-23 (204)
178 1cke_A CK, MSSA, protein (cyti 95.3 0.0092 3.2E-07 52.4 3.2 23 212-234 6-28 (227)
179 3cm0_A Adenylate kinase; ATP-b 95.3 0.01 3.5E-07 50.3 3.4 23 212-234 5-27 (186)
180 3llm_A ATP-dependent RNA helic 95.2 0.09 3.1E-06 46.4 9.6 91 212-303 77-188 (235)
181 2plr_A DTMP kinase, probable t 95.2 0.011 3.7E-07 51.3 3.4 24 212-235 5-28 (213)
182 3ney_A 55 kDa erythrocyte memb 95.2 0.01 3.5E-07 51.0 3.1 23 212-234 20-42 (197)
183 2cdn_A Adenylate kinase; phosp 95.2 0.012 4.2E-07 50.7 3.7 24 212-235 21-44 (201)
184 3e1s_A Exodeoxyribonuclease V, 95.2 0.039 1.3E-06 55.8 7.9 103 212-328 205-313 (574)
185 2iyv_A Shikimate kinase, SK; t 95.2 0.0076 2.6E-07 51.1 2.3 24 212-235 3-26 (184)
186 1jjv_A Dephospho-COA kinase; P 95.2 0.011 3.9E-07 51.1 3.4 22 212-233 3-24 (206)
187 2bwj_A Adenylate kinase 5; pho 95.2 0.011 3.6E-07 50.8 3.2 24 212-235 13-36 (199)
188 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.012 4E-07 53.2 3.6 23 212-234 5-27 (260)
189 2yvu_A Probable adenylyl-sulfa 95.2 0.013 4.4E-07 49.8 3.7 26 211-236 13-38 (186)
190 1qf9_A UMP/CMP kinase, protein 95.1 0.012 4.2E-07 50.0 3.5 23 212-234 7-29 (194)
191 1e6c_A Shikimate kinase; phosp 95.1 0.0087 3E-07 50.1 2.5 24 212-235 3-26 (173)
192 3b5x_A Lipid A export ATP-bind 95.1 0.1 3.4E-06 53.0 10.7 23 212-234 370-392 (582)
193 3jvv_A Twitching mobility prot 95.1 0.012 4E-07 55.8 3.5 112 212-335 124-235 (356)
194 2bbw_A Adenylate kinase 4, AK4 95.1 0.011 3.8E-07 52.8 3.3 23 212-234 28-50 (246)
195 1znw_A Guanylate kinase, GMP k 95.1 0.011 3.9E-07 51.2 3.1 23 212-234 21-43 (207)
196 2yhs_A FTSY, cell division pro 95.0 0.079 2.7E-06 52.0 9.2 42 210-255 292-333 (503)
197 2ga8_A Hypothetical 39.9 kDa p 95.0 0.025 8.7E-07 53.0 5.5 46 188-235 3-48 (359)
198 2vli_A Antibiotic resistance p 95.0 0.0077 2.6E-07 50.9 1.8 24 212-235 6-29 (183)
199 2pt5_A Shikimate kinase, SK; a 95.0 0.013 4.4E-07 48.8 3.1 23 213-235 2-24 (168)
200 3aez_A Pantothenate kinase; tr 95.0 0.015 5.1E-07 54.0 3.7 26 210-235 89-114 (312)
201 2q6t_A DNAB replication FORK h 95.0 0.11 3.7E-06 50.8 10.1 51 212-266 201-251 (444)
202 2pbr_A DTMP kinase, thymidylat 94.9 0.014 4.7E-07 49.8 3.2 23 213-235 2-24 (195)
203 1nn5_A Similar to deoxythymidy 94.9 0.015 5.2E-07 50.5 3.5 25 212-236 10-34 (215)
204 3j16_B RLI1P; ribosome recycli 94.9 0.18 6.1E-06 51.2 11.7 23 212-234 104-126 (608)
205 2jeo_A Uridine-cytidine kinase 94.9 0.016 5.6E-07 51.7 3.7 23 212-234 26-48 (245)
206 1htw_A HI0065; nucleotide-bind 94.9 0.016 5.5E-07 47.9 3.4 24 212-235 34-57 (158)
207 1z6g_A Guanylate kinase; struc 94.9 0.011 3.8E-07 51.8 2.5 23 212-234 24-46 (218)
208 1gtv_A TMK, thymidylate kinase 94.9 0.0082 2.8E-07 52.2 1.6 23 213-235 2-24 (214)
209 2wwf_A Thymidilate kinase, put 94.9 0.015 5E-07 50.5 3.2 26 211-236 10-35 (212)
210 1xjc_A MOBB protein homolog; s 94.9 0.015 5.2E-07 48.5 3.1 26 211-236 4-29 (169)
211 3vr4_D V-type sodium ATPase su 94.9 0.047 1.6E-06 52.8 6.9 90 212-301 152-258 (465)
212 3tlx_A Adenylate kinase 2; str 94.8 0.022 7.4E-07 50.9 4.3 25 211-235 29-53 (243)
213 1zd8_A GTP:AMP phosphotransfer 94.8 0.015 5.2E-07 51.2 3.2 23 212-234 8-30 (227)
214 2r9v_A ATP synthase subunit al 94.8 0.12 4E-06 50.7 9.6 85 212-301 176-277 (515)
215 1s96_A Guanylate kinase, GMP k 94.8 0.016 5.4E-07 50.9 3.3 25 211-235 16-40 (219)
216 4akg_A Glutathione S-transfera 94.8 0.16 5.5E-06 60.0 12.4 160 193-384 1256-1452(2695)
217 4e22_A Cytidylate kinase; P-lo 94.8 0.015 5.1E-07 52.2 3.2 23 212-234 28-50 (252)
218 3ozx_A RNAse L inhibitor; ATP 94.8 0.13 4.3E-06 51.6 10.2 23 212-234 26-48 (538)
219 2grj_A Dephospho-COA kinase; T 94.8 0.02 6.8E-07 49.1 3.7 26 209-234 10-35 (192)
220 2r6a_A DNAB helicase, replicat 94.7 0.093 3.2E-06 51.4 9.0 49 212-264 204-252 (454)
221 3e70_C DPA, signal recognition 94.7 0.15 5.1E-06 47.5 10.0 25 211-235 129-153 (328)
222 3r20_A Cytidylate kinase; stru 94.7 0.038 1.3E-06 48.8 5.6 24 212-235 10-33 (233)
223 2v54_A DTMP kinase, thymidylat 94.7 0.016 5.6E-07 49.8 3.2 24 212-235 5-28 (204)
224 3fb4_A Adenylate kinase; psych 94.7 0.015 5.3E-07 50.6 3.0 23 213-235 2-24 (216)
225 1zak_A Adenylate kinase; ATP:A 94.7 0.014 5E-07 51.1 2.8 24 212-235 6-29 (222)
226 2z0h_A DTMP kinase, thymidylat 94.7 0.017 5.8E-07 49.4 3.2 23 213-235 2-24 (197)
227 1tue_A Replication protein E1; 94.7 0.025 8.7E-07 48.6 4.1 38 193-235 45-82 (212)
228 2ffh_A Protein (FFH); SRP54, s 94.7 0.12 4.2E-06 49.9 9.4 24 212-235 99-122 (425)
229 2pez_A Bifunctional 3'-phospho 94.7 0.021 7.1E-07 48.2 3.6 24 212-235 6-29 (179)
230 2qe7_A ATP synthase subunit al 94.7 0.073 2.5E-06 52.1 7.8 85 212-301 163-264 (502)
231 4a74_A DNA repair and recombin 94.7 0.019 6.5E-07 50.4 3.5 45 212-256 26-73 (231)
232 1ixz_A ATP-dependent metallopr 94.6 0.016 5.4E-07 52.0 2.9 22 214-235 52-73 (254)
233 1m7g_A Adenylylsulfate kinase; 94.6 0.021 7.2E-07 49.6 3.6 24 212-235 26-49 (211)
234 1q57_A DNA primase/helicase; d 94.6 0.14 4.8E-06 50.9 10.1 50 212-265 243-292 (503)
235 1aky_A Adenylate kinase; ATP:A 94.6 0.018 6.1E-07 50.4 3.2 24 212-235 5-28 (220)
236 2f1r_A Molybdopterin-guanine d 94.6 0.013 4.4E-07 49.2 2.1 25 212-236 3-27 (171)
237 2hf9_A Probable hydrogenase ni 94.6 0.032 1.1E-06 48.8 4.9 25 210-234 37-61 (226)
238 3cmu_A Protein RECA, recombina 94.6 0.063 2.2E-06 61.3 8.2 84 210-301 1426-1515(2050)
239 3dl0_A Adenylate kinase; phosp 94.6 0.018 6E-07 50.3 3.0 22 213-234 2-23 (216)
240 2onk_A Molybdate/tungstate ABC 94.6 0.019 6.5E-07 51.1 3.2 23 212-234 25-47 (240)
241 1rj9_A FTSY, signal recognitio 94.6 0.02 6.8E-07 53.0 3.4 25 211-235 102-126 (304)
242 3kl4_A SRP54, signal recogniti 94.6 0.11 3.8E-06 50.3 8.8 25 211-235 97-121 (433)
243 2f6r_A COA synthase, bifunctio 94.6 0.024 8E-07 51.9 3.9 23 210-232 74-96 (281)
244 3bk7_A ABC transporter ATP-bin 94.5 0.16 5.6E-06 51.5 10.4 125 212-336 383-537 (607)
245 2ehv_A Hypothetical protein PH 94.5 0.019 6.5E-07 51.1 3.2 22 212-233 31-52 (251)
246 3j16_B RLI1P; ribosome recycli 94.5 0.12 4.2E-06 52.4 9.4 125 212-336 379-533 (608)
247 2ged_A SR-beta, signal recogni 94.5 0.032 1.1E-06 47.4 4.5 26 209-234 46-71 (193)
248 2zts_A Putative uncharacterize 94.5 0.069 2.4E-06 47.3 6.8 48 212-263 31-78 (251)
249 1vht_A Dephospho-COA kinase; s 94.5 0.025 8.4E-07 49.4 3.7 22 212-233 5-26 (218)
250 3tif_A Uncharacterized ABC tra 94.5 0.02 6.7E-07 50.9 3.1 23 212-234 32-54 (235)
251 2pcj_A ABC transporter, lipopr 94.5 0.02 6.9E-07 50.4 3.1 23 212-234 31-53 (224)
252 3gqb_B V-type ATP synthase bet 94.5 0.053 1.8E-06 52.5 6.2 89 212-301 148-261 (464)
253 3gmt_A Adenylate kinase; ssgci 94.4 0.01 3.5E-07 52.2 1.2 24 212-235 9-32 (230)
254 2ck3_A ATP synthase subunit al 94.4 0.14 4.7E-06 50.3 9.1 89 212-301 163-272 (510)
255 2i3b_A HCR-ntpase, human cance 94.4 0.018 6E-07 49.3 2.6 24 212-235 2-25 (189)
256 3mfy_A V-type ATP synthase alp 94.4 0.11 3.7E-06 51.4 8.4 47 212-263 228-275 (588)
257 3dzd_A Transcriptional regulat 94.4 0.077 2.6E-06 50.5 7.3 47 185-235 130-176 (368)
258 1ls1_A Signal recognition part 94.4 0.14 4.7E-06 47.0 8.8 24 212-235 99-122 (295)
259 2c61_A A-type ATP synthase non 94.4 0.055 1.9E-06 52.6 6.2 89 212-300 153-258 (469)
260 3cf2_A TER ATPase, transitiona 94.4 0.052 1.8E-06 56.8 6.3 52 184-235 477-535 (806)
261 2j37_W Signal recognition part 94.3 0.41 1.4E-05 47.3 12.4 26 209-234 99-124 (504)
262 3lnc_A Guanylate kinase, GMP k 94.3 0.015 5E-07 51.4 1.9 23 212-234 28-51 (231)
263 3nwj_A ATSK2; P loop, shikimat 94.3 0.019 6.3E-07 51.5 2.5 24 212-235 49-72 (250)
264 3hjn_A DTMP kinase, thymidylat 94.3 0.1 3.5E-06 44.7 7.1 50 213-265 2-51 (197)
265 3lv8_A DTMP kinase, thymidylat 94.3 0.062 2.1E-06 47.6 5.8 51 212-264 28-78 (236)
266 2xxa_A Signal recognition part 94.3 0.19 6.6E-06 48.7 9.8 26 210-235 99-124 (433)
267 1sq5_A Pantothenate kinase; P- 94.3 0.029 9.8E-07 52.0 3.8 24 211-234 80-103 (308)
268 3b9q_A Chloroplast SRP recepto 94.2 0.027 9.2E-07 52.0 3.6 24 212-235 101-124 (302)
269 3a8t_A Adenylate isopentenyltr 94.2 0.03 1E-06 52.2 3.8 24 212-235 41-64 (339)
270 1np6_A Molybdopterin-guanine d 94.2 0.026 8.7E-07 47.5 3.1 25 211-235 6-30 (174)
271 1g41_A Heat shock protein HSLU 94.2 0.044 1.5E-06 53.2 5.1 52 184-235 15-74 (444)
272 3qf4_A ABC transporter, ATP-bi 94.2 0.2 6.7E-06 50.9 10.2 23 212-234 370-392 (587)
273 3ake_A Cytidylate kinase; CMP 94.2 0.025 8.6E-07 48.7 3.2 22 213-234 4-25 (208)
274 2wsm_A Hydrogenase expression/ 94.2 0.039 1.3E-06 48.0 4.5 25 210-234 29-53 (221)
275 3gfo_A Cobalt import ATP-bindi 94.2 0.024 8.3E-07 51.5 3.0 23 212-234 35-57 (275)
276 1e4v_A Adenylate kinase; trans 94.2 0.027 9.3E-07 49.0 3.3 23 213-235 2-24 (214)
277 3be4_A Adenylate kinase; malar 94.2 0.027 9.3E-07 49.2 3.3 24 212-235 6-29 (217)
278 3k1j_A LON protease, ATP-depen 94.1 0.032 1.1E-06 56.9 4.2 44 184-235 41-84 (604)
279 3d3q_A TRNA delta(2)-isopenten 94.1 0.028 9.4E-07 52.6 3.4 23 212-234 8-30 (340)
280 1b0u_A Histidine permease; ABC 94.1 0.025 8.6E-07 51.1 3.0 23 212-234 33-55 (262)
281 2xb4_A Adenylate kinase; ATP-b 94.1 0.027 9.2E-07 49.5 3.2 22 213-234 2-23 (223)
282 3b60_A Lipid A export ATP-bind 94.1 0.15 5E-06 51.8 9.0 23 212-234 370-392 (582)
283 1ji0_A ABC transporter; ATP bi 94.1 0.027 9.1E-07 50.2 3.1 23 212-234 33-55 (240)
284 3b85_A Phosphate starvation-in 94.1 0.02 6.8E-07 49.8 2.1 23 212-234 23-45 (208)
285 3zvl_A Bifunctional polynucleo 94.1 0.029 9.9E-07 54.4 3.5 27 209-235 256-282 (416)
286 3exa_A TRNA delta(2)-isopenten 94.0 0.032 1.1E-06 51.3 3.6 23 212-234 4-26 (322)
287 2yl4_A ATP-binding cassette SU 94.0 0.1 3.5E-06 53.1 7.8 23 212-234 371-393 (595)
288 1oix_A RAS-related protein RAB 94.0 0.031 1.1E-06 47.6 3.3 25 211-235 29-53 (191)
289 3crm_A TRNA delta(2)-isopenten 94.0 0.028 9.6E-07 52.1 3.2 23 212-234 6-28 (323)
290 1g6h_A High-affinity branched- 94.0 0.027 9.3E-07 50.7 3.1 23 212-234 34-56 (257)
291 1mv5_A LMRA, multidrug resista 94.0 0.03 1E-06 50.0 3.3 23 212-234 29-51 (243)
292 2vp4_A Deoxynucleoside kinase; 94.0 0.031 1.1E-06 49.3 3.4 25 210-234 19-43 (230)
293 1ltq_A Polynucleotide kinase; 94.0 0.03 1E-06 51.5 3.4 23 212-234 3-25 (301)
294 2olj_A Amino acid ABC transpor 94.0 0.028 9.6E-07 50.8 3.0 23 212-234 51-73 (263)
295 2d2e_A SUFC protein; ABC-ATPas 94.0 0.03 1E-06 50.2 3.2 23 212-234 30-52 (250)
296 1sgw_A Putative ABC transporte 94.0 0.024 8.2E-07 49.5 2.5 23 212-234 36-58 (214)
297 1ak2_A Adenylate kinase isoenz 94.0 0.031 1.1E-06 49.4 3.3 24 212-235 17-40 (233)
298 3vr4_A V-type sodium ATPase ca 93.9 0.22 7.4E-06 49.5 9.3 58 195-262 221-279 (600)
299 1vpl_A ABC transporter, ATP-bi 93.9 0.03 1E-06 50.3 3.0 23 212-234 42-64 (256)
300 2zu0_C Probable ATP-dependent 93.8 0.032 1.1E-06 50.6 3.2 23 212-234 47-69 (267)
301 2zej_A Dardarin, leucine-rich 93.8 0.029 1E-06 47.3 2.7 22 213-234 4-25 (184)
302 4tmk_A Protein (thymidylate ki 93.8 0.095 3.2E-06 45.6 6.0 52 212-265 4-55 (213)
303 2ixe_A Antigen peptide transpo 93.8 0.032 1.1E-06 50.7 3.1 23 212-234 46-68 (271)
304 1tf7_A KAIC; homohexamer, hexa 93.8 0.039 1.4E-06 55.2 4.0 24 212-235 282-305 (525)
305 2wji_A Ferrous iron transport 93.8 0.039 1.3E-06 45.6 3.4 23 212-234 4-26 (165)
306 2ghi_A Transport protein; mult 93.8 0.032 1.1E-06 50.3 3.1 23 212-234 47-69 (260)
307 2og2_A Putative signal recogni 93.8 0.037 1.3E-06 52.3 3.6 25 211-235 157-181 (359)
308 2qi9_C Vitamin B12 import ATP- 93.8 0.033 1.1E-06 49.9 3.0 23 212-234 27-49 (249)
309 2dyk_A GTP-binding protein; GT 93.7 0.041 1.4E-06 44.9 3.5 24 212-235 2-25 (161)
310 2j9r_A Thymidine kinase; TK1, 93.7 0.075 2.6E-06 46.0 5.1 108 212-332 29-139 (214)
311 2eyu_A Twitching motility prot 93.7 0.041 1.4E-06 49.6 3.6 111 212-335 26-137 (261)
312 3p32_A Probable GTPase RV1496/ 93.7 0.068 2.3E-06 50.6 5.3 38 193-234 65-102 (355)
313 2nq2_C Hypothetical ABC transp 93.7 0.034 1.2E-06 49.9 3.0 23 212-234 32-54 (253)
314 2yz2_A Putative ABC transporte 93.7 0.034 1.2E-06 50.3 3.1 23 212-234 34-56 (266)
315 3ld9_A DTMP kinase, thymidylat 93.6 0.11 3.7E-06 45.5 6.2 53 211-265 21-74 (223)
316 2ihy_A ABC transporter, ATP-bi 93.6 0.035 1.2E-06 50.6 3.0 23 212-234 48-70 (279)
317 2qmh_A HPR kinase/phosphorylas 93.6 0.038 1.3E-06 47.2 3.0 23 212-234 35-57 (205)
318 3foz_A TRNA delta(2)-isopenten 93.6 0.044 1.5E-06 50.3 3.7 24 211-234 10-33 (316)
319 3fwy_A Light-independent proto 93.6 0.041 1.4E-06 51.0 3.6 26 209-234 46-71 (314)
320 4a82_A Cystic fibrosis transme 93.6 0.12 4.1E-06 52.3 7.3 23 212-234 368-390 (578)
321 2f9l_A RAB11B, member RAS onco 93.6 0.036 1.2E-06 47.5 3.0 23 212-234 6-28 (199)
322 2iw3_A Elongation factor 3A; a 93.6 0.39 1.3E-05 51.3 11.3 120 212-335 462-609 (986)
323 2v9p_A Replication protein E1; 93.6 0.039 1.3E-06 50.9 3.3 23 212-234 127-149 (305)
324 1fx0_A ATP synthase alpha chai 93.6 0.1 3.5E-06 51.1 6.3 84 212-300 164-264 (507)
325 2xau_A PRE-mRNA-splicing facto 93.6 0.52 1.8E-05 49.4 12.2 90 212-302 110-219 (773)
326 2fz4_A DNA repair protein RAD2 93.6 0.31 1.1E-05 43.0 9.1 104 214-329 111-227 (237)
327 2wjg_A FEOB, ferrous iron tran 93.6 0.063 2.2E-06 45.2 4.4 25 210-234 6-30 (188)
328 1nlf_A Regulatory protein REPA 93.5 0.037 1.3E-06 50.4 3.1 23 212-234 31-53 (279)
329 1j8m_F SRP54, signal recogniti 93.5 0.2 6.7E-06 46.0 7.9 25 211-235 98-122 (297)
330 2ce2_X GTPase HRAS; signaling 93.5 0.042 1.5E-06 44.9 3.1 22 213-234 5-26 (166)
331 3cmu_A Protein RECA, recombina 93.5 0.15 5E-06 58.4 8.2 85 211-303 383-473 (2050)
332 3sop_A Neuronal-specific septi 93.4 0.043 1.5E-06 49.8 3.3 22 213-234 4-25 (270)
333 3qf4_B Uncharacterized ABC tra 93.4 0.084 2.9E-06 53.8 5.8 23 212-234 382-404 (598)
334 1xx6_A Thymidine kinase; NESG, 93.4 0.028 9.4E-07 48.1 1.8 108 212-331 9-118 (191)
335 3cmw_A Protein RECA, recombina 93.4 0.14 4.8E-06 57.7 7.8 85 211-303 383-473 (1706)
336 4edh_A DTMP kinase, thymidylat 93.3 0.14 4.9E-06 44.4 6.4 26 212-237 7-32 (213)
337 1z2a_A RAS-related protein RAB 93.3 0.044 1.5E-06 45.0 3.0 23 212-234 6-28 (168)
338 1cr0_A DNA primase/helicase; R 93.3 0.045 1.5E-06 50.3 3.3 24 212-235 36-59 (296)
339 3oaa_A ATP synthase subunit al 93.3 0.3 1E-05 47.7 9.0 85 212-301 163-264 (513)
340 4eaq_A DTMP kinase, thymidylat 93.3 0.056 1.9E-06 47.7 3.7 25 212-236 27-51 (229)
341 1yrb_A ATP(GTP)binding protein 93.2 0.052 1.8E-06 48.7 3.6 27 209-235 12-38 (262)
342 2nzj_A GTP-binding protein REM 93.2 0.046 1.6E-06 45.3 3.0 24 212-235 5-28 (175)
343 2pjz_A Hypothetical protein ST 93.2 0.046 1.6E-06 49.3 3.0 23 212-234 31-53 (263)
344 1q3t_A Cytidylate kinase; nucl 93.2 0.053 1.8E-06 48.0 3.4 26 209-234 14-39 (236)
345 3thx_A DNA mismatch repair pro 93.1 0.18 6.1E-06 53.8 7.8 20 212-231 663-682 (934)
346 2gj8_A MNME, tRNA modification 93.1 0.053 1.8E-06 45.2 3.1 23 212-234 5-27 (172)
347 2ocp_A DGK, deoxyguanosine kin 93.0 0.062 2.1E-06 47.7 3.7 24 212-235 3-26 (241)
348 1zu4_A FTSY; GTPase, signal re 93.0 0.058 2E-06 50.2 3.6 25 211-235 105-129 (320)
349 1svm_A Large T antigen; AAA+ f 93.0 0.054 1.8E-06 51.6 3.4 23 212-234 170-192 (377)
350 1a7j_A Phosphoribulokinase; tr 93.0 0.026 9E-07 51.8 1.2 24 211-234 5-28 (290)
351 3con_A GTPase NRAS; structural 93.0 0.052 1.8E-06 45.9 3.0 24 212-235 22-45 (190)
352 1u8z_A RAS-related protein RAL 93.0 0.054 1.8E-06 44.4 3.0 24 212-235 5-28 (168)
353 1nij_A Hypothetical protein YJ 93.0 0.049 1.7E-06 50.7 3.0 25 210-234 3-27 (318)
354 3q72_A GTP-binding protein RAD 93.0 0.05 1.7E-06 44.7 2.8 22 213-234 4-25 (166)
355 1ny5_A Transcriptional regulat 92.9 0.17 5.9E-06 48.4 6.9 45 186-234 139-183 (387)
356 3kta_A Chromosome segregation 92.9 0.059 2E-06 45.3 3.3 22 212-233 27-48 (182)
357 1u0j_A DNA replication protein 92.9 0.11 3.8E-06 46.6 5.1 36 195-234 92-127 (267)
358 2lkc_A Translation initiation 92.9 0.072 2.5E-06 44.3 3.7 25 210-234 7-31 (178)
359 1m7b_A RND3/RHOE small GTP-bin 92.9 0.058 2E-06 45.4 3.1 24 211-234 7-30 (184)
360 1kao_A RAP2A; GTP-binding prot 92.9 0.057 2E-06 44.2 3.0 24 212-235 4-27 (167)
361 1ek0_A Protein (GTP-binding pr 92.9 0.057 2E-06 44.4 3.0 23 213-235 5-27 (170)
362 1c1y_A RAS-related protein RAP 92.8 0.058 2E-06 44.2 3.0 23 212-234 4-26 (167)
363 2dr3_A UPF0273 protein PH0284; 92.8 0.057 2E-06 47.8 3.2 38 212-252 24-61 (247)
364 1fzq_A ADP-ribosylation factor 92.8 0.071 2.4E-06 44.8 3.6 24 211-234 16-39 (181)
365 1z08_A RAS-related protein RAB 92.8 0.057 2E-06 44.5 3.0 24 211-234 6-29 (170)
366 2erx_A GTP-binding protein DI- 92.8 0.059 2E-06 44.4 3.0 23 212-234 4-26 (172)
367 1svi_A GTP-binding protein YSX 92.8 0.07 2.4E-06 45.2 3.6 24 211-234 23-46 (195)
368 1z0j_A RAB-22, RAS-related pro 92.8 0.058 2E-06 44.4 3.0 24 212-235 7-30 (170)
369 3eph_A TRNA isopentenyltransfe 92.8 0.064 2.2E-06 51.2 3.5 23 212-234 3-25 (409)
370 3q85_A GTP-binding protein REM 92.8 0.059 2E-06 44.4 3.0 22 212-233 3-24 (169)
371 3ihw_A Centg3; RAS, centaurin, 92.7 0.059 2E-06 45.5 3.0 23 212-234 21-43 (184)
372 1g16_A RAS-related protein SEC 92.7 0.064 2.2E-06 44.1 3.1 23 212-234 4-26 (170)
373 1ky3_A GTP-binding protein YPT 92.7 0.062 2.1E-06 44.8 3.0 26 210-235 7-32 (182)
374 3pqc_A Probable GTP-binding pr 92.7 0.081 2.8E-06 44.7 3.7 25 211-235 23-47 (195)
375 2aka_B Dynamin-1; fusion prote 92.6 0.15 5.2E-06 46.6 5.9 42 194-235 9-50 (299)
376 2yv5_A YJEQ protein; hydrolase 92.6 0.092 3.1E-06 48.4 4.3 33 193-235 156-188 (302)
377 1wms_A RAB-9, RAB9, RAS-relate 92.6 0.064 2.2E-06 44.6 3.0 24 211-234 7-30 (177)
378 2cxx_A Probable GTP-binding pr 92.6 0.065 2.2E-06 45.1 3.1 22 213-234 3-24 (190)
379 1nrj_B SR-beta, signal recogni 92.6 0.075 2.6E-06 46.1 3.5 26 210-235 11-36 (218)
380 2fn4_A P23, RAS-related protei 92.6 0.09 3.1E-06 43.7 3.9 25 210-234 8-32 (181)
381 2hxs_A RAB-26, RAS-related pro 92.6 0.069 2.4E-06 44.4 3.1 24 211-234 6-29 (178)
382 1r8s_A ADP-ribosylation factor 92.5 0.062 2.1E-06 44.0 2.8 21 214-234 3-23 (164)
383 3c5c_A RAS-like protein 12; GD 92.5 0.066 2.3E-06 45.3 3.0 24 212-235 22-45 (187)
384 1m2o_B GTP-binding protein SAR 92.5 0.069 2.4E-06 45.3 3.1 23 212-234 24-46 (190)
385 1p5z_B DCK, deoxycytidine kina 92.4 0.05 1.7E-06 49.0 2.2 25 211-235 24-48 (263)
386 1r2q_A RAS-related protein RAB 92.4 0.07 2.4E-06 43.8 3.0 23 212-234 7-29 (170)
387 3tw8_B RAS-related protein RAB 92.4 0.062 2.1E-06 44.7 2.7 27 209-235 7-33 (181)
388 2v3c_C SRP54, signal recogniti 92.4 0.081 2.8E-06 51.4 3.8 26 210-235 98-123 (432)
389 3gqb_A V-type ATP synthase alp 92.4 0.13 4.5E-06 50.8 5.3 46 212-262 222-268 (578)
390 1f6b_A SAR1; gtpases, N-termin 92.4 0.06 2E-06 46.1 2.6 23 212-234 26-48 (198)
391 1p9r_A General secretion pathw 92.4 0.14 4.9E-06 49.3 5.5 23 212-234 168-190 (418)
392 2www_A Methylmalonic aciduria 92.4 0.081 2.8E-06 49.9 3.7 24 211-234 74-97 (349)
393 2bme_A RAB4A, RAS-related prot 92.4 0.074 2.5E-06 44.6 3.1 25 211-235 10-34 (186)
394 3bgw_A DNAB-like replicative h 92.4 0.6 2.1E-05 45.4 9.9 50 212-266 198-247 (444)
395 1upt_A ARL1, ADP-ribosylation 92.4 0.073 2.5E-06 43.8 3.0 23 212-234 8-30 (171)
396 4dsu_A GTPase KRAS, isoform 2B 92.3 0.072 2.5E-06 44.7 3.0 24 212-235 5-28 (189)
397 2y8e_A RAB-protein 6, GH09086P 92.3 0.076 2.6E-06 44.1 3.1 23 212-234 15-37 (179)
398 1lw7_A Transcriptional regulat 92.3 0.076 2.6E-06 50.4 3.4 23 212-234 171-193 (365)
399 1z0f_A RAB14, member RAS oncog 92.3 0.073 2.5E-06 44.2 3.0 25 211-235 15-39 (179)
400 3kkq_A RAS-related protein M-R 92.3 0.074 2.5E-06 44.5 3.0 24 211-234 18-41 (183)
401 3vkw_A Replicase large subunit 92.2 0.29 1E-05 47.3 7.4 25 209-233 159-183 (446)
402 2iwr_A Centaurin gamma 1; ANK 92.2 0.059 2E-06 44.9 2.3 23 212-234 8-30 (178)
403 3f9v_A Minichromosome maintena 92.2 0.05 1.7E-06 55.3 2.1 23 213-235 329-351 (595)
404 1w36_D RECD, exodeoxyribonucle 92.2 0.19 6.6E-06 51.2 6.4 43 212-254 165-207 (608)
405 2yyz_A Sugar ABC transporter, 92.2 0.075 2.6E-06 50.2 3.2 23 212-234 30-52 (359)
406 4f4c_A Multidrug resistance pr 92.2 0.49 1.7E-05 52.8 10.1 24 212-235 445-468 (1321)
407 3v9p_A DTMP kinase, thymidylat 92.2 0.15 5.3E-06 44.7 5.0 25 212-236 26-50 (227)
408 3t5g_A GTP-binding protein RHE 92.2 0.082 2.8E-06 44.2 3.1 24 211-234 6-29 (181)
409 1pui_A ENGB, probable GTP-bind 92.2 0.053 1.8E-06 46.7 2.0 23 212-234 27-49 (210)
410 4gzl_A RAS-related C3 botulinu 92.2 0.099 3.4E-06 44.9 3.7 23 212-234 31-53 (204)
411 3t1o_A Gliding protein MGLA; G 92.1 0.079 2.7E-06 44.8 3.0 24 211-234 14-37 (198)
412 3bc1_A RAS-related protein RAB 92.1 0.079 2.7E-06 44.6 3.0 24 211-234 11-34 (195)
413 1mh1_A RAC1; GTP-binding, GTPa 92.1 0.08 2.7E-06 44.3 3.0 23 212-234 6-28 (186)
414 2axn_A 6-phosphofructo-2-kinas 92.1 0.088 3E-06 52.5 3.7 25 211-235 35-59 (520)
415 2oil_A CATX-8, RAS-related pro 92.1 0.079 2.7E-06 44.8 3.0 25 211-235 25-49 (193)
416 2a9k_A RAS-related protein RAL 92.1 0.082 2.8E-06 44.2 3.0 25 211-235 18-42 (187)
417 2efe_B Small GTP-binding prote 92.1 0.082 2.8E-06 44.1 3.0 25 211-235 12-36 (181)
418 1g29_1 MALK, maltose transport 92.1 0.079 2.7E-06 50.3 3.2 23 212-234 30-52 (372)
419 2qm8_A GTPase/ATPase; G protei 92.0 0.095 3.3E-06 49.1 3.7 24 211-234 55-78 (337)
420 1gwn_A RHO-related GTP-binding 92.0 0.085 2.9E-06 45.5 3.1 23 212-234 29-51 (205)
421 2cjw_A GTP-binding protein GEM 92.0 0.081 2.8E-06 45.0 2.9 22 212-233 7-28 (192)
422 3bwd_D RAC-like GTP-binding pr 92.0 0.084 2.9E-06 44.0 3.0 23 212-234 9-31 (182)
423 2atv_A RERG, RAS-like estrogen 92.0 0.084 2.9E-06 44.9 3.0 23 212-234 29-51 (196)
424 3cmw_A Protein RECA, recombina 92.0 0.28 9.5E-06 55.4 7.8 84 210-301 1430-1519(1706)
425 1v43_A Sugar-binding transport 92.0 0.082 2.8E-06 50.2 3.2 23 212-234 38-60 (372)
426 2bov_A RAla, RAS-related prote 91.9 0.084 2.9E-06 45.1 3.0 26 210-235 13-38 (206)
427 2fg5_A RAB-22B, RAS-related pr 91.9 0.088 3E-06 44.6 3.1 24 212-235 24-47 (192)
428 4dkx_A RAS-related protein RAB 91.9 0.099 3.4E-06 45.6 3.4 22 213-234 15-36 (216)
429 3cbq_A GTP-binding protein REM 91.9 0.067 2.3E-06 45.7 2.3 24 210-233 22-45 (195)
430 2ew1_A RAS-related protein RAB 91.9 0.089 3.1E-06 45.2 3.1 24 211-234 26-49 (201)
431 2g6b_A RAS-related protein RAB 91.9 0.088 3E-06 43.8 3.0 25 211-235 10-34 (180)
432 3llu_A RAS-related GTP-binding 91.9 0.089 3E-06 44.8 3.1 23 212-234 21-43 (196)
433 3oes_A GTPase rhebl1; small GT 91.9 0.091 3.1E-06 44.9 3.1 25 211-235 24-48 (201)
434 1vg8_A RAS-related protein RAB 91.9 0.087 3E-06 45.1 3.0 26 210-235 7-32 (207)
435 3fdi_A Uncharacterized protein 91.9 0.096 3.3E-06 45.1 3.2 24 212-235 7-30 (201)
436 1zj6_A ADP-ribosylation factor 91.8 0.2 7E-06 42.0 5.3 23 212-234 17-39 (187)
