BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047561
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 136/258 (52%), Gaps = 9/258 (3%)
Query: 45 VPIIDFGRLNEGREQ-RSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLP 103
VP ID + E+ R I+E+ A G ++NHGI +++ +FF L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 106
Query: 104 SEEKMKFMSGDVHRPVR-YSTSLKDGIDEIQFWRVILKHYAHPLDHW-IDFWPKNPPNYR 161
EEK K+ + ++ Y + L + W H A+P + + WPK P +Y
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 162 ENMGKYCTEERKLALELMSAITESLGLGPKYL---VNKMDEGMQVMAVNCYPPCPQPDIS 218
E +Y R LA ++ A++ LGL P L V ++E + M +N YP CPQP+++
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA 226
Query: 219 LGLPPHSDYTCLTIVLQS-SPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYK 277
LG+ H+D + LT +L + PGL++ +G W + S+ +H+GD LE+LSNG+YK
Sbjct: 227 LGVEAHTDVSALTFILHNMVPGLQLF--YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 284
Query: 278 SVVHRAILNRGSTRISLA 295
S++HR ++N+ RIS A
Sbjct: 285 SILHRGLVNKEKVRISWA 302
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 136/258 (52%), Gaps = 9/258 (3%)
Query: 45 VPIIDFGRLNEGREQ-RSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLP 103
VP ID + E+ R I+E+ A G ++NHGI +++ +FF L
Sbjct: 46 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 105
Query: 104 SEEKMKFMSGDVHRPVR-YSTSLKDGIDEIQFWRVILKHYAHPLDHW-IDFWPKNPPNYR 161
EEK K+ + ++ Y + L + W H A+P + + WPK P +Y
Sbjct: 106 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 165
Query: 162 ENMGKYCTEERKLALELMSAITESLGLGPKYL---VNKMDEGMQVMAVNCYPPCPQPDIS 218
E +Y R LA ++ A++ LGL P L V ++E + M +N YP CPQP+++
Sbjct: 166 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA 225
Query: 219 LGLPPHSDYTCLTIVLQS-SPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYK 277
LG+ H+D + LT +L + PGL++ +G W + S+ +H+GD LE+LSNG+YK
Sbjct: 226 LGVEAHTDVSALTFILHNMVPGLQLF--YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 283
Query: 278 SVVHRAILNRGSTRISLA 295
S++HR ++N+ RIS A
Sbjct: 284 SILHRGLVNKEKVRISWA 301
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 133/258 (51%), Gaps = 9/258 (3%)
Query: 45 VPIIDFGRLNEGREQ-RSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLP 103
VP ID + E+ R I+E+ A G ++NHGI + + +FF L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLS 106
Query: 104 SEEKMKFMSGDVHRPVR-YSTSLKDGIDEIQFWRVILKHYAHPLDHW-IDFWPKNPPNYR 161
EEK K+ + ++ Y + L + W H A+P + + WPK P +Y
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 162 ENMGKYCTEERKLALELMSAITESLGLGPKYL---VNKMDEGMQVMAVNCYPPCPQPDIS 218
E +Y R LA ++ A++ LGL P L V ++E + +N YP CPQP+++
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELA 226
Query: 219 LGLPPHSDYTCLTIVLQSS-PGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYK 277
LG+ H+D + LT +L + PGL++ +G W + S+ H+GD LE+LSNG+YK
Sbjct: 227 LGVEAHTDVSALTFILHNXVPGLQLF--YEGKWVTAKCVPDSIVXHIGDTLEILSNGKYK 284
Query: 278 SVVHRAILNRGSTRISLA 295
S++HR ++N+ RIS A
Sbjct: 285 SILHRGLVNKEKVRISWA 302
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 150/293 (51%), Gaps = 21/293 (7%)
Query: 46 PIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSE 105
PII ++N G E R+ + I +AC GFF++VNHGI + + D +K E
Sbjct: 5 PIISLDKVN-GVE-RAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 106 EKMK-FMSGDVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENM 164
++ K ++ V+ + D E F+ LKH P+ + I P YRE
Sbjct: 63 QRFKELVASKALEGVQAEVTDXDW--ESTFF---LKHL--PISN-ISEVPDLDEEYREVX 114
Query: 165 GKYCTEERKLALELMSAITESLGLGPKYLVNKM--DEGMQV-MAVNCYPPCPQPDISLGL 221
+ KLA EL+ + E+LGL YL N +G V+ YPPCP+PD+ GL
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 222 PPHSDYTCLTIVLQSS--PGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSV 279
H+D + ++ Q GL++L +DG W VP + S+ V++GD LEV++NG+YKSV
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLL--KDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSV 232
Query: 280 VHRAILNRGSTRISLASLHSLGMDEKMETAKELVD---EKNPKGYKESSFRDF 329
HR I + R SLAS ++ G D + A LV+ E+N + Y + F D+
Sbjct: 233 XHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 120/276 (43%), Gaps = 20/276 (7%)
Query: 65 KEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKF--MSGDVHRPVRYS 122
+E+G + R GF + ++ + Q+ +D A+ +A FF LP E K ++ + G + +
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFG 83
Query: 123 TSLKDGIDEI---QFWRVIL------KHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERK 173
G D +FW + AH D + WP P ++ ++
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRAHXAD---NVWPAEIPAFKHDVSWLYNSLDG 140