437 2h92_A Cytidylate kinase; ross 91.8 0.077 2.6E-06 46.1 2.6 23 212-234 4-26 (219)
438 3dz8_A RAS-related protein RAB 91.8 0.087 3E-06 44.6 2.9 23 212-234 24-46 (191)
439 4bas_A ADP-ribosylation factor 91.8 0.1 3.5E-06 44.3 3.3 27 209-235 15-41 (199)
440 2qu8_A Putative nucleolar GTP- 91.8 0.12 4E-06 45.3 3.8 24 211-234 29-52 (228)
441 1zbd_A Rabphilin-3A; G protein 91.8 0.092 3.2E-06 44.8 3.1 25 211-235 8-32 (203)
442 2ewv_A Twitching motility prot 91.8 0.1 3.5E-06 49.6 3.6 110 212-334 137-247 (372)
443 1zd9_A ADP-ribosylation factor 91.7 0.093 3.2E-06 44.3 3.0 23 212-234 23-45 (188)
444 1ksh_A ARF-like protein 2; sma 91.7 0.092 3.1E-06 44.1 2.9 24 212-235 19-42 (186)
445 2qnr_A Septin-2, protein NEDD5 91.7 0.081 2.8E-06 48.7 2.8 22 213-234 20-41 (301)
446 1u0l_A Probable GTPase ENGC; p 91.7 0.13 4.3E-06 47.4 4.1 34 193-235 160-193 (301)
447 3clv_A RAB5 protein, putative; 91.7 0.093 3.2E-06 44.6 3.0 24 212-235 8-31 (208)
448 2gf9_A RAS-related protein RAB 91.7 0.095 3.2E-06 44.2 3.0 24 212-235 23-46 (189)
449 3reg_A RHO-like small GTPase; 91.7 0.095 3.2E-06 44.4 3.0 24 212-235 24-47 (194)
450 1oxx_K GLCV, glucose, ABC tran 91.7 0.064 2.2E-06 50.6 2.1 22 212-233 32-53 (353)
451 1moz_A ARL1, ADP-ribosylation 91.7 0.068 2.3E-06 44.7 2.0 23 212-234 19-41 (183)
452 3tkl_A RAS-related protein RAB 91.7 0.096 3.3E-06 44.3 3.0 25 211-235 16-40 (196)
453 2b6h_A ADP-ribosylation factor 91.6 0.09 3.1E-06 44.6 2.8 23 212-234 30-52 (192)
454 2fh5_B SR-beta, signal recogni 91.6 0.096 3.3E-06 45.2 3.0 24 212-235 8-31 (214)
455 4hlc_A DTMP kinase, thymidylat 91.6 0.28 9.6E-06 42.3 5.9 24 212-235 3-26 (205)
456 3iev_A GTP-binding protein ERA 91.6 0.11 3.7E-06 48.1 3.5 26 209-234 8-33 (308)
457 2a5j_A RAS-related protein RAB 91.6 0.098 3.3E-06 44.3 3.0 23 212-234 22-44 (191)
458 2h17_A ADP-ribosylation factor 91.6 0.097 3.3E-06 43.8 2.9 23 212-234 22-44 (181)
459 2o52_A RAS-related protein RAB 91.6 0.098 3.4E-06 44.7 3.0 24 211-234 25-48 (200)
460 1ega_A Protein (GTP-binding pr 91.6 0.11 3.8E-06 47.8 3.5 24 211-234 8-31 (301)
461 2gza_A Type IV secretion syste 91.5 0.082 2.8E-06 50.1 2.6 24 212-235 176-199 (361)
462 1z06_A RAS-related protein RAB 91.5 0.1 3.5E-06 44.0 3.0 24 211-234 20-43 (189)
463 1tq4_A IIGP1, interferon-induc 91.5 0.19 6.6E-06 48.3 5.2 22 212-233 70-91 (413)
464 2q3h_A RAS homolog gene family 91.5 0.099 3.4E-06 44.6 2.9 23 212-234 21-43 (201)
465 3gd7_A Fusion complex of cysti 91.5 0.1 3.5E-06 49.8 3.3 22 212-233 48-69 (390)
466 2bcg_Y Protein YP2, GTP-bindin 91.4 0.11 3.7E-06 44.6 3.1 25 211-235 8-32 (206)
467 2p5s_A RAS and EF-hand domain 91.4 0.1 3.5E-06 44.5 3.0 24 211-234 28-51 (199)
468 1x3s_A RAS-related protein RAB 91.4 0.11 3.6E-06 44.0 3.0 24 212-235 16-39 (195)
469 2gf0_A GTP-binding protein DI- 91.4 0.11 3.6E-06 44.2 3.0 23 212-234 9-31 (199)
470 3cr8_A Sulfate adenylyltranfer 91.4 0.091 3.1E-06 52.7 2.9 24 212-235 370-393 (552)
471 3tqf_A HPR(Ser) kinase; transf 91.4 0.14 4.8E-06 42.6 3.5 23 212-234 17-39 (181)
472 2il1_A RAB12; G-protein, GDP, 91.4 0.094 3.2E-06 44.5 2.6 24 212-235 27-50 (192)
473 3ch4_B Pmkase, phosphomevalona 91.4 0.16 5.4E-06 43.5 4.0 25 210-234 10-34 (202)
474 1g8f_A Sulfate adenylyltransfe 91.3 0.14 4.6E-06 50.8 4.0 27 210-236 394-420 (511)
475 3k53_A Ferrous iron transport 91.3 0.14 4.6E-06 46.4 3.8 23 212-234 4-26 (271)
476 2obl_A ESCN; ATPase, hydrolase 91.3 0.11 3.8E-06 48.8 3.3 24 212-235 72-95 (347)
477 2j1l_A RHO-related GTP-binding 91.3 0.11 3.7E-06 45.0 3.0 23 212-234 35-57 (214)
478 3lxx_A GTPase IMAP family memb 91.3 0.13 4.6E-06 45.3 3.7 26 210-235 28-53 (239)
479 2p67_A LAO/AO transport system 91.3 0.13 4.4E-06 48.3 3.7 25 210-234 55-79 (341)
480 2g3y_A GTP-binding protein GEM 91.3 0.11 3.6E-06 45.2 2.9 23 211-233 37-59 (211)
481 3end_A Light-independent proto 91.2 0.13 4.3E-06 47.5 3.6 27 209-235 39-65 (307)
482 2hup_A RAS-related protein RAB 91.2 0.12 4E-06 44.3 3.1 24 211-234 29-52 (201)
483 1bif_A 6-phosphofructo-2-kinas 91.2 0.12 4.1E-06 50.9 3.6 24 212-235 40-63 (469)
484 2fv8_A H6, RHO-related GTP-bin 91.2 0.12 4E-06 44.5 3.1 23 212-234 26-48 (207)
485 2atx_A Small GTP binding prote 91.2 0.12 4E-06 43.8 3.1 23 212-234 19-41 (194)
486 4f4c_A Multidrug resistance pr 91.1 0.72 2.4E-05 51.5 10.0 23 212-234 1106-1128(1321)
487 2h57_A ADP-ribosylation factor 91.1 0.094 3.2E-06 44.3 2.3 24 212-235 22-45 (190)
488 2rcn_A Probable GTPase ENGC; Y 91.1 0.12 4E-06 48.7 3.2 24 212-235 216-239 (358)
489 2j0v_A RAC-like GTP-binding pr 91.1 0.12 4.2E-06 44.4 3.1 24 211-234 9-32 (212)
490 2pt7_A CAG-ALFA; ATPase, prote 91.0 0.09 3.1E-06 49.1 2.3 106 212-333 172-277 (330)
491 2gco_A H9, RHO-related GTP-bin 91.0 0.13 4.3E-06 44.0 3.1 23 212-234 26-48 (201)
492 1f2t_A RAD50 ABC-ATPase; DNA d 90.9 0.15 5.2E-06 41.4 3.4 22 212-233 24-45 (149)
493 1cp2_A CP2, nitrogenase iron p 90.9 0.14 4.8E-06 46.0 3.5 24 212-235 2-25 (269)
494 3cph_A RAS-related protein SEC 90.9 0.13 4.3E-06 44.3 3.0 24 211-234 20-43 (213)
495 1jwy_B Dynamin A GTPase domain 90.9 0.27 9.1E-06 45.4 5.4 27 209-235 22-48 (315)
496 3q3j_B RHO-related GTP-binding 90.9 0.13 4.3E-06 44.6 3.0 23 212-234 28-50 (214)
497 1h65_A Chloroplast outer envel 90.8 0.29 9.8E-06 44.1 5.5 25 211-235 39-63 (270)
498 1m8p_A Sulfate adenylyltransfe 90.8 0.26 8.9E-06 49.7 5.6 27 209-235 394-420 (573)
499 4dhe_A Probable GTP-binding pr 90.8 0.11 3.8E-06 45.1 2.6 25 211-235 29-53 (223)
500 3def_A T7I23.11 protein; chlor 90.7 0.3 1E-05 43.8 5.5 39 193-235 22-60 (262)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.7e-40 Score=336.63 Aligned_cols=240 Identities=17% Similarity=0.236 Sum_probs=195.6
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhh--ccccccCCcceeEEEEeCCCC--CHHHHHHH
Q 047559 187 FGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYN--DRAVEDSKFDVKAWVCVSDDF--DVLNISRA 262 (444)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~ 262 (444)
|||+.++++|.++|..... ...++|+|+||||+||||||+++|+ +.+++. +|++++||++++.+ +...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-NYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-TBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-cCCcEEEEEECCCCCCCHHHHHHH
Confidence 5999999999999976432 4579999999999999999999998 567887 99999999999985 89999999
Q ss_pred HHHHhccCCC-------CcccHHHHHHHHHHHhCCc-eEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHH
Q 047559 263 LLESITFASC-------DLKALNEVQVQIKRAVDGK-KLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVA 334 (444)
Q Consensus 263 il~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va 334 (444)
|+.+++.... +..+...+...+.+.|.++ ||||||||||+.+...|.. .+||+||||||+..++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHH
Confidence 9999976521 1234566788999999996 9999999999864333432 2799999999999999
Q ss_pred hhcCCC-CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHHhcc
Q 047559 335 ATMEPI-QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSKRHDEWDEILNSN 413 (444)
Q Consensus 335 ~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~~ 413 (444)
..++.. .+|+|++|+.++||+||.+++|... ..+.+++++++|+++|+|+||||+++|+.|+.++ .+|...+.+.
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~ 354 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNK 354 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHH
Confidence 877633 5799999999999999999987642 2467888999999999999999999999998774 3343444443
Q ss_pred cCCCCCccChHHHHHHhhcCCchhhhcccC
Q 047559 414 ILDLPQQNGILSVLRLSYHYLPSQLKRCFA 443 (444)
Q Consensus 414 ~~~~~~~~~i~~~l~~sy~~Lp~~lk~cfl 443 (444)
.+..+ ...+..+|.+||++||+++|.||+
T Consensus 355 l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~ 383 (549)
T 2a5y_B 355 LESRG-LVGVECITPYSYKSLAMALQRCVE 383 (549)
T ss_dssp HHHHC-SSTTCCCSSSSSSSHHHHHHHHHH
T ss_pred hhccc-HHHHHHHHhcccccccHHHHHHHh
Confidence 32222 356888999999999999999997
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4e-33 Score=290.41 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=177.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcce-eEEEEeCCCCCHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDV-KAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i 263 (444)
..+||+.++++|.++|... ...++|+|+||||+||||||+++|++.++.. +|+. ++|+++++.++...++..+
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~-~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHH-HHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHH-hCCCcEEEEEeCCCCCHHHHHHHH
Confidence 4599999999999999763 2358999999999999999999999877877 8986 8999999999988888888
Q ss_pred HHHhccCC------CC-----cccHHHHHHHHHHHh---CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecC
Q 047559 264 LESITFAS------CD-----LKALNEVQVQIKRAV---DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTR 329 (444)
Q Consensus 264 l~~l~~~~------~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr 329 (444)
+..+.... .+ ..+.+.+...+.+.| .++|+||||||+|+. ..|+.+ + +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEecc
Confidence 77543211 01 123455666777766 789999999999984 556654 2 6899999999
Q ss_pred ChHHHhhcCCCCcccCC------CCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCC--
Q 047559 330 HAHVAATMEPIQQYNLQ------CLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSK-- 401 (444)
Q Consensus 330 ~~~va~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~-- 401 (444)
+..++..+.....+.++ +|+.+|||+||.+.. +.. .. .+..+ .|+|+||||+++|+.|+.+
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~e---eL~~e---ICgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----PQ---DLPRE---VLTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----TT---THHHH---HCCCCHHHHHHHHHHHHHSCS
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----HH---HHHHH---HhCCCHHHHHHHHHHHhCCCC
Confidence 99988654433456677 999999999999883 321 11 12223 3999999999999999987
Q ss_pred CHHHHHHHHhcccCCCCCccChHHHHHHhhcCCchhh-hcccCC
Q 047559 402 RHDEWDEILNSNILDLPQQNGILSVLRLSYHYLPSQL-KRCFAY 444 (444)
Q Consensus 402 ~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~Lp~~l-k~cflY 444 (444)
+.++|... ....+..+|.+||+.||+++ |.||+|
T Consensus 343 s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~ 377 (1221)
T 1vt4_I 343 TWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDR 377 (1221)
T ss_dssp SHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHH
T ss_pred CHHHHhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77889763 23579999999999999999 999986
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=1.6e-32 Score=306.90 Aligned_cols=247 Identities=19% Similarity=0.302 Sum_probs=188.2
Q ss_pred CCCcCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccc-ccCCcceeEEEEeCCCCC--
Q 047559 179 SVSTERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAV-EDSKFDVKAWVCVSDDFD-- 255 (444)
Q Consensus 179 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~vs~~~~-- 255 (444)
.+..++.|+||+.++++|.++|.... ...++|+|+||||+||||||+++|++.+. ...+|+.++|++++...+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 33455679999999999999997543 45689999999999999999999998654 331346777999998543
Q ss_pred HHHHHHHHHHHhccCCC----CcccHHHHHHHHHHHhCCc--eEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecC
Q 047559 256 VLNISRALLESITFASC----DLKALNEVQVQIKRAVDGK--KLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTR 329 (444)
Q Consensus 256 ~~~~~~~il~~l~~~~~----~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr 329 (444)
....+..++..+..... ...+.+.+...++..+.++ ||||||||+|+. ..|.. ..+||+||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEES
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcC
Confidence 44556677777755332 2456778888999999877 999999999875 33333 257899999999
Q ss_pred ChHHHhh-cCCCCcccCCC-CChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHH
Q 047559 330 HAHVAAT-MEPIQQYNLQC-LSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSKRHDEWD 407 (444)
Q Consensus 330 ~~~va~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~w~ 407 (444)
++.++.. +.....+.+.+ |+++++++||...++.. .+.+.+++++|+++|+|+||||.++|++|+.++ ..|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~ 339 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWA 339 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHH
Confidence 9998854 34557789986 99999999999887432 123344678899999999999999999998873 3465
Q ss_pred HHHhcc---cCC-CCC-----ccChHHHHHHhhcCCchhhhcccCC
Q 047559 408 EILNSN---ILD-LPQ-----QNGILSVLRLSYHYLPSQLKRCFAY 444 (444)
Q Consensus 408 ~~l~~~---~~~-~~~-----~~~i~~~l~~sy~~Lp~~lk~cflY 444 (444)
..++.. .+. +.. ...+..+|.+||+.||+++|.||+|
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~ 385 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTD 385 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 554432 211 111 1458999999999999999999986
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=258.14 Aligned_cols=240 Identities=20% Similarity=0.325 Sum_probs=175.9
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccc-ccCCc-ceeEEEEeCCCCCHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAV-EDSKF-DVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~f-~~~~wv~vs~~~~~~~~~ 260 (444)
++.||||+.+++.|.++|.... +..++|+|+||||+||||||.+++++..+ .. +| +.++|++++.. +...++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEG-CFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHH-HCTTCEEEEEEESC-CHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHh-hCCCceEEEECCCC-chHHHH
Confidence 4569999999999999997532 34589999999999999999999998655 55 78 58999999875 333344
Q ss_pred HHH---HHHhccC----CCCcccHHHHHHHHHHHhCC--ceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh
Q 047559 261 RAL---LESITFA----SCDLKALNEVQVQIKRAVDG--KKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA 331 (444)
Q Consensus 261 ~~i---l~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~ 331 (444)
..+ ...+... .....+...+...+...+.+ +++||||||+|+. ..+. .+ .+|++||||||+.
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCc
Confidence 433 3444421 12344567777788888865 7899999999874 2222 22 5689999999999
Q ss_pred HHHhhcCCCCccc---CCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHH
Q 047559 332 HVAATMEPIQQYN---LQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLLRSKRHDEWDE 408 (444)
Q Consensus 332 ~va~~~~~~~~~~---l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~w~~ 408 (444)
.++..+.. ..++ +++|+.+++++||...++.. .......+.+|+++|+|+|||+..+|+.|+.+. ..|..
T Consensus 268 ~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 268 SVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp GGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred HHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHH
Confidence 88765432 3333 36899999999999987531 112234568899999999999999999998763 35766
Q ss_pred HHhcccCC----CC-----CccChHHHHHHhhcCCchhhhcccCC
Q 047559 409 ILNSNILD----LP-----QQNGILSVLRLSYHYLPSQLKRCFAY 444 (444)
Q Consensus 409 ~l~~~~~~----~~-----~~~~i~~~l~~sy~~Lp~~lk~cflY 444 (444)
+++..... +. ....+..++..||+.||++.|.||+|
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~ 385 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTD 385 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 65532111 11 12468899999999999999999875
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.67 E-value=4.9e-17 Score=128.75 Aligned_cols=78 Identities=28% Similarity=0.440 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHHHhhhhhhh
Q 047559 8 LSAVFQVLFDRLAPHGGDLLNFVSQLGGGVASELKKWEDCLMMIQAVLRDAEEK--QLTDEAVKLWLDDLRDLAYDAEDI 85 (444)
Q Consensus 8 ~s~~~~~l~~~l~~~~~~~~~~~~~~~~gv~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~Wl~~lr~~ayd~eD~ 85 (444)
+++++++|.+.+. .++.... ||++++++|+++|++|++||.+|+.+ +..|++++.|++|||++|||+|||
T Consensus 3 v~~ll~KL~~ll~------~E~~l~~--gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~ 74 (115)
T 3qfl_A 3 ISNLIPKLGELLT------EEFKLHK--GVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDV 74 (115)
T ss_dssp TCSHHHHHHHHHH------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHh--chHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555433 3355553 59999999999999999999999987 568999999999999999999999
Q ss_pred HHHHHHHH
Q 047559 86 LDEFATKA 93 (444)
Q Consensus 86 lD~~~~~~ 93 (444)
||+|.++.
T Consensus 75 iD~f~~~~ 82 (115)
T 3qfl_A 75 VDKFLVQV 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=3e-15 Score=143.69 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=130.3
Q ss_pred cCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC------C
Q 047559 182 TERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF------D 255 (444)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~------~ 255 (444)
.+..|+||+.+++.|.+++... +++.|+|++|+|||||++++.+.. . .+|+++.... +
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~-------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER-------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS-------S-EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc-------C-cEEEEeecccccccCCC
Confidence 4567999999999999988642 589999999999999999998752 1 6677765432 5
Q ss_pred HHHHHHHHHHHhcc---------------C-CC--CcccHHHHHHHHHHHhCC-ceEEEEEeCCCCCCh-------hcHH
Q 047559 256 VLNISRALLESITF---------------A-SC--DLKALNEVQVQIKRAVDG-KKLLLVLDDVWNEDY-------CLWE 309 (444)
Q Consensus 256 ~~~~~~~il~~l~~---------------~-~~--~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~~ 309 (444)
...++..+...+.. . .. ...+...+...+.+.+.. ++++|||||++..+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 55666666655432 0 00 123455566666665543 389999999977432 2233
Q ss_pred HhhcccCCCCCCcEEEEecCChHH-Hhh---------c-CC-CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHH
Q 047559 310 DLKAPFLAAAPNSKIIVTTRHAHV-AAT---------M-EP-IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFR 377 (444)
Q Consensus 310 ~l~~~l~~~~~gs~iivTTr~~~v-a~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 377 (444)
.+...+ +...+.++|+|++.... ... . +. ...+.+.+|+.+++.+++....-....... ....
T Consensus 154 ~L~~~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~ 228 (350)
T 2qen_A 154 LFAYAY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEI 228 (350)
T ss_dssp HHHHHH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHH
T ss_pred HHHHHH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHH
Confidence 333322 22357889999887653 221 0 11 236899999999999999765321111111 2345
Q ss_pred HHHHHHcCCChHHHHHHHHHh
Q 047559 378 EKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 378 ~~i~~~~~G~Plai~~~~~~L 398 (444)
..|++.|+|+|+++..++..+
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHH
Confidence 779999999999999988754
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=3.9e-15 Score=146.41 Aligned_cols=212 Identities=13% Similarity=0.066 Sum_probs=133.8
Q ss_pred CCcccccchhHHHHHHHH-hcCCCCCCCCceEEEE--EecCCChHHHHHHHHhhcccccc--CCcc-eeEEEEeCCCCCH
Q 047559 183 ERAVFGRQQDKAKMLEMV-LTDTSSDHSNLAVIPI--VGMAGVGKTTLAREVYNDRAVED--SKFD-VKAWVCVSDDFDV 256 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~~--~~f~-~~~wv~vs~~~~~ 256 (444)
+..++||+.+++.+...| .....+.......+.| +|++|+|||||++.+++...... ..|+ ..+|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4211100011256666 99999999999999998643210 0122 3578887777788
Q ss_pred HHHHHHHHHHhccCCCC-cccHHHHHHHHHHHhC--CceEEEEEeCCCCCC------hhcHHHhhcccCCC---C--CCc
Q 047559 257 LNISRALLESITFASCD-LKALNEVQVQIKRAVD--GKKLLLVLDDVWNED------YCLWEDLKAPFLAA---A--PNS 322 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 322 (444)
..++..++.+++...+. ..+...+...+.+.+. +++++|||||+|... ...+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998654321 2234455666666664 779999999997742 23333333333221 2 345
Q ss_pred EEEEecCChHHHhhc--------CC-CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcC------CC
Q 047559 323 KIIVTTRHAHVAATM--------EP-IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCG------GL 387 (444)
Q Consensus 323 ~iivTTr~~~va~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------G~ 387 (444)
.+|+||+...+...+ .. ...+.+.+|+.++.+++|...+....... ....+....|++.|+ |+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCc
Confidence 588788765532111 11 12389999999999999976542111100 111334567889999 99
Q ss_pred hHHHHHHHH
Q 047559 388 PLAAKTLGG 396 (444)
Q Consensus 388 Plai~~~~~ 396 (444)
|..+..+..
T Consensus 259 p~~~~~l~~ 267 (412)
T 1w5s_A 259 ARRAIVALK 267 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 976655543
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=1.6e-14 Score=138.98 Aligned_cols=194 Identities=14% Similarity=0.138 Sum_probs=124.5
Q ss_pred cCCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCC-----CCH
Q 047559 182 TERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDD-----FDV 256 (444)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~ 256 (444)
.+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++.+.+... . ..+|+++... .+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN--L----PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT--C----CEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC--C----CEEEEEchhhccccCCCH
Confidence 45679999999999999 632 5899999999999999999987632 1 2478887642 344
Q ss_pred HHHHHHHHHHhcc-------------CC-----C-----------CcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh--
Q 047559 257 LNISRALLESITF-------------AS-----C-----------DLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY-- 305 (444)
Q Consensus 257 ~~~~~~il~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-- 305 (444)
..++..+...+.. .. + .......+...+.+... ++++|||||++..+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 4555554443311 00 0 01234444445544333 499999999977432
Q ss_pred -hcHHHhhcccCCCCCCcEEEEecCChHH-Hhh---------c-CC-CCcccCCCCChHhHHHHHHHhhcc-CCCCCccc
Q 047559 306 -CLWEDLKAPFLAAAPNSKIIVTTRHAHV-AAT---------M-EP-IQQYNLQCLSDEDCWSLFMMHAFV-GQDITAQQ 371 (444)
Q Consensus 306 -~~~~~l~~~l~~~~~gs~iivTTr~~~v-a~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~ 371 (444)
..|..+...+.+...+.++|+|++.... ... + +. ...+.+.+|+.+++.+++...... +... +
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~ 230 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF---K 230 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC---C
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC---C
Confidence 2232222333222346789999997653 221 1 11 246889999999999999875421 1111 1
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 047559 372 ISDLFREKVVGKCGGLPLAAKTLGGLLR 399 (444)
Q Consensus 372 ~~~~~~~~i~~~~~G~Plai~~~~~~L~ 399 (444)
.. ..|++.|+|+|+++..++..+.
T Consensus 231 ~~----~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 231 DY----EVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp CH----HHHHHHHCSCHHHHHHHHHHHH
T ss_pred cH----HHHHHHhCCCHHHHHHHHHHHc
Confidence 11 6799999999999999987654
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.48 E-value=9.3e-13 Score=119.23 Aligned_cols=197 Identities=14% Similarity=0.113 Sum_probs=120.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++||+..++.+..++..... ...+.|+|++|+||||||+.+++...... .+.. ..+.. ... ...+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~-----~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~---~~~~~---~~~-~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA---TPCGV---CDN-CREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC-----CSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCS---SCCSC---SHH-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCC---CCCcc---cHH-HHHH
Confidence 4599999999999999876432 24889999999999999999987643211 1100 00000 000 0000
Q ss_pred HHHh-----ccCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHH
Q 047559 264 LESI-----TFASCDLKALNEVQVQIKRAV-----DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHV 333 (444)
Q Consensus 264 l~~l-----~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~v 333 (444)
.... ............. ..+.+.+ .+++.+|||||++..+...++.+...+.....+..+|+||+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred hccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 0000 0000001111111 1222221 356799999999887666777777777665667888888876431
Q ss_pred H--hhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 334 A--ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 334 a--~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
. ........+.+.+++.++..+++.+.+........ .+....|++.|+|+|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 11223357899999999999999887643221111 2345679999999999988876543
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.5e-12 Score=126.58 Aligned_cols=222 Identities=15% Similarity=0.066 Sum_probs=139.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccc----cCC-cceeEEEEeCCCC-CHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE----DSK-FDVKAWVCVSDDF-DVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~vs~~~-~~~ 257 (444)
..++||+.+++.+..++.....+ ...+.+.|+|++|+|||+||+.+++..... ... ....+|++++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN--EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT--CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 67999999999999877542111 233689999999999999999999864221 001 3456788887766 888
Q ss_pred HHHHHHHHHhccCCC--CcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHh-hcccCCCCCCcEEEEecCChHH-
Q 047559 258 NISRALLESITFASC--DLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDL-KAPFLAAAPNSKIIVTTRHAHV- 333 (444)
Q Consensus 258 ~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTTr~~~v- 333 (444)
.++..++..+..... ...+...+...+.+.+..++.+|||||++......+..+ ...+.....+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888998888843222 122345566777778877666999999976432211122 2222221267888999886532
Q ss_pred -------HhhcCCCCcccCCCCChHhHHHHHHHhhccC-CCCCccchHHHHHHHHHHHcC---CChHHH-HHHHHH--hc
Q 047559 334 -------AATMEPIQQYNLQCLSDEDCWSLFMMHAFVG-QDITAQQISDLFREKVVGKCG---GLPLAA-KTLGGL--LR 399 (444)
Q Consensus 334 -------a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---G~Plai-~~~~~~--L~ 399 (444)
...+ ...+.+.+++.++..++|...+... .....++ +..+.|++.|+ |.|..+ ..+-.. +.
T Consensus 178 ~~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 178 DYMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1111 1379999999999999999875311 1111111 23355777777 988743 333222 22
Q ss_pred ---CC-CHHHHHHHHhc
Q 047559 400 ---SK-RHDEWDEILNS 412 (444)
Q Consensus 400 ---~~-~~~~w~~~l~~ 412 (444)
.. +.+.+..+++.
T Consensus 253 ~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp TSSSCCCHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHH
Confidence 12 67777766654
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=2.4e-12 Score=125.16 Aligned_cols=202 Identities=11% Similarity=0.044 Sum_probs=128.7
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEEEEeCCCCCHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAWVCVSDDFDVLNI 259 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~ 259 (444)
+..++||+.+++.+..++...-.. .....+.|+|++|+||||||+.+++...... +.-...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRG--EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSS--CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 367999999999999988542111 2336899999999999999999997642210 01234578888888888899
Q ss_pred HHHHHHHhccCCCC-cccHHHHHHHHHHHh--CCceEEEEEeCCCCCChh--cHHHhhccc---CCC--CCCcEEEEecC
Q 047559 260 SRALLESITFASCD-LKALNEVQVQIKRAV--DGKKLLLVLDDVWNEDYC--LWEDLKAPF---LAA--APNSKIIVTTR 329 (444)
Q Consensus 260 ~~~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~~~l---~~~--~~gs~iivTTr 329 (444)
+..++.+++...+. ..+...+...+.+.+ .+++.+|||||++..... ..+.+...+ ... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999998654332 223555566666666 456899999999764322 222222222 111 44567788877
Q ss_pred ChHHH-----hhcCCC--CcccCCCCChHhHHHHHHHhhcc--CCCCCccchHHHHHHHHHHHcC---CChHH
Q 047559 330 HAHVA-----ATMEPI--QQYNLQCLSDEDCWSLFMMHAFV--GQDITAQQISDLFREKVVGKCG---GLPLA 390 (444)
Q Consensus 330 ~~~va-----~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---G~Pla 390 (444)
..... ...... ..+.+.+++.++..+++...+.. ......+. ..+.+++.++ |.|-.
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~G~~r~ 244 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD----VVPLCAALAAREHGDARR 244 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS----HHHHHHHHHHSSSCCHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH----HHHHHHHHHHHhccCHHH
Confidence 65221 111112 46899999999999999887532 11112222 2355777777 99943
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=5.1e-12 Score=123.02 Aligned_cols=208 Identities=12% Similarity=0.064 Sum_probs=138.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
+.++||+.+++.+..++.....+..+..+.+.|+|++|+|||||++.+++..... .-...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK--TTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS--CCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh--cCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999998865211111223489999999999999999999764221 01356788888888888999999
Q ss_pred HHHhccCCCC-cccHHHHHHHHHHHh--CCceEEEEEeCCCCCChhcHHHhhcccCCC-C---CCcEEEEecCChHHHhh
Q 047559 264 LESITFASCD-LKALNEVQVQIKRAV--DGKKLLLVLDDVWNEDYCLWEDLKAPFLAA-A---PNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 264 l~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~---~gs~iivTTr~~~va~~ 336 (444)
+..++...+. ..+...+...+...+ .+++.+|||||++..+......+...+... . .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888654321 223455555666555 366899999999887655566665555331 1 46778888877654332
Q ss_pred cC-------CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHc---------CCChHHHHHHH
Q 047559 337 ME-------PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKC---------GGLPLAAKTLG 395 (444)
Q Consensus 337 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Plai~~~~ 395 (444)
+. ....+.+.+++.++..+++...+....... ....+....|++.+ +|.|..+..+.
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 21 113689999999999999988753211000 11233456788888 78876555443
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.40 E-value=9.3e-12 Score=110.98 Aligned_cols=187 Identities=12% Similarity=0.024 Sum_probs=117.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++...... .-...+.++.+.......+.. .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVRH-K 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTCHHHHHH-H
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccChHHHHH-H
Confidence 458999999999999986532 13489999999999999999987642211 111233344443333222211 1
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHH--HhhcCCCC
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHV--AATMEPIQ 341 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~v--a~~~~~~~ 341 (444)
+..+..... ...+++.+|||||++......++.+...+.....+.++|+||+.... ........
T Consensus 89 ~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 89 IKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 111110000 01257889999999887666666676666555667888888876531 11122334
Q ss_pred cccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 342 QYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 342 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
.+.+.+++.++..+++.+.+........ ......|++.++|.|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 7899999999999999887643221111 23446688999999997655443
No 14
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=4.5e-12 Score=123.09 Aligned_cols=208 Identities=14% Similarity=0.099 Sum_probs=128.9
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHH
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 262 (444)
+..++||+.+++.+.+++...-.. .....+.|+|++|+|||||++.+++........-...+|+++....+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~--~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE--EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT--CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 467999999999999988642101 223689999999999999999999864321100235678887776777788888
Q ss_pred HHHHhccCCC-CcccHHHHHHHHHHHhC--CceEEEEEeCCCCCC----hhcHHHhhcccCC-CCCCcEEEEecCChHHH
Q 047559 263 LLESITFASC-DLKALNEVQVQIKRAVD--GKKLLLVLDDVWNED----YCLWEDLKAPFLA-AAPNSKIIVTTRHAHVA 334 (444)
Q Consensus 263 il~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTTr~~~va 334 (444)
++..++.... ...+.......+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 8777754322 12234455556666653 458999999996632 2233334333321 23456778888765432
Q ss_pred hhcC-----CC--CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcC---CChHHHHHH
Q 047559 335 ATME-----PI--QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCG---GLPLAAKTL 394 (444)
Q Consensus 335 ~~~~-----~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Plai~~~ 394 (444)
..+. .. ..+.+.+++.++..+++...+...... ......+...+++.++ |.|..+..+
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP--GVLPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS--SCSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2111 11 478999999999999998764211100 0112233455777776 999854443
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=9.1e-11 Score=111.05 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=116.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|++..++.+..++.... ...+.|+|++|+|||++|+.+++...-.. .....++++.+...... .++.+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChH-HHHHH
Confidence 458999999999999986532 12389999999999999999987642111 11123444444332222 22222
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHH--HhhcCCC
Q 047559 264 LESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHV--AATMEPI 340 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~v--a~~~~~~ 340 (444)
+..+.... ..+ .+++.+||+||++......++.+...+.....++.+|+||....- .......
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22221000 001 356889999999887666666676666655667888888876431 1112233
Q ss_pred CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHH-HHHHH
Q 047559 341 QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLA-AKTLG 395 (444)
Q Consensus 341 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla-i~~~~ 395 (444)
..+.+.+++.++..+++...+....-... .+....|++.|+|.|.. +..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 57899999999999999876532211111 23456799999999954 44443
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=9.7e-10 Score=104.09 Aligned_cols=189 Identities=15% Similarity=0.093 Sum_probs=115.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+++...-.. .-...+.++.+..... +.+...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCch-HHHHHH
Confidence 358999999999999887542 23489999999999999999987632111 1112233333321111 111111
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHH--hhcCCCC
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVA--ATMEPIQ 341 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va--~~~~~~~ 341 (444)
+..+.... ....+++.+||+||++......++.+...+.....++++|+||....-. .......
T Consensus 97 ~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 11110000 0112568899999998876666777777766556678888888764310 1111124
Q ss_pred cccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 342 QYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 342 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
.+.+.+++.++...++...+.... .. ...+....|++.++|.|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEG-LE---LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTT-CE---ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcC-CC---CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 688999999999999887653321 11 112345678899999999766554433
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.99 E-value=4.6e-09 Score=98.09 Aligned_cols=207 Identities=12% Similarity=0.066 Sum_probs=123.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc--CCc--ceeEEEEeCCCCCHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED--SKF--DVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f--~~~~wv~vs~~~~~~~~~ 260 (444)
.+.||++|...|...|...-.+ .....+.|+|++|+|||++++.+++...... ... -..+.+++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~--~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS--SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 4789999999998877652111 3346889999999999999999998753211 011 135677777778888999
Q ss_pred HHHHHHhccCCCC-cccHHHHHHHHHHH--hCCceEEEEEeCCCCCChhcHHHhhcccC--CCC-CCcEEEEecCCh---
Q 047559 261 RALLESITFASCD-LKALNEVQVQIKRA--VDGKKLLLVLDDVWNEDYCLWEDLKAPFL--AAA-PNSKIIVTTRHA--- 331 (444)
Q Consensus 261 ~~il~~l~~~~~~-~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--~~~-~gs~iivTTr~~--- 331 (444)
..|++++.+.... ......+...+... -.+++++|+||+++... .-+.+...+. ... ....||.++...
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999654221 12233333333332 24678999999997753 2222332221 111 122333334321
Q ss_pred H--H----HhhcCCCCcccCCCCChHhHHHHHHHhhccCCC-----------------------------------CCcc
Q 047559 332 H--V----AATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQD-----------------------------------ITAQ 370 (444)
Q Consensus 332 ~--v----a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-----------------------------------~~~~ 370 (444)
. + ...+. ...+.+.+++.+|-.+++.+++-.... ...+
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINN 255 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCH
Confidence 1 1 11221 146889999999999999888633111 0134
Q ss_pred chHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 371 QISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 371 ~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
..++-++++++...|-.=.|+.++-.
T Consensus 256 ~ai~~~A~~vA~~~GD~R~Al~ilr~ 281 (318)
T 3te6_A 256 KITQLIAKNVANVSGSTEKAFKICEA 281 (318)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHH
Confidence 45666667666666766666665543
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.98 E-value=6.9e-09 Score=100.16 Aligned_cols=195 Identities=14% Similarity=0.115 Sum_probs=114.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|++..++.+...+..... ...+.|+|++|+||||+|+.+.+...... .+. ...+... .....+.
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~-----~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~---~~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAKGLNCET-GIT---ATPCGVC----DNCREIE 83 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCC-----CSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSC---SSCCSSS----HHHHHHH
T ss_pred hccCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCC---CCCCccc----HHHHHHh
Confidence 589999999999998865432 24789999999999999999987542211 110 0000000 0001111
Q ss_pred HHh-------ccC-CCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-H-
Q 047559 265 ESI-------TFA-SCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-V- 333 (444)
Q Consensus 265 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-v- 333 (444)
... ... .........+...+... ..+++.+||+||++..+...++.+...+.....+..+|++|.... +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 00111222222221111 135678999999988766667777777665556677777776432 1
Q ss_pred HhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 334 AATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 334 a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
.........+.+.+++.++...++.+.+...+-... .+....|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHHH
Confidence 112223367899999999999999876532111111 23346689999999998876653
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.93 E-value=9.4e-09 Score=96.88 Aligned_cols=183 Identities=13% Similarity=0.070 Sum_probs=113.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcc-eeEEEEeCCCCCHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFD-VKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~ 262 (444)
..++|++..++.+..++.... ...+.|+|++|+|||++|+.+++...-. .+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~--~~~~~~~~~~~~~~~~~------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGE--NWRDNFIEMNASDERGI------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHHTT--CHHHHCEEEETTSTTCT------
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhcCC--cccCCeEEEeCccccCh------
Confidence 358999999999888875421 2338999999999999999998763111 111 1233343332111
Q ss_pred HHHHhccCCCCcccHHHHHHHHHHH--h-CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-H-Hhhc
Q 047559 263 LLESITFASCDLKALNEVQVQIKRA--V-DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-V-AATM 337 (444)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-v-a~~~ 337 (444)
.........+... + .+++.+||+|+++.......+.+...+.....++.+|+||.... + ....
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 0111111111111 1 25678999999987766666777777766566778888876543 1 1112
Q ss_pred CCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 338 EPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 338 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
.....+.+.+++.++...++...+....-... .+....+++.++|.|..+.....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 23357899999999999998876633221112 23346688899999986655443
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.83 E-value=8.7e-09 Score=97.49 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=107.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|++..+..+...+....... .....+.|+|++|+|||+||+.+++... . ..++++++......++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~--~----~~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAHELG--V----NLRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-SCCCCCEEECCTTCCCHHHHHHHHHHHT--C----CEEEECTTTCCSHHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-CCCCcEEEECCCCCCHHHHHHHHHHHhC--C----CEEEEeccccCChHHHHH--
Confidence 469999999888887775311000 1225688999999999999999987632 1 123444433222222111
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCC------------------CCCcEEE
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAA------------------APNSKII 325 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~ii 325 (444)
.+...+ .++.+|+|||++.........+...+... ..+..+|
T Consensus 83 -------------------~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 83 -------------------ILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -------------------HHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -------------------HHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 111101 34668999999776544444444333221 1235667
Q ss_pred EecCChH-HHh-hcCCC-CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 047559 326 VTTRHAH-VAA-TMEPI-QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL 398 (444)
Q Consensus 326 vTTr~~~-va~-~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 398 (444)
.||.... +.. ..... ..+.+.+++.++...++...+....... ..+....+++.++|.|-.+..+...+
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI----TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666432 111 11122 4688999999999999887764322111 12345678899999999887776554
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.74 E-value=3.3e-08 Score=85.44 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=82.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC----CcceeEEEEeCCCCCHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS----KFDVKAWVCVSDDFDVLNI 259 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~ 259 (444)
..++||+.+++.+.+.+.... ...+.|+|++|+|||+||+.+++....... .....++++++. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 358999999999999986532 256889999999999999999876421100 012233443321 1
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHh--CCceEEEEEeCCCCCC--------hhcHHHhhcccCCCCCCcEEEEecC
Q 047559 260 SRALLESITFASCDLKALNEVQVQIKRAV--DGKKLLLVLDDVWNED--------YCLWEDLKAPFLAAAPNSKIIVTTR 329 (444)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTTr 329 (444)
. .. .............+...+ .+++.+|||||++... ......+...+ . ..+..+|+||.
T Consensus 90 ~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~-~~~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-A-RGELHCVGATT 159 (195)
T ss_dssp H-------TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-H-TTSCCEEEEEC
T ss_pred h-------cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-c-cCCeEEEEeCC
Confidence 0 00 000011111111222212 4567899999997642 11123333222 2 23456777776
Q ss_pred ChHHHhh-------cCCCCcccCCCCChHhHHHHH
Q 047559 330 HAHVAAT-------MEPIQQYNLQCLSDEDCWSLF 357 (444)
Q Consensus 330 ~~~va~~-------~~~~~~~~l~~L~~~~~~~lf 357 (444)
....... ......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 5543221 122235778888877766543
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=1.1e-07 Score=90.79 Aligned_cols=195 Identities=10% Similarity=0.058 Sum_probs=113.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcc-eeEEEEeCCCCCHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFD-VKAWVCVSDDFDVLNISRA 262 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~ 262 (444)
..++|++..++.+..++..... ..+.|+|++|+||||+|+.+.+...... .+. ....++.+...... .+.+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~------~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 108 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANL------PHMLFYGPPGTGKTSTILALTKELYGPD-LMKSRILELNASDERGIS-IVRE 108 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTC------CCEEEECSTTSSHHHHHHHHHHHHHHHH-HHTTSEEEECSSSCCCHH-HHTT
T ss_pred HHhhCCHHHHHHHHHHHhcCCC------CEEEEECCCCCCHHHHHHHHHHHhCCCc-ccccceEEEccccccchH-HHHH
Confidence 4589999999999998865321 2389999999999999999987642111 111 12233433322222 2222
Q ss_pred HHHHhccCCC-CcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HH-hhcCC
Q 047559 263 LLESITFASC-DLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VA-ATMEP 339 (444)
Q Consensus 263 il~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va-~~~~~ 339 (444)
.+..+..... ..... .....-.++.-+|++|+++.........+...+.......++|++|.... +. .....
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 2222211100 00000 00111123556999999987765556666666655555677777775432 11 11111
Q ss_pred CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHH
Q 047559 340 IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLG 395 (444)
Q Consensus 340 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 395 (444)
...+.+.+++.++....+...+....-... ++....|++.++|.|-.+..+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 246889999999999998876532211111 2345679999999998755443
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.69 E-value=3e-08 Score=89.25 Aligned_cols=174 Identities=11% Similarity=0.040 Sum_probs=98.3
Q ss_pred cccccc---hhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHH
Q 047559 185 AVFGRQ---QDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 185 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 261 (444)
.++|.. ..+..+..++... ....+.|+|++|+||||||+.+++..... .....|++++.-...
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS-----
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH-----
Confidence 466532 4455555554432 22689999999999999999998764322 234456665432110
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhc--HHHhhcccCCC-CCC-cEEEEecCChH-----
Q 047559 262 ALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCL--WEDLKAPFLAA-APN-SKIIVTTRHAH----- 332 (444)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTTr~~~----- 332 (444)
+. .. + +.+ .++.+|||||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~~------~~-------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----ST------AL-------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----CG------GG-------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----HH------HH-------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 00 0 011 346799999997654332 23333332211 122 24777776321
Q ss_pred ----HHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 333 ----VAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 333 ----va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
+...+.....+.+.+++.++..+++...+....... ..+....|++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL----PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC----CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHccCCHHHHHHHHH
Confidence 222222225789999999999999988763221111 233456788899999877665543
No 24
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.67 E-value=2e-07 Score=89.67 Aligned_cols=196 Identities=16% Similarity=0.107 Sum_probs=107.9
Q ss_pred CcccccchhHHH---HHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEe----CCCCCH
Q 047559 184 RAVFGRQQDKAK---MLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCV----SDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v----s~~~~~ 256 (444)
..++|++..+.. +.+.+.... ...+.+.|+|++|+|||+||+.+.+...... .| +.++. +.....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~~~-~~---~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDT-PF---TAIAGSEIFSLEMSK 115 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSC-CE---EEEEGGGGSCSSSCH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcccC-Cc---ccccchhhhhcccch
Confidence 469999988666 455554332 2236899999999999999999998743211 11 12221 122333
Q ss_pred HHHHHHHHHHhccCC----------------------------CC--cccHHHHHHHHHHHh-----CCc----eEEEEE
Q 047559 257 LNISRALLESITFAS----------------------------CD--LKALNEVQVQIKRAV-----DGK----KLLLVL 297 (444)
Q Consensus 257 ~~~~~~il~~l~~~~----------------------------~~--~~~~~~~~~~l~~~l-----~~k----r~LlVl 297 (444)
.+.+...+....... .. ......+...+.... .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 444444433311100 00 000112222222211 233 359999
Q ss_pred eCCCCCChhcHHHhhcccCCCCCCcEEEEecCC-----------------hHHHhhcCCCCcccCCCCChHhHHHHHHHh
Q 047559 298 DDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH-----------------AHVAATMEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 298 Ddv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~-----------------~~va~~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
|+++.......+.+...+...... .++++|.. +.+.. ....+.+.+++.++..+++...
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHH
Confidence 999887666666676666544333 34444431 12222 2245799999999999999877
Q ss_pred hccCCCCCccchHHHHHHHHHHHcC-CChHHHHHHH
Q 047559 361 AFVGQDITAQQISDLFREKVVGKCG-GLPLAAKTLG 395 (444)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~~~~-G~Plai~~~~ 395 (444)
+........ .+....|++.+. |.|-.+..+.
T Consensus 272 ~~~~~~~~~----~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 272 CEEEDVEMS----EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHTTCCBC----HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhcCCCHHHHHHHH
Confidence 643222112 234466888887 8777655443
No 25
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.66 E-value=3.5e-07 Score=90.06 Aligned_cols=184 Identities=14% Similarity=0.050 Sum_probs=107.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
...+.|+|++|+||||||+.+++...... .-...++++.+ .+...+...+.... ...+...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~------~~~~~~~~~~~~~~---------~~~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSE------KFLNDLVDSMKEGK---------LNEFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHH------HHHHHHHHHHHTTC---------HHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHH------HHHHHHHHHHHccc---------HHHHHHHhcC
Confidence 46799999999999999999998642211 01123444432 33444444443211 1123333443
Q ss_pred ceEEEEEeCCCCCCh--hcHHHhhcccCC-CCCCcEEEEecCCh---------HHHhhcCCCCcccCCCCChHhHHHHHH
Q 047559 291 KKLLLVLDDVWNEDY--CLWEDLKAPFLA-AAPNSKIIVTTRHA---------HVAATMEPIQQYNLQCLSDEDCWSLFM 358 (444)
Q Consensus 291 kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTTr~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~ 358 (444)
+.-+|+|||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 677999999976532 222334333322 24567888888752 233333334578999999999999998
Q ss_pred HhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHH------hcCC--CHHHHHHHHhccc
Q 047559 359 MHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGL------LRSK--RHDEWDEILNSNI 414 (444)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~------L~~~--~~~~w~~~l~~~~ 414 (444)
+.+....-...+. +...|++.+.|.+-.+..+... +... +.+.+..++....
T Consensus 274 ~~~~~~~~~i~~e----~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 274 KMLEIEHGELPEE----VLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHTCCCCTT----HHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHHHcCCCCCHH----HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 8763211111122 2456888999988655433221 2222 7788888877643
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.65 E-value=2.2e-07 Score=91.44 Aligned_cols=198 Identities=17% Similarity=0.141 Sum_probs=111.2
Q ss_pred CcccccchhH---HHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDK---AKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++|.+..+ ..+...+... ....+.|+|++|+||||||+.+.+.... . ++.++.......-+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~~~---~-----f~~l~a~~~~~~~i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYANA---D-----VERISAVTSGVKEI 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHTTC---E-----EEEEETTTCCHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHhCC---C-----eEEEEeccCCHHHH
Confidence 4588988777 6677777553 2367999999999999999999986321 1 22222211111111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEE-ecCChHH---Hhh
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIV-TTRHAHV---AAT 336 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TTr~~~v---a~~ 336 (444)
+.++... ......+++.+|+||+++.......+.|...+.. + ...+|. ||.+... ...
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHH
Confidence 1111111 0111246788999999987755555555555543 2 233333 5544321 122
Q ss_pred cCCCCcccCCCCChHhHHHHHHHhhccCC-C--CCccchHHHHHHHHHHHcCCChHHHHHHHHHh---cC-------C-C
Q 047559 337 MEPIQQYNLQCLSDEDCWSLFMMHAFVGQ-D--ITAQQISDLFREKVVGKCGGLPLAAKTLGGLL---RS-------K-R 402 (444)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~--~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L---~~-------~-~ 402 (444)
.....++.+.+++.++...++.+.+.... . .......++....|++.++|.+-.+..+...+ .. . +
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It 233 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECC
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccC
Confidence 23345788999999999999887763311 0 01112233445678888999887665544332 11 1 6
Q ss_pred HHHHHHHHhcc
Q 047559 403 HDEWDEILNSN 413 (444)
Q Consensus 403 ~~~w~~~l~~~ 413 (444)
.+....++...
T Consensus 234 ~e~v~~~l~~~ 244 (447)
T 3pvs_A 234 PELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhhh
Confidence 67777776653
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.64 E-value=9.2e-07 Score=81.83 Aligned_cols=185 Identities=16% Similarity=0.110 Sum_probs=99.3
Q ss_pred CCcccccchhHHHHHHHHhcCCCC-------CCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC
Q 047559 183 ERAVFGRQQDKAKMLEMVLTDTSS-------DHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD 255 (444)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 255 (444)
-..++|.+..++.|.+.+...-.. +......+.|+|++|+|||+||+.+++.... ..+.++.+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~------~~~~v~~~~~~~ 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA------TFIRVVGSELVK 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC------EEEEEEGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehHHHHH
Confidence 346899999999998876431000 0012356999999999999999999876321 122233222110
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-----------ChhcHHHhhcc---cC--CCC
Q 047559 256 VLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNE-----------DYCLWEDLKAP---FL--AAA 319 (444)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~---l~--~~~ 319 (444)
. ............+.......+.+|+|||++.. +......+... +. ...
T Consensus 90 --------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 --------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp --------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred --------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0 00011111122222233456689999999652 11111222222 21 223
Q ss_pred CCcEEEEecCChHHHh--hcC--C-CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCC-ChHHHHH
Q 047559 320 PNSKIIVTTRHAHVAA--TME--P-IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGG-LPLAAKT 393 (444)
Q Consensus 320 ~gs~iivTTr~~~va~--~~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~ 393 (444)
.+..||.||....... ... . ...+.+..++.++..++|...+.... ......+ ..++..+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~----~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN-LAEDVNL----EEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC-CCCcCCH----HHHHHHcCCCCHHHHHH
Confidence 4567777887542211 111 1 13688999999999999988763321 1112223 447777777 4534443
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.62 E-value=3e-07 Score=87.39 Aligned_cols=179 Identities=16% Similarity=0.133 Sum_probs=104.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|++..+..+..++....... .....+.|+|++|+|||+||+.+.+... . . .+.++++......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~ia~~~~--~-~---~~~~~~~~~~~~~------ 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRN-ECLDHILFSGPAGLGKTTLANIISYEMS--A-N---IKTTAAPMIEKSG------ 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTT-SCCCCEEEECSTTSSHHHHHHHHHHHTT--C-C---EEEEEGGGCCSHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcC-CCCCeEEEECcCCCCHHHHHHHHHHHhC--C-C---eEEecchhccchh------
Confidence 469999999999888876521100 2335689999999999999999977631 1 1 2233332211111
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC------------------CCcEEE
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA------------------PNSKII 325 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 325 (444)
.....+.. ..+..+|+||+++.........+...+.... ++..+|
T Consensus 96 ---------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 96 ---------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ---------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ---------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11111111 2456789999998765554555544443211 124566
Q ss_pred EecCChHH-H-hhcCCC-CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 326 VTTRHAHV-A-ATMEPI-QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 326 vTTr~~~v-a-~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
.+|..... . ...... ..+.+.+++.++...++.+.+-... . ....+....|++.+.|.|-.+..+..
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~---~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-K---TCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-C---EECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 66654321 1 111222 5689999999999999887663221 1 11233456688899999965554443
No 29
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.61 E-value=2.7e-07 Score=87.18 Aligned_cols=179 Identities=18% Similarity=0.106 Sum_probs=105.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|++..+..+..++.... ...++.+.|++|+|||++|+.+.+... ...+.++.+.. . .+.++..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~-~~~i~~~ 92 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-K-IDFVRGP 92 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-C-HHHHHTH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-C-HHHHHHH
Confidence 468999999999999987542 225788889999999999999987631 22344554331 2 2222222
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC-hhcHHHhhcccCCCCCCcEEEEecCChH-----HHhhc
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNED-YCLWEDLKAPFLAAAPNSKIIVTTRHAH-----VAATM 337 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTTr~~~-----va~~~ 337 (444)
+....... ...+++-+|+|||++... ....+.+...+.....+.++|+||.... +...
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR- 156 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR- 156 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH-
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh-
Confidence 22111100 012467899999998765 4455556655544445678888887643 2222
Q ss_pred CCCCcccCCCCChHhHHHHH-------HHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 338 EPIQQYNLQCLSDEDCWSLF-------MMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 338 ~~~~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
...+.+.+++.++-.+++ ...+....-...+ .+....|++.++|.+-.+.....