Query: 174 LALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIV 233
+++ AI L L + + +G V+ + YPP P+ + H D +T++
Sbjct: 141 XGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLL 200
Query: 234 LQSSPG-LEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAI----LNRG 288
L + G LE+LD DG W + L +++GD LE L+N S VHR + RG
Sbjct: 201 LGAEEGGLEVLD-RDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRG 259
Query: 289 STRISLASLHSLGMDEKMETAKELVDEKNPKGYKES 324
R S D +++T + V +NP Y ES
Sbjct: 260 VPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPES 295
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 37/250 (14%)
Query: 65 KEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKF--MSGDVHRPVRYS 122
K + GF + NH I + +++ + FF ++ + F + D P S
Sbjct: 16 KRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPASIS 75
Query: 123 TSLK-DGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSA 181
+ K + +I K Y H + W + P + R N+ Y + LA EL+
Sbjct: 76 ETAKGHTVKDI-------KEYYH-----VYPWGRIPDSLRANILAYYEKANTLASELLEW 123
Query: 182 ITE----------SLGLGPKYLVNKMDEGMQVMAVNCYPPCP--QPDISLGLPPHSDYTC 229
I S+ L P+ + N ++++ YPP + ++ H D
Sbjct: 124 IETYSPDEIKAKFSIPL-PEXIANSHKTLLRIL---HYPPXTGDEEXGAIRAAAHEDINL 179
Query: 230 LTIV-LQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRG 288
+T++ + PGL++ +DGSW VP ++ +++GD L+ S+G + S HR I G
Sbjct: 180 ITVLPTANEPGLQV-KAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEG 238
Query: 289 S----TRISL 294
+ +RISL
Sbjct: 239 TDKTKSRISL 248
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 130/318 (40%), Gaps = 37/318 (11%)
Query: 43 AYVPIIDFGRLNEGREQRSMVIKEIGNACSR-LGFFQIVNHGICQSILDGALSTAFDFFK 101
A VP ID L + M + + +A SR GFF VNHGI L + F
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQK-TKEFHMSI 65
Query: 102 LPSEE---KMKFMSGDVHRPVRYSTSLK-DGIDEIQFWRVILKHYA--HPL------DHW 149
P E+ ++ + + VR L G ++ + + ++ HP H
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 150 IDFWPKNP--PNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVN--KMDEGMQVMA 205
++ WP P +++ +Y + L+ L+ +LG + K D+ + +
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 206 VNCYP---PCPQPDIS-------LGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPK 255
+ YP P P+ I L H D + +T++ QS+ ++T G ++ +
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEA 244
Query: 256 MQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELVDE 315
+ ++ G ++ L+N YK+ +HR + + R SL +LG D ++ D
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVIDP----FDP 299
Query: 316 KNPKGYKES---SFRDFL 330
+ P G + S+ D+L
Sbjct: 300 REPNGKSDREPLSYGDYL 317
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 130/318 (40%), Gaps = 37/318 (11%)
Query: 43 AYVPIIDFGRLNEGREQRSMVIKEIGNACSR-LGFFQIVNHGICQSILDGALSTAFDFFK 101
A VP ID L + M + + +A SR GFF VNHGI L + F
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRL-SQKTKEFHMSI 65
Query: 102 LPSEE---KMKFMSGDVHRPVRYSTSLK-DGIDEIQFWRVILKHYA--HPL------DHW 149
P E+ ++ + + VR L G ++ + + ++ HP H
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 150 IDFWPKNP--PNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVN--KMDEGMQVMA 205
++ WP P +++ +Y + L+ L+ +LG + K D+ + +
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 206 VNCYP---PCPQPDIS-------LGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPK 255
+ YP P P+ I L H D + +T++ QS+ ++T G ++ +
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEA 244
Query: 256 MQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELVDE 315
+ ++ G ++ L+N YK+ +HR + + R SL +LG D ++ D
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVIDP----FDP 299
Query: 316 KNPKGYKES---SFRDFL 330
+ P G + S+ D+L
Sbjct: 300 REPNGKSDREPLSYGDYL 317
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 17/69 (24%)
Query: 121 YSTSLKDGIDEIQFWRV----------ILKHYAHPLDHWIDFWPKNPPN--YRENMGK-- 166
Y + ++D + E+ WR + + + H+I+FW + PPN YR +G
Sbjct: 338 YFSQIEDLMIEMSMWRCNSELRVRAEELYRTARKDVKHYIEFWKRIPPNQPYRVILGDVR 397
Query: 167 ---YCTEER 172
Y T ER
Sbjct: 398 DKLYNTRER 406
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 28.1 bits (61), Expect = 8.3, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 296 SLHSLGMDEKMETAKELVDEKNPKGYKESSFRDFLNFLSK 335
++ +LG + K E K+++ E + +G + +F DFL +++
Sbjct: 56 AMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQ 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,518,787
Number of Sequences: 62578
Number of extensions: 433980
Number of successful extensions: 1229
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 16
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)