T Consensus 157 --~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~~L~ 217 (324)
T 3u61_B 157 --CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIGELD 217 (324)
T ss_dssp --SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHHHHH
T ss_pred --CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHHHHH
Confidence 246889999988743332 2222111111111 13446688889888765444433
No 30
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=4.7e-07 Score=86.58 Aligned_cols=199 Identities=10% Similarity=0.023 Sum_probs=106.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccc-cccC--Ccce----------------
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRA-VEDS--KFDV---------------- 244 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~--~f~~---------------- 244 (444)
..++|++..++.+..++.... ....+.|+|++|+||||+++.+..... ...+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 458899988888877762221 112289999999999999998877421 0000 0110
Q ss_pred ----eEEEEeCCCC-CHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC
Q 047559 245 ----KAWVCVSDDF-DVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA 319 (444)
Q Consensus 245 ----~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 319 (444)
.+.+..+... ......+.++..+..... ..... .+.. +.+++-+|+||++...+....+.+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 0111111100 000012222222211100 00000 0000 23356799999998877666666766665545
Q ss_pred CCcEEEEecCChH-HH-hhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHH
Q 047559 320 PNSKIIVTTRHAH-VA-ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGG 396 (444)
Q Consensus 320 ~gs~iivTTr~~~-va-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 396 (444)
.+..+|++|.... +. ........+++.+++.++....+...+...+-.... ++....|++.++|.+-.+..+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 5677888776532 11 112233678999999999999988765322111110 12346688899999876655543
No 31
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=5.7e-07 Score=90.55 Aligned_cols=194 Identities=13% Similarity=0.062 Sum_probs=106.5
Q ss_pred CcccccchhHHHHHHHHhcCC-----------CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC
Q 047559 184 RAVFGRQQDKAKMLEMVLTDT-----------SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD 252 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 252 (444)
..++|++..++.+.+++.... ....+..+.+.|+|++|+||||+|+.+++.. .+ ..+.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCCC
Confidence 469999999999999986510 0000234689999999999999999998864 11 234455554
Q ss_pred CCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHH--HhCCceEEEEEeCCCCCChh---cHHHhhcccCCCCCCcEEEEe
Q 047559 253 DFDVLNISRALLESITFASCDLKALNEVQVQIKR--AVDGKKLLLVLDDVWNEDYC---LWEDLKAPFLAAAPNSKIIVT 327 (444)
Q Consensus 253 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~--~l~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~iivT 327 (444)
.... .++...+........ .......... ...+++.+|+||+++..... .+..+...+.. .+..||++
T Consensus 113 ~~~~-~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli 185 (516)
T 1sxj_A 113 VRSK-TLLNAGVKNALDNMS----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILI 185 (516)
T ss_dssp CCCH-HHHHHTGGGGTTBCC----STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEE
T ss_pred cchH-HHHHHHHHHHhcccc----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEE
Confidence 3332 223322222211110 0000000000 12356889999999765322 22444443332 23345555
Q ss_pred cCChH---HHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH-HHHHH
Q 047559 328 TRHAH---VAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL-AAKTL 394 (444)
Q Consensus 328 Tr~~~---va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 394 (444)
+.... +.........+.+.+++.++..+++...+....-...+. ....|++.++|.+- ++..+
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~----~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN----VIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT----HHHHHHHHTTTCHHHHHHHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHcCCcHHHHHHHH
Confidence 54322 222222234688999999999998877654322222222 23568888999554 44443
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.54 E-value=1.9e-06 Score=79.21 Aligned_cols=195 Identities=14% Similarity=0.158 Sum_probs=99.7
Q ss_pred cccccchhHHHHHH-------HHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 185 AVFGRQQDKAKMLE-------MVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 185 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.++|....+++++. .+..... .....+.|+|++|+|||+||+.+++.. .... +.++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~---~~~~~vLl~G~~GtGKT~la~~ia~~~-----~~~~-~~i~~~~~~--- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDR---TPLVSVLLEGPPHSGKTALAAKIAEES-----NFPF-IKICSPDKM--- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSS---CSEEEEEEECSTTSSHHHHHHHHHHHH-----TCSE-EEEECGGGC---
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCC---CCCeEEEEECCCCCcHHHHHHHHHHHh-----CCCE-EEEeCHHHh---
Confidence 46777776666655 3322111 445789999999999999999998863 1111 222222210
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC----------ChhcHHHhhcccCC---CCCCcEE
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNE----------DYCLWEDLKAPFLA---AAPNSKI 324 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~i 324 (444)
.. .........+...+......+..+|+|||++.. .....+.+...+.. ......|
T Consensus 102 ----------~g-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 ----------IG-FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ----------TT-CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ----------cC-CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00 000001112222333334567889999998542 11112233332221 2234456
Q ss_pred EEecCChHHHhh---cCC-CCcccCCCCCh-HhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCC------ChHHHHH
Q 047559 325 IVTTRHAHVAAT---MEP-IQQYNLQCLSD-EDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGG------LPLAAKT 393 (444)
Q Consensus 325 ivTTr~~~va~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G------~Plai~~ 393 (444)
|.||........ .+. ...+.+.+++. ++...++.+.. . .. ......|++.+.| ++-++..
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCCCccccHHHHHHH
Confidence 777777654332 122 24578888887 66666665431 1 11 2234567888877 3343333
Q ss_pred HHHHhcCCCHHHHHHHHh
Q 047559 394 LGGLLRSKRHDEWDEILN 411 (444)
Q Consensus 394 ~~~~L~~~~~~~w~~~l~ 411 (444)
+-..........+..++.
T Consensus 242 l~~a~~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 242 IEMSLQMDPEYRVRKFLA 259 (272)
T ss_dssp HHHHTTSCGGGHHHHHHH
T ss_pred HHHHhhhchHHHHHHHHH
Confidence 333222224455555544
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.54 E-value=1.7e-06 Score=78.82 Aligned_cols=189 Identities=15% Similarity=0.143 Sum_probs=97.4
Q ss_pred CcccccchhHHHHHHHH---hcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMV---LTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
..++|.+..++.+.+++ ..... .+....+.+.|+|++|+|||++|+.+++.... . .+.++++.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~---~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV---P---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---C---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C---EEEechHHHHh--
Confidence 35889888777775543 22111 00022356889999999999999999886321 1 23344333111
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC------------hhc---HHHhhcccCC--CCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNED------------YCL---WEDLKAPFLA--AAP 320 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~~~---~~~l~~~l~~--~~~ 320 (444)
.........+...+.......+.+|+|||++... ... ...+...+.. ...
T Consensus 78 -------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 -------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0000111112222333334557899999997641 111 1222222221 233
Q ss_pred CcEEEEecCChHHH--hhcC--CC-CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH-HHHHH
Q 047559 321 NSKIIVTTRHAHVA--ATME--PI-QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL-AAKTL 394 (444)
Q Consensus 321 gs~iivTTr~~~va--~~~~--~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 394 (444)
+..||.||...... .... .. ..+.+...+.++-.+++.+.+.... ... ........+++.+.|.+- .+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-LTQ--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-CCB--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-CCc--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 55677777654321 1112 12 4577889999999999887663321 111 112223668888888754 45444
Q ss_pred HH
Q 047559 395 GG 396 (444)
Q Consensus 395 ~~ 396 (444)
..
T Consensus 222 ~~ 223 (262)
T 2qz4_A 222 CN 223 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.52 E-value=2.3e-06 Score=81.13 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=102.9
Q ss_pred chhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcccccc-------------------CCcceeEEEEe
Q 047559 190 QQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVED-------------------SKFDVKAWVCV 250 (444)
Q Consensus 190 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~v 250 (444)
+...+.+...+..+. -...+.++|++|+|||++|+.+.+...-.. .|++. .++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEec
Confidence 344566666665432 225799999999999999999876532110 01221 22222
Q ss_pred C---CCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEe
Q 047559 251 S---DDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVT 327 (444)
Q Consensus 251 s---~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 327 (444)
. ....+. ..+.+.+.+.... ..+++-++|+|+++..+....+.+...+.....++.+|++
T Consensus 82 ~~~~~~~~i~-~ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 82 EKGKNTLGVD-AVREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp CTTCSSBCHH-HHHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred cccCCCCCHH-HHHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 1 111111 1122222221110 1256779999999887766677777777665667777777
Q ss_pred cCChH-HH-hhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 328 TRHAH-VA-ATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 328 Tr~~~-va-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
|.+.. +. ...+....+.+.+++.++..+.+.+.. ... .+....+++.++|.|..+..+
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 76543 21 222333578999999999999887764 111 123356888999999766543
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.51 E-value=6.6e-07 Score=83.82 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=90.1
Q ss_pred cccccchhHHHHHHHHhcCC---------CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC
Q 047559 185 AVFGRQQDKAKMLEMVLTDT---------SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD 255 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 255 (444)
.++|.+..++.+.+.+.... -........+.|+|++|+|||+||+.+++...... .....-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG-YVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT-SSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CcCCCcEEEEcHH--
Confidence 47888888877776543210 00013345799999999999999998877643222 2211223333311
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC---------ChhcHHHhhcccCCCCCCcEEEE
Q 047559 256 VLNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNE---------DYCLWEDLKAPFLAAAPNSKIIV 326 (444)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiv 326 (444)
.+... ............+... +..+|+||+++.. .......+...+.....+..||+
T Consensus 109 ----------~l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ----------DLVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ----------GTCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ----------Hhhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 01000 0001111112222222 3459999999743 33444556666655556778888
Q ss_pred ecCChHHHhh--cCC------CCcccCCCCChHhHHHHHHHhhc
Q 047559 327 TTRHAHVAAT--MEP------IQQYNLQCLSDEDCWSLFMMHAF 362 (444)
Q Consensus 327 TTr~~~va~~--~~~------~~~~~l~~L~~~~~~~lf~~~~~ 362 (444)
||........ ..+ ...+.+.+++.++...++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8865432111 111 15688999999999999987764
No 36
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.39 E-value=1e-06 Score=75.55 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=38.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++||+.++..+.+.+.... ...+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999986532 2567899999999999999998764
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.38 E-value=1.1e-05 Score=76.01 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=100.5
Q ss_pred CcccccchhHHHHHHHHhcC---C---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTD---T---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
..++|.+..++.|.+.+... . .......+.+.|+|++|+|||+||+.+++... . . .+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~-~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--S-T---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--C-E---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--C-C---EEEEchH------
Confidence 46899999999988876210 0 00112346799999999999999999988632 1 1 1223321
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHH-HHhCCceEEEEEeCCCCCChh-----------cHHHhhcccC---CCCCCc
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIK-RAVDGKKLLLVLDDVWNEDYC-----------LWEDLKAPFL---AAAPNS 322 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs 322 (444)
++ ..... .........+. ..-..++.+|+||+++..... ....+...+. ....+.
T Consensus 86 ~l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----HTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----hhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 11000 11112222222 222456789999999753210 1222322222 234456
Q ss_pred EEEEecCChH-----HHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC-hHHHHHHH
Q 047559 323 KIIVTTRHAH-----VAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL-PLAAKTLG 395 (444)
Q Consensus 323 ~iivTTr~~~-----va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 395 (444)
.||.||.... +... -...+.+...+.++-.++|...+........+. ....|++.+.|. +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPCVLTKE----DYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHH----HHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHcCCCCHHHHHHHH
Confidence 6666776532 2221 124577888899999999988763321111222 235688888874 54555444
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.38 E-value=7.8e-06 Score=78.09 Aligned_cols=185 Identities=13% Similarity=0.066 Sum_probs=98.2
Q ss_pred CcccccchhHHHHHHHHhcC---C---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTD---T---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
..++|.+..++.|.+.+... . .......+-|.|+|++|+|||+||+.+++.... . .+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---T---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC---E---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---C---EEEeeHH------
Confidence 45899999998888876311 0 000022356889999999999999999986421 1 1223221
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh-----------cHHHhhcccC---CCCCCcE
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYC-----------LWEDLKAPFL---AAAPNSK 323 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~ 323 (444)
++. .... ......+...+...-..++.+|+||+++..... ....+...+. ....+..
T Consensus 119 ~l~----~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DLV----SKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HHH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HHh----hhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 111 1000 011111111222222457889999999764211 0222222221 1234556
Q ss_pred EEEecCChH-----HHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC-hHHHHHHH
Q 047559 324 IIVTTRHAH-----VAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL-PLAAKTLG 395 (444)
Q Consensus 324 iivTTr~~~-----va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 395 (444)
||.||.... +.. .-...+.+...+.++-.++|...+........ ......|++.+.|. |-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776542 222 22245778888999999998877633211111 22235688889884 44454443
No 39
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=3.9e-06 Score=79.72 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=104.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcc-eeEEEEeCCCCCHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFD-VKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i 263 (444)
.++|.+..++.+...+..+. +..+.++|++|+||||+|+.+.....-. .+. ...-++.+.......+ +..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIYGK--NYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHHTT--SHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHcCC--CccceEEEEcCcccccHHHH-HHH
Confidence 47898888888888776432 2238999999999999999998763211 111 1122222222121111 111
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH-HH-hhcCCCC
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH-VA-ATMEPIQ 341 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~-va-~~~~~~~ 341 (444)
+..+.... ..+.+.+-++|+|+++.......+.+...+......+.+|++|.... +. ...+...
T Consensus 97 i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11111000 00123467899999977665666667666655555677777775432 11 1112234
Q ss_pred cccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 342 QYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 342 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
.+.+.+++.++..+.+.+.+-... ..- .+...+.|++.++|.+--+..+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~-~~i---~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEK-LKL---SPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTT-CCB---CHHHHHHHHHHHTTCHHHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 678999999998888876552211 111 1233466888889988754433
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.37 E-value=8.5e-06 Score=76.81 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=86.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
...+.|+|++|+||||||+.+++.....+ ...+++++ .++...+...+... .... +...+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~---~~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~- 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMYK- 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHHH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHhc-
Confidence 35789999999999999999998642211 12344443 23333443333211 1111 122222
Q ss_pred ceEEEEEeCCCCCCh--hcHHHhhcccCC-CCCCcEEEEecCCh---------HHHhhcCCCCcccCCCCChHhHHHHHH
Q 047559 291 KKLLLVLDDVWNEDY--CLWEDLKAPFLA-AAPNSKIIVTTRHA---------HVAATMEPIQQYNLQCLSDEDCWSLFM 358 (444)
Q Consensus 291 kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTTr~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~ 358 (444)
+.-+|+|||++.... ...+.+...+.. ...|..||+||... .+...+....++.+.+ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 366999999976532 122333333321 13456788877632 2222332335688999 9999999998
Q ss_pred HhhccCCCCCccchHHHHHHHHHHHcCCChHH
Q 047559 359 MHAFVGQDITAQQISDLFREKVVGKCGGLPLA 390 (444)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 390 (444)
..+....-... ++....|++.+ |.+-.
T Consensus 177 ~~~~~~~~~l~----~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNLELR----KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTCCCC----HHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCCCCC----HHHHHHHHHhC-CCHHH
Confidence 87643221111 23345677777 76543
No 41
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.36 E-value=3.4e-05 Score=71.66 Aligned_cols=184 Identities=13% Similarity=0.061 Sum_probs=97.5
Q ss_pred CcccccchhHHHHHHHHhcCCC------CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS------SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
..++|.+..++.+.+.+..... .-....+.+.|+|++|+|||+||+.+++... ...+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~------~~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS------ATFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT------CEEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEeeHHHHhh--
Confidence 4689999999998887633100 0001236789999999999999999987632 1223344333111
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHH-HHHHhCCceEEEEEeCCCCCChh-----------cHHHhhccc---CCC--CC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQ-IKRAVDGKKLLLVLDDVWNEDYC-----------LWEDLKAPF---LAA--AP 320 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l---~~~--~~ 320 (444)
. .. ......... +......++.+|+||+++..... ....+...+ +.. ..
T Consensus 93 ------------~-~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 ------------K-YV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ------------S-SC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ------------c-cc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 00 011111222 22222456789999999653110 011122211 111 23
Q ss_pred CcEEEEecCChH-----HHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH-HHHHH
Q 047559 321 NSKIIVTTRHAH-----VAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL-AAKTL 394 (444)
Q Consensus 321 gs~iivTTr~~~-----va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 394 (444)
+..||.||.... +...+ ...+.+...+.++...++...+........ ......|++.+.|.+- .+..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 456666776532 22222 245667777888888887766532211111 2234568888999875 55444
Q ss_pred H
Q 047559 395 G 395 (444)
Q Consensus 395 ~ 395 (444)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.35 E-value=1.9e-05 Score=75.43 Aligned_cols=187 Identities=11% Similarity=0.042 Sum_probs=100.3
Q ss_pred CcccccchhHHHHHHHHhcC---CC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTD---TS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
..++|.+..++.|.+.+... .. ......+.+.|+|++|+|||+||+.+++... ...+.++++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG------ATFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT------CEEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC------CeEEEEehHHhhcc-
Confidence 45899999999888876420 00 0002336799999999999999999987631 12234444321110
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHH-HHHhCCceEEEEEeCCCCCCh-----------hcHHHhhcccCC----CCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQI-KRAVDGKKLLLVLDDVWNEDY-----------CLWEDLKAPFLA----AAPN 321 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~----~~~g 321 (444)
.. .........+ ...-..++.+|+||+++.... .....+...+.. ...+
T Consensus 157 --------------~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 157 --------------WV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp --------------ST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred --------------cc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 0011111122 222235678999999954210 112233333221 1234
Q ss_pred cEEEEecCChH-HH-hhcCCC-CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCC-ChHHHHHHHH
Q 047559 322 SKIIVTTRHAH-VA-ATMEPI-QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGG-LPLAAKTLGG 396 (444)
Q Consensus 322 s~iivTTr~~~-va-~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~ 396 (444)
..||.||.... +. ...... ..+.+...+.++..+++...+........ ......|++.+.| .|-.+..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55666665432 11 111122 35778888999988888776532211111 2334668888888 5556665544
No 43
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.34 E-value=5.6e-07 Score=74.31 Aligned_cols=115 Identities=14% Similarity=-0.047 Sum_probs=70.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|+...+.++.+.+..-... -.-|.|+|++|+|||++|+.+++.....+ . ..+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~----~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~-~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET----DIAVWLYGAPGTGRMTGARYLHQFGRNAQ--G-EFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC----CSCEEEESSTTSSHHHHHHHHHHSSTTTT--S-CCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCCHHHHHHHHHHhCCccC--C-CEE-EECCCCCcc--------
Confidence 4789999999998877542211 13578999999999999999987642222 1 123 555543221
Q ss_pred HHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh
Q 047559 265 ESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA 331 (444)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~ 331 (444)
.... ..+.. ...-.|+||+++.........+...+.......++|.||...
T Consensus 66 ----------~~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ----------PQLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ----------SCHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ----------hhhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 0111 11111 123478999998877666666666665445566788887743
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.34 E-value=4e-05 Score=72.08 Aligned_cols=187 Identities=13% Similarity=0.079 Sum_probs=99.2
Q ss_pred CcccccchhHHHHHHHHhcC---C---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTD---T---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.+++|.+..++.|.+.+... . .......+.+.|+|++|+|||+||+.+++... . ...+.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~---~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N---STFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--S---CEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--C---CcEEEEEhHHHHh--
Confidence 46889988888887765310 0 00112346899999999999999999998631 1 1122333332110
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-------hc----HHHhhcccC---CCCCCcE
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY-------CL----WEDLKAPFL---AAAPNSK 323 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~----~~~l~~~l~---~~~~gs~ 323 (444)
.........+...+...-..++.+|+||+++.... .. ...+...+. ....+..
T Consensus 85 -------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 -------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 00001111111122222245678999999965310 00 112222221 1234555
Q ss_pred EEEecCChH-----HHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC-hHHHHHHHH
Q 047559 324 IIVTTRHAH-----VAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL-PLAAKTLGG 396 (444)
Q Consensus 324 iivTTr~~~-----va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~ 396 (444)
||.||.... +.. .-...+.+...+.++-.++|...+........ ......|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666665432 112 22245778888999988988876532211111 22346688899887 444555543
No 45
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.29 E-value=1.6e-06 Score=74.37 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047559 189 RQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESIT 268 (444)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~ 268 (444)
....++.+.+++..-.. ..-..+.|+|++|+|||||++.+++...... .+ .+++++ ..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~-~~~~~~------~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GI-RGYFFD------TKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CC-CCCEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CC-eEEEEE------HHHHHHHHHHHhc
Confidence 33444455554433221 2236899999999999999999988753222 11 223333 4445555444433
Q ss_pred cCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHH--HhhcccCC-CCCCcEEEEecCC
Q 047559 269 FASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWE--DLKAPFLA-AAPNSKIIVTTRH 330 (444)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTTr~ 330 (444)
..... .... .+. +.-+|||||++......|. .+...+.. ...|..+|+||..
T Consensus 88 ~~~~~-----~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 88 EGKDT-----KFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HTCCS-----HHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchHH-----HHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 22111 1111 121 4568999999743323333 23332322 1256788888873
No 46
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=5.4e-06 Score=77.26 Aligned_cols=149 Identities=9% Similarity=0.025 Sum_probs=94.0
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccc-cCCcceeEEEEeCC-CCCHHHHHHHHHH
Q 047559 188 GRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE-DSKFDVKAWVCVSD-DFDVLNISRALLE 265 (444)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~vs~-~~~~~~~~~~il~ 265 (444)
|.++-++.+...+..+. .....++|++|+||||+|+.+.+..... ..+.+. .+++.+. ...+. ..+.++.
T Consensus 1 g~~~~~~~L~~~i~~~~------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id-~ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGID-DIRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTCS------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHH-HHHHHHH
Confidence 34455666777665432 4789999999999999999998642111 113333 4454432 22222 2233444
Q ss_pred HhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh-HHHhhcCCCCccc
Q 047559 266 SITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA-HVAATMEPIQQYN 344 (444)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~-~va~~~~~~~~~~ 344 (444)
.+.... ..+++-++|+|+++..+....+.|...+......+.+|++|.+. .+...+... .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 333211 12456789999998887777888888887666778888777554 232333333 899
Q ss_pred CCCCChHhHHHHHHHhh
Q 047559 345 LQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 345 l~~L~~~~~~~lf~~~~ 361 (444)
+.++++++....+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999887764
No 47
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.20 E-value=3.4e-05 Score=74.64 Aligned_cols=188 Identities=13% Similarity=0.067 Sum_probs=97.5
Q ss_pred CcccccchhHHHHHHHHhcCCC------CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS------SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
..++|.+..++.+.+.+..... ......+.+.|+|++|+|||+||+.+++... ...+.++++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~------~~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN------ATFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc------CcEEEeeHHHhhc--
Confidence 4689999999999887732100 0001236899999999999999999987631 1223333332111
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC-----------hhcHHHhhcccC---C-CCCCc
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNED-----------YCLWEDLKAPFL---A-AAPNS 322 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~---~-~~~gs 322 (444)
... ......+...+...-...+.+|+||+++... ......+...+. . .....
T Consensus 187 ~~~-------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 187 KYV-------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred ccc-------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 000 0001111111222223456799999996431 001112222221 1 12344
Q ss_pred EEEEecCChHHH--hhcCCC-CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH-HHHHHHH
Q 047559 323 KIIVTTRHAHVA--ATMEPI-QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL-AAKTLGG 396 (444)
Q Consensus 323 ~iivTTr~~~va--~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 396 (444)
.||.||...... ...... ..+.+...+.++..+++...+........ ......|++.+.|..- ++..+..
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566666543211 111222 35778889999999998876633221111 2234668888888544 5555543
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.19 E-value=2.9e-06 Score=90.70 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=80.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC--Cc-c-eeEEEEeCCCCCHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS--KF-D-VKAWVCVSDDFDVLNI 259 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f-~-~~~wv~vs~~~~~~~~ 259 (444)
..++||+.++..+++.|..... ..+.|+|++|+|||+||+.+++....... .. + ..++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~------~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSC------CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 4589999999999999865432 34689999999999999999876421110 11 1 223343322110
Q ss_pred HHHHHHHhccCCCCcccHHH-HHHHHHHHhC-CceEEEEEeCCCCCC--------hhcHHHhhcccCCCCCCcEEEEecC
Q 047559 260 SRALLESITFASCDLKALNE-VQVQIKRAVD-GKKLLLVLDDVWNED--------YCLWEDLKAPFLAAAPNSKIIVTTR 329 (444)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTTr 329 (444)
.... ...... +...+...-. +++.+|++|+++... ....+.+...+. ..+..+|.+|.
T Consensus 240 ---------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEEC
T ss_pred ---------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecC
Confidence 0000 011111 1222222222 467899999997642 111112332222 12345666555
Q ss_pred ChHHHh------hcCCCCcccCCCCChHhHHHHHHHh
Q 047559 330 HAHVAA------TMEPIQQYNLQCLSDEDCWSLFMMH 360 (444)
Q Consensus 330 ~~~va~------~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (444)
...... .......+.+.+++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 443311 1122345889999999999988643
No 49
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.15 E-value=6.7e-05 Score=73.82 Aligned_cols=188 Identities=14% Similarity=0.115 Sum_probs=98.6
Q ss_pred CcccccchhHHHHHHHHhcC----CC--CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTD----TS--SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.+++|.+..++.|.+.+... .. ......+.+.|+|++|+|||+||+.+++... ...++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-------~~~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-------NSTFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-------SSEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-------CCCEEEEeHHH---
Confidence 46899999888888776310 00 0012346899999999999999999998631 11233333221
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-------h----cHHHhhcccCC---CCCCcE
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY-------C----LWEDLKAPFLA---AAPNSK 323 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~----~~~~l~~~l~~---~~~gs~ 323 (444)
+. ....+.. ......+. ...-..++.+|+||+++.... . ....+...+.. ...+..
T Consensus 204 -l~----~~~~g~~--~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LV----SKWLGES--EKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp -------------C--CCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HH----hhhcchH--HHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11 1110100 11122221 222235678999999975411 0 11223333322 234566
Q ss_pred EEEecCChHHH--hhcCCC-CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC-hHHHHHHH
Q 047559 324 IIVTTRHAHVA--ATMEPI-QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL-PLAAKTLG 395 (444)
Q Consensus 324 iivTTr~~~va--~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 395 (444)
||.||...... ...... ..+.+...+.++...+|...+........ ......|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 77677654211 111222 45778888888888888776532111111 12335688889884 44454443
No 50
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.14 E-value=9.5e-06 Score=80.50 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=79.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC--Cc-ce-eEEEEeCCCCCHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS--KF-DV-KAWVCVSDDFDVLNI 259 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f-~~-~~wv~vs~~~~~~~~ 259 (444)
+.++||+.++..++..|..... .-+.|+|++|+|||+||+.+++....... .. +. .+.++++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~------~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-------
Confidence 3599999999999999875322 35689999999999999999876321100 01 11 11222220
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHh----
Q 047559 260 SRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAA---- 335 (444)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~---- 335 (444)
...+. -..... ..+...-..++.+|++|. .....+.+...+.. ...++|.+|.......
T Consensus 247 ------~~~g~--~e~~~~---~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 247 ------KYRGE--FEDRLK---KVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred ------cccch--HHHHHH---HHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 00000 001111 222222345678999991 11223334444432 2345666655443211
Q ss_pred ---hcCCCCcccCCCCChHhHHHHHHHhh
Q 047559 336 ---TMEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 336 ---~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
.......+.+.+++.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11122468999999999999998654
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.11 E-value=3.2e-05 Score=72.01 Aligned_cols=181 Identities=13% Similarity=0.109 Sum_probs=96.3
Q ss_pred CcccccchhHHHHHHHHhcC---C----CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLTD---T----SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~---~----~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
.+++|.+..++.+.+.+... . ..+-...+.+.|+|++|+|||+||+.+++... . . ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~----~--~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--A----N--FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C----E--EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--C----C--EEEEE----h
Confidence 35899998888887766421 0 00002236799999999999999999998642 1 1 22222 2
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh--------------hcHHHhhcccCC--CCC
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY--------------CLWEDLKAPFLA--AAP 320 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 320 (444)
.++.. ...+.. ... +...+.......+.+|+||+++.... .....+...+.. ...
T Consensus 83 ~~l~~----~~~g~~--~~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLT----MWFGES--EAN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHH----HHHTTC--TTH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHh----hhcCch--HHH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 22222 221111 111 12223333345678999999964210 012333333321 234
Q ss_pred CcEEEEecCChHHH-h-hcC--CC-CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHH
Q 047559 321 NSKIIVTTRHAHVA-A-TME--PI-QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLA 390 (444)
Q Consensus 321 gs~iivTTr~~~va-~-~~~--~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 390 (444)
+..||.||...... . ... .. ..+.+...+.++-.+++...+-... ......+. .++..+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCCHH----HHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccchHH----HHHHHcCCCCHH
Confidence 56777777655322 1 122 12 4578888999998888877653211 11122233 355667776543
No 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.07 E-value=3e-05 Score=77.03 Aligned_cols=185 Identities=14% Similarity=0.134 Sum_probs=99.8
Q ss_pred CcccccchhHHHHHHHHhcCCCC-------CCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSS-------DHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
..++|.+..++.+.+++...-.. +.....-+.|+|++|+|||+||+.+.+... . ..+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~----~fv~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A----FFFLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S----EEEEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C----CEEEEEchH----
Confidence 35899999999988876432000 002235689999999999999999987631 1 223333211
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-----------hcHHHhhcccCC--CCCCcE
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY-----------CLWEDLKAPFLA--AAPNSK 323 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~ 323 (444)
+ ...+ .......+...+.....+++.+|+||+++.... .....|...+.. ...+..
T Consensus 274 --l----~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 --I----MSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp --H----HTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred --h----hhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 1100 011112222333344456778999999943211 112233333332 233456
Q ss_pred EEEecCChHH-Hhhc-C---CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCC-hHHHHHH
Q 047559 324 IIVTTRHAHV-AATM-E---PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGL-PLAAKTL 394 (444)
Q Consensus 324 iivTTr~~~v-a~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~ 394 (444)
||.||..... ...+ . -...+.+...+.++-.++|..++... .......+ ..+++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~-~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM-KLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS-CBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC-CCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 6667765532 1111 1 12357889999999999998775321 11122233 3466777774 4444444
No 53
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00013 Score=69.83 Aligned_cols=179 Identities=17% Similarity=0.101 Sum_probs=95.8
Q ss_pred CcccccchhHHHHHHHHhcC----C---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLTD----T---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
.++.|-++.+++|.+.+.-+ + .-+-...+-+.++|++|.|||.||+.+++.... ..+.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~------~f~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC------KFIRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC------EEEEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC------CceEEEhHHhhc-
Confidence 45788888777776654321 0 001133467899999999999999999987432 123344332111
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh--------hc------HHHhhcccC--CCCC
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY--------CL------WEDLKAPFL--AAAP 320 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~~------~~~l~~~l~--~~~~ 320 (444)
.........+...+...-...+++|++|+++..-. .. ...+...+. ....
T Consensus 221 --------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 --------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred --------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00011111111112222245689999999976311 00 112222222 2234
Q ss_pred CcEEEEecCChHHH--hhcC---CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 321 NSKIIVTTRHAHVA--ATME---PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 321 gs~iivTTr~~~va--~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
+..||.||...+.. .... -...+.+...+.++-.++|..+.-. .....+-++ ..|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-MNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SBCCSSCCH----HHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-CCCCccCCH----HHHHHHCCCCC
Confidence 55667777654321 1112 2256888888888888888766522 111222233 44778888764
No 54
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.05 E-value=5.9e-06 Score=72.14 Aligned_cols=118 Identities=23% Similarity=0.202 Sum_probs=61.3
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCC
Q 047559 192 DKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFAS 271 (444)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 271 (444)
.++.+..++...... .....+.|+|++|+|||+||+.+++.... ....++|++++ ++...+...+..
T Consensus 37 ~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 445555555543221 11267899999999999999999987532 22345566543 344444332221
Q ss_pred CCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHH--hhc-ccCCC-CCCcEEEEecCC
Q 047559 272 CDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWED--LKA-PFLAA-APNSKIIVTTRH 330 (444)
Q Consensus 272 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTTr~ 330 (444)
.........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112222222221 2399999996643333332 222 22111 245678888874
No 55
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.05 E-value=5e-05 Score=70.78 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHHhcC--CCC------CCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTD--TSS------DHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|++..++.+...+... ... .......+.|+|++|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999888777541 000 00112468899999999999999998764
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.04 E-value=2e-05 Score=73.68 Aligned_cols=135 Identities=15% Similarity=0.166 Sum_probs=73.2
Q ss_pred cccccchhHHHHHHHHhcCC---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDT---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 261 (444)
.++|.+..++.+...+.... .........+.|+|++|+|||++|+.+++..... -...+.++++...... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGGCCSTT-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeecccccccc-cHH
Confidence 47788888888877765421 1111234689999999999999999998764221 1223455554432211 111
Q ss_pred HHHHHhccCCC--CcccHHHHHHHHHHHh-CCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEe
Q 047559 262 ALLESITFASC--DLKALNEVQVQIKRAV-DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVT 327 (444)
Q Consensus 262 ~il~~l~~~~~--~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 327 (444)
.+ ++.... ....... +...+ ....-+|+||++..........+...+.... ..+.+|.|
T Consensus 94 ~l---~g~~~~~~~~~~~~~----~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~t 166 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQ----LTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMT 166 (311)
T ss_dssp HH---HCCCTTSTTTTTCCH----HHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEE
T ss_pred Hh---cCCCCccccccccch----HHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEe
Confidence 11 111110 0000011 22222 2345699999998776666666655543211 23447777
Q ss_pred cCC
Q 047559 328 TRH 330 (444)
Q Consensus 328 Tr~ 330 (444)
|..
T Consensus 167 tn~ 169 (311)
T 4fcw_A 167 SNL 169 (311)
T ss_dssp EST
T ss_pred ccc
Confidence 765
No 57
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.04 E-value=4.2e-06 Score=68.80 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=62.9
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|+...+.++.+.+..-... ..-|.|+|.+|+|||++|+.+++... -++.+.........
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~----~~~vll~G~~GtGKt~lA~~i~~~~~---------~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR----TSPVFLTGEAGSPFETVARYFHKNGT---------PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC----SSCEEEEEETTCCHHHHHGGGCCTTS---------CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHhCC---------CeEEechhhCChHh-----
Confidence 5789998888888876542111 13478999999999999999887521 23322221111111
Q ss_pred HHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCC-CCCcEEEEecC
Q 047559 265 ESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAA-APNSKIIVTTR 329 (444)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTTr 329 (444)
...+.+.. +.-.|+||++..........+...+... ..+.++|.||.
T Consensus 67 ----------------~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 67 ----------------PMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp ----------------HHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred ----------------hhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 01111111 2347899999887665555555555432 34567888776
No 58
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.03 E-value=2.9e-05 Score=76.82 Aligned_cols=98 Identities=9% Similarity=-0.006 Sum_probs=60.8
Q ss_pred EEEEEeCCCCCChhcHHHhhcccCCCCCCcEEE-Ee---------cC----ChHH-HhhcCCCCcccCCCCChHhHHHHH
Q 047559 293 LLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKII-VT---------TR----HAHV-AATMEPIQQYNLQCLSDEDCWSLF 357 (444)
Q Consensus 293 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vT---------Tr----~~~v-a~~~~~~~~~~l~~L~~~~~~~lf 357 (444)
-++++|+++..+...++.|...+...... .+| .| |. ...+ ....+....+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999888777788888777665444 344 44 32 1110 111122245799999999999999
Q ss_pred HHhhccCCCCCccchHHHHHHHHHHHc-CCChHHHHHHH
Q 047559 358 MMHAFVGQDITAQQISDLFREKVVGKC-GGLPLAAKTLG 395 (444)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~G~Plai~~~~ 395 (444)
.+.+-....... ++....|++.+ +|.|.....+.
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHHH
Confidence 877532111111 23345677788 78887655544
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.97 E-value=1.9e-05 Score=72.09 Aligned_cols=131 Identities=14% Similarity=0.060 Sum_probs=67.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|....+..+.+.+..-... ...+.|+|.+|+|||+||+.+++...... ...+.++++.-. .+.+..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~----~~~vll~G~~GtGKt~la~~i~~~~~~~~---~~~~~v~~~~~~--~~~~~~-- 75 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPL----DKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAALN--ENLLDS-- 75 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTS----CSCEEEECCTTSCHHHHHHHHHHTSTTTT---SCEEEEEGGGSC--HHHHHH--
T ss_pred cceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHhcCccC---CCeEEEecCCCC--hhHHHH--
Confidence 4789998888888766542211 14678999999999999999987642111 123445555421 222222
Q ss_pred HHhccCCCCccc-H-HHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCC-----------CCCcEEEEecCC
Q 047559 265 ESITFASCDLKA-L-NEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAA-----------APNSKIIVTTRH 330 (444)
Q Consensus 265 ~~l~~~~~~~~~-~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTTr~ 330 (444)
.+.+....... . ......+. ....-+|+||++..........|...+... ..+.+||.||..
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp -HHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred -HhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 11111100000 0 00000011 112458999999877655555555444321 134678888875
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.96 E-value=6.2e-05 Score=79.46 Aligned_cols=156 Identities=12% Similarity=0.141 Sum_probs=87.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEE-EeCCCCCHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWV-CVSDDFDVLNI 259 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv-~vs~~~~~~~~ 259 (444)
..++||+.++..+++.|..... .-+.|+|++|+|||++|+.+.+..... .....+.+|. +.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~------~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSS------CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccCC------CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 3589999999999999865422 457899999999999999998753211 1012333332 11110
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCC--------Chhc-HHHhhcccCCCCCCcEEEEecC
Q 047559 260 SRALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNE--------DYCL-WEDLKAPFLAAAPNSKIIVTTR 329 (444)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~-~~~l~~~l~~~~~gs~iivTTr 329 (444)
+... ............+.+.+ ..++.+|++||++.. ...+ ...+...+ . ..+..+|.+|.
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~-~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTT 323 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-S-SCCCEEEEEEC
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-h-CCCeEEEEEeC
Confidence 0000 01112222222333333 345789999999754 1112 22233332 2 23456666666
Q ss_pred ChHHHhhc-------CCCCcccCCCCChHhHHHHHHHhh
Q 047559 330 HAHVAATM-------EPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 330 ~~~va~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
........ .....+.+..++.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 55443221 112357899999999888887543
No 61
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00022 Score=69.23 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=96.2
Q ss_pred CcccccchhHHHHHHHHhcC---CC----CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLTD---TS----SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
.++.|-++.+++|.+.+.-+ +. -+-...+-|.++|++|+|||+||+.+++.... ..+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~------~~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA------NFIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehhhhcc-
Confidence 46788888777776654321 00 01134578999999999999999999987432 123344333111
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh----------h----cHHHhhcccC--CCCC
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY----------C----LWEDLKAPFL--AAAP 320 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------~----~~~~l~~~l~--~~~~ 320 (444)
.........+.......-...+++|++|+++..-. . ....+...+. ....
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00011111111112222245689999999975210 0 1122333222 2234
Q ss_pred CcEEEEecCChHHHh--hcCCC---CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 321 NSKIIVTTRHAHVAA--TMEPI---QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 321 gs~iivTTr~~~va~--~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
+..||.||....... ...+. ..+.+...+.++-.++|..+.-.- .....-++ ..|++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV-KKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS-CBCSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC-CCCcccCH----HHHHHhCCCCC
Confidence 567777887654321 12221 357888888888888887665321 11122233 44777888754
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.92 E-value=3.6e-05 Score=81.21 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=80.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccC--C-cceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDS--K-FDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~-f~~~~wv~vs~~~~~~~~~ 260 (444)
..++||+.++..+...|..... .-+.++|++|+|||++|+.+.+...-... . .++. ++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~------~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC----------
T ss_pred CCccCchHHHHHHHHHHhCCCC------CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc--------
Confidence 3599999999999999876432 34789999999999999999876311100 0 1111 221111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHhh----
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAAT---- 336 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~~---- 336 (444)
.....+ .-...+ ...+......++.+|++|.- ....+.+...+. ....++|.||........
T Consensus 245 ---g~~~~G--~~e~~l---~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ---GTKYRG--EFEDRL---KKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ---cccccc--hHHHHH---HHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 000000 000111 22233333467889999921 122233333332 234566666654442111
Q ss_pred ---cCCCCcccCCCCChHhHHHHHHHhh
Q 047559 337 ---MEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 337 ---~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
......+.+..++.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122568999999999999998543
No 63
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00012 Score=70.97 Aligned_cols=52 Identities=25% Similarity=0.234 Sum_probs=37.6
Q ss_pred CcccccchhHHHHHHHHhcC---C----CCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTD---T----SSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~---~----~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++.|-+..+++|.+.+... . .-+-...+-+.++|++|+|||+||+.+++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46889888888887655321 0 0011344789999999999999999999874
No 64
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.91 E-value=1.9e-05 Score=73.71 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=71.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|+...+..+.+.+..-... ...|.|+|.+|+|||++|+.+++.....+ ...+.++++.-. ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~----~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~---~~~v~v~~~~~~--~~l~~~- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS----DATVLIHGDSGTGKELVARALHACSARSD---RPLVTLNCAALN--ESLLES- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST----TSCEEEESCTTSCHHHHHHHHHHHSSCSS---SCCCEEECSSCC--HHHHHH-
T ss_pred CCcEECCHHHHHHHHHHHHHhCC----CCcEEEECCCCchHHHHHHHHHHhCcccC---CCeEEEeCCCCC--hHHHHH-
Confidence 35889999999888877553221 14678999999999999999987532111 122345554422 222222
Q ss_pred HHHhccCCCCccc--HHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCC-----------CCCcEEEEecCC
Q 047559 264 LESITFASCDLKA--LNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAA-----------APNSKIIVTTRH 330 (444)
Q Consensus 264 l~~l~~~~~~~~~--~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTTr~ 330 (444)
.+.+....... .......+.. . ..-+|+||++..........+...+... ....+||.||..
T Consensus 72 --~lfg~~~g~~tg~~~~~~g~~~~-a--~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 72 --ELFGHEKGAFTGADKRREGRFVE-A--DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp --HHTCCCSSCCC---CCCCCHHHH-H--TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred --HhcCccccccCchhhhhcCHHHh-c--CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 22221110000 0000001111 1 1246899999887655555555544332 134678887775
Q ss_pred h
Q 047559 331 A 331 (444)
Q Consensus 331 ~ 331 (444)
.
T Consensus 147 ~ 147 (304)
T 1ojl_A 147 D 147 (304)
T ss_dssp C
T ss_pred c
Confidence 3
No 65
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00044 Score=67.17 Aligned_cols=178 Identities=17% Similarity=0.104 Sum_probs=93.9
Q ss_pred cccccchhHHHHHHHHhc----CC---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 185 AVFGRQQDKAKMLEMVLT----DT---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
++.|-++.+++|.+.+.- .. .-+-...+-|.++|++|+|||.||+.+++.... ..+.++.+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~------~fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA------TFIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC------CeEEEEhHHhhc--
Confidence 578888888877665321 00 000134578999999999999999999987432 123343332110
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh------h--------cHHHhhcccC--CCCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY------C--------LWEDLKAPFL--AAAPN 321 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~--------~~~~l~~~l~--~~~~g 321 (444)
.........+...+...-...+++|++|+++..-. . ....+...+. ....+
T Consensus 282 -------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 -------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 00011111111122222245689999999975310 0 0111222221 12334
Q ss_pred cEEEEecCChHHH--hhcC---CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 322 SKIIVTTRHAHVA--ATME---PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 322 s~iivTTr~~~va--~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
..||.||...... .... -...+.+...+.++-.++|..+.-. ......-++ ..|++.|.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-MSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-SCBCSSCCH----HHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-CCCCCCCCH----HHHHHHCCCCC
Confidence 5566677654321 1112 2256888888888888888766522 111122233 44778888864
No 66
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.83 E-value=8.6e-05 Score=70.18 Aligned_cols=195 Identities=15% Similarity=0.146 Sum_probs=100.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
..++|.+..++.+...+......+ .....+.|+|++|+||||||+.+.+.... .|. ..+.+-.....+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---~~~---~~sg~~~~~~~~----- 92 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRG-EVLDHVLLAGPPGLGKTTLAHIIASELQT---NIH---VTSGPVLVKQGD----- 92 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTC---CEE---EEETTTCCSHHH-----
T ss_pred HHccCcHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEE---EEechHhcCHHH-----
Confidence 357888777777665553310000 22357899999999999999999986421 111 111111011111
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC------------------CCcEEE
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA------------------PNSKII 325 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 325 (444)
+.. +...+ .++-++++|+++.......+.+...+.... ....++
T Consensus 93 ----------------l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 93 ----------------MAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ----------------HHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ----------------HHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 111 11112 234577889886654333333322211110 011222
Q ss_pred -EecCChHHHhhc-CCC-CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChHHHHHHHHHh----
Q 047559 326 -VTTRHAHVAATM-EPI-QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPLAAKTLGGLL---- 398 (444)
Q Consensus 326 -vTTr~~~va~~~-~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L---- 398 (444)
.|++...+...+ ... -.+.+++.+.++..+++.+.+-.... . ...+.+..|++.++|.|-.+..+...+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~---~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-E---IEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-C---BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 344433221111 111 24789999999999999877532111 1 123346779999999997655443322
Q ss_pred --c-C-C-CHHHHHHHHhc
Q 047559 399 --R-S-K-RHDEWDEILNS 412 (444)
Q Consensus 399 --~-~-~-~~~~w~~~l~~ 412 (444)
. . . +.+.-..+++.
T Consensus 231 ~~~~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHH
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 1 2 2 66666666655
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.82 E-value=1.2e-05 Score=66.45 Aligned_cols=86 Identities=15% Similarity=0.028 Sum_probs=50.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
..+.|+|+.|+|||||++.++...... .+ ..++++...-... ..+ .+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~-~~~~~~~~~~~~~-----------------------------~~~-~~ 83 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA--GK-NAAYIDAASMPLT-----------------------------DAA-FE 83 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT--TC-CEEEEETTTSCCC-----------------------------GGG-GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc--CC-cEEEEcHHHhhHH-----------------------------HHH-hC
Confidence 589999999999999999998864321 11 2455554432211 012 24
Q ss_pred eEEEEEeCCCCCChhcHHHhhcccCC-CCCCc-EEEEecCC
Q 047559 292 KLLLVLDDVWNEDYCLWEDLKAPFLA-AAPNS-KIIVTTRH 330 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~iivTTr~ 330 (444)
.-+|||||+.......-+.+...+.. ...|. .||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 56889999976543332223332221 12233 48888873
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.78 E-value=4.9e-05 Score=80.15 Aligned_cols=156 Identities=13% Similarity=0.175 Sum_probs=89.2
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++|.+..+..+...+..... ........+.++|++|+|||++|+.+++.... .-...+.++++.-.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~---~~~~~i~i~~s~~~~~~~-- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG---DEESMIRIDMSEYMEKHS-- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS---CTTCEEEEEGGGGCSSCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---CCcceEEEechhcccccc--
Confidence 4689999988888877764321 11133447999999999999999999876411 122334555544221100
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCC-----------CCCcEEEEecC
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAA-----------APNSKIIVTTR 329 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTTr 329 (444)
. ....+...+. ....-+|+||++..........|...+..+ .....||+||.
T Consensus 566 ------------~--~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 566 ------------T--SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ------------C--C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ------------c--ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0 0011111111 123458999999887766666666555331 23568888887
Q ss_pred C-----hH----HHhhc-----CCC-CcccCCCCChHhHHHHHHHhh
Q 047559 330 H-----AH----VAATM-----EPI-QQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 330 ~-----~~----va~~~-----~~~-~~~~l~~L~~~~~~~lf~~~~ 361 (444)
. .. +...+ ... .++.+.+++.++...++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 3 11 11111 112 468889999988888776543
No 69
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.76 E-value=0.00051 Score=62.13 Aligned_cols=184 Identities=14% Similarity=0.106 Sum_probs=90.9
Q ss_pred CcccccchhHHHHHHHH---hcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMV---LTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.+++|.+..++.+.+.+ ..... .+....+-+.|+|++|+||||||+.+++... . .| +.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~-~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--V-PF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--C-CE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--C-CE---EEEeHHHHHH--
Confidence 46889887777665543 22110 0001124588999999999999999987632 1 22 3333222110
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh--------------hcHHHhhcccC--CCCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY--------------CLWEDLKAPFL--AAAPN 321 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~g 321 (444)
. ........+...+.......+.++++|+++.... .....+...+. ....+
T Consensus 84 --------~-----~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 --------M-----FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp --------S-----CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred --------H-----hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 0 0001112222233333345678999999843210 01112222221 12334
Q ss_pred cEEEEecCChH-HHhh-cCC---CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCC-ChHHHHH
Q 047559 322 SKIIVTTRHAH-VAAT-MEP---IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGG-LPLAAKT 393 (444)
Q Consensus 322 s~iivTTr~~~-va~~-~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~ 393 (444)
..||.||.... +... ... ...+.+...+.++-.+++....-. ......... ..++..+.| .+--+..
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~-~~l~~~~~~----~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR-VPLAPDIDA----AIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-SCBCTTCCH----HHHHHTCTTCCHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc-CCCCccccH----HHHHHHcCCCCHHHHHH
Confidence 56777776543 2111 111 235667777888877777665422 111111112 346777788 6654443
No 70
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.71 E-value=0.0003 Score=69.34 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=93.7
Q ss_pred CcccccchhHHHHHHHH---hcCC---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMV---LTDT---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L---~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.+++|.+..+.++.+.+ .... .-+....+-+.|+|++|+|||+||+.+++.... .| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~---~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV---PF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC---CE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC---Ce---eeCCHHHHHHH-
Confidence 35889887766665543 2210 000011245889999999999999999986421 22 23343321110
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh--------------hcHHHhhcccC--CCCCC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY--------------CLWEDLKAPFL--AAAPN 321 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~g 321 (444)
+ ...........+.......+.+|+||+++.... .....+...+. ....+
T Consensus 89 ---------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 000111222233444456789999999965311 01223332221 12345
Q ss_pred cEEEEecCChHHHh--hcCCC---CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 322 SKIIVTTRHAHVAA--TMEPI---QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 322 s~iivTTr~~~va~--~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
..||.||....... ...+. ..+.+...+.++-.+++..++-.. .......+ ..|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~-~l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK-PLAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCCH----HHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC-CCcchhhH----HHHHHhcCCCc
Confidence 67777777654321 12221 357788888888778876655321 11111122 33777888876
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00021 Score=69.39 Aligned_cols=178 Identities=11% Similarity=0.060 Sum_probs=93.3
Q ss_pred CcccccchhHHHHHHHHhc----CC---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLT----DT---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
.++.|-++.+++|.+.+.. +. .-+....+-|.++|++|.|||.||+.+++.... ..+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~------~f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA------TFLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC------CEEEEehhhhhh-
Confidence 4688988888888765322 10 001134578999999999999999999987422 123333332110
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCC-----Chh-----c----HHHhhcccCC--CC
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNE-----DYC-----L----WEDLKAPFLA--AA 319 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~-----~~~-----~----~~~l~~~l~~--~~ 319 (444)
..... .......+... -...+++|++|+++.. +.. . ...+...+.. ..
T Consensus 254 --------------~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 254 --------------MYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp --------------SCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred --------------cccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 00001 11112222221 1345799999998641 000 0 1122222222 23
Q ss_pred CCcEEEEecCChHHHh-h-cCCC---CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 320 PNSKIIVTTRHAHVAA-T-MEPI---QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 320 ~gs~iivTTr~~~va~-~-~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
.+..||.||....... . ..+. ..+.+...+.++-.++|..+.-.- ....+-++ ..|++.+.|.-
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM-TTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS-CBCSCCCH----HHHHHHCSSCC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC-CCCCcCCH----HHHHHhCCCCC
Confidence 3456666777654321 1 1222 357888888888888887654221 11111223 44777887753
No 72
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00038 Score=66.94 Aligned_cols=178 Identities=14% Similarity=0.090 Sum_probs=93.9
Q ss_pred CcccccchhHHHHHHHHhc---CCC----CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLT---DTS----SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~---~~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
.++.|-++.+++|.+.+.- ... -+....+-|.++|++|.|||.||+.+++.... . .+.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---~---fi~v~~s~l~s- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA---T---FLRIVGSELIQ- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---E---EEEEESGGGCC-
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC---C---EEEEEHHHhhh-
Confidence 4578888877777665422 110 01133478999999999999999999987432 1 12333322110
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCCh--------h------cHHHhhcccC--CCC
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRA-VDGKKLLLVLDDVWNEDY--------C------LWEDLKAPFL--AAA 319 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~--------~------~~~~l~~~l~--~~~ 319 (444)
..... .+.....+... -...+++|++|+++..-. . ....+...+. ...
T Consensus 255 --------------k~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 255 --------------KYLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp --------------SSSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred --------------ccCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 00001 11112222222 235689999999875210 0 0112222221 223
Q ss_pred CCcEEEEecCChHHHh--hcCCC---CcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 320 PNSKIIVTTRHAHVAA--TMEPI---QQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 320 ~gs~iivTTr~~~va~--~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
.+..||.||....... ...+. ..+.+...+.++-.++|..+.-. .....+-++ ..|++.+.|.-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK-MNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-SCBCSCCCH----HHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-CCCCCcCCH----HHHHHhCCCCC
Confidence 4556777777654321 11222 34778888888888888766522 111222234 34777887753
No 73
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.68 E-value=9.1e-05 Score=69.89 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=85.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++|++..+..+...+... .-+.++|++|+|||+||+.+.+... . . ...++++......++....
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~~~--~-~---~~~i~~~~~~~~~~l~g~~- 92 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKTMD--L-D---FHRIQFTPDLLPSDLIGTM- 92 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHHTT--C-C---EEEEECCTTCCHHHHHEEE-
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHHhC--C-C---eEEEecCCCCChhhcCCce-
Confidence 4889999999888887653 3588999999999999999987531 1 2 1234443333333322110
Q ss_pred HHhccCCCCcccHHHHHHHHHHHhCC--ceEEEEEeCCCCCChhcHHHhhcccCC-----------CCCCcEEEEecCCh
Q 047559 265 ESITFASCDLKALNEVQVQIKRAVDG--KKLLLVLDDVWNEDYCLWEDLKAPFLA-----------AAPNSKIIVTTRHA 331 (444)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iivTTr~~ 331 (444)
.......... +..+ ...++++|+++.........+...+.. ......||.|+...
T Consensus 93 --~~~~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 93 --IYNQHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EEETTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --eecCCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 0000000000 0001 125899999987665555444443321 12344556566522
Q ss_pred H------H-HhhcCCCC-cccCCCCChHhHHHHHHHhhc
Q 047559 332 H------V-AATMEPIQ-QYNLQCLSDEDCWSLFMMHAF 362 (444)
Q Consensus 332 ~------v-a~~~~~~~-~~~l~~L~~~~~~~lf~~~~~ 362 (444)
. + ........ .+.+.+++.++-.+++.+...
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 1 11112223 478899999999999887653
No 74
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.67 E-value=4.1e-05 Score=69.92 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=89.1
Q ss_pred CcccccchhHHHHHHHHhcCCCC------CCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSS------DHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
..++|.+..++.+.+.+..-... .....+.+.|+|++|+|||+||+.+++.... .| +.++.+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~---~~---~~v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV---PF---FSMGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC---CC---CCCCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CE---EEechHHHHH--
Confidence 45889988877777655310000 0011134789999999999999999886422 11 1111111000
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh---------------cHHHhhcccCC---CC
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYC---------------LWEDLKAPFLA---AA 319 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---------------~~~~l~~~l~~---~~ 319 (444)
.+.... ......+ +......++.+|+|||++..... ....+...+.. ..
T Consensus 83 --------~~~~~~--~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 83 --------MFVGLG--ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------SCSSSC--SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hhcchH--HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 000000 0111111 12222245689999999653211 12223333221 11
Q ss_pred CCcEEEEecCChHHH--hhcC---CCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH
Q 047559 320 PNSKIIVTTRHAHVA--ATME---PIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL 389 (444)
Q Consensus 320 ~gs~iivTTr~~~va--~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 389 (444)
....||.||...... .... -...+.+...+.++-.+++...+-.. .......+ ..|++.+.|.|-
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV-KLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS-CCCSSCCT----TTTTSSSCSSCH
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC-CCCCccCH----HHHHHHcCCCCH
Confidence 234567777655321 1112 12457888889998888887665221 11111122 236666777654
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.59 E-value=0.00018 Score=76.00 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=72.6
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNIS 260 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 260 (444)
..++|.+..+..+...+..... ........+.++|++|+|||++|+.+.+... ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~------~~~~~i~~s~~~~~~~-- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHT-- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT------CEEEEEEGGGCSSSSC--
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc------CCEEEEechhhcchhh--
Confidence 3588998888888776643211 1113345799999999999999999987631 1233445443221100
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEec
Q 047559 261 RALLESITFASCDLKALNEVQVQIKRAV-DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVTT 328 (444)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTT 328 (444)
...+.+..+......+ ...+...+ .....+|+||++........+.|...+..+. ....||.||
T Consensus 530 ---~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 530 ---VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp ---CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred ---HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 0011111111100000 11122222 2346799999998876666666655553221 235577777
Q ss_pred CC
Q 047559 329 RH 330 (444)
Q Consensus 329 r~ 330 (444)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 64
No 76
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.59 E-value=0.0001 Score=74.40 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=78.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
.+++|.++-...+.+.+.-..-+......++.|+|++|+||||||+.++..... .| .-++++...+..++....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR---KF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC---EE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC---Ce---EEEEecccchhhhhhhHH
Confidence 457888777766655432211000023368999999999999999999876421 11 223333322221111111
Q ss_pred HHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh----cHHHhhcccCCCC---------------CCcEE
Q 047559 264 LESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYC----LWEDLKAPFLAAA---------------PNSKI 324 (444)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~i 324 (444)
...++. ........+. ......-+|+||+++..... ....+...+.... ....|
T Consensus 155 ~~~ig~------~~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 155 RTYVGA------MPGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHHhcc------CchHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 111110 0001111122 12223348889999765432 1233333332110 23456
Q ss_pred EEecCChH-----HHhhcCCCCcccCCCCChHhHHHHHHHhh
Q 047559 325 IVTTRHAH-----VAATMEPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 325 ivTTr~~~-----va~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
|.||.... +...+ .++.+.+++.++-..++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 66666432 22333 468899999999888887764
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.49 E-value=0.00086 Score=66.56 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=36.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++|++..++.+...+..+ .-|.|+|++|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 4789999998888877654 468999999999999999998864
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.48 E-value=0.0014 Score=68.40 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=95.9
Q ss_pred CcccccchhHHHHHHHHh----cCC---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVL----TDT---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~----~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
.++.|-++.+++|.+.+. .+. .-+....+-|.++|++|+|||+||+.+++.... ..+.++.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~------~~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA------FFFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC------EEEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------eEEEEEhHH----
Confidence 357888888877776542 211 011134578999999999999999999987422 123443321
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh------c-----HHHhhcccCC--CCCCcE
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYC------L-----WEDLKAPFLA--AAPNSK 323 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~------~-----~~~l~~~l~~--~~~gs~ 323 (444)
+.. .........+...+.......+.+|+||+++..-.. . ...+...+.. ...+..
T Consensus 274 ------l~s-----k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ------IMS-----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HHS-----SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ------hhc-----ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 110 111111222223333344567899999999663110 0 1122222211 123445
Q ss_pred EEEecCChH-HHhhcCC----CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCChH
Q 047559 324 IIVTTRHAH-VAATMEP----IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLPL 389 (444)
Q Consensus 324 iivTTr~~~-va~~~~~----~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 389 (444)
||.||...+ +-..+.. ...+++...+.++-.++|..+.-. .....+-++ ..|++++.|..-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~-~~~~~dvdl----~~lA~~T~Gfsg 408 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKLADDVDL----EQVANETHGHVG 408 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS-SEECTTCCH----HHHHHHCCSCCH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC-CCCCcccCH----HHHHHhcCCCCH
Confidence 555665443 2222211 245788888888888888765422 111122233 447788887643
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.44 E-value=0.00046 Score=73.65 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=72.3
Q ss_pred cccccchhHHHHHHHHhcCC---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHH
Q 047559 185 AVFGRQQDKAKMLEMVLTDT---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISR 261 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 261 (444)
.++|.+..+..+...+.... .+.......+.|+|++|+|||++|+.+.+...-.+ ...+.++++.-.....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~~~~~~~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHA--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSSGG---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhccchhH---
Confidence 57999998888877765421 11113346899999999999999999987642111 1234444443221100
Q ss_pred HHHHHhccCCCC---cccHHHHHHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCC-----------CCcEEEEe
Q 047559 262 ALLESITFASCD---LKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAA-----------PNSKIIVT 327 (444)
Q Consensus 262 ~il~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 327 (444)
...+.+..+. ......+...+.. ...-+|+||++........+.|...+..+. .+..||+|
T Consensus 633 --~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp --GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred --HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 0011100000 0000111122221 234689999998877666666666654321 24457777
Q ss_pred cCC
Q 047559 328 TRH 330 (444)
Q Consensus 328 Tr~ 330 (444)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 774
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.33 E-value=0.00034 Score=64.75 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688899999999999999999874
No 81
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.27 E-value=0.0015 Score=57.31 Aligned_cols=85 Identities=24% Similarity=0.251 Sum_probs=52.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhcc-----------CC-CCcccHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITF-----------AS-CDLKALNE 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~-----------~~-~~~~~~~~ 279 (444)
.++.|+|.+|+|||||+..+.. . .-..++|++....++...+.. +...++. .. ........
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 6999999999999999999987 1 224677888766555554433 3322211 11 11112233
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCC
Q 047559 280 VQVQIKRAVDGKKLLLVLDDVWNE 303 (444)
Q Consensus 280 ~~~~l~~~l~~kr~LlVlDdv~~~ 303 (444)
....+...+..+.-+||||.+...
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHH
Confidence 444555555445779999998543
No 82
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.26 E-value=0.0002 Score=66.76 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccc
Q 047559 191 QDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..+..+.+++..... .....+.|+|++|+|||+||..+++...
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455556554321 1136789999999999999999998653
No 83
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.23 E-value=0.00018 Score=66.55 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=44.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEe--CCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCV--SDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVD 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 289 (444)
+++.|+|++|+|||+||.++... .+ ..+.|++. ....+. . ..+.+.....+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G---~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LG---GKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HH---TTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CC---CCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 67889999999999999999875 11 12356665 222110 0 0334555555566665
Q ss_pred CceEEEEEeCCCCC
Q 047559 290 GKKLLLVLDDVWNE 303 (444)
Q Consensus 290 ~kr~LlVlDdv~~~ 303 (444)
..+ +||+|++...
T Consensus 182 ~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 QHR-VIVIDSLKNV 194 (331)
T ss_dssp HCS-EEEEECCTTT
T ss_pred hCC-EEEEeccccc
Confidence 555 9999999653
No 84
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.22 E-value=0.0055 Score=57.83 Aligned_cols=156 Identities=14% Similarity=-0.026 Sum_probs=97.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHH-HhCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKR-AVDG 290 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~ 290 (444)
.+..++|+.|.||++.+..+.....- . .|+....+.+....++.++. ..+.. -+-+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~l~---------------------~~~~~~plf~ 75 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAA-Q-GFEEHHTFSIDPNTDWNAIF---------------------SLCQAMSLFA 75 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHH-H-TCCEEEEEECCTTCCHHHHH---------------------HHHHHHHHCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHh-C-CCCeeEEEEecCCCCHHHHH---------------------HHhcCcCCcc
Confidence 68999999999999999988775321 1 33322222233333333332 22221 1245
Q ss_pred ceEEEEEeCCCC-CChhcHHHhhcccCCCCCCcEEEEecCC-------hHHHhhc-CCCCcccCCCCChHhHHHHHHHhh
Q 047559 291 KKLLLVLDDVWN-EDYCLWEDLKAPFLAAAPNSKIIVTTRH-------AHVAATM-EPIQQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 291 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTTr~-------~~va~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 361 (444)
++-++|+|+++. .+...++.+...+.....++.+|++|.. ..+...+ ....+++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 667888999977 5556778888887766667777776643 2343332 334678889999999888777765
Q ss_pred ccCCCCCccchHHHHHHHHHHHcCCChHHHHHH
Q 047559 362 FVGQDITAQQISDLFREKVVGKCGGLPLAAKTL 394 (444)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 394 (444)
-..+-. ...+....+++.++|.+..+...
T Consensus 156 ~~~g~~----i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE----LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE----ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC----CCHHHHHHHHHHhchHHHHHHHH
Confidence 322111 11234566888899988877654
No 85
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.19 E-value=0.003 Score=57.68 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=65.9
Q ss_pred EEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHh-CCce
Q 047559 214 IPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAV-DGKK 292 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr 292 (444)
+.|+|++|+||||||+.+..... . ..+.++.+.-.+. . ..........+.+.. ...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~-----~-~~i~i~g~~l~~~---------------~-~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG-----L-NFISVKGPELLNM---------------Y-VGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT-----C-EEEEEETTTTCSS---------------T-THHHHHHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcC-----C-CEEEEEcHHHHhh---------------h-hhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987632 1 2344443321110 0 000011111122221 3457
Q ss_pred EEEEEeCCCCCCh-----------hcHHHhhcccCCC--CCCcEEEEecCChHHHh--hcC---CCCcccCCCCChHhHH
Q 047559 293 LLLVLDDVWNEDY-----------CLWEDLKAPFLAA--APNSKIIVTTRHAHVAA--TME---PIQQYNLQCLSDEDCW 354 (444)
Q Consensus 293 ~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~iivTTr~~~va~--~~~---~~~~~~l~~L~~~~~~ 354 (444)
.++++|++..... .....+...+... ....-++.+|..+.+.. ... -...+.+...+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 8999999965210 0111222222221 22344555666554321 111 1245778888888888
Q ss_pred HHHHHhh
Q 047559 355 SLFMMHA 361 (444)
Q Consensus 355 ~lf~~~~ 361 (444)
++|....
T Consensus 185 ~il~~~~ 191 (274)
T 2x8a_A 185 AILKTIT 191 (274)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887654
No 86
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.18 E-value=0.0021 Score=61.63 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+.++|++|+|||++|+.+.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.04 E-value=0.0047 Score=65.27 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=82.4
Q ss_pred CcccccchhHHHHHHHHhc---C-C---CCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH
Q 047559 184 RAVFGRQQDKAKMLEMVLT---D-T---SSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV 256 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~---~-~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 256 (444)
..++|.+..++.|.+++.. . . .-.-.....|.|+|++|+||||||+.+..... . .| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~-~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A-FF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--C-EE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--C-cE---EEEEchH----
Confidence 4689999988888887643 0 0 00002235799999999999999999987631 1 22 3333211
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh------h-----cHHHhhcccCC--CCCCcE
Q 047559 257 LNISRALLESITFASCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDY------C-----LWEDLKAPFLA--AAPNSK 323 (444)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~-----~~~~l~~~l~~--~~~gs~ 323 (444)
+... ........+...++......+.++++|++...-. . ....+...+.. ...+..
T Consensus 274 ----------l~~~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ----------IMSK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HSSS-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ----------hhhh-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 1000 0001111122223333344578999999954211 0 11122222211 123445
Q ss_pred EEEecCChH-HHhhcCC---C-CcccCCCCChHhHHHHHHHhh
Q 047559 324 IIVTTRHAH-VAATMEP---I-QQYNLQCLSDEDCWSLFMMHA 361 (444)
Q Consensus 324 iivTTr~~~-va~~~~~---~-~~~~l~~L~~~~~~~lf~~~~ 361 (444)
+|.||.... +...+.. . ..+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666665532 2111111 1 346778888888888887654
No 88
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.01 E-value=0.0094 Score=59.06 Aligned_cols=175 Identities=14% Similarity=0.147 Sum_probs=89.1
Q ss_pred CcccccchhHHHHHHH---HhcCCC---CCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHH
Q 047559 184 RAVFGRQQDKAKMLEM---VLTDTS---SDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVL 257 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 257 (444)
.+++|.+..+.++.+. +..... -+..-.+-+.|+|++|+|||+||+.++.... . ..+.++.+.-...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~----~~i~i~g~~~~~~- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V----PFITASGSDFVEM- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C----CEEEEEGGGGTSS-
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--C----CEEEEehhHHHHh-
Confidence 4588988766666544 322110 0001123489999999999999999997642 1 2233443321100
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHhC----CceEEEEEeCCCCCCh----------hc----HHHhhcccCCC-
Q 047559 258 NISRALLESITFASCDLKALNEVQVQIKRAVD----GKKLLLVLDDVWNEDY----------CL----WEDLKAPFLAA- 318 (444)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~~----------~~----~~~l~~~l~~~- 318 (444)
........+...++ ..+.++++|+++.... .. ...+...+...
T Consensus 104 ------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 104 ------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00111122333332 2357999999954210 11 12233333221
Q ss_pred -CCCcEEEEecCChHHHh--hcCC---CCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHcCCCh
Q 047559 319 -APNSKIIVTTRHAHVAA--TMEP---IQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKCGGLP 388 (444)
Q Consensus 319 -~~gs~iivTTr~~~va~--~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (444)
..+..|+.||..+.... ...+ ...+.+...+.++-.+++..++-. .....+..+ ..|+..+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~-~~l~~dv~l----~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDVDL----ALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS-SCCCCSSTT----HHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc-CCCChHHHH----HHHHHhcCCCC
Confidence 23445666666665421 1111 135788888888888888766422 111111222 34777777765
No 89
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.98 E-value=0.0042 Score=52.00 Aligned_cols=20 Identities=45% Similarity=0.713 Sum_probs=18.9
Q ss_pred eEEEEEecCCChHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREV 231 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v 231 (444)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 90
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.97 E-value=0.0021 Score=60.85 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=32.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|.+..+..+...+.... ..-+.|+|++|+|||+||+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHhC
Confidence 358998876655544443221 1248999999999999999998753
No 91
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.92 E-value=0.00058 Score=60.19 Aligned_cols=110 Identities=14% Similarity=-0.011 Sum_probs=60.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC--CcccHHHHHHHHHHHhC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC--DLKALNEVQVQIKRAVD 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~ 289 (444)
.++.|.|..|+||||++..+..+....+ . .++.++...+.. ....+.+.++.... ......++...+.+.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g--~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD--V-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT--C-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC--C-EEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 7999999999999999988877653322 2 223333222111 11123333332211 11223344445554444
Q ss_pred CceE-EEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCC
Q 047559 290 GKKL-LLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRH 330 (444)
Q Consensus 290 ~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~ 330 (444)
+.++ +||+|.+...+....+.+. .+.+ .|..||+|.+.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 4444 9999999765444444443 3333 27889999983
No 92
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.86 E-value=0.0034 Score=59.29 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=54.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHHH
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQIK 285 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 285 (444)
-.++.|.|++|+|||||+.++....... -..++|++....++.. .++.++.... ...+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3799999999999999999998764322 2346788877666654 3344433211 2334555555555
Q ss_pred HHhC-CceEEEEEeCCCC
Q 047559 286 RAVD-GKKLLLVLDDVWN 302 (444)
Q Consensus 286 ~~l~-~kr~LlVlDdv~~ 302 (444)
..+. .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5553 4556899999854
No 93
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.86 E-value=0.0025 Score=56.28 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=60.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-------------------
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC------------------- 272 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~------------------- 272 (444)
.++.|+|++|+|||||++.+........ ..+.|++... ...++...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 6899999999999999999986532211 2345655433 3444433332 2221100
Q ss_pred ----CcccHHHHHHHHHHHhC---CceEEEEEeCCCCC---ChhcHHHhhcccCC--CCCCcEEEEecCCh
Q 047559 273 ----DLKALNEVQVQIKRAVD---GKKLLLVLDDVWNE---DYCLWEDLKAPFLA--AAPNSKIIVTTRHA 331 (444)
Q Consensus 273 ----~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTTr~~ 331 (444)
...+..++...+...+. -+..+||+|.+... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134455555554442 22349999998632 22222333332221 23477888888765
No 94
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.79 E-value=0.0057 Score=56.38 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=54.3
Q ss_pred EEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHH-HHHHHH
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEV-QVQIKR 286 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~-~~~l~~ 286 (444)
++-|.|++|+|||||+.++........ .-..++|++....++.. .++.++.... ...+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 789999999999999988876543221 12467899888777753 2455554322 12344444 333333
Q ss_pred H--h-CCceEEEEEeCCCCC
Q 047559 287 A--V-DGKKLLLVLDDVWNE 303 (444)
Q Consensus 287 ~--l-~~kr~LlVlDdv~~~ 303 (444)
. + .++.-|||+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 2 3 456789999999553
No 95
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.75 E-value=0.012 Score=55.57 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=56.2
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEEEEeCCCCCHHHHHHHHHHHhccCC------------CCc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAWVCVSDDFDVLNISRALLESITFAS------------CDL 274 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~------------~~~ 274 (444)
.-.++.|+|.+|+||||||..+........ +.-..++|++....++...+.. ++..++... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 347999999999999999999876532210 0124678999888777666543 333333211 111
Q ss_pred ccHHHHHHHHHHHhC---CceEEEEEeCCCC
Q 047559 275 KALNEVQVQIKRAVD---GKKLLLVLDDVWN 302 (444)
Q Consensus 275 ~~~~~~~~~l~~~l~---~kr~LlVlDdv~~ 302 (444)
....++...+...+. .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 222233444555553 4566999999843
No 96
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.72 E-value=0.0077 Score=53.49 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=52.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEEEEeCCCCCHHHHHHHHHHHhccCC---------CCcccHH-
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAWVCVSDDFDVLNISRALLESITFAS---------CDLKALN- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~---------~~~~~~~- 278 (444)
.++.|+|++|+|||||+..+........ +.-..++|++....+....+. .++..++... ....+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 6999999999999999999886421110 013467888877655554432 3333333211 0011122
Q ss_pred --HHHHHHHHHhC-CceEEEEEeCCCC
Q 047559 279 --EVQVQIKRAVD-GKKLLLVLDDVWN 302 (444)
Q Consensus 279 --~~~~~l~~~l~-~kr~LlVlDdv~~ 302 (444)
.....+.+.+. .+.-+||||++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22333445553 4677999999854
No 97
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.69 E-value=0.0057 Score=58.15 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=54.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQIKR 286 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 286 (444)
.++.|.|.+|+||||||.++...... .-..++|++....++.. ..+.++.... ...+.+++...+..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 68999999999999999988765422 22367899888766643 1333332211 22345666666666
Q ss_pred HhC-CceEEEEEeCCCC
Q 047559 287 AVD-GKKLLLVLDDVWN 302 (444)
Q Consensus 287 ~l~-~kr~LlVlDdv~~ 302 (444)
.++ ...-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 654 3455999999844
No 98
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.66 E-value=0.029 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|.|||||.+.+..-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998653
No 99
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.65 E-value=0.0067 Score=56.80 Aligned_cols=90 Identities=14% Similarity=0.195 Sum_probs=55.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcccccc---CCcceeEEEEeCCCCCHHHHHHHHHHHhccCC---------CCcccHH-
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVED---SKFDVKAWVCVSDDFDVLNISRALLESITFAS---------CDLKALN- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~---------~~~~~~~- 278 (444)
.++.|+|.+|+|||+||.++........ +.-..++|++....++..++.. ++..++... ....+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 6999999999999999999876532110 0134678998888777666543 344443211 0111222
Q ss_pred --HHHHHHHHHhC--CceEEEEEeCCCC
Q 047559 279 --EVQVQIKRAVD--GKKLLLVLDDVWN 302 (444)
Q Consensus 279 --~~~~~l~~~l~--~kr~LlVlDdv~~ 302 (444)
++...+...+. .+.-+||+|.+..
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 34445555553 4667999999843
No 100
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.65 E-value=0.0024 Score=60.40 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=53.1
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC-HHHHHHHHHHHhccCCCC
Q 047559 195 KMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD-VLNISRALLESITFASCD 273 (444)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~ 273 (444)
.+++.+..-.. -..++|+|.+|+|||||++.+.+........+.+ +++-++.... +.++.+.+-..+-....+
T Consensus 163 raID~~~pi~r-----GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~~~~~~~~~vV~atad 236 (422)
T 3ice_A 163 RVLDLASPIGR-----GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTEMQRLVKGEVVASTFD 236 (422)
T ss_dssp HHHHHHSCCBT-----TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHHHHTTCSSEEEEECTT
T ss_pred eeeeeeeeecC-----CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHHHHHHhCeEEEEeCCC
Confidence 44555544322 2589999999999999999887653222112333 4566775432 222222210001111111
Q ss_pred cccHHH-----HHHHHHHHh--CCceEEEEEeCCC
Q 047559 274 LKALNE-----VQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 274 ~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
.+.... ..-.+.+++ +++.+||++||+-
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 111111 111233444 6899999999983
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.63 E-value=0.0022 Score=55.55 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=33.7
Q ss_pred cchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 189 RQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
|++.++.+.+.+..... ....+|+|.|..|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45567778887765422 344799999999999999999987643
No 102
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.60 E-value=0.0025 Score=54.58 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=61.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC---CCCHHHHHHHHHHHhccC------CCCc-------c
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD---DFDVLNISRALLESITFA------SCDL-------K 275 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~il~~l~~~------~~~~-------~ 275 (444)
..|.|++-.|.||||+|--..-+.- . +=-.+.++.... ......++..+ .+... .... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--g-~G~rV~~vQF~Kg~~~~gE~~~l~~L--~v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--G-HGKNVGVVQFIKGTWPNGERNLLEPH--GVEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--H-TTCCEEEEESSCCSSCCHHHHHHGGG--TCEEEECCTTCCCCGGGHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--H-CCCeEEEEEeeCCCCCccHHHHHHhC--CcEEEEcccccccCCCCcHHHHH
Confidence 4566777777999999977665432 1 222333443332 22333333333 01000 0011 1
Q ss_pred cHHHHHHHHHHHhCCceE-EEEEeCCCC---CChhcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 276 ALNEVQVQIKRAVDGKKL-LLVLDDVWN---EDYCLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 276 ~~~~~~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
........+.+.+.+.+| |||||++-. ......+.+...+.......-||+|+|...
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 112233445566655555 999999832 122345566666666666788999999753
No 103
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.58 E-value=0.0091 Score=55.81 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=55.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccc----------c-C-C-cceeEEEEeCCCCCHHHHHHHHHHHhccCC------
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVE----------D-S-K-FDVKAWVCVSDDFDVLNISRALLESITFAS------ 271 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----------~-~-~-f~~~~wv~vs~~~~~~~~~~~il~~l~~~~------ 271 (444)
-.++.|.|.+|+|||+||.++....... . + . -..++|++....++..++... +..++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhcC
Confidence 3799999999999999999987542111 0 0 0 046789998887777665533 34443221
Q ss_pred ---CCcccHH---HHHHHHHHHhC--CceEEEEEeCCC
Q 047559 272 ---CDLKALN---EVQVQIKRAVD--GKKLLLVLDDVW 301 (444)
Q Consensus 272 ---~~~~~~~---~~~~~l~~~l~--~kr~LlVlDdv~ 301 (444)
....+.+ ++...+...+. .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0111222 34445556554 456699999984
No 104
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.56 E-value=0.007 Score=57.22 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=53.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQIKR 286 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 286 (444)
.++.|.|.+|+||||||.++...... .-..++|++....++.. ..+.++.... ...+.++....+..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 69999999999999999998865322 22357888887766643 2333432211 12345555555555
Q ss_pred HhC-CceEEEEEeCCCCC
Q 047559 287 AVD-GKKLLLVLDDVWNE 303 (444)
Q Consensus 287 ~l~-~kr~LlVlDdv~~~ 303 (444)
... .+.-+||+|.+...
T Consensus 134 l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHTTTCCSEEEEECGGGC
T ss_pred HHhcCCCCEEEEcChHhh
Confidence 553 34569999998543
No 105
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.54 E-value=0.019 Score=50.99 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|+|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998653
No 106
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.44 E-value=0.03 Score=50.96 Aligned_cols=51 Identities=31% Similarity=0.405 Sum_probs=32.6
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS-------SDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|.+..+.++.+....-.. +-... +-+.|+|++|+|||||++.+....
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~-~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCcChHHHHHHHHHHHc
Confidence 4688887666655443321000 00011 238999999999999999998764
No 107
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.41 E-value=0.0058 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|.|.|++|+||+|.|+.+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998764
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.39 E-value=0.00055 Score=58.54 Aligned_cols=108 Identities=11% Similarity=0.007 Sum_probs=51.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC--CCCcccHHHHHHHHHHHhC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA--SCDLKALNEVQVQIKRAVD 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~--~~~~~~~~~~~~~l~~~l~ 289 (444)
.++.|+|+.|+||||++..+..+....+ .. +..+....+. ......+...++.. .....+.. .+.+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~-v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~ 74 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--KK-VAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPE----EMRKYIE 74 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--CE-EEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--Ce-EEEEeecccc--ccCcccEEecCCCceeeEEECCHH----HHHHHhc
Confidence 5889999999999999976665532221 22 2222221110 00000000000000 00001111 1222333
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA 331 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~ 331 (444)
++.-+|++|++...+.. |......+.+. |..||+|.+..
T Consensus 75 ~~~dvviIDE~Q~~~~~-~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPS-LFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TTEEEEEECCGGGSCTT-HHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCCEEEEECcccCCHH-HHHHHHHHHHC--CCCEEEEeecc
Confidence 45669999999776444 44433333332 77899888743
No 109
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.30 E-value=0.02 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999753
No 110
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.29 E-value=0.015 Score=52.07 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999754
No 111
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.27 E-value=0.011 Score=55.94 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=52.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQIKR 286 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 286 (444)
.++.|.|.+|+||||||.++....... -..++|++....++... ...++.... ...+.+++...+..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 699999999999999999988654322 23678898877666432 333332211 12234444444544
Q ss_pred Hh-CCceEEEEEeCCCC
Q 047559 287 AV-DGKKLLLVLDDVWN 302 (444)
Q Consensus 287 ~l-~~kr~LlVlDdv~~ 302 (444)
.. ..+.-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 43 24455999999854
No 112
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.24 E-value=0.014 Score=56.94 Aligned_cols=89 Identities=20% Similarity=0.262 Sum_probs=52.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC-HHHHHHHHHHHhc--------cCCCCcccHHH---
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD-VLNISRALLESIT--------FASCDLKALNE--- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~--- 279 (444)
..++|+|.+|+|||||++.+....... +.+.++++.++...+ ..+++..+...-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 468999999999999999988764322 334557777776543 3455544543200 11112221111
Q ss_pred -HHHHHHHHh---CCceEEEEEeCCCC
Q 047559 280 -VQVQIKRAV---DGKKLLLVLDDVWN 302 (444)
Q Consensus 280 -~~~~l~~~l---~~kr~LlVlDdv~~ 302 (444)
..-.+.+++ +++++||++||+..
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111344444 58899999999943
No 113
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.21 E-value=0.015 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..+++|+|++|+||||++..+.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999999886543
No 114
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.20 E-value=0.018 Score=53.51 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=32.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 186 VFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
++|....+..+...+..... .....+|+|.|+.|+|||||++.+..-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555555555544321 145679999999999999999998754
No 115
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.16 E-value=0.024 Score=53.61 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=51.5
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcccccc--CC-cceeEEEEeCCCCCHHHHHHHHHHHhccCC------------CCcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVED--SK-FDVKAWVCVSDDFDVLNISRALLESITFAS------------CDLK 275 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~-f~~~~wv~vs~~~~~~~~~~~il~~l~~~~------------~~~~ 275 (444)
-.++.|+|++|+|||||+..+........ +. -..++|++....+....+ ..+........ ....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 37999999999999999999886531111 00 124488887665443332 22333221110 0111
Q ss_pred cHHHHHHHHHHHhC------CceEEEEEeCCCC
Q 047559 276 ALNEVQVQIKRAVD------GKKLLLVLDDVWN 302 (444)
Q Consensus 276 ~~~~~~~~l~~~l~------~kr~LlVlDdv~~ 302 (444)
...++...+...+. .+.-+||+|.+-.
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 12233444455553 4677999999854
No 116
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.15 E-value=0.026 Score=51.77 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445799999999999999999887654
No 117
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.13 E-value=0.0027 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|.|+|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
No 118
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.06 E-value=0.0029 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.05 E-value=0.004 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|++|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 78999999999999999999875
No 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.05 E-value=0.005 Score=53.59 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+++|.+.+.... ..-.+++|+|+.|+|||||++.+....
T Consensus 8 ~~~~~~~~~~~~----~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 8 CQGVLERLDPRQ----PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHSCTTC----CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554321 344799999999999999999987654
No 121
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.03 E-value=0.0061 Score=55.98 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 192 DKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++++..++...... ....+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~~~-~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAV-ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCCCC-SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCC-CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444455444432222 44578999999999999999999864
No 122
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.01 E-value=0.023 Score=53.69 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=34.2
Q ss_pred HHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCC--CCCCcEEEEecCChHHHhh
Q 047559 281 QVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLA--AAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 281 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTTr~~~va~~ 336 (444)
.-.|.+.|..++=+|++|+.-+. |...-..+...+.. ...|..||++|.+-..+..
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 34566777788889999998442 33222333333322 1347788888988776644
No 123
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.00 E-value=0.016 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 68999999999999999998753
No 124
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.00 E-value=0.033 Score=54.16 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=55.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC-------------CCCcccH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFA-------------SCDLKAL 277 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------------~~~~~~~ 277 (444)
.-++|+|.+|+|||+|+..+.+... +. +.+.++++-++... ...++++.+...-... ..+.+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~-~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~ 231 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVA-KA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPG 231 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT-TT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhH-hh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHH
Confidence 5789999999999999999887631 22 45677888888764 4556666666542111 1111111
Q ss_pred H-----HHHHHHHHHh---CCceEEEEEeCCC
Q 047559 278 N-----EVQVQIKRAV---DGKKLLLVLDDVW 301 (444)
Q Consensus 278 ~-----~~~~~l~~~l---~~kr~LlVlDdv~ 301 (444)
. ...-.+.+++ +++.+||++||+-
T Consensus 232 ~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 232 ARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1 1122344555 4789999999983
No 125
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.99 E-value=0.0039 Score=52.61 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 126
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.97 E-value=0.088 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|+|||||.+.+..-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998653
No 127
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.95 E-value=0.011 Score=58.23 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..+.|.|.+|+|||+++..+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999998887643
No 128
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.93 E-value=0.036 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999999753
No 129
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.90 E-value=0.004 Score=52.83 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999865
No 130
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.88 E-value=0.0044 Score=53.51 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|+|++|+||||+++.+....
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998753
No 131
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.85 E-value=0.037 Score=53.17 Aligned_cols=90 Identities=10% Similarity=0.137 Sum_probs=50.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccc---cCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC---------CcccH--
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVE---DSKFDVKAWVCVSDDFDVLNISRALLESITFASC---------DLKAL-- 277 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~-- 277 (444)
.++.|+|++|+|||||+..++-..... .+.-..++|++....+....+ ..+.+.++.... ...+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHH
Confidence 699999999999999999765321111 002345788887766655443 234444432110 01111
Q ss_pred -HHHHHHHHHHh-CCceEEEEEeCCCC
Q 047559 278 -NEVQVQIKRAV-DGKKLLLVLDDVWN 302 (444)
Q Consensus 278 -~~~~~~l~~~l-~~kr~LlVlDdv~~ 302 (444)
......+...+ ..+.-+||+|.+-.
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22223333333 34567999999844
No 132
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.85 E-value=0.033 Score=51.79 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=34.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLES 266 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~ 266 (444)
.++.|.|.+|+||||||..+....... . ..++|++.- .+..++...++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~--g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDN--D-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTT--T-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc--C-CeEEEEECC--CCHHHHHHHHHHH
Confidence 689999999999999999988654322 2 466777654 4455555555543
No 133
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.84 E-value=0.094 Score=50.85 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.2
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...+|.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 35899999999999999998887543
No 134
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.83 E-value=0.0083 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+.++|.|.|++|+||||.|+.+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455899999999999999999998764
No 135
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.81 E-value=0.0058 Score=52.75 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
.+|.|+|++|+|||||++.+.....
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999987653
No 136
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.81 E-value=0.0035 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998765
No 137
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.78 E-value=0.0039 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|+|+|++|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 138
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.77 E-value=0.008 Score=54.07 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+.++..+...... .....+|.|+|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 15 LARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444445543332 244579999999999999999999865
No 139
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.76 E-value=0.005 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+.|.|+|++|+||||+|+.+....
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998753
No 140
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.75 E-value=0.0057 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+++.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998764
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.74 E-value=0.0064 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3789999999999999999998753
No 142
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.69 E-value=0.0045 Score=58.50 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCH-HHHHHHHHHHhccCCC
Q 047559 194 AKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDV-LNISRALLESITFASC 272 (444)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~-~~~~~~il~~l~~~~~ 272 (444)
-.+++.|..-.. -.-+.|+|.+|+|||+|+..+.+........+.+ +++-++..... .++.+.+...+-....
T Consensus 163 iraID~l~Pigr-----GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~~EV~d~~~~~~G~VV~ata 236 (427)
T 3l0o_A 163 TRLIDLFAPIGK-----GQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERPEEVTDIRESTNAIVIAAPF 236 (427)
T ss_dssp HHHHHHHSCCBT-----TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCHHHHSSSSSSCCSEEEECCT
T ss_pred chhhhhcccccC-----CceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCcchHHHHHHHhCCeEEEECC
Confidence 456666654322 2578999999999999999988764322112333 45666654321 1111111101111111
Q ss_pred CcccHHH-----HHHHHHHHh--CCceEEEEEeCCC
Q 047559 273 DLKALNE-----VQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 273 ~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
+.+.... ..-.+.+++ +++.+||++||+-
T Consensus 237 dep~~~r~~~a~~altiAEyfrd~G~dVLil~DslT 272 (427)
T 3l0o_A 237 DMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLT 272 (427)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccch
Confidence 1111111 112234444 6899999999993
No 143
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.69 E-value=0.068 Score=50.02 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=35.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLES 266 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~ 266 (444)
.++.|.|.+|+||||||..++...... -..++|++. ..+..++...++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 689999999999999999988764322 235566654 44566666666543
No 144
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.67 E-value=0.0091 Score=56.85 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=36.0
Q ss_pred cccccchhHHHHHHHHhc-------CC--CCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 185 AVFGRQQDKAKMLEMVLT-------DT--SSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++|.+..++.+...+.. .. .........+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 478988888888777621 00 0000133578999999999999999998764
No 145
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.66 E-value=0.022 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||.+.+..-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 58999999999999999999753
No 146
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.65 E-value=0.04 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 58999999999999999999754
No 147
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.63 E-value=0.044 Score=53.59 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=56.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhccC--------------CCCccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRALLESITFA--------------SCDLKA 276 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~il~~l~~~--------------~~~~~~ 276 (444)
.-++|+|.+|+|||+|+..+.++.. +. +.+.++++-++... ...+++.++...=... ..+.+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a-~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIA-KA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTT-TT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHH-hh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 5689999999999999999887631 22 55788888888765 4556666665531111 011111
Q ss_pred -----HHHHHHHHHHHhC---CceEEEEEeCCC
Q 047559 277 -----LNEVQVQIKRAVD---GKKLLLVLDDVW 301 (444)
Q Consensus 277 -----~~~~~~~l~~~l~---~kr~LlVlDdv~ 301 (444)
.....-.+.+++. ++.+||++||+-
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1122334556664 579999999983
No 148
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.63 E-value=0.034 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999753
No 149
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.61 E-value=0.0069 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.5
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-.++.|+|++|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 368999999999999999998764
No 150
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.60 E-value=0.0064 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.727 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+++|+|+.|+|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 6999999999999999997553
No 151
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.59 E-value=0.0066 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||++.+...
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999865
No 152
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.59 E-value=0.0071 Score=52.61 Aligned_cols=24 Identities=38% Similarity=0.636 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|+|||||++.+....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999998763
No 153
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.58 E-value=0.0049 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+|+.+....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
No 154
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.57 E-value=0.0064 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998754
No 155
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.53 E-value=0.039 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999999753
No 156
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.53 E-value=0.0068 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.++.|.|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999865
No 157
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.52 E-value=0.0076 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 158
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.52 E-value=0.0076 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 159
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.50 E-value=0.0071 Score=50.47 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
....+|.|.|+.|+||||+++.+....
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998753
No 160
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.47 E-value=0.0088 Score=51.97 Aligned_cols=24 Identities=42% Similarity=0.433 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+++|+|+.|+|||||++.+...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999999998765
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.44 E-value=0.0063 Score=51.46 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+++.+....
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998653
No 162
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.44 E-value=0.0078 Score=50.96 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988654
No 163
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.42 E-value=0.0063 Score=51.89 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998653
No 164
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.42 E-value=0.0087 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999997653
No 165
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.41 E-value=0.0064 Score=51.16 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|.|.|++|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998753
No 166
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.41 E-value=0.0068 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+|.|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 167
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.39 E-value=0.0082 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998753
No 168
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.37 E-value=0.011 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.2
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...+|.|.|++|+||||+++.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999865
No 169
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.36 E-value=0.0095 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|.|.|++|+||||+|+.+...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999865
No 170
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.36 E-value=0.011 Score=51.25 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+|+|+|++|+||||+++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999999764
No 171
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.36 E-value=0.011 Score=50.95 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
....+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34579999999999999999999864
No 172
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.35 E-value=0.0095 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...|.|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999875
No 173
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.34 E-value=0.0096 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998765
No 174
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.33 E-value=0.0099 Score=53.40 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344799999999999999999997753
No 175
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.30 E-value=0.0073 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.631 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999998764
No 176
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.29 E-value=0.081 Score=48.82 Aligned_cols=26 Identities=35% Similarity=0.361 Sum_probs=22.7
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...++.|+|++|+||||++..+....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34799999999999999999988664
No 177
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.28 E-value=0.0097 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 178
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.28 E-value=0.0092 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|+|+|+.|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.27 E-value=0.01 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..|.|.|++|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999865
No 180
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.24 E-value=0.09 Score=46.40 Aligned_cols=91 Identities=13% Similarity=0.229 Sum_probs=47.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCc-ceeEEEEeCCCCCHHHHHHHHHHHhccCCC---------------C--
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKF-DVKAWVCVSDDFDVLNISRALLESITFASC---------------D-- 273 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------------~-- 273 (444)
+.+.|.|+.|+||||+...+.-+........ ...+.+.........++...+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 5899999999999987665543221111021 234444444433344444555443332110 0
Q ss_pred ---cccHHHHHHHHHHHhCCceEEEEEeCCCCC
Q 047559 274 ---LKALNEVQVQIKRAVDGKKLLLVLDDVWNE 303 (444)
Q Consensus 274 ---~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 303 (444)
..+.+.+...+...+.+- -+||+|+++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 013345555555544333 37899999763
No 181
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.21 E-value=0.011 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998764
No 182
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.21 E-value=0.01 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.585 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
++++|+|+.|+|||||++.+...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 68999999999999999999865
No 183
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.21 E-value=0.012 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+|+.+....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
No 184
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.20 E-value=0.039 Score=55.78 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=54.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHH-HHhC-
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIK-RAVD- 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~- 289 (444)
+++.|.|.+|+||||++..+....... ...+.+..........+. +.++. ...++..+..... .+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~----g~~Vl~~ApT~~Aa~~L~----e~~~~---~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL----GLEVGLCAPTGKAARRLG----EVTGR---TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHH----HHHTS---CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc----CCeEEEecCcHHHHHHhH----hhhcc---cHHHHHHHHcCCcchhhhh
Confidence 589999999999999999988654322 133445444332222222 11111 1112211110000 0000
Q ss_pred ----CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEec
Q 047559 290 ----GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTT 328 (444)
Q Consensus 290 ----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 328 (444)
.+--+||+|++...+...+..+...++ .+.++|+.-
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 012389999997766666666666554 456666644
No 185
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.20 E-value=0.0076 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998753
No 186
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.19 E-value=0.011 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 187
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.19 E-value=0.011 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+|+.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
No 188
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.18 E-value=0.012 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 189
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.17 E-value=0.013 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..+|.|.|++|+||||+++.+.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999987653
No 190
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.15 E-value=0.012 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|.|.|++|+||||+|+.+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 191
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.14 E-value=0.0087 Score=50.06 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998753
No 192
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.13 E-value=0.1 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998754
No 193
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.13 E-value=0.012 Score=55.80 Aligned_cols=112 Identities=8% Similarity=0.060 Sum_probs=60.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.+++|+|+.|+|||||.+.+....... ....+ +++.++.... .......+. ..............|...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~---~~~~i-~t~ed~~e~~--~~~~~~~v~-q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT---KYHHI-LTIEDPIEFV--HESKKCLVN-QREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH---CCCEE-EEEESSCCSC--CCCSSSEEE-EEEBTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC---CCcEE-EEccCcHHhh--hhcccccee-eeeeccccCCHHHHHHHHhhhC
Confidence 599999999999999999887643211 11122 2222221100 000000000 0000001122344677888888
Q ss_pred eEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHh
Q 047559 292 KLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~ 335 (444)
+=+|++|++.+ ...+..+.... ..|..||+||...+.+.
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 88999999964 34455443332 23667888888766554
No 194
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.12 E-value=0.011 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|++|+|||||++.+...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999854
No 195
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.08 E-value=0.011 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 69999999999999999998764
No 196
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.05 E-value=0.079 Score=52.00 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=29.1
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD 255 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 255 (444)
...+++|+|..|+|||||++.+....... ...+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~----~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ----GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc----CCeEEEecCcccc
Confidence 34799999999999999999988654321 2445554344443
No 197
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.03 E-value=0.025 Score=53.01 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=30.5
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 188 GRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+-+.-.+.+++.+...-.. +....|.|+|++|+||||+++.+....
T Consensus 3 ~~~~L~~~il~~l~~~i~~--g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIED--NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTT--CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcc--CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3344455566655322111 344679999999999999999887653
No 198
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.03 E-value=0.0077 Score=50.93 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=17.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999997653
No 199
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.00 E-value=0.013 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 200
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.97 E-value=0.015 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.6
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...+++|+|+.|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34799999999999999999988653
No 201
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.96 E-value=0.11 Score=50.82 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=35.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLES 266 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~ 266 (444)
.++.|.|.+|+||||||..++...... .-..++|++.. .+..++...++..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 689999999999999999988764322 12346676654 4455666665543
No 202
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.94 E-value=0.014 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 203
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.93 E-value=0.015 Score=50.45 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
.+|.|.|+.|+||||+++.+.+...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 204
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.18 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 69999999999999999998754
No 205
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.91 E-value=0.016 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|+|.|+.|+|||||++.+...
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999999998764
No 206
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.90 E-value=0.016 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|.|||||++.+..-.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 699999999999999999998653
No 207
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.89 E-value=0.011 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 208
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.88 E-value=0.0082 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997654
No 209
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.86 E-value=0.015 Score=50.49 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.8
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..+|.|.|+.|+||||+++.+.....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999987643
No 210
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.86 E-value=0.015 Score=48.53 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.8
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..++.|+|..|+|||||+..+.....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 47899999999999999999987643
No 211
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.86 E-value=0.047 Score=52.82 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=53.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccC-CcceeEEEEeCCCC-CHHHHHHHHHHH--hcc-----CCCCcccHH----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDS-KFDVKAWVCVSDDF-DVLNISRALLES--ITF-----ASCDLKALN---- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~-~~~~~~~~il~~--l~~-----~~~~~~~~~---- 278 (444)
.-++|+|.+|+|||+|+..+.+....... .--.++++-++... .+.++++.+... +.. ...+.+...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 35789999999999999999887543110 11156777777653 455666665442 110 111111111
Q ss_pred -HHHHHHHHHh---CCceEEEEEeCCC
Q 047559 279 -EVQVQIKRAV---DGKKLLLVLDDVW 301 (444)
Q Consensus 279 -~~~~~l~~~l---~~kr~LlVlDdv~ 301 (444)
...-.+.+++ .++.+||++||+-
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1122355665 3789999999983
No 212
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.85 E-value=0.022 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...|.|.|++|+||||+|+.+.+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998653
No 213
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.83 E-value=0.015 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..|.|.|++|+||||+|+.+...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 214
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.81 E-value=0.12 Score=50.67 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=51.6
Q ss_pred eEEEEEecCCChHHHHH-HHHhhccccccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhc-------cCCCCccc-HHH-
Q 047559 212 AVIPIVGMAGVGKTTLA-REVYNDRAVEDSKFD-VKAWVCVSDDF-DVLNISRALLESIT-------FASCDLKA-LNE- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~il~~l~-------~~~~~~~~-~~~- 279 (444)
.-++|+|.+|+|||+|| ..+.+.. ..+ .++++-++... .+.++.+.+...=. ....+.+. ...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 46899999999999995 5777763 345 35777777654 44556666554211 01111111 111
Q ss_pred ---HHHHHHHHh--CCceEEEEEeCCC
Q 047559 280 ---VQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 280 ---~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
..-.+.+++ +++.+||++||+-
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 122344555 6789999999983
No 215
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.81 E-value=0.016 Score=50.87 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=22.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
-.+++|+|+.|+|||||.+.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3699999999999999999988653
No 216
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.80 E-value=0.16 Score=59.97 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC--
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA-- 270 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~-- 270 (444)
...+++.+.... +-+.++|++|+|||++|+.+.... .--..+.++.+...+...+...+-..+...
T Consensus 1256 ~~~ll~~~l~~~-------~~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~ 1323 (2695)
T 4akg_A 1256 HEKIFYDLLNSK-------RGIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSALHRHTNYVTT 1323 (2695)
T ss_dssp HHHHHHHHHHHT-------CEEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEE
T ss_pred HHHHHHHHHHCC-------CeEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHHHHHhhhccc
Q ss_pred ----------CCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh------cHHHhhcccCCCC------------CCc
Q 047559 271 ----------SCDLKALNEVQVQIKRAVDGKKLLLVLDDVWNEDYC------LWEDLKAPFLAAA------------PNS 322 (444)
Q Consensus 271 ----------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs 322 (444)
. +++.+|.+||+.-...+ ..+.++..+..++ .+.
T Consensus 1324 ~~g~~~~P~~~------------------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i 1385 (2695)
T 4akg_A 1324 SKGLTLLPKSD------------------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERI 1385 (2695)
T ss_dssp TTTEEEEEBSS------------------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESE
T ss_pred cCCccccCCCC------------------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCE
Q ss_pred EEEEecCChH-------HHhhcCCCCcccCCCCChHhHHHHHHHhhccCCCCCccchHHHHHHHHHHHc
Q 047559 323 KIIVTTRHAH-------VAATMEPIQQYNLQCLSDEDCWSLFMMHAFVGQDITAQQISDLFREKVVGKC 384 (444)
Q Consensus 323 ~iivTTr~~~-------va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~ 384 (444)
.+|.++.... -....+...++.+...+.++-..+|.....+--. ..+.+..++..|+...
T Consensus 1386 ~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1386 HIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp EEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHHH
T ss_pred EEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHH
No 217
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.79 E-value=0.015 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|+|+|+.|+||||+++.+...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999854
No 218
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.79 E-value=0.13 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 79999999999999999998764
No 219
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.77 E-value=0.02 Score=49.08 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..-.+|+|.|+.|+||||+++.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 44589999999999999999998764
No 220
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.75 E-value=0.093 Score=51.43 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=33.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
.++.|.|.+|+|||||+..+....... .-..++|++... +..++...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHH
Confidence 689999999999999999988764322 112566766433 3445555443
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.75 E-value=0.15 Score=47.52 Aligned_cols=25 Identities=40% Similarity=0.371 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+++|+|+.|+||||+++.+....
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999988654
No 222
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.74 E-value=0.038 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|++|+||||+++.+....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998653
No 223
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.73 E-value=0.016 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..|+|.|+.|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998763
No 224
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.73 E-value=0.015 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997653
No 225
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.71 E-value=0.014 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..|.|.|++|+||||+++.+....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
No 226
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.70 E-value=0.017 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 227
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.69 E-value=0.025 Score=48.58 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+..+..++..- ++...+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555555431 333579999999999999998888763
No 228
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.69 E-value=0.12 Score=49.88 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++.|+|.+|+||||++..+....
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999998887553
No 229
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.66 E-value=0.021 Score=48.15 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|+.|+||||+++.+....
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998753
No 230
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.66 E-value=0.073 Score=52.08 Aligned_cols=85 Identities=25% Similarity=0.283 Sum_probs=51.2
Q ss_pred eEEEEEecCCChHHHHH-HHHhhccccccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhcc-------CCCCcccHHH--
Q 047559 212 AVIPIVGMAGVGKTTLA-REVYNDRAVEDSKFD-VKAWVCVSDDF-DVLNISRALLESITF-------ASCDLKALNE-- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~-- 279 (444)
.-++|+|.+|+|||+|| ..+.+.. ..+ .++++-++... .+.++.+.+...=.. ...+.+....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 46899999999999995 5777763 344 35777777654 445555555542111 1111111111
Q ss_pred ---HHHHHHHHh--CCceEEEEEeCCC
Q 047559 280 ---VQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 280 ---~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
..-.+.+++ +++.+||++||+-
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 112344555 6789999999983
No 231
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.66 E-value=0.019 Score=50.39 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=30.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccc--cC-CcceeEEEEeCCCCCH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVE--DS-KFDVKAWVCVSDDFDV 256 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~-~f~~~~wv~vs~~~~~ 256 (444)
.+++|+|++|+|||||++.+....... .. .....+|+.....+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 799999999999999999997632111 10 1345778776554443
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.64 E-value=0.016 Score=52.00 Aligned_cols=22 Identities=50% Similarity=0.732 Sum_probs=20.4
Q ss_pred EEEEecCCChHHHHHHHHhhcc
Q 047559 214 IPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+.|+|++|+|||||++.++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998764
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.63 E-value=0.021 Score=49.63 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|+.|+||||+++.+....
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999998754
No 234
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.63 E-value=0.14 Score=50.91 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=34.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLE 265 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~ 265 (444)
.++.|.|.+|+||||||.++..+.... +-..++|++... +..++...++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccC--CHHHHHHHHHH
Confidence 689999999999999999988764322 123566776543 45566655543
No 235
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.63 E-value=0.018 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998753
No 236
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.62 E-value=0.013 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
.+++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999886643
No 237
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.61 E-value=0.032 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.1
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998876
No 238
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.61 E-value=0.063 Score=61.31 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=54.3
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHH
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQI 284 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 284 (444)
.-+++.|+|++|+|||+||.++...... +=..++|+++...++... ++.++.... .....++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3479999999999999999998776432 223567888877766655 333331110 122234455555
Q ss_pred HHHh-CCceEEEEEeCCC
Q 047559 285 KRAV-DGKKLLLVLDDVW 301 (444)
Q Consensus 285 ~~~l-~~kr~LlVlDdv~ 301 (444)
.... ..+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5554 3566799999994
No 239
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.59 E-value=0.018 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 240
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.56 E-value=0.019 Score=51.10 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999753
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.55 E-value=0.02 Score=52.96 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+++|+|++|+|||||++.+..-.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3699999999999999999987543
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.55 E-value=0.11 Score=50.28 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+|.++|++|+||||++..+....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999998887543
No 243
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.55 E-value=0.024 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=21.0
Q ss_pred CceEEEEEecCCChHHHHHHHHh
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVY 232 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~ 232 (444)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34799999999999999999987
No 244
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.52 E-value=0.16 Score=51.51 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=64.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCC--cc-eeEEEEeC----CCCCHHHHHH--------------HHHHHhccC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSK--FD-VKAWVCVS----DDFDVLNISR--------------ALLESITFA 270 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~-~~~wv~vs----~~~~~~~~~~--------------~il~~l~~~ 270 (444)
.+++|+|+.|+|||||++.+..-.....+. +. .+.++.-. ...++.+.+. .++..++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 589999999999999999998753221111 11 12333211 1123333322 222233222
Q ss_pred CC-----CcccH-HHHHHHHHHHhCCceEEEEEeCCCC-CChhcHHHhhcccCC--CCCCcEEEEecCChHHHhh
Q 047559 271 SC-----DLKAL-NEVQVQIKRAVDGKKLLLVLDDVWN-EDYCLWEDLKAPFLA--AAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 271 ~~-----~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~iivTTr~~~va~~ 336 (444)
.. ..-+- +...-.|...|...+=+|+||+--+ .|...-..+...+.. ...|..||++|.+...+..
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 11 11122 2233356667777788999999743 233322223333322 1235678888888666554
No 245
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.52 E-value=0.019 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+++|+|++|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999998874
No 246
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.12 Score=52.43 Aligned_cols=125 Identities=11% Similarity=0.047 Sum_probs=63.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCC-c-c-eeEEEEeC--C--CCCHHH--------------HHHHHHHHhccC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSK-F-D-VKAWVCVS--D--DFDVLN--------------ISRALLESITFA 270 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f-~-~~~wv~vs--~--~~~~~~--------------~~~~il~~l~~~ 270 (444)
.+++|+|+.|+|||||++.+..-.....+. . . ...++.-. . ..++.+ ....++..++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999998643221111 0 0 11222100 0 011222 222333333322
Q ss_pred CC-----Cccc-HHHHHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCC--CCCCcEEEEecCChHHHhh
Q 047559 271 SC-----DLKA-LNEVQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLA--AAPNSKIIVTTRHAHVAAT 336 (444)
Q Consensus 271 ~~-----~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTTr~~~va~~ 336 (444)
.. ..-+ -+...-.|...|..++=+|+||+--.. |...-..+...+.. ...|..||++|.+...+..
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 11 1122 223334567778788889999997432 32222222222222 1236678888887766654
No 247
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.032 Score=47.36 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33468899999999999999999865
No 248
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.49 E-value=0.069 Score=47.34 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=31.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRAL 263 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 263 (444)
.++.|.|.+|+|||+||.+++.+.... .-..+++++.. .+..++...+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESS--SCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeeccc--CCHHHHHHHH
Confidence 689999999999999998876442222 22345555543 3455555544
No 249
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.47 E-value=0.025 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.47 E-value=0.02 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998753
No 251
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.47 E-value=0.02 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998753
No 252
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.47 E-value=0.053 Score=52.46 Aligned_cols=89 Identities=10% Similarity=0.213 Sum_probs=52.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccc--------cCCcc-eeEEEEeCCCC-CHHHHHHHHHHH--hcc-----CCCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVE--------DSKFD-VKAWVCVSDDF-DVLNISRALLES--ITF-----ASCDL 274 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~~f~-~~~wv~vs~~~-~~~~~~~~il~~--l~~-----~~~~~ 274 (444)
.-++|+|.+|+|||+|+..+.+..... + +-+ .++++-++... .+.++...+... +.. ...+.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d-~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEK-EEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCST-TCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccC-CCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 467899999999999999998875431 1 122 56677777654 445555554432 110 11111
Q ss_pred ccHH-----HHHHHHHHHh---CCceEEEEEeCCC
Q 047559 275 KALN-----EVQVQIKRAV---DGKKLLLVLDDVW 301 (444)
Q Consensus 275 ~~~~-----~~~~~l~~~l---~~kr~LlVlDdv~ 301 (444)
+... ...-.+.+++ .++.+||++||+-
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111 1122355665 3789999999983
No 253
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.45 E-value=0.01 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.-++|.|++|+||||+|+.+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
No 254
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.44 E-value=0.14 Score=50.27 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=52.4
Q ss_pred eEEEEEecCCChHHHHH-HHHhhcccc----ccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhc-------cCCCCcc-c
Q 047559 212 AVIPIVGMAGVGKTTLA-REVYNDRAV----EDSKFD-VKAWVCVSDDF-DVLNISRALLESIT-------FASCDLK-A 276 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~~f~-~~~wv~vs~~~-~~~~~~~~il~~l~-------~~~~~~~-~ 276 (444)
.-++|+|.+|+|||+|| ..+.+.... .+ +.+ .++++-++... .+.++.+.+...=. ....+.+ .
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~-~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE-KKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCT-TTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhcccccc-CCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 46899999999999994 566666432 11 344 46788887654 44555555554210 0111111 1
Q ss_pred HHH----HHHHHHHHh--CCceEEEEEeCCC
Q 047559 277 LNE----VQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 277 ~~~----~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
... ..-.+.+++ .++.+||++||+-
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 111 122344555 6789999999983
No 255
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.44 E-value=0.018 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|+|||||++.+....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988654
No 256
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.44 E-value=0.11 Score=51.45 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=35.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCC-HHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFD-VLNISRAL 263 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i 263 (444)
.-++|+|..|+|||+|++.+.+.. +-+.++++-++.... +.+++..+
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 578999999999999999987652 456788888887654 44555554
No 257
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.44 E-value=0.077 Score=50.45 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=31.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 185 AVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++|....+.++...+..-.. .. ..+.|.|.+|+||+++|+.++...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~---~~-~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK---SK-APVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT---SC-SCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhhc---cc-hhheEEeCCCchHHHHHHHHHHhc
Confidence 467776666666554432211 11 347799999999999999998754
No 258
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.42 E-value=0.14 Score=47.01 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|.+|+||||++..++...
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999988664
No 259
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.38 E-value=0.055 Score=52.63 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=53.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccC-CcceeEEEEeCCCC-CHHHHHHHHHHHhcc-------CCCCcccHH----
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDS-KFDVKAWVCVSDDF-DVLNISRALLESITF-------ASCDLKALN---- 278 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~-~~~~~~~~il~~l~~-------~~~~~~~~~---- 278 (444)
.-++|+|.+|+|||+|+..+.++...... .-+.++++-++... .+.++++.+...=.. ...+.+...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 46788999999999999999887543210 11466777777654 455666666543111 111111111
Q ss_pred -HHHHHHHHHh---CCceEEEEEeCC
Q 047559 279 -EVQVQIKRAV---DGKKLLLVLDDV 300 (444)
Q Consensus 279 -~~~~~l~~~l---~~kr~LlVlDdv 300 (444)
...-.+.+++ +++.+||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1122345555 368999999997
No 260
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.35 E-value=0.052 Score=56.79 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=36.0
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTS-------SDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+.|.++.++.|.+.+.-.-. .+....+-+.++|++|.|||.||+.+++..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 4567777777777665432211 011334568899999999999999999874
No 261
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.31 E-value=0.41 Score=47.26 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=21.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
....+|+|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999998754
No 262
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.30 E-value=0.015 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=16.0
Q ss_pred eEEEEEecCCChHHHHHHHHh-hc
Q 047559 212 AVIPIVGMAGVGKTTLAREVY-ND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~-~~ 234 (444)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 54
No 263
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.30 E-value=0.019 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|+|+.|+||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998753
No 264
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.28 E-value=0.1 Score=44.75 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=31.5
Q ss_pred EEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLE 265 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~ 265 (444)
.|+|-|..|+||||.++.+.+.....+ . .+++..-+......+.++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g--~-~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG--K-KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--C-CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--C-cEEEEECCCCCcHHHHHHHHhh
Confidence 477889999999999999988754332 2 2334433333344455555543
No 265
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.27 E-value=0.062 Score=47.56 Aligned_cols=51 Identities=24% Similarity=0.209 Sum_probs=33.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALL 264 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il 264 (444)
..|.|.|+.|+||||+++.+.+..... .+..+....-.......+.+++++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeeeecCCCCCHHHHHHHHHH
Confidence 689999999999999999998875433 455344444333323334444444
No 266
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.27 E-value=0.19 Score=48.72 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.0
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|.|+|.+|+||||++..+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999998887543
No 267
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.26 E-value=0.029 Score=52.03 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+|+|+|+.|+|||||++.+...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999999998865
No 268
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.25 E-value=0.027 Score=52.00 Aligned_cols=24 Identities=46% Similarity=0.501 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|+||||+++.+....
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 799999999999999999987643
No 269
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.24 E-value=0.03 Score=52.20 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
++|.|+|+.|+|||||+..++...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 689999999999999999998753
No 270
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.24 E-value=0.026 Score=47.52 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++.|+|..|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988764
No 271
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.22 E-value=0.044 Score=53.24 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=35.8
Q ss_pred CcccccchhHHHHHHHHhcC--------CCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTD--------TSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|.+..++.+...+... ........+-+.++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 45889888887776655321 00000123568999999999999999998764
No 272
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.22 E-value=0.2 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999988754
No 273
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.22 E-value=0.025 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+|+|.|+.|+||||+++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999765
No 274
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.21 E-value=0.039 Score=48.04 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.2
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...+++|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998866
No 275
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.16 E-value=0.024 Score=51.51 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998753
No 276
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.16 E-value=0.027 Score=49.02 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 277
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.15 E-value=0.027 Score=49.16 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998753
No 278
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.14 E-value=0.032 Score=56.93 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=36.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 184 RAVFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|.+.-++.+...+... ..+.|+|++|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 46899988888777776543 478999999999999999998753
No 279
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.13 E-value=0.028 Score=52.56 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|+|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999875
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.13 E-value=0.025 Score=51.08 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999753
No 281
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.11 E-value=0.027 Score=49.47 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
No 282
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.10 E-value=0.15 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 58999999999999999998754
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.07 E-value=0.027 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999753
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.05 E-value=0.02 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998765
No 285
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.05 E-value=0.029 Score=54.41 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999998753
No 286
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.05 E-value=0.032 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|.|+|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999864
No 287
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.05 E-value=0.1 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999754
No 288
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.03 E-value=0.031 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.8
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.-.++|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998653
No 289
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.02 E-value=0.028 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 290
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.01 E-value=0.027 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 291
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.00 E-value=0.03 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 69999999999999999998753
No 292
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.99 E-value=0.031 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.9
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.-.+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3479999999999999999988764
No 293
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.99 E-value=0.03 Score=51.54 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999863
No 294
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.98 E-value=0.028 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999999999998753
No 295
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.96 E-value=0.03 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 296
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.96 E-value=0.024 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999764
No 297
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.95 E-value=0.031 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..|.|.|++|+||||+|+.+....
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998763
No 298
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.90 E-value=0.22 Score=49.51 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHH
Q 047559 195 KMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRA 262 (444)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~ 262 (444)
+.++.|..-.. -.-++|.|..|+|||+|+..+.+.. +-+.++++-++... .+.+++..
T Consensus 221 rvID~l~Pigr-----Gqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVTK-----GGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCBT-----TCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCccC-----CCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 34555544322 2578999999999999999998752 44678888887653 34444444
No 299
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.86 E-value=0.03 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999754
No 300
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.85 E-value=0.032 Score=50.56 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 301
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.80 E-value=0.029 Score=47.34 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 302
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.80 E-value=0.095 Score=45.59 Aligned_cols=52 Identities=23% Similarity=0.191 Sum_probs=33.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLE 265 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~ 265 (444)
..|.|.|+.|+||||+++.+.+..... .+..+.+..-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL--GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 589999999999999999998875443 3423344433333334455555554
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.79 E-value=0.032 Score=50.67 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999754
No 304
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.78 E-value=0.039 Score=55.23 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++.|.|.+|+|||||++.++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 699999999999999999998653
No 305
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.78 E-value=0.039 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 306
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.78 E-value=0.032 Score=50.29 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999754
No 307
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.76 E-value=0.037 Score=52.28 Aligned_cols=25 Identities=44% Similarity=0.450 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+++|+|+.|+||||+++.+....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4799999999999999999987643
No 308
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.76 E-value=0.033 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998754
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.75 E-value=0.041 Score=44.88 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.-|.|+|.+|+|||||...+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 310
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.73 E-value=0.075 Score=46.02 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=54.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhccCCC--CcccHHHHHHHHHHHh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD-DFDVLNISRALLESITFASC--DLKALNEVQVQIKRAV 288 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l 288 (444)
.+..++|.-|.||||.+.....+.... ...+.++-..-+ .+... .+.+.++.... ...+.. .+.+.+
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d~R~ge~----~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCIDNRYSEE----DVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC---------------------CCEEECSSGG----GGGGGC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccCCcchHH----HHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 788999999999999998887765433 233333321111 11122 23333322111 011111 222233
Q ss_pred CCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChH
Q 047559 289 DGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAH 332 (444)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~ 332 (444)
.++--+|++|++.-.+....+.+.. +.+ .|..||+|.++-+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~-l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQV-LAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHH-HHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHH-Hhh--CCCEEEEEecccc
Confidence 3333399999997765555544433 222 3778999998543
No 311
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.70 E-value=0.041 Score=49.58 Aligned_cols=111 Identities=9% Similarity=0.088 Sum_probs=55.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD-DFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
.+++|+|+.|+|||||++.+..-.... +...+++.-.. .+-.... ..++.+-.. ..+. ..+...+...|..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~---~~G~I~~~g~~i~~~~~~~-~~~v~q~~~-gl~~---~~l~~~la~aL~~ 97 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQT---KSYHIITIEDPIEYVFKHK-KSIVNQREV-GEDT---KSFADALRAALRE 97 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHH---CCCEEEEEESSCCSCCCCS-SSEEEEEEB-TTTB---SCHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCC---CCCEEEEcCCcceeecCCc-ceeeeHHHh-CCCH---HHHHHHHHHHHhh
Confidence 799999999999999999987643211 12333332111 0000000 000000000 0011 1224455666655
Q ss_pred ceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHHh
Q 047559 291 KKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 291 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~ 335 (444)
++=+|++|+..+ ......+.... ..|.-|++||.......
T Consensus 98 ~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 98 DPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred CCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 666888999852 33333322222 24667888887765443
No 312
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.68 E-value=0.068 Score=50.58 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...+...+.... ....+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 445555554322 34579999999999999999988754
No 313
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.67 E-value=0.034 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999865
No 314
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.67 E-value=0.034 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998754
No 315
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.65 E-value=0.11 Score=45.49 Aligned_cols=53 Identities=19% Similarity=0.074 Sum_probs=33.5
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcccc-ccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAV-EDSKFDVKAWVCVSDDFDVLNISRALLE 265 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~vs~~~~~~~~~~~il~ 265 (444)
...|.|.|+.|+||||+++.+.+.... . .+.......-+......+.+++++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~--g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIY--GVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHH--CGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcc--CceeeEeeeCCCCChHHHHHHHHHh
Confidence 478999999999999999999887544 2 3444332222332233444555544
No 316
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.64 E-value=0.035 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999754
No 317
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.63 E-value=0.038 Score=47.22 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+.|.|.|++|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67999999999999999999865
No 318
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.62 E-value=0.044 Score=50.32 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+|.|+|+.|+||||||..+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 368999999999999999999865
No 319
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.62 E-value=0.041 Score=51.05 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=21.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+.+||+|.|=||+||||.+--+.--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 44589999999999999998766543
No 320
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.61 E-value=0.12 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 68999999999999999988653
No 321
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.60 E-value=0.036 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999875
No 322
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.58 E-value=0.39 Score=51.26 Aligned_cols=120 Identities=23% Similarity=0.200 Sum_probs=62.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCC--cceeEEEEeCCC-------CCHHH-----------HHHHHHHHhccCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSK--FDVKAWVCVSDD-------FDVLN-----------ISRALLESITFAS 271 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~~~~wv~vs~~-------~~~~~-----------~~~~il~~l~~~~ 271 (444)
.+++|+|+.|+|||||.+.+..-. +.+.. -... .+.+.+. .++.+ -...++..++...
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~-i~g~~~~~~~~-~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQ-VDGFPTQEECR-TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTC-STTCCCTTTSC-EEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cCCCcccccee-EEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 589999999999999999998421 11000 0011 1222221 12222 2334444444310
Q ss_pred ------CCccc-HHHHHHHHHHHhCCceEEEEEeCCCCC-ChhcHHHhhcccCCCCCCcEEEEecCChHHHh
Q 047559 272 ------CDLKA-LNEVQVQIKRAVDGKKLLLVLDDVWNE-DYCLWEDLKAPFLAAAPNSKIIVTTRHAHVAA 335 (444)
Q Consensus 272 ------~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTr~~~va~ 335 (444)
...-+ -+...-.|...+-.++=+|+||+--+. |...-..+...+.. .|..||++|.+.....
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHH
Confidence 01112 222233455666667779999997442 33333334444433 4667888888766554
No 323
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.57 E-value=0.039 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 68999999999999999998754
No 324
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.57 E-value=0.1 Score=51.11 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=49.1
Q ss_pred eEEEEEecCCChHHHHH-HHHhhccccccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhc--------cCCCCccc----
Q 047559 212 AVIPIVGMAGVGKTTLA-REVYNDRAVEDSKFD-VKAWVCVSDDF-DVLNISRALLESIT--------FASCDLKA---- 276 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~il~~l~--------~~~~~~~~---- 276 (444)
.-++|+|.+|+|||+|| ..+.+.. ..+ .++++-++... .+.++.+.+...=. ....+...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 46899999999999995 5777763 234 45777777654 34445444433110 00111111
Q ss_pred HHHHHHHHHHHh--CCceEEEEEeCC
Q 047559 277 LNEVQVQIKRAV--DGKKLLLVLDDV 300 (444)
Q Consensus 277 ~~~~~~~l~~~l--~~kr~LlVlDdv 300 (444)
.....-.+.+++ +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111222334444 689999999998
No 325
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.57 E-value=0.52 Score=49.39 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=45.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCC------------------
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCD------------------ 273 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~------------------ 273 (444)
.++.|+|+.|.||||++..+........ .....+.+......-..++...+...++.....
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~-~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I 188 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPH-LENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTIL 188 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGG-GGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccc-CCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCE
Confidence 4899999999999996665543321111 112334444443333334444444443221110
Q ss_pred -cccHHHHHHHHHH-HhCCceEEEEEeCCCC
Q 047559 274 -LKALNEVQVQIKR-AVDGKKLLLVLDDVWN 302 (444)
Q Consensus 274 -~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~ 302 (444)
..+...+...+.. .+-.+--+||||+++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 0123344433332 2234556899999975
No 326
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.56 E-value=0.31 Score=43.01 Aligned_cols=104 Identities=16% Similarity=0.093 Sum_probs=54.0
Q ss_pred EEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccC-C-------CC-----cccHHHH
Q 047559 214 IPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFA-S-------CD-----LKALNEV 280 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~-~-------~~-----~~~~~~~ 280 (444)
+.|+|+.|.|||.+|..+.... . ..++++ +....-..+....+.. ++.. . .. ..+.+.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-----~-~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l 182 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-----S-TPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSA 182 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-----C-SCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-----C-CCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHH
Confidence 7889999999999998877642 1 123333 2222112222222222 2111 0 00 1122333
Q ss_pred HHHHHHHhCCceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecC
Q 047559 281 QVQIKRAVDGKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTR 329 (444)
Q Consensus 281 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr 329 (444)
..... .+.++--+||+|+++......+..+...+. ...++++|..
T Consensus 183 ~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 183 YVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 33332 333445699999998875556766655543 2345556654
No 327
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.55 E-value=0.063 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.8
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
....|+|+|.+|+|||||.+.+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 328
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.53 E-value=0.037 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.++.|+|++|+|||||+..+...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 69999999999999999998754
No 329
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.49 E-value=0.2 Score=46.03 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=21.8
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++.++|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999887654
No 330
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.47 E-value=0.042 Score=44.87 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999765
No 331
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.45 E-value=0.15 Score=58.42 Aligned_cols=85 Identities=16% Similarity=0.122 Sum_probs=56.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHHH
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQIK 285 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 285 (444)
-.++.|.|++|+||||||.++...... .-..++|++....++... .+.++.... +..+.+++...+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 379999999999999999999876432 223678888777666432 344443221 2345566666666
Q ss_pred HHh-CCceEEEEEeCCCCC
Q 047559 286 RAV-DGKKLLLVLDDVWNE 303 (444)
Q Consensus 286 ~~l-~~kr~LlVlDdv~~~ 303 (444)
... ..+.-+||+|.+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 544 345569999998543
No 332
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.43 E-value=0.043 Score=49.76 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998864
No 333
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.42 E-value=0.084 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|.|||||++.+..-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 69999999999999999999754
No 334
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.41 E-value=0.028 Score=48.10 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=54.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC--CcccHHHHHHHHHHHhC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC--DLKALNEVQVQIKRAVD 289 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~ 289 (444)
.+..++|..|.||||.+..+..+.... .....++-..-.. ..-...+.+.++.... ...+.. .+.+.+.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~--g~kV~v~k~~~d~---r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVFKPEIDN---RYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC----------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccCc---cchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 799999999999999998887765433 2333333211110 0000011111111100 011111 2333444
Q ss_pred CceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCCh
Q 047559 290 GKKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHA 331 (444)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~ 331 (444)
++-=+|++|++...+....+.+... .+ .|..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l-~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKI-AE--SGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHH-HH--TTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH-Hh--CCCEEEEEeccc
Confidence 3334999999866544444444332 22 277899998854
No 335
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.36 E-value=0.14 Score=57.75 Aligned_cols=85 Identities=16% Similarity=0.122 Sum_probs=56.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHHH
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQIK 285 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 285 (444)
-+++.|.|.+|+||||||.++...... .-..++|++....++... ++.++.... ...+.+++...+.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 379999999999999999998876432 224678888877766531 344433211 2234555555555
Q ss_pred HHh-CCceEEEEEeCCCCC
Q 047559 286 RAV-DGKKLLLVLDDVWNE 303 (444)
Q Consensus 286 ~~l-~~kr~LlVlDdv~~~ 303 (444)
... ..+.-+||+|.+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 544 345569999998553
No 336
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.34 E-value=0.14 Score=44.44 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAV 237 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 237 (444)
..|.|.|+.|+||||+++.+.+....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999877543
No 337
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.33 E-value=0.044 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999865
No 338
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.31 E-value=0.045 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++.|+|++|+|||||++.+....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 699999999999999999988764
No 339
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.30 E-value=0.3 Score=47.75 Aligned_cols=85 Identities=24% Similarity=0.312 Sum_probs=50.8
Q ss_pred eEEEEEecCCChHHHHH-HHHhhccccccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhcc--------CCCCcccHHH-
Q 047559 212 AVIPIVGMAGVGKTTLA-REVYNDRAVEDSKFD-VKAWVCVSDDF-DVLNISRALLESITF--------ASCDLKALNE- 279 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~il~~l~~--------~~~~~~~~~~- 279 (444)
.-++|+|..|+|||+|+ ..+.+.. +.+ .++++-+++.. .+.++.+.+...=.. ...+......
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 46899999999999996 5676652 333 45788888764 445566655432100 0111111111
Q ss_pred ---HHHHHHHHh--CCceEEEEEeCCC
Q 047559 280 ---VQVQIKRAV--DGKKLLLVLDDVW 301 (444)
Q Consensus 280 ---~~~~l~~~l--~~kr~LlVlDdv~ 301 (444)
..-.+.+++ +++.+||++||+-
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 112344454 6899999999983
No 340
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.29 E-value=0.056 Score=47.68 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=22.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..|+|.|++|+||||+++.+.+...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 7899999999999999999988753
No 341
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.25 E-value=0.052 Score=48.68 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
....++.++|.||+||||++..+....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999987543
No 342
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.23 E-value=0.046 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||.+.+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 568999999999999999987653
No 343
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.19 E-value=0.046 Score=49.33 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999754
No 344
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.18 E-value=0.053 Score=47.98 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
....+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999998764
No 345
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.11 E-value=0.18 Score=53.80 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=19.2
Q ss_pred eEEEEEecCCChHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREV 231 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v 231 (444)
.+++|+|+.|.||||+.+.+
T Consensus 663 ~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 69999999999999999988
No 346
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.10 E-value=0.053 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 347
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.04 E-value=0.062 Score=47.67 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..|+|.|..|+||||+++.+.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 689999999999999999998763
No 348
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.04 E-value=0.058 Score=50.17 Aligned_cols=25 Identities=36% Similarity=0.491 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++.|+|.+|+||||++..+....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999887654
No 349
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.03 E-value=0.054 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.223 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|++|+|||||++.+...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 69999999999999999999864
No 350
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.03 E-value=0.026 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=18.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+|+|.|..|+||||+|+.+.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998764
No 351
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.02 E-value=0.052 Score=45.87 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 352
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.99 E-value=0.054 Score=44.38 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.-|+|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998653
No 353
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.98 E-value=0.049 Score=50.69 Aligned_cols=25 Identities=44% Similarity=0.715 Sum_probs=22.5
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+.++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999854
No 354
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.98 E-value=0.05 Score=44.69 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5799999999999999998754
No 355
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.95 E-value=0.17 Score=48.36 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=31.3
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 186 VFGRQQDKAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
++|....+.++.+.+..-.. .+ ..|.|.|..|+|||++|+.++..
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~---~~-~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISC---AE-CPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTT---CC-SCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhccHHhhHHHHHHHHhcC---CC-CCeEEecCCCcCHHHHHHHHHHh
Confidence 55666666666665544222 22 23599999999999999999865
No 356
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.93 E-value=0.059 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+.+|+|+.|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999864
No 357
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.92 E-value=0.11 Score=46.63 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhc
Q 047559 195 KMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-+..||.... ++...+.|+|++|+|||.+|..+.+.
T Consensus 92 ~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3555554321 22357999999999999999999875
No 358
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.89 E-value=0.072 Score=44.28 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.7
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999764
No 359
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.89 E-value=0.058 Score=45.41 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|+|+|.+|+|||||.+.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999865
No 360
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.87 E-value=0.057 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999987653
No 361
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.86 E-value=0.057 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987653
No 362
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.85 E-value=0.058 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999865
No 363
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.84 E-value=0.057 Score=47.78 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=27.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSD 252 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 252 (444)
.++.|.|++|+|||||+.++...... .-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 68999999999999999887654321 223566776544
No 364
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.84 E-value=0.071 Score=44.77 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...|+|+|.+|+|||||...+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 367899999999999999999865
No 365
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.84 E-value=0.057 Score=44.46 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999998865
No 366
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.83 E-value=0.059 Score=44.39 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 367
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.82 E-value=0.07 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999865
No 368
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.81 E-value=0.058 Score=44.36 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 369
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.77 E-value=0.064 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|+|.|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 68999999999999999998764
No 370
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.76 E-value=0.059 Score=44.37 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=19.4
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999864
No 371
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.74 E-value=0.059 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999888765
No 372
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.71 E-value=0.064 Score=44.12 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998765
No 373
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.68 E-value=0.062 Score=44.79 Aligned_cols=26 Identities=42% Similarity=0.664 Sum_probs=21.9
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...-|.|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34678999999999999999987653
No 374
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.65 E-value=0.081 Score=44.68 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...|+|+|.+|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3578999999999999999998764
No 375
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.63 E-value=0.15 Score=46.58 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 194 AKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+.+.+.|.............|+|+|.+|+|||||...+....
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 444454443222222445689999999999999999998764
No 376
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.63 E-value=0.092 Score=48.42 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
++++.+.+.. .+++|+|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G---------~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG---------FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT---------CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC---------cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5666666531 589999999999999999998 53
No 377
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.62 E-value=0.064 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999765
No 378
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.61 E-value=0.065 Score=45.12 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-|+|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998865
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.59 E-value=0.075 Score=46.06 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.2
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
....|.|+|.+|+|||||...+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998753
No 380
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.58 E-value=0.09 Score=43.69 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.9
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4467899999999999999998865
No 381
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.55 E-value=0.069 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.8
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999998765
No 382
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.54 E-value=0.062 Score=43.99 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.0
Q ss_pred EEEEecCCChHHHHHHHHhhc
Q 047559 214 IPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (444)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998754
No 383
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.52 E-value=0.066 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||...+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 568999999999999999887653
No 384
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.51 E-value=0.069 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..|+|+|.+|+|||||.+.+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 385
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.45 E-value=0.05 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...|+|.|..|+||||+++.+.+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3789999999999999999887653
No 386
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.45 E-value=0.07 Score=43.81 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 387
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.44 E-value=0.062 Score=44.74 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...--|+|+|.+|+|||||...+....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 334678999999999999999997653
No 388
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.44 E-value=0.081 Score=51.37 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.2
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...+|.|+|.+|+||||++..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999998887653
No 389
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.43 E-value=0.13 Score=50.76 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=34.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC-CHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF-DVLNISRA 262 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~ 262 (444)
.-++|.|..|+|||+|+..+.+.. +-+.++++-++... .+.+++..
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKWS-----NADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHTT
T ss_pred CEEeeeCCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 578999999999999999998762 44678888887653 33444433
No 390
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.42 E-value=0.06 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.-|+|+|.+|+|||||.+.+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998754
No 391
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.40 E-value=0.14 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+...
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999998764
No 392
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.39 E-value=0.081 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+|+|+|.+|+|||||...+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999999999864
No 393
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.37 E-value=0.074 Score=44.61 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999987653
No 394
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.36 E-value=0.6 Score=45.44 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=34.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLES 266 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~ 266 (444)
.++.|.|.+|+||||||..++.+....+ ..++|++.- .+..++...++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECSS--SCTTHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEECC--CCHHHHHHHHHHH
Confidence 6899999999999999999887643322 245666543 3444555555543
No 395
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.35 E-value=0.073 Score=43.84 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.-|+|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999764
No 396
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.35 E-value=0.072 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998654
No 397
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.34 E-value=0.076 Score=44.09 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 398
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.33 E-value=0.076 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..++|+|..|+|||||++.+..-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998764
No 399
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.33 E-value=0.073 Score=44.17 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..-|.|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999998654
No 400
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.29 E-value=0.074 Score=44.51 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999865
No 401
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.25 E-value=0.29 Score=47.31 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHhh
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
...++..|.|.+|.||||+.+..++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 5678999999999999999988875
No 402
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.24 E-value=0.059 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998865
No 403
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.22 E-value=0.05 Score=55.28 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhhcc
Q 047559 213 VIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
-|.++|++|+|||+||+.+.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58999999999999999988753
No 404
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.20 E-value=0.19 Score=51.16 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=27.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDF 254 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 254 (444)
+++.|.|.+|+||||++..+..........-...+.+..+..-
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~ 207 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGK 207 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChh
Confidence 5899999999999999887765432110011245666655543
No 405
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.20 E-value=0.075 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 58999999999999999999753
No 406
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.19 E-value=0.49 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..++|+|+.|.|||||++.+....
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 689999999999999999997654
No 407
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.17 E-value=0.15 Score=44.67 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=19.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhccc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
..|.|.|+.|+||||+++.+.+...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999987754
No 408
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.16 E-value=0.082 Score=44.15 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999854
No 409
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.16 E-value=0.053 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..|+|+|..|+|||||.+.+...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999988754
No 410
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.16 E-value=0.099 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 57799999999999999988765
No 411
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.13 E-value=0.079 Score=44.83 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=20.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|+|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 356899999999999999777654
No 412
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.12 E-value=0.079 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|+|+|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 413
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.11 E-value=0.08 Score=44.30 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 414
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.11 E-value=0.088 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..+|.++|++|.||||+|+.+....
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999997654
No 415
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.08 E-value=0.079 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.5
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.--|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999988653
No 416
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.06 E-value=0.082 Score=44.23 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..-|.|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3568999999999999999998653
No 417
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.05 E-value=0.082 Score=44.06 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..-|.|+|.+|+|||||...+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999988653
No 418
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.05 E-value=0.079 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 58999999999999999999753
No 419
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.04 E-value=0.095 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..+++|+|++|+|||||.+.+...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 379999999999999999998753
No 420
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.03 E-value=0.085 Score=45.46 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||.+.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999865
No 421
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.03 E-value=0.081 Score=45.01 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
--|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999874
No 422
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.00 E-value=0.084 Score=44.02 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998865
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.99 E-value=0.084 Score=44.90 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999999865
No 424
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.98 E-value=0.28 Score=55.40 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=57.3
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCC-----CcccHHHHHHHH
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASC-----DLKALNEVQVQI 284 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 284 (444)
.-++|-|+|+.|+||||||.++..... . .=...+|+...+..++.- ++.++.... .+...++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~--~-~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ--R-EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--H-TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--h-cCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 347999999999999999999886532 2 345778998887777653 556554432 233335555555
Q ss_pred HHHh-CCceEEEEEeCCC
Q 047559 285 KRAV-DGKKLLLVLDDVW 301 (444)
Q Consensus 285 ~~~l-~~kr~LlVlDdv~ 301 (444)
...+ .+..-+||+|-|-
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 5555 3456699999983
No 425
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.97 E-value=0.082 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+++|+|+.|+|||||.+.+..-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 58999999999999999999753
No 426
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.95 E-value=0.084 Score=45.09 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=21.8
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...-|+|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999987653
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.95 E-value=0.088 Score=44.61 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 568999999999999999997653
No 428
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.92 E-value=0.099 Score=45.56 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4788999999999999998765
No 429
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.92 E-value=0.067 Score=45.66 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.6
Q ss_pred CceEEEEEecCCChHHHHHHHHhh
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
...-|+|+|.+|+|||||.+.+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 346789999999999999999853
No 430
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.91 E-value=0.089 Score=45.17 Aligned_cols=24 Identities=46% Similarity=0.624 Sum_probs=20.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..-|+|+|.+|+|||||.+.+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998764
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.90 E-value=0.088 Score=43.81 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.--|+|+|.+|+|||||...+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568999999999999999987653
No 432
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.90 E-value=0.089 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|.|+|.+|+|||||.+.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999977664
No 433
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.87 E-value=0.091 Score=44.92 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..-|+|+|.+|+|||||...+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3578999999999999999998654
No 434
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.87 E-value=0.087 Score=45.09 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=22.1
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34678999999999999999987653
No 435
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.86 E-value=0.096 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.|.|+.|+||||+++.+....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998865
No 436
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.82 E-value=0.2 Score=41.99 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.-|+|+|.+|+|||||...+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999999854
No 437
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.80 E-value=0.077 Score=46.14 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.+|.|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988764
No 438
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.79 E-value=0.087 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 56899999999999999998865
No 439
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.79 E-value=0.1 Score=44.30 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.....|+|+|.+|+|||||...+....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344789999999999999999998653
No 440
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.79 E-value=0.12 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...|+|+|.+|+|||||...+...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367899999999999999999865
No 441
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.77 E-value=0.092 Score=44.84 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.5
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.--|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999988653
No 442
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.77 E-value=0.1 Score=49.64 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=55.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeE-EEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCC
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKA-WVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDG 290 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~-wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 290 (444)
.+++|+|+.|+|||||++.+....... ....+ ++. ++... .+..-...+.....+ .+...+...+...+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~---~~g~I~~~e--~~~e~--~~~~~~~~v~Q~~~g-~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT---KSYHIITIE--DPIEY--VFKHKKSIVNQREVG-EDTKSFADALRAALRE 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH---SCCEEEEEE--SSCCS--CCCCSSSEEEEEEBT-TTBSCSHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC---CCcEEEEec--ccHhh--hhccCceEEEeeecC-CCHHHHHHHHHHHhhh
Confidence 689999999999999999987653211 11222 222 11110 000000000000000 0011223456667766
Q ss_pred ceEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHHH
Q 047559 291 KKLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHVA 334 (444)
Q Consensus 291 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~va 334 (444)
.+=+|++|++.+ ......+.... ..|..||.|+...++.
T Consensus 209 ~pd~illdE~~d--~e~~~~~l~~~---~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 209 DPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---TTTCEEEECCCCCSHH
T ss_pred CcCEEEECCCCC--HHHHHHHHHHH---hcCCEEEEEECcchHH
Confidence 677899999963 23333322222 3466688887765544
No 443
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.74 E-value=0.093 Score=44.28 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 444
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.73 E-value=0.092 Score=44.10 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.-|.|+|.+|+|||||...+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 678999999999999999998654
No 445
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.73 E-value=0.081 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHhhc
Q 047559 213 VIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
-|+|+|..|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999997753
No 446
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.72 E-value=0.13 Score=47.44 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
++++...+.. .+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~g---------eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG---------KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC---------CeEEEECCCCCcHHHHHHHhcccc
Confidence 5666666632 489999999999999999998653
No 447
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.71 E-value=0.093 Score=44.57 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||...+....
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 568899999999999999998763
No 448
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.70 E-value=0.095 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.-|+|+|.+|+|||||...+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 578999999999999999987653
No 449
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.70 E-value=0.095 Score=44.43 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||...+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 568999999999999999998753
No 450
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.69 E-value=0.064 Score=50.59 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999975
No 451
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.66 E-value=0.068 Score=44.70 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.-|+|+|.+|+|||||...+...
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999988754
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.65 E-value=0.096 Score=44.32 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.--|+|+|.+|+|||||...+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998653
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.64 E-value=0.09 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+...
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999998754
No 454
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.62 E-value=0.096 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..|.|+|.+|+|||||...+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998653
No 455
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.60 E-value=0.28 Score=42.26 Aligned_cols=24 Identities=46% Similarity=0.627 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+-|+|-|..|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578899999999999999998865
No 456
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.58 E-value=0.11 Score=48.09 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 55689999999999999999999865
No 457
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.58 E-value=0.098 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|.|+|.+|+|||||...+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999998865
No 458
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.57 E-value=0.097 Score=43.83 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|.|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999864
No 459
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.57 E-value=0.098 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.3
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999998754
No 460
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.56 E-value=0.11 Score=47.83 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.6
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999865
No 461
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.55 E-value=0.082 Score=50.12 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|+.|+|||||++.+..-.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998653
No 462
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.52 E-value=0.1 Score=44.02 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999998754
No 463
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.48 E-value=0.19 Score=48.31 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+++|+|+.|+|||||.+.+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 6999999999999999999986
No 464
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.47 E-value=0.099 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|.|+|.+|+|||||...+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999998765
No 465
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.46 E-value=0.1 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999875
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.44 E-value=0.11 Score=44.58 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997653
No 467
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.42 E-value=0.1 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..-|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 367899999999999999999765
No 468
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.11 Score=43.97 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999997653
No 469
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.11 Score=44.17 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 56899999999999999999764
No 470
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.40 E-value=0.091 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.++.|+|+.|+|||||++.+....
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhh
Confidence 789999999999999999998764
No 471
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.40 E-value=0.14 Score=42.61 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.-+.|.|.+|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57899999999999999988764
No 472
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.35 E-value=0.094 Score=44.47 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|..|+|||||...+.+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999997653
No 473
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.35 E-value=0.16 Score=43.54 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.7
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+..+|+|+|++|+||+|+|..+.+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 4479999999999999999888653
No 474
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.31 E-value=0.14 Score=50.77 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=23.6
Q ss_pred CceEEEEEecCCChHHHHHHHHhhccc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDRA 236 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (444)
...+|.+.|+.|+||||+|+.+.....
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999998753
No 475
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.30 E-value=0.14 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999765
No 476
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.30 E-value=0.11 Score=48.83 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|..|+|||||.+.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999999874
No 477
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.30 E-value=0.11 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 56889999999999999998764
No 478
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.29 E-value=0.13 Score=45.34 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.4
Q ss_pred CceEEEEEecCCChHHHHHHHHhhcc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 34678999999999999999998654
No 479
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.29 E-value=0.13 Score=48.31 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.6
Q ss_pred CceEEEEEecCCChHHHHHHHHhhc
Q 047559 210 NLAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
+..+++|+|.+|+|||||+..+...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4479999999999999999998643
No 480
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.29 E-value=0.11 Score=45.18 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.2
Q ss_pred ceEEEEEecCCChHHHHHHHHhh
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999874
No 481
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.24 E-value=0.13 Score=47.48 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...++|+|+|-||+||||+|..+....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH
Confidence 345889999999999999998877554
No 482
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.22 E-value=0.12 Score=44.30 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.1
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|+|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 457899999999999999998765
No 483
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.20 E-value=0.12 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+|.++|++|+||||+++.+....
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998654
No 484
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.20 E-value=0.12 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998865
No 485
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.20 E-value=0.12 Score=43.78 Aligned_cols=23 Identities=39% Similarity=0.393 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.-|+|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999865
No 486
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.11 E-value=0.72 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..|+|||..|.|||||++.+..-
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 58999999999999999999754
No 487
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.07 E-value=0.094 Score=44.29 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
--|+|+|.+|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999988664
No 488
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.06 E-value=0.12 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.+++|+|++|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 489999999999999999998653
No 489
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.05 E-value=0.12 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.--|+|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998765
No 490
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.00 E-value=0.09 Score=49.14 Aligned_cols=106 Identities=8% Similarity=0.042 Sum_probs=55.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHhCCc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDRAVEDSKFDVKAWVCVSDDFDVLNISRALLESITFASCDLKALNEVQVQIKRAVDGK 291 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 291 (444)
.+++|+|+.|+|||||++.+..-... -...+.+.-......... . +.+..-.. .-......+...|..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~----~~g~i~i~~~~e~~~~~~-~---~~i~~~~g---gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK----EERIISIEDTEEIVFKHH-K---NYTQLFFG---GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT----TSCEEEEESSCCCCCSSC-S---SEEEEECB---TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC----CCcEEEECCeeccccccc-h---hEEEEEeC---CChhHHHHHHHHhhhC
Confidence 48999999999999999999865321 234444432221110000 0 00000000 1112334566677777
Q ss_pred eEEEEEeCCCCCChhcHHHhhcccCCCCCCcEEEEecCChHH
Q 047559 292 KLLLVLDDVWNEDYCLWEDLKAPFLAAAPNSKIIVTTRHAHV 333 (444)
Q Consensus 292 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTr~~~v 333 (444)
+=+|+||++.+. ..++.+. .+..+ +.-+|+||.....
T Consensus 241 p~ilildE~~~~--e~~~~l~-~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 241 PDRIILGELRSS--EAYDFYN-VLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp CSEEEECCCCST--HHHHHHH-HHHTT--CCCEEEEEECSSH
T ss_pred CCEEEEcCCChH--HHHHHHH-HHhcC--CCEEEEEEcccHH
Confidence 888999999653 3444443 33221 2236666665443
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.99 E-value=0.13 Score=44.01 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998865
No 492
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.94 E-value=0.15 Score=41.45 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHhh
Q 047559 212 AVIPIVGMAGVGKTTLAREVYN 233 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (444)
.+.+|+|+.|.|||||...++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999988764
No 493
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.89 E-value=0.14 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHhhcc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
++|+|.|-||+||||+|..+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 578889999999999998877654
No 494
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.89 E-value=0.13 Score=44.29 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999998855
No 495
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.86 E-value=0.27 Score=45.36 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
.....|+|+|.+|+|||||...+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 456789999999999999999997653
No 496
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.85 E-value=0.13 Score=44.61 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHhhc
Q 047559 212 AVIPIVGMAGVGKTTLAREVYND 234 (444)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (444)
--|+|+|.+|+|||||...+.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 56889999999999999998765
No 497
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.82 E-value=0.29 Score=44.14 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...|+++|.+|+|||||...+....
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999998654
No 498
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.81 E-value=0.26 Score=49.67 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 209 SNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
....+|.|.|++|+||||+|+.+....
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 344789999999999999999998764
No 499
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.76 E-value=0.11 Score=45.06 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHhhcc
Q 047559 211 LAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
...|+|+|..|+|||||...+....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999998764
No 500
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.72 E-value=0.3 Score=43.82 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEecCCChHHHHHHHHhhcc
Q 047559 193 KAKMLEMVLTDTSSDHSNLAVIPIVGMAGVGKTTLAREVYNDR 235 (444)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (444)
+.++.+.+.... .....|+|+|..|+|||||...+....
T Consensus 22 l~~~~~~~~~~~----~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKD----MNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTT----CCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcc----CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444332 234678999999999999999998654
Done